******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrXII:922134-922519 1.0000 100 chrV:141084-141453 1.0000 100 chrVIII:75806-75914 1.0000 100 chrXV:438452-438949 1.0000 100 chrXIV:529535-529788 1.0000 100 chrII:408511-409011 1.0000 100 chrXVI:572057-572508 1.0000 100 chrVII:479251-483001 1.0000 100 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1.0000 100 chrIX:257375-257701 1.0000 100 chrXIII:923567-923829 1.0000 100 chrVIII:121099-121515 1.0000 100 chrVII:1050259-1050490 1.0000 100 chrIX:324079-324717 1.0000 100 chrXIV:279659-280075 1.0000 100 chrIV:980829-981273 1.0000 100 chrXII:262792-263103 1.0000 100 chrXIV:576988-577187 1.0000 100 chrIV:217153-217498 1.0000 100 chrXI:109395-109811 1.0000 100 chrX:348920-349020 1.0000 100 chrXI:431345-431644 1.0000 100 chrIV:489914-490330 1.0000 100 chrXIV:783853-784181 1.0000 100 chrXIII:549984-550217 1.0000 100 chrXV:678820-679169 1.0000 100 chrIV:234161-234684 1.0000 100 chrXIII:301722-302138 1.0000 100 chrXII:818811-819171 1.0000 100 chrIV:1524691-1524899 1.0000 100 chrX:90083-90183 1.0000 100 chrVIII:132878-133371 1.0000 100 chrXV:83179-83455 1.0000 100 chrIV:357388-357690 1.0000 100 chrVIII:148955-149269 1.0000 100 chrXVI:377956-378372 1.0000 100 chrXI:517295-517473 1.0000 100 chrXIII:924115-924431 1.0000 100 chrXV:896512-896928 1.0000 100 chrII:332324-332722 1.0000 100 chrIV:1461578-1462039 1.0000 100 chrIV:488525-489073 1.0000 100 chrII:266192-266650 1.0000 100 chrXII:693675-694091 1.0000 100 chrXVI:744099-744521 1.0000 100 chrXI:326196-327355 1.0000 100 chrXIV:575286-575677 1.0000 100 chrXII:799454-799870 1.0000 100 chrVII:310493-310888 1.0000 100 chrXII:949741-950157 1.0000 100 chrIII:28846-29032 1.0000 100 chrXV:980495-981035 1.0000 100 chrXVI:560017-560493 1.0000 100 chrX:414806-414906 1.0000 100 chrVIII:121358-121774 1.0000 100 chrXI:84005-84432 1.0000 100 chrXIV:26423-26596 1.0000 100 chrIV:308032-308366 1.0000 100 chrIV:1362332-1362590 1.0000 100 chrXIII:626450-626904 1.0000 100 chrXV:228136-228543 1.0000 100 chrVII:774157-774602 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 572 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 57200 N= 572 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.303 C 0.197 G 0.197 T 0.303 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background): A 0.313 C 0.187 G 0.187 T 0.313 ******************************************************************************** ******************************************************************************** MOTIF BSGGRRTCGAACCSVKGAYCT MEME-1 width = 21 sites = 84 llr = 1465 E-value = 5.6e-289 ******************************************************************************** -------------------------------------------------------------------------------- Motif BSGGRRTCGAACCSVKGAYCT MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::3:54:::aa::13127::: pos.-specific C 44:::1:8:::a7531::673 probability G 457a43::a::::44581:1: matrix T 3::::2a2::::2::3:2426 bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 * **** * Relative 1.5 * ****** * Entropy 1.2 * ******* * * (25.2 bits) 1.0 *** ******** * ** 0.7 ***** ******** * *** 0.5 ***** *************** 0.2 ***** *************** 0.0 --------------------- Multilevel CGGGAATCGAACCCGGGACCT consensus GCA GG GCTATT C sequence T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRRTCGAACCSVKGAYCT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrIII:123431-123816 + 13 1.75e-12 TGGGGCGAGC CGGGACTCGAACCCGGGACCT CCCGCACCCT chrV:311718-312288 + 79 3.78e-11 TTGGACGCAA CCGGAATCGAACCGATGACCT C chrI:166038-166627 - 28 3.78e-11 TTGGACGCAA CCGGAATCGAACCGATGACCT CTTCCTTGCA chrXIV:569711-570107 + 17 5.33e-11 ATGGTCTCTA GCGGGATCGAACCGCTGATCC CCGCGTTATT chrXII:1051887-1052331 + 21 5.33e-11 ATGGTCTCTA GCGGGATCGAACCGCTGATCC CCGCGTTATT chrV:551136-551532 + 10 5.33e-11 TGGTCTCTA GCGGGATCGAACCGCTGATCC CCGCGTTATT chrXII:734648-735011 - 67 5.33e-11 ATGGTCTCTA GCGGGATCGAACCGCTGATCC CCGCGTTATT chrIX:183279-183697 + 11 5.33e-11 GTGGTCTCTA GCGGGATCGAACCGCTGATCC CCGCGTTATT chrIV:667796-668330 + 3 5.33e-11 TA GCGGGATCGAACCGCTGATCC CCGCGTTATT chrXVI:819319-819789 - 69 5.33e-11 ATGGTCTCTA GCGGGATCGAACCGCTGATCC CCGCGTTATT chrX:531635-531735 - 41 8.71e-11 CTGCGCAAGC CCGGAATCGAACCGGGGGCCC AACGATGGCA chrII:197297-197941 + 69 8.71e-11 TTGCGCAAGC CCGGAATCGAACCGGGGGCCC AACGATGGCA chrXIII:183745-184144 + 13 8.71e-11 ATGCGCAAGC CCGGAATCGAACCGGGGGCCC AACGATGGCA chrXVI:572057-572508 - 78 8.71e-11 GC CCGGAATCGAACCGGGGGCCC AACGATGGCA chrIV:1075313-1075717 + 16 1.19e-10 ATGTTCCAAC CGAGGATCGAACTCGGGACCT TTGCCGTGTG chrVIII:475547-475962 + 11 1.19e-10 ATGTTCCAAC CGAGGATCGAACTCGGGACCT TTGCCGTGTG chrVII:774157-774602 - 63 1.88e-10 TTGGACGAGT CCGGAATCGAACCGGAGACCT CTCCCATGCT chrX:414806-414906 - 38 1.88e-10 TAGCCCTGTA GGGGGCTCGAACCCCTAACCT TATGATTAAG chrXI:219711-220110 - 78 1.88e-10 GT CCGGAATCGAACCGGAGACCT CTCCCATGCT chrVI:226531-226930 + 17 1.88e-10 AAGCCCTGTA GGGGGCTCGAACCCCTAACCT TATGATTAAG chrV:135242-135683 + 22 1.88e-10 AAGCCCTGTA GGGGGCTCGAACCCCTAACCT TATGATTAAG chrVIII:146018-146528 + 28 1.88e-10 TTGGACGAGT CCGGAATCGAACCGGAGACCT CTCCCATGCT chrXVI:856711-857135 - 72 1.88e-10 GGACGAGT CCGGAATCGAACCGGAGACCT CTCCCATGCT chrVII:185530-185945 + 36 1.88e-10 TAGCCCTGTA GGGGGCTCGAACCCCTAACCT TATGATTAAG chrVII:541607-542145 - 66 2.91e-10 ACTCCGATAC GGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrIV:1016941-1017482 + 55 2.91e-10 ACTCCGAAGC GGGGAGTCGAACCCCGGTCTC CACGGTGAGA chrXIV:96053-96495 + 26 2.91e-10 TTGAGCGGTA CGAGAATCGAACCCGTGTCCC CACCTTGGAA chrVII:328383-328927 - 20 2.91e-10 ACTCCGATAC GGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrXVI:210005-210450 + 24 2.91e-10 ACTCCGATAC GGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrV:354704-355310 - 19 2.91e-10 ACTCCGATAC GGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrXV:110808-111232 + 1 2.91e-10 . CGAGAATCGAACCCGTGTCCC CACCTTGGAA chrV:176882-177391 - 55 2.91e-10 ACTCCGATAC GGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrII:645005-645395 - 59 2.91e-10 ACTCCGATAC GGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrVII:779403-779860 - 77 2.91e-10 GTA CGAGAATCGAACCCGTGTCCC CACCTTGGAA chrIV:488525-489073 + 57 1.09e-09 CTGATCCAAC CGAGGTTCGAACTCGGGATCT TCGCCGTGTA chrII:326634-327065 + 2 1.09e-09 C CGAGGTTCGAACTCGGGATCT TCGCCGTGTA chrII:405686-406174 - 40 1.09e-09 GCACTCACGA TGGGGGTCGAACCCATAATCT TCTGATTAGA chrVII:736148-736587 - 65 1.09e-09 ACACTCACGA TGGGGGTCGAACCCATAATCT TCTGATTAGA chrVII:828501-828977 + 43 1.09e-09 GCACTCACGA TGGGGGTCGAACCCATAATCT TCTGATTAGA chrX:374232-374332 + 72 1.09e-09 GCACTCACGA TGGGGGTCGAACCCATAATCT TCTGATTA chrIV:568689-569210 - 25 1.09e-09 GCACTCACGA TGGGGGTCGAACCCATAATCT TCTGATTAGA chrXIII:747738-748159 + 3 1.09e-09 GA TGGGGGTCGAACCCATAATCT TCTGATTAGA chrV:138477-139022 - 9 1.09e-09 ACACTCACGA TGGGGGTCGAACCCATAATCT TCTGATTA chrXI:162288-162739 + 33 1.09e-09 ACACTCACGA TGGGGGTCGAACCCATAATCT TCTGATTAGA chrXV:438452-438949 - 59 1.09e-09 ACTCCTCATA GGGGGCTCGAACCCCTGACAT TTCGGTATCC chrXV:980495-981035 - 43 2.48e-09 AGGGGCGAGC TGGGAATTGAACCCAGGGCCT CTCGCATGCT chrXV:300877-301417 - 72 2.48e-09 GGGCGAGC TGGGAATTGAACCCAGGGCCT CTCGCATGCT chrV:130907-131341 + 17 3.86e-09 TAGGTCTTAC CCGGATTCGAACCGGGGTTGT TCGGATCAAA chrVIII:134134-134541 - 76 3.86e-09 CTAC CCGGATTCGAACCGGGGTTGT CCGGATCAAA chrXIII:420408-420857 + 15 4.78e-09 ATGATTTCGC CCAGGATCGAACTGGGGACGT TCTGCGTGTT chrXII:687660-688130 + 23 4.78e-09 ATGATTTCGC CCAGGATCGAACTGGGGACGT TCTGCGTGTT chrXV:663612-664102 + 14 4.78e-09 ACGATTTCGC CCAGGATCGAACTGGGGACGT TCTGCGTGTT chrII:266192-266650 - 50 1.07e-08 ATGCTTCCAA TCGGATTTGAACCGATGATCT CCACATTACT chrIX:174848-175309 - 46 1.07e-08 TTGCTTCCAA TCGGATTTGAACCGATGATCT CCACATTACT chrIII:295295-295752 - 54 1.07e-08 ATGCTTCCAA TCGGATTTGAACCGATGATCT CCACATTACT chrIV:434043-434532 + 36 1.07e-08 ATGCTTCCAA TCGGATTTGAACCGATGATCT CCACATTACT chrXII:818431-818812 - 80 1.18e-08 . CGGGACTCGAACCCGGATCAC AGCCACCGGA chrXIII:168602-169080 - 63 1.88e-08 ATCTCCCGGG GGCGAGTCGAACGCCCGATCT CAAGATTTCG chrXV:288002-288527 - 37 1.88e-08 ATCTCCCGGG GGCGAGTCGAACGCCCGATCT CAAGATTTCG chrX:354052-354152 - 77 1.88e-08 GGG GGCGAGTCGAACGCCCGATCT CAAGATTTCG chrIV:946066-946630 - 73 1.88e-08 TCCCGGG GGCGAGTCGAACGCCCGATCT CAAGATTTCG chrXIII:808104-808503 + 2 2.06e-08 C CCGGATTCGAACTGGGGTTGT TCGGATCAGA chrIV:1175644-1176066 - 67 2.25e-08 ATGCTCCAGG GGAGGTTCGAACTCTCGACCT TCAGATTATG chrX:422721-422821 - 51 2.25e-08 GTGCTCCAGG GGAGGTTCGAACTCTCGACCT TCAGATTATG chrXV:976215-976705 - 54 2.25e-08 TTGCTCCAGG GGAGGTTCGAACTCTCGACCT TCAGATTATG chrX:390904-391004 + 8 2.25e-08 CTCCAGG GGAGGTTCGAACTCTCGACCT TCAGATTATG chrXI:74419-74858 - 80 4.83e-08 . TGAGGGTTGAACTCACGATCT TGCGATTAAC chrVI:137290-137755 + 23 4.83e-08 ACGACCCCAG TGAGGGTTGAACTCACGATCT TGCGATTAAC chrXVI:560017-560493 + 2 5.67e-08 C TGTGGATCGAACACAGGACCT CCAGATAACT chrIV:1095140-1095641 + 39 5.67e-08 ATGCGAACTC TGTGGATCGAACACAGGACCT CCAGATATCT chrXIII:463366-463899 - 14 9.02e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTG GCACGCGACA chrXII:793726-794158 - 68 9.02e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTG GCACGCGACA chrX:541321-541421 - 57 9.02e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTG GCACGCGACA chrX:233730-233830 - 78 9.72e-08 GC CAGGACTCGAACCTGGAATCT CCTGGTTCGT chrXVI:744099-744521 - 66 2.57e-07 TTGCCACCTG TCAGAATTGAACTAACGACCT TTGCATTACA chrV:207172-207601 - 63 2.92e-07 ATGCCATCTC CTAGAATCGAACCAGGGTTTC ATCGGCCACA chrV:434353-434798 + 25 2.92e-07 ATGCCATCTC CTAGAATCGAACCAGGGTTTC ATCGGCCACA chrXIII:362872-363282 - 79 2.92e-07 C CTAGAATCGAACCAGGGTTTC ATCGGCCACA chrXVI:435743-436153 + 4 2.92e-07 CAC TCAGGATCGAACTAAGGACCA ACAGATTTGC chrV:492180-492605 + 19 3.76e-07 CCTTCCCCGC CAGGACTTGAACCTGGAATCT TCTGGTTCGT chrXII:374135-374671 - 45 3.76e-07 TCTTCCCCGC CAGGACTTGAACCTGGAATCT TCTGGTTCGT chrVII:483290-483759 - 11 4.24e-07 GAAAACAAAC CCGGTCTCGAAGCGGAGATCC GGCGATAATT chrV:99932-100373 - 73 6.38e-07 GCGCCGC TCGGTTTCGATCCGAGGACAT CAGGGTTATG chrX:517653-517753 + 11 6.38e-07 TTAGCGCCGC TCGGTTTCGATCCGAGGACAT CAGGGTTATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRRTCGAACCSVKGAYCT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123431-123816 1.7e-12 12_[+1]_67 chrV:311718-312288 3.8e-11 78_[+1]_1 chrI:166038-166627 3.8e-11 27_[-1]_52 chrXIV:569711-570107 5.3e-11 16_[+1]_63 chrXII:1051887-1052331 5.3e-11 20_[+1]_59 chrV:551136-551532 5.3e-11 9_[+1]_70 chrXII:734648-735011 5.3e-11 66_[-1]_13 chrIX:183279-183697 5.3e-11 10_[+1]_69 chrIV:667796-668330 5.3e-11 2_[+1]_77 chrXVI:819319-819789 5.3e-11 68_[-1]_11 chrX:531635-531735 8.7e-11 40_[-1]_39 chrII:197297-197941 8.7e-11 68_[+1]_11 chrXIII:183745-184144 8.7e-11 12_[+1]_67 chrXVI:572057-572508 8.7e-11 77_[-1]_2 chrIV:1075313-1075717 1.2e-10 15_[+1]_64 chrVIII:475547-475962 1.2e-10 10_[+1]_69 chrVII:774157-774602 1.9e-10 62_[-1]_17 chrX:414806-414906 1.9e-10 37_[-1]_42 chrXI:219711-220110 1.9e-10 77_[-1]_2 chrVI:226531-226930 1.9e-10 16_[+1]_63 chrV:135242-135683 1.9e-10 21_[+1]_58 chrVIII:146018-146528 1.9e-10 27_[+1]_52 chrXVI:856711-857135 1.9e-10 71_[-1]_8 chrVII:185530-185945 1.9e-10 35_[+1]_44 chrVII:541607-542145 2.9e-10 65_[-1]_14 chrIV:1016941-1017482 2.9e-10 54_[+1]_25 chrXIV:96053-96495 2.9e-10 25_[+1]_54 chrVII:328383-328927 2.9e-10 19_[-1]_60 chrXVI:210005-210450 2.9e-10 23_[+1]_56 chrV:354704-355310 2.9e-10 18_[-1]_61 chrXV:110808-111232 2.9e-10 [+1]_79 chrV:176882-177391 2.9e-10 54_[-1]_25 chrII:645005-645395 2.9e-10 58_[-1]_21 chrVII:779403-779860 2.9e-10 76_[-1]_3 chrIV:488525-489073 1.1e-09 56_[+1]_23 chrII:326634-327065 1.1e-09 1_[+1]_78 chrII:405686-406174 1.1e-09 39_[-1]_40 chrVII:736148-736587 1.1e-09 64_[-1]_15 chrVII:828501-828977 1.1e-09 42_[+1]_37 chrX:374232-374332 1.1e-09 71_[+1]_8 chrIV:568689-569210 1.1e-09 24_[-1]_55 chrXIII:747738-748159 1.1e-09 2_[+1]_77 chrV:138477-139022 1.1e-09 8_[-1]_71 chrXI:162288-162739 1.1e-09 32_[+1]_47 chrXV:438452-438949 1.1e-09 58_[-1]_21 chrXV:980495-981035 2.5e-09 42_[-1]_37 chrXV:300877-301417 2.5e-09 71_[-1]_8 chrV:130907-131341 3.9e-09 16_[+1]_63 chrVIII:134134-134541 3.9e-09 75_[-1]_4 chrXIII:420408-420857 4.8e-09 14_[+1]_65 chrXII:687660-688130 4.8e-09 22_[+1]_57 chrXV:663612-664102 4.8e-09 13_[+1]_66 chrII:266192-266650 1.1e-08 49_[-1]_30 chrIX:174848-175309 1.1e-08 45_[-1]_34 chrIII:295295-295752 1.1e-08 53_[-1]_26 chrIV:434043-434532 1.1e-08 35_[+1]_44 chrXII:818431-818812 1.2e-08 79_[-1] chrXIII:168602-169080 1.9e-08 62_[-1]_17 chrXV:288002-288527 1.9e-08 36_[-1]_43 chrX:354052-354152 1.9e-08 76_[-1]_3 chrIV:946066-946630 1.9e-08 72_[-1]_7 chrXIII:808104-808503 2.1e-08 1_[+1]_78 chrIV:1175644-1176066 2.2e-08 66_[-1]_13 chrX:422721-422821 2.2e-08 50_[-1]_29 chrXV:976215-976705 2.2e-08 53_[-1]_26 chrX:390904-391004 2.2e-08 7_[+1]_72 chrXI:74419-74858 4.8e-08 79_[-1] chrVI:137290-137755 4.8e-08 22_[+1]_57 chrXVI:560017-560493 5.7e-08 1_[+1]_78 chrIV:1095140-1095641 5.7e-08 38_[+1]_41 chrXIII:463366-463899 9e-08 13_[-1]_66 chrXII:793726-794158 9e-08 67_[-1]_12 chrX:541321-541421 9e-08 56_[-1]_23 chrX:233730-233830 9.7e-08 77_[-1]_2 chrXVI:744099-744521 2.6e-07 65_[-1]_14 chrV:207172-207601 2.9e-07 62_[-1]_17 chrV:434353-434798 2.9e-07 24_[+1]_55 chrXIII:362872-363282 2.9e-07 78_[-1]_1 chrXVI:435743-436153 2.9e-07 3_[+1]_76 chrV:492180-492605 3.8e-07 18_[+1]_61 chrXII:374135-374671 3.8e-07 44_[-1]_35 chrVII:483290-483759 4.2e-07 10_[-1]_69 chrV:99932-100373 6.4e-07 72_[-1]_7 chrX:517653-517753 6.4e-07 10_[+1]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRRTCGAACCSVKGAYCT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BSGGRRTCGAACCSVKGAYCT width=21 seqs=84 chrIII:123431-123816 ( 13) CGGGACTCGAACCCGGGACCT 1 chrV:311718-312288 ( 79) CCGGAATCGAACCGATGACCT 1 chrI:166038-166627 ( 28) CCGGAATCGAACCGATGACCT 1 chrXIV:569711-570107 ( 17) GCGGGATCGAACCGCTGATCC 1 chrXII:1051887-1052331 ( 21) GCGGGATCGAACCGCTGATCC 1 chrV:551136-551532 ( 10) GCGGGATCGAACCGCTGATCC 1 chrXII:734648-735011 ( 67) GCGGGATCGAACCGCTGATCC 1 chrIX:183279-183697 ( 11) GCGGGATCGAACCGCTGATCC 1 chrIV:667796-668330 ( 3) GCGGGATCGAACCGCTGATCC 1 chrXVI:819319-819789 ( 69) GCGGGATCGAACCGCTGATCC 1 chrX:531635-531735 ( 41) CCGGAATCGAACCGGGGGCCC 1 chrII:197297-197941 ( 69) CCGGAATCGAACCGGGGGCCC 1 chrXIII:183745-184144 ( 13) CCGGAATCGAACCGGGGGCCC 1 chrXVI:572057-572508 ( 78) CCGGAATCGAACCGGGGGCCC 1 chrIV:1075313-1075717 ( 16) CGAGGATCGAACTCGGGACCT 1 chrVIII:475547-475962 ( 11) CGAGGATCGAACTCGGGACCT 1 chrVII:774157-774602 ( 63) CCGGAATCGAACCGGAGACCT 1 chrX:414806-414906 ( 38) GGGGGCTCGAACCCCTAACCT 1 chrXI:219711-220110 ( 78) CCGGAATCGAACCGGAGACCT 1 chrVI:226531-226930 ( 17) GGGGGCTCGAACCCCTAACCT 1 chrV:135242-135683 ( 22) GGGGGCTCGAACCCCTAACCT 1 chrVIII:146018-146528 ( 28) CCGGAATCGAACCGGAGACCT 1 chrXVI:856711-857135 ( 72) CCGGAATCGAACCGGAGACCT 1 chrVII:185530-185945 ( 36) GGGGGCTCGAACCCCTAACCT 1 chrVII:541607-542145 ( 66) GGGGAGTCGAACCCCGGTCTC 1 chrIV:1016941-1017482 ( 55) GGGGAGTCGAACCCCGGTCTC 1 chrXIV:96053-96495 ( 26) CGAGAATCGAACCCGTGTCCC 1 chrVII:328383-328927 ( 20) GGGGAGTCGAACCCCGGTCTC 1 chrXVI:210005-210450 ( 24) GGGGAGTCGAACCCCGGTCTC 1 chrV:354704-355310 ( 19) GGGGAGTCGAACCCCGGTCTC 1 chrXV:110808-111232 ( 1) CGAGAATCGAACCCGTGTCCC 1 chrV:176882-177391 ( 55) GGGGAGTCGAACCCCGGTCTC 1 chrII:645005-645395 ( 59) GGGGAGTCGAACCCCGGTCTC 1 chrVII:779403-779860 ( 77) CGAGAATCGAACCCGTGTCCC 1 chrIV:488525-489073 ( 57) CGAGGTTCGAACTCGGGATCT 1 chrII:326634-327065 ( 2) CGAGGTTCGAACTCGGGATCT 1 chrII:405686-406174 ( 40) TGGGGGTCGAACCCATAATCT 1 chrVII:736148-736587 ( 65) TGGGGGTCGAACCCATAATCT 1 chrVII:828501-828977 ( 43) TGGGGGTCGAACCCATAATCT 1 chrX:374232-374332 ( 72) TGGGGGTCGAACCCATAATCT 1 chrIV:568689-569210 ( 25) TGGGGGTCGAACCCATAATCT 1 chrXIII:747738-748159 ( 3) TGGGGGTCGAACCCATAATCT 1 chrV:138477-139022 ( 9) TGGGGGTCGAACCCATAATCT 1 chrXI:162288-162739 ( 33) TGGGGGTCGAACCCATAATCT 1 chrXV:438452-438949 ( 59) GGGGGCTCGAACCCCTGACAT 1 chrXV:980495-981035 ( 43) TGGGAATTGAACCCAGGGCCT 1 chrXV:300877-301417 ( 72) TGGGAATTGAACCCAGGGCCT 1 chrV:130907-131341 ( 17) CCGGATTCGAACCGGGGTTGT 1 chrVIII:134134-134541 ( 76) CCGGATTCGAACCGGGGTTGT 1 chrXIII:420408-420857 ( 15) CCAGGATCGAACTGGGGACGT 1 chrXII:687660-688130 ( 23) CCAGGATCGAACTGGGGACGT 1 chrXV:663612-664102 ( 14) CCAGGATCGAACTGGGGACGT 1 chrII:266192-266650 ( 50) TCGGATTTGAACCGATGATCT 1 chrIX:174848-175309 ( 46) TCGGATTTGAACCGATGATCT 1 chrIII:295295-295752 ( 54) TCGGATTTGAACCGATGATCT 1 chrIV:434043-434532 ( 36) TCGGATTTGAACCGATGATCT 1 chrXII:818431-818812 ( 80) CGGGACTCGAACCCGGATCAC 1 chrXIII:168602-169080 ( 63) GGCGAGTCGAACGCCCGATCT 1 chrXV:288002-288527 ( 37) GGCGAGTCGAACGCCCGATCT 1 chrX:354052-354152 ( 77) GGCGAGTCGAACGCCCGATCT 1 chrIV:946066-946630 ( 73) GGCGAGTCGAACGCCCGATCT 1 chrXIII:808104-808503 ( 2) CCGGATTCGAACTGGGGTTGT 1 chrIV:1175644-1176066 ( 67) GGAGGTTCGAACTCTCGACCT 1 chrX:422721-422821 ( 51) GGAGGTTCGAACTCTCGACCT 1 chrXV:976215-976705 ( 54) GGAGGTTCGAACTCTCGACCT 1 chrX:390904-391004 ( 8) GGAGGTTCGAACTCTCGACCT 1 chrXI:74419-74858 ( 80) TGAGGGTTGAACTCACGATCT 1 chrVI:137290-137755 ( 23) TGAGGGTTGAACTCACGATCT 1 chrXVI:560017-560493 ( 2) TGTGGATCGAACACAGGACCT 1 chrIV:1095140-1095641 ( 39) TGTGGATCGAACACAGGACCT 1 chrXIII:463366-463899 ( 14) GGGGAATTGAACCCCGATCTG 1 chrXII:793726-794158 ( 68) GGGGAATTGAACCCCGATCTG 1 chrX:541321-541421 ( 57) GGGGAATTGAACCCCGATCTG 1 chrX:233730-233830 ( 78) CAGGACTCGAACCTGGAATCT 1 chrXVI:744099-744521 ( 66) TCAGAATTGAACTAACGACCT 1 chrV:207172-207601 ( 63) CTAGAATCGAACCAGGGTTTC 1 chrV:434353-434798 ( 25) CTAGAATCGAACCAGGGTTTC 1 chrXIII:362872-363282 ( 79) CTAGAATCGAACCAGGGTTTC 1 chrXVI:435743-436153 ( 4) TCAGGATCGAACTAAGGACCA 1 chrV:492180-492605 ( 19) CAGGACTTGAACCTGGAATCT 1 chrXII:374135-374671 ( 45) CAGGACTTGAACCTGGAATCT 1 chrVII:483290-483759 ( 11) CCGGTCTCGAAGCGGAGATCC 1 chrV:99932-100373 ( 73) TCGGTTTCGATCCGAGGACAT 1 chrX:517653-517753 ( 11) TCGGTTTCGATCCGAGGACAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRRTCGAACCSVKGAYCT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 45760 bayes= 8.5808 E= 5.6e-289 -1304 103 94 -26 -313 103 155 -313 -33 -197 186 -372 -1304 -1304 242 -1304 77 -1304 120 -313 49 -51 42 -81 -1304 -1304 -1304 167 -1304 216 -1304 -91 -1304 -1304 242 -1304 167 -1304 -1304 -1304 164 -1304 -1304 -372 -1304 240 -397 -1304 -372 198 -197 -72 -240 155 94 -313 -13 73 94 -272 -240 -51 131 14 -47 -1304 205 -1304 114 -1304 -139 -40 -1304 158 -1304 49 -272 196 -139 -102 -471 73 -238 104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRRTCGAACCSVKGAYCT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 84 E= 5.6e-289 0.000000 0.380952 0.357143 0.261905 0.035714 0.380952 0.547619 0.035714 0.250000 0.047619 0.678571 0.023810 0.000000 0.000000 1.000000 0.000000 0.535714 0.000000 0.428571 0.035714 0.440476 0.130952 0.250000 0.178571 0.000000 0.000000 0.000000 1.000000 0.000000 0.833333 0.000000 0.166667 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.976190 0.000000 0.000000 0.023810 0.000000 0.988095 0.011905 0.000000 0.023810 0.738095 0.047619 0.190476 0.059524 0.547619 0.357143 0.035714 0.285714 0.309524 0.357143 0.047619 0.059524 0.130952 0.464286 0.345238 0.226190 0.000000 0.773810 0.000000 0.690476 0.000000 0.071429 0.238095 0.000000 0.559524 0.000000 0.440476 0.047619 0.726190 0.071429 0.154762 0.011905 0.309524 0.035714 0.642857 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRRTCGAACCSVKGAYCT MEME-1 regular expression -------------------------------------------------------------------------------- [CGT][GC][GA]G[AG][AG]TCGAACC[CG][GCA][GT][GA][AT][CT]C[TC] -------------------------------------------------------------------------------- Time 425.86 secs. ******************************************************************************** ******************************************************************************** MOTIF SSCYTWWMCMACTVGGCCAM MEME-2 width = 20 sites = 114 llr = 1718 E-value = 4.7e-310 ******************************************************************************** -------------------------------------------------------------------------------- Motif SSCYTWWMCMACTVGGCCAM MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1111:454:3a::322::a4 pos.-specific C 44743115a5:8:22:a9:5 probability G 55211:1::2:::468:::: matrix T :::4653::::2a1:::1:2 bits 2.4 * * 2.2 * * 1.9 * * 1.7 * ** *** Relative 1.5 * *** **** Entropy 1.2 * * *** **** (21.7 bits) 1.0 * * * *** **** 0.7 *** * ** *** ***** 0.5 *** * ****** ****** 0.2 ******************** 0.0 -------------------- Multilevel GGCTTTACCCACTGGGCCAC consensus CC CCATA A AAA A sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYTWWMCMACTVGGCCAM MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chrVI:191340-191801 + 68 1.91e-11 AGCAGGGCAT CGCCTTAACCACTCGGCCAC TGGGACAGAA chrXII:784177-784564 - 40 1.91e-11 TAGCAGGCAT CGCCTTAACCACTCGGCCAC TGGGACGGTT chrIV:1150669-1151130 + 67 1.91e-11 TAGCAGGCAT CGCCTTAACCACTCGGCCAC TGGGACTGAA chrVIII:132878-133371 + 8 1.15e-10 AATCTTT CGCCTTAACCACTCGGCCAA GTTGCCACTT chrIV:980829-981273 + 29 1.15e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAA GTTGCCTCAA chrXIII:259024-259461 + 22 1.15e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAA GTTGCCATAC chrI:182378-182852 + 13 1.15e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAA GTTGCCAAAA chrII:226840-227364 - 29 1.15e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAA GTTGCCTCGT chrV:86426-86818 - 38 1.15e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAA GTTGCCATAA chrIV:1305450-1305856 - 33 1.15e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAA GTTGCCTTAA chrXIV:569711-570107 + 56 2.68e-10 TTAGCACGGT GCCTTAACCAACTGGGCCAA GAGACCACTG chrVII:738920-739336 - 50 2.68e-10 TTAGCACGGT GCCTTAACCAACTGGGCCAA GAGACCTATT chrXII:1051887-1052331 + 60 2.68e-10 TTAGCACGGT GCCTTAACCAACTGGGCCAA GAGACCATGA chrV:443073-443475 + 26 2.68e-10 TTAGCACGGT GCCTTAACCAACTGGGCCAA GAGACCAAAT chrV:551136-551532 + 49 2.68e-10 TTAGCACGGT GCCTTAACCAACTGGGCCAA GAGACCTGTA chrXII:734648-735011 - 29 2.68e-10 TTAGCACGGT GCCTTAACCAACTGGGCCAA GAGACCAAAC chrIX:183279-183697 + 50 2.68e-10 TTAGCACGGT GCCTTAACCAACTGGGCCAA GAGACCAGGA chrIV:667796-668330 + 42 2.68e-10 TTAGCACGGT GCCTTAACCAACTGGGCCAA GAGACCAATT chrXVI:819319-819789 - 31 2.68e-10 TTAGCACGGT GCCTTAACCAACTGGGCCAA GAGACCATTC chrIII:227755-228193 - 24 4.05e-10 TCGAGTCTCT CGCCTTAACCACTCGGCCAT AGTGCCATTT chrXVI:689378-689843 - 11 4.05e-10 TCAAGTCTGT CGCCTTAACCACTCGGCCAT AGTGCCCAAA chrXII:731892-732292 - 54 4.05e-10 TAAATCTGAC GCCTTAAACCACTCGGCCAA ACTCCCATTG chrXII:592378-592883 + 14 4.05e-10 TAAATCTGAC GCCTTAAACCACTCGGCCAA ACTCCCATTG chrXI:84005-84432 - 46 2.75e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAA CCCTCCATAC chrII:9386-9801 - 46 2.75e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAA CCCTCCACGA chrX:424336-424436 + 22 2.75e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAA CCCTCCATCT chrXII:962860-963279 + 11 2.75e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAA CCCTCCGTCG chrII:266192-266650 - 13 3.76e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCAT AGAAGCAGTT chrIX:174848-175309 - 9 3.76e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCAT AGAAGCTC chrVIII:115964-116374 + 35 3.76e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCAT AGAAGCTCTA chrIII:295295-295752 - 17 3.76e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCAT AGAAGCTTAA chrIV:434043-434532 + 74 3.76e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCAT AGAAGCT chrXV:113615-113997 - 52 3.76e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCAT AGAAGCTAAA chrX:59000-59100 + 19 3.76e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCAT AGAAGCTTCT chrVII:774157-774602 - 26 4.35e-09 GCTAAGGGAG CGCGCTACCGACTACGCCAC ACGCCCAATT chrXI:219711-220110 - 41 4.35e-09 GCTAAGGGAG CGCGCTACCGACTACGCCAC ACGCCCTATT chrVIII:146018-146528 + 66 4.35e-09 GCTAAGGGAG CGCGCTACCGACTACGCCAC ACGCCCTGAT chrXVI:856711-857135 - 35 4.35e-09 GCTAAGGGAG CGCGCTACCGACTACGCCAC ACGCCCGAAT chrXV:228136-228543 - 48 8.90e-09 ACAGTCGCAC GCCTTAACCAACTTGGCCAT GGAGTCTAAT chrXI:74419-74858 - 42 8.90e-09 ACAGTCGCAC GCCTTAACCAACTTGGCCAT GGAGTCTAAT chrXVI:810421-810902 - 71 8.90e-09 ACAGTCGCAC GCCTTAACCAACTTGGCCAT GGAGTCGCAA chrXII:975862-976232 + 34 8.90e-09 ACAGTCGCAC GCCTTAACCAACTTGGCCAT GGAGTCTTTT chrVI:137290-137755 + 62 8.90e-09 ACAGTCGCAC GCCTTAACCAACTTGGCCAT GGAGTCAGTC chrIII:127547-127894 - 52 8.90e-09 ACAGTCGCAC GCCTTAACCAACTTGGCCAT GGAGTCATTT chrX:233730-233830 - 41 1.02e-08 CGTAGCCAGA CGCCGTGACCATTGGGCCAC GAGGAACAAG chrV:492180-492605 + 57 1.02e-08 CGTAGCCAGA CGCCGTGACCATTGGGCCAC GAGGAATAGG chrXI:490771-491186 - 46 1.02e-08 CGTAGCCAGA CGCCGTGACCATTGGGCCAC GAGGAACAAG chrXII:374135-374671 - 8 1.02e-08 CGTAGCCAGA CGCCGTGACCATTGGGCCAC GAGGAAC chrVII:794223-794627 - 48 1.17e-08 GCAAGGGAAG CGCGCTACCAACTGCGCCAT GTGCCCGCAA chrXII:214750-215144 + 33 1.17e-08 GCAAGGGAAG CGCGCTACCAACTGCGCCAT GTGCCCTAAA chrXIII:372321-372710 + 28 2.82e-08 TTAAGCAGAT GCCATAACCGACTAGACCAC GAAACCAGGT chrXI:308023-308392 + 35 2.82e-08 TTAAGCAGAT GCCATAACCGACTAGACCAC GAAACCACTT chrVIII:85203-85556 + 17 2.82e-08 TTAAGCAGAT GCCATAACCGACTAGACCAC GAAACCAAAT chrV:438517-438906 - 45 2.82e-08 TTAAGCAGAT GCCATAACCGACTAGACCAC GAAACCTAAT chrVII:73696-74110 + 24 2.82e-08 TTAAGCAGAT GCCATAACCGACTAGACCAC GAAACCACTT chrXIII:420408-420857 + 54 2.82e-08 TTAAGCAGAT GCCATAACCGACTAGACCAC GAAACCTGTT chrXII:687660-688130 + 62 2.82e-08 TTAAGCAGAT GCCATAACCGACTAGACCAC GAAACCTATT chrVII:823280-823700 - 48 2.82e-08 TTAAGCAGAT GCCATAACCGACTAGACCAC GAAACCACTC chrVII:412154-412561 + 35 2.82e-08 TTAAGCAGAT GCCATAACCGACTAGACCAC GAAACCAGTT chrXV:663612-664102 + 53 2.82e-08 TTAAGCAGAT GCCATAACCGACTAGACCAC GAAACCACTA chrXVI:768969-769617 + 34 5.03e-08 AAAAGCCGAA CGCTCTACCAACTGAGCTAA CAAGGATGAG chrVII:115284-115736 - 34 5.03e-08 AAAAGCCGAA CGCTCTACCAACTGAGCTAA CAAGGATGAG chrIX:300083-300510 + 29 5.62e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAA CAAGGCTATT chrVI:226531-226930 + 55 5.62e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAA CAAGGCATTT chrV:135242-135683 + 60 5.62e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAA CAAGGCTTTT chrVII:185530-185945 + 74 5.62e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAA CAAGGCT chrIV:1201518-1202005 - 45 5.62e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAA CAAGGCTATT chrIV:884177-884596 - 31 8.62e-08 ATAAGCACGA AGCTCTAACCACTGAGCTAC ACGAGCATTT chrIV:1461578-1462039 + 46 9.56e-08 TGAATCAGGC GCCTTAGACCGCTCGGCCAA ACAACCACTT chrVII:857260-857670 + 51 9.56e-08 TGAATCAGGC GCCTTAGACCGCTCGGCCAA ACAACCACTT chrXII:628195-628650 - 17 9.56e-08 TGAATCAGGC GCCTTAGACCGCTCGGCCAA ACAACCACTT chrXV:281966-282358 - 58 1.57e-07 TGGCAACGTT GGATTTTACCACTAAACCAC TTGCGCGCTT chrXVI:860191-860579 - 50 1.57e-07 TGGCAACGTT GGATTTTACCACTAAACCAC TTGCGCTTGT chrX:531635-531735 - 6 1.57e-07 TGGCAACGTT GGATTTTACCACTAAACCAC TTGCG chrVI:162040-162400 - 64 1.57e-07 TGGCAACGTT GGATTTTACCACTAAACCAC TTGCGCTTGT chrIV:83367-83732 - 55 1.57e-07 TGGCAACGTT GGATTTTACCACTAAACCAC TTGCGCTAAG chrXIII:183745-184144 + 49 1.57e-07 TGGCAACGTT GGATTTTACCACTAAACCAC TTGCGCGATC chrXVI:572057-572508 - 43 1.57e-07 TGGCAACGTT GGATTTTACCACTAAACCAC TTGCGCGAAG chrV:99932-100373 - 37 2.29e-07 TATGAGCCCT GCGCGCTTCCACTGCGCCAC GGCGCTTAGC chrX:517653-517753 + 48 2.29e-07 TATGAGCCCT GCGCGCTTCCACTGCGCCAC GGCGCTTAAC chrXV:710014-710382 - 59 2.29e-07 TATGAGCCCT GCGCGCTTCCACTGCGCCAC GGCGCTGCTA chrXVI:338730-339099 + 30 2.29e-07 TATGAGCCCT GCGCGCTTCCACTGCGCCAC GGCGCTGCTA chrXVI:560017-560493 + 59 2.74e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAA ATCCGCTCAA chrXVI:622388-622824 + 50 2.74e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAA ATCCGCATAT chrII:36221-36592 - 48 2.74e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAA ATCCGCTTAC chrXIII:352092-352454 - 63 2.74e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAA ATCCGCTTAT chrVIII:358322-358766 + 50 2.74e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAA ATCCGCTTAC chrIV:1175644-1176066 - 30 2.74e-07 ATGAGACTGA CGCTCTTCCTACTGAGCTAC TGAAGCTTTG chrX:422721-422821 - 14 2.74e-07 ATGAGACTGA CGCTCTTCCTACTGAGCTAC TGAAGCATAC chrXV:976215-976705 - 17 2.74e-07 ATGAGACTGA CGCTCTTCCTACTGAGCTAC TGAAGCGCAC chrX:390904-391004 + 46 2.74e-07 ATGAGACTGA CGCTCTTCCTACTGAGCTAC TGAAGCACTA chrXV:300877-301417 - 6 4.96e-07 CCCAAAGCGA GAATCATACCACTAGACCAC ACGCC chrVIII:388751-389185 + 52 4.96e-07 CCCAAAGCGA GAATCATACCACTAGACCAC ACGCCCATGT chrI:138970-139368 - 39 4.96e-07 CCCAAAGCGA GAATCATACCACTAGACCAC ACGCCCGTAC chrXIV:546868-547361 - 36 4.96e-07 CCCAAAGCGA GAATCATACCACTAGACCAC ACGCCCGATT chrII:326634-327065 + 41 8.55e-07 TAAAGGCGAC GTCTTGAACCACTGGACCAT TGGACCCGGA chrXVI:435743-436153 + 41 8.55e-07 TTGCAATCTG CTGCGCTACCACTGCGCCAT ACGAGCTTTT chrXVI:775646-776017 + 30 8.55e-07 TTGCAATCTG CTGCGCTACCACTGCGCCAT ACGAGCTTTT chrVII:706928-707419 + 31 8.55e-07 TTGCAATCTG CTGCGCTACCACTGCGCCAT ACGAGCTTGA chrX:538367-538467 - 54 9.90e-07 TAGGAGGGAG ACGCGTTACCATTACGCCAA CGGAACCAAC chrXVI:744099-744521 - 30 1.50e-06 TACAAGTGCA ACGCTCTACCACTAAGCTAA GGAGGCTTTT chrVII:661555-661930 - 63 1.50e-06 TACAAGTGCA ACGCTCTACCACTAAGCTAA GGAGGCAAAT chrX:415829-415929 + 14 1.83e-06 TTGGAGTCGA AAGCTCTACCATTGAGCCAC CGCTTCAACT chrXI:302714-303172 - 31 1.83e-06 TTGGAGTCGA AAGCTCTACCATTGAGCCAC CGCTTCATCT chrVII:878577-879003 + 50 1.83e-06 TTGGAGTCGA AAGCTCTACCATTGAGCCAC CGCTTCATCT chrXIII:379191-379578 + 49 1.83e-06 TTGGAGTCGA AAGCTCTACCATTGAGCCAC CGCTTCAACT chrVII:405185-405741 - 63 2.08e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCAC GCGAGCTACT chrVII:736148-736587 - 29 2.08e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCAC GCGAGCTATT chrXIII:747738-748159 + 40 2.08e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCAC GCGAGCTAGT chrXI:162288-162739 + 70 2.08e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCAC GCGAGCTAAT chrXI:27-246 + 63 2.99e-06 TCCACTCGTT ACCCTGCCCCACTCAACCAT ACCACTCCCA chrIII:123431-123816 + 50 5.14e-06 CCCTAAGCGA GAATCATACCTCTAGACCAC ACGCCCTCCT chrXIV:631712-632102 + 35 5.14e-06 CCCTAAGCGA GAATCATACCTCTAGACCAC ACGCCCGGTA chrXII:489292-489578 - 40 7.92e-06 AGTTTCGCGT ATGGTCACCCACTACACTAC TCGGTCAGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYTWWMCMACTVGGCCAM MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVI:191340-191801 1.9e-11 67_[+2]_13 chrXII:784177-784564 1.9e-11 39_[-2]_41 chrIV:1150669-1151130 1.9e-11 66_[+2]_14 chrVIII:132878-133371 1.2e-10 7_[+2]_73 chrIV:980829-981273 1.2e-10 28_[+2]_52 chrXIII:259024-259461 1.2e-10 21_[+2]_59 chrI:182378-182852 1.2e-10 12_[+2]_68 chrII:226840-227364 1.2e-10 28_[-2]_52 chrV:86426-86818 1.2e-10 37_[-2]_43 chrIV:1305450-1305856 1.2e-10 32_[-2]_48 chrXIV:569711-570107 2.7e-10 55_[+2]_25 chrVII:738920-739336 2.7e-10 49_[-2]_31 chrXII:1051887-1052331 2.7e-10 59_[+2]_21 chrV:443073-443475 2.7e-10 25_[+2]_55 chrV:551136-551532 2.7e-10 48_[+2]_32 chrXII:734648-735011 2.7e-10 28_[-2]_52 chrIX:183279-183697 2.7e-10 49_[+2]_31 chrIV:667796-668330 2.7e-10 41_[+2]_39 chrXVI:819319-819789 2.7e-10 30_[-2]_50 chrIII:227755-228193 4.1e-10 23_[-2]_57 chrXVI:689378-689843 4.1e-10 10_[-2]_70 chrXII:731892-732292 4.1e-10 53_[-2]_27 chrXII:592378-592883 4.1e-10 13_[+2]_67 chrXI:84005-84432 2.8e-09 45_[-2]_35 chrII:9386-9801 2.8e-09 45_[-2]_35 chrX:424336-424436 2.8e-09 21_[+2]_59 chrXII:962860-963279 2.8e-09 10_[+2]_70 chrII:266192-266650 3.8e-09 12_[-2]_68 chrIX:174848-175309 3.8e-09 8_[-2]_72 chrVIII:115964-116374 3.8e-09 34_[+2]_46 chrIII:295295-295752 3.8e-09 16_[-2]_64 chrIV:434043-434532 3.8e-09 73_[+2]_7 chrXV:113615-113997 3.8e-09 51_[-2]_29 chrX:59000-59100 3.8e-09 18_[+2]_62 chrVII:774157-774602 4.4e-09 25_[-2]_55 chrXI:219711-220110 4.4e-09 40_[-2]_40 chrVIII:146018-146528 4.4e-09 65_[+2]_15 chrXVI:856711-857135 4.4e-09 34_[-2]_46 chrXV:228136-228543 8.9e-09 47_[-2]_33 chrXI:74419-74858 8.9e-09 41_[-2]_39 chrXVI:810421-810902 8.9e-09 70_[-2]_10 chrXII:975862-976232 8.9e-09 33_[+2]_47 chrVI:137290-137755 8.9e-09 61_[+2]_19 chrIII:127547-127894 8.9e-09 51_[-2]_29 chrX:233730-233830 1e-08 40_[-2]_40 chrV:492180-492605 1e-08 56_[+2]_24 chrXI:490771-491186 1e-08 45_[-2]_35 chrXII:374135-374671 1e-08 7_[-2]_73 chrVII:794223-794627 1.2e-08 47_[-2]_33 chrXII:214750-215144 1.2e-08 32_[+2]_48 chrXIII:372321-372710 2.8e-08 27_[+2]_53 chrXI:308023-308392 2.8e-08 34_[+2]_46 chrVIII:85203-85556 2.8e-08 16_[+2]_64 chrV:438517-438906 2.8e-08 44_[-2]_36 chrVII:73696-74110 2.8e-08 23_[+2]_57 chrXIII:420408-420857 2.8e-08 53_[+2]_27 chrXII:687660-688130 2.8e-08 61_[+2]_19 chrVII:823280-823700 2.8e-08 47_[-2]_33 chrVII:412154-412561 2.8e-08 34_[+2]_46 chrXV:663612-664102 2.8e-08 52_[+2]_28 chrXVI:768969-769617 5e-08 33_[+2]_47 chrVII:115284-115736 5e-08 33_[-2]_47 chrIX:300083-300510 5.6e-08 28_[+2]_52 chrVI:226531-226930 5.6e-08 54_[+2]_26 chrV:135242-135683 5.6e-08 59_[+2]_21 chrVII:185530-185945 5.6e-08 73_[+2]_7 chrIV:1201518-1202005 5.6e-08 44_[-2]_36 chrIV:884177-884596 8.6e-08 30_[-2]_50 chrIV:1461578-1462039 9.6e-08 45_[+2]_35 chrVII:857260-857670 9.6e-08 50_[+2]_30 chrXII:628195-628650 9.6e-08 16_[-2]_64 chrXV:281966-282358 1.6e-07 57_[-2]_23 chrXVI:860191-860579 1.6e-07 49_[-2]_31 chrX:531635-531735 1.6e-07 5_[-2]_75 chrVI:162040-162400 1.6e-07 63_[-2]_17 chrIV:83367-83732 1.6e-07 54_[-2]_26 chrXIII:183745-184144 1.6e-07 48_[+2]_32 chrXVI:572057-572508 1.6e-07 42_[-2]_38 chrV:99932-100373 2.3e-07 36_[-2]_44 chrX:517653-517753 2.3e-07 47_[+2]_33 chrXV:710014-710382 2.3e-07 58_[-2]_22 chrXVI:338730-339099 2.3e-07 29_[+2]_51 chrXVI:560017-560493 2.7e-07 58_[+2]_22 chrXVI:622388-622824 2.7e-07 49_[+2]_31 chrII:36221-36592 2.7e-07 47_[-2]_33 chrXIII:352092-352454 2.7e-07 62_[-2]_18 chrVIII:358322-358766 2.7e-07 49_[+2]_31 chrIV:1175644-1176066 2.7e-07 29_[-2]_51 chrX:422721-422821 2.7e-07 13_[-2]_67 chrXV:976215-976705 2.7e-07 16_[-2]_64 chrX:390904-391004 2.7e-07 45_[+2]_35 chrXV:300877-301417 5e-07 5_[-2]_75 chrVIII:388751-389185 5e-07 51_[+2]_29 chrI:138970-139368 5e-07 38_[-2]_42 chrXIV:546868-547361 5e-07 35_[-2]_45 chrII:326634-327065 8.5e-07 40_[+2]_40 chrXVI:435743-436153 8.5e-07 40_[+2]_40 chrXVI:775646-776017 8.5e-07 29_[+2]_51 chrVII:706928-707419 8.5e-07 30_[+2]_50 chrX:538367-538467 9.9e-07 53_[-2]_27 chrXVI:744099-744521 1.5e-06 29_[-2]_51 chrVII:661555-661930 1.5e-06 62_[-2]_18 chrX:415829-415929 1.8e-06 13_[+2]_67 chrXI:302714-303172 1.8e-06 30_[-2]_50 chrVII:878577-879003 1.8e-06 49_[+2]_31 chrXIII:379191-379578 1.8e-06 48_[+2]_32 chrVII:405185-405741 2.1e-06 62_[-2]_18 chrVII:736148-736587 2.1e-06 28_[-2]_52 chrXIII:747738-748159 2.1e-06 39_[+2]_41 chrXI:162288-162739 2.1e-06 69_[+2]_11 chrXI:27-246 3e-06 62_[+2]_18 chrIII:123431-123816 5.1e-06 49_[+2]_31 chrXIV:631712-632102 5.1e-06 34_[+2]_46 chrXII:489292-489578 7.9e-06 39_[-2]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYTWWMCMACTVGGCCAM MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SSCYTWWMCMACTVGGCCAM width=20 seqs=114 chrVI:191340-191801 ( 68) CGCCTTAACCACTCGGCCAC 1 chrXII:784177-784564 ( 40) CGCCTTAACCACTCGGCCAC 1 chrIV:1150669-1151130 ( 67) CGCCTTAACCACTCGGCCAC 1 chrVIII:132878-133371 ( 8) CGCCTTAACCACTCGGCCAA 1 chrIV:980829-981273 ( 29) CGCCTTAACCACTCGGCCAA 1 chrXIII:259024-259461 ( 22) CGCCTTAACCACTCGGCCAA 1 chrI:182378-182852 ( 13) CGCCTTAACCACTCGGCCAA 1 chrII:226840-227364 ( 29) CGCCTTAACCACTCGGCCAA 1 chrV:86426-86818 ( 38) CGCCTTAACCACTCGGCCAA 1 chrIV:1305450-1305856 ( 33) CGCCTTAACCACTCGGCCAA 1 chrXIV:569711-570107 ( 56) GCCTTAACCAACTGGGCCAA 1 chrVII:738920-739336 ( 50) GCCTTAACCAACTGGGCCAA 1 chrXII:1051887-1052331 ( 60) GCCTTAACCAACTGGGCCAA 1 chrV:443073-443475 ( 26) GCCTTAACCAACTGGGCCAA 1 chrV:551136-551532 ( 49) GCCTTAACCAACTGGGCCAA 1 chrXII:734648-735011 ( 29) GCCTTAACCAACTGGGCCAA 1 chrIX:183279-183697 ( 50) GCCTTAACCAACTGGGCCAA 1 chrIV:667796-668330 ( 42) GCCTTAACCAACTGGGCCAA 1 chrXVI:819319-819789 ( 31) GCCTTAACCAACTGGGCCAA 1 chrIII:227755-228193 ( 24) CGCCTTAACCACTCGGCCAT 1 chrXVI:689378-689843 ( 11) CGCCTTAACCACTCGGCCAT 1 chrXII:731892-732292 ( 54) GCCTTAAACCACTCGGCCAA 1 chrXII:592378-592883 ( 14) GCCTTAAACCACTCGGCCAA 1 chrXI:84005-84432 ( 46) GCCTTAGACCACTCGGCCAA 1 chrII:9386-9801 ( 46) GCCTTAGACCACTCGGCCAA 1 chrX:424336-424436 ( 22) GCCTTAGACCACTCGGCCAA 1 chrXII:962860-963279 ( 11) GCCTTAGACCACTCGGCCAA 1 chrII:266192-266650 ( 13) CGCCTTACCAACTTGGCCAT 1 chrIX:174848-175309 ( 9) CGCCTTACCAACTTGGCCAT 1 chrVIII:115964-116374 ( 35) CGCCTTACCAACTTGGCCAT 1 chrIII:295295-295752 ( 17) CGCCTTACCAACTTGGCCAT 1 chrIV:434043-434532 ( 74) CGCCTTACCAACTTGGCCAT 1 chrXV:113615-113997 ( 52) CGCCTTACCAACTTGGCCAT 1 chrX:59000-59100 ( 19) CGCCTTACCAACTTGGCCAT 1 chrVII:774157-774602 ( 26) CGCGCTACCGACTACGCCAC 1 chrXI:219711-220110 ( 41) CGCGCTACCGACTACGCCAC 1 chrVIII:146018-146528 ( 66) CGCGCTACCGACTACGCCAC 1 chrXVI:856711-857135 ( 35) CGCGCTACCGACTACGCCAC 1 chrXV:228136-228543 ( 48) GCCTTAACCAACTTGGCCAT 1 chrXI:74419-74858 ( 42) GCCTTAACCAACTTGGCCAT 1 chrXVI:810421-810902 ( 71) GCCTTAACCAACTTGGCCAT 1 chrXII:975862-976232 ( 34) GCCTTAACCAACTTGGCCAT 1 chrVI:137290-137755 ( 62) GCCTTAACCAACTTGGCCAT 1 chrIII:127547-127894 ( 52) GCCTTAACCAACTTGGCCAT 1 chrX:233730-233830 ( 41) CGCCGTGACCATTGGGCCAC 1 chrV:492180-492605 ( 57) CGCCGTGACCATTGGGCCAC 1 chrXI:490771-491186 ( 46) CGCCGTGACCATTGGGCCAC 1 chrXII:374135-374671 ( 8) CGCCGTGACCATTGGGCCAC 1 chrVII:794223-794627 ( 48) CGCGCTACCAACTGCGCCAT 1 chrXII:214750-215144 ( 33) CGCGCTACCAACTGCGCCAT 1 chrXIII:372321-372710 ( 28) GCCATAACCGACTAGACCAC 1 chrXI:308023-308392 ( 35) GCCATAACCGACTAGACCAC 1 chrVIII:85203-85556 ( 17) GCCATAACCGACTAGACCAC 1 chrV:438517-438906 ( 45) GCCATAACCGACTAGACCAC 1 chrVII:73696-74110 ( 24) GCCATAACCGACTAGACCAC 1 chrXIII:420408-420857 ( 54) GCCATAACCGACTAGACCAC 1 chrXII:687660-688130 ( 62) GCCATAACCGACTAGACCAC 1 chrVII:823280-823700 ( 48) GCCATAACCGACTAGACCAC 1 chrVII:412154-412561 ( 35) GCCATAACCGACTAGACCAC 1 chrXV:663612-664102 ( 53) GCCATAACCGACTAGACCAC 1 chrXVI:768969-769617 ( 34) CGCTCTACCAACTGAGCTAA 1 chrVII:115284-115736 ( 34) CGCTCTACCAACTGAGCTAA 1 chrIX:300083-300510 ( 29) CGCGCTACCGATTGCGCCAA 1 chrVI:226531-226930 ( 55) CGCGCTACCGATTGCGCCAA 1 chrV:135242-135683 ( 60) CGCGCTACCGATTGCGCCAA 1 chrVII:185530-185945 ( 74) CGCGCTACCGATTGCGCCAA 1 chrIV:1201518-1202005 ( 45) CGCGCTACCGATTGCGCCAA 1 chrIV:884177-884596 ( 31) AGCTCTAACCACTGAGCTAC 1 chrIV:1461578-1462039 ( 46) GCCTTAGACCGCTCGGCCAA 1 chrVII:857260-857670 ( 51) GCCTTAGACCGCTCGGCCAA 1 chrXII:628195-628650 ( 17) GCCTTAGACCGCTCGGCCAA 1 chrXV:281966-282358 ( 58) GGATTTTACCACTAAACCAC 1 chrXVI:860191-860579 ( 50) GGATTTTACCACTAAACCAC 1 chrX:531635-531735 ( 6) GGATTTTACCACTAAACCAC 1 chrVI:162040-162400 ( 64) GGATTTTACCACTAAACCAC 1 chrIV:83367-83732 ( 55) GGATTTTACCACTAAACCAC 1 chrXIII:183745-184144 ( 49) GGATTTTACCACTAAACCAC 1 chrXVI:572057-572508 ( 43) GGATTTTACCACTAAACCAC 1 chrV:99932-100373 ( 37) GCGCGCTTCCACTGCGCCAC 1 chrX:517653-517753 ( 48) GCGCGCTTCCACTGCGCCAC 1 chrXV:710014-710382 ( 59) GCGCGCTTCCACTGCGCCAC 1 chrXVI:338730-339099 ( 30) GCGCGCTTCCACTGCGCCAC 1 chrXVI:560017-560493 ( 59) CGCTCTCCCAACTGAGCTAA 1 chrXVI:622388-622824 ( 50) CGCTCTCCCAACTGAGCTAA 1 chrII:36221-36592 ( 48) CGCTCTCCCAACTGAGCTAA 1 chrXIII:352092-352454 ( 63) CGCTCTCCCAACTGAGCTAA 1 chrVIII:358322-358766 ( 50) CGCTCTCCCAACTGAGCTAA 1 chrIV:1175644-1176066 ( 30) CGCTCTTCCTACTGAGCTAC 1 chrX:422721-422821 ( 14) CGCTCTTCCTACTGAGCTAC 1 chrXV:976215-976705 ( 17) CGCTCTTCCTACTGAGCTAC 1 chrX:390904-391004 ( 46) CGCTCTTCCTACTGAGCTAC 1 chrXV:300877-301417 ( 6) GAATCATACCACTAGACCAC 1 chrVIII:388751-389185 ( 52) GAATCATACCACTAGACCAC 1 chrI:138970-139368 ( 39) GAATCATACCACTAGACCAC 1 chrXIV:546868-547361 ( 36) GAATCATACCACTAGACCAC 1 chrII:326634-327065 ( 41) GTCTTGAACCACTGGACCAT 1 chrXVI:435743-436153 ( 41) CTGCGCTACCACTGCGCCAT 1 chrXVI:775646-776017 ( 30) CTGCGCTACCACTGCGCCAT 1 chrVII:706928-707419 ( 31) CTGCGCTACCACTGCGCCAT 1 chrX:538367-538467 ( 54) ACGCGTTACCATTACGCCAA 1 chrXVI:744099-744521 ( 30) ACGCTCTACCACTAAGCTAA 1 chrVII:661555-661930 ( 63) ACGCTCTACCACTAAGCTAA 1 chrX:415829-415929 ( 14) AAGCTCTACCATTGAGCCAC 1 chrXI:302714-303172 ( 31) AAGCTCTACCATTGAGCCAC 1 chrVII:878577-879003 ( 50) AAGCTCTACCATTGAGCCAC 1 chrXIII:379191-379578 ( 49) AAGCTCTACCATTGAGCCAC 1 chrVII:405185-405741 ( 63) ACGCGTTGCCATTACGCCAC 1 chrVII:736148-736587 ( 29) ACGCGTTGCCATTACGCCAC 1 chrXIII:747738-748159 ( 40) ACGCGTTGCCATTACGCCAC 1 chrXI:162288-162739 ( 70) ACGCGTTGCCATTACGCCAC 1 chrXI:27-246 ( 63) ACCCTGCCCCACTCAACCAT 1 chrIII:123431-123816 ( 50) GAATCATACCTCTAGACCAC 1 chrXIV:631712-632102 ( 35) GAATCATACCTCTAGACCAC 1 chrXII:489292-489578 ( 40) ATGGTCACCCACTACACTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYTWWMCMACTVGGCCAM MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 46332 bayes= 10.8902 E= 4.7e-310 -135 117 129 -1348 -184 111 132 -284 -146 195 -16 -1348 -184 98 -83 48 -1348 45 -41 95 16 -60 -341 70 80 -183 -95 -3 48 140 -241 -316 -1348 242 -1348 -1348 -20 150 -16 -316 161 -1348 -283 -416 -1348 217 -1348 -99 -1348 -1348 -1348 167 -3 5 105 -146 -46 17 159 -1348 -46 -1348 205 -1348 -1348 242 -1348 -1348 -1348 222 -1348 -125 167 -1348 -1348 -1348 16 129 -1348 -70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYTWWMCMACTVGGCCAM MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 114 E= 4.7e-310 0.122807 0.421053 0.456140 0.000000 0.087719 0.403509 0.464912 0.043860 0.114035 0.719298 0.166667 0.000000 0.087719 0.368421 0.105263 0.438596 0.000000 0.254386 0.140351 0.605263 0.350877 0.122807 0.017544 0.508772 0.543860 0.052632 0.096491 0.307018 0.438596 0.491228 0.035088 0.035088 0.000000 1.000000 0.000000 0.000000 0.271930 0.526316 0.166667 0.035088 0.956140 0.000000 0.026316 0.017544 0.000000 0.842105 0.000000 0.157895 0.000000 0.000000 0.000000 1.000000 0.307018 0.192982 0.385965 0.114035 0.228070 0.210526 0.561404 0.000000 0.228070 0.000000 0.771930 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.868421 0.000000 0.131579 1.000000 0.000000 0.000000 0.000000 0.350877 0.456140 0.000000 0.192982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYTWWMCMACTVGGCCAM MEME-2 regular expression -------------------------------------------------------------------------------- [GC][GC]C[TC][TC][TA][AT][CA]C[CA]ACT[GA][GAC][GA]CCA[CA] -------------------------------------------------------------------------------- Time 815.57 secs. ******************************************************************************** ******************************************************************************** MOTIF SAMAASSDNRHRTGMTAACCAYTACACTAT MEME-3 width = 30 sites = 31 llr = 753 E-value = 7.6e-143 ******************************************************************************** -------------------------------------------------------------------------------- Motif SAMAASSDNRHRTGMTAACCAYTACACTAT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :75a7::33534:25:87::8::92a::a3 pos.-specific C 5:4::551223:::4:::aa:6::6:a1:1 probability G 522:35543416:6::23::2::1:::::: matrix T :1:::::33:3:a3:a:::::4a:2::9:6 bits 2.4 ** 2.2 ** * 1.9 ** * 1.7 * ** * * * Relative 1.5 * * * * * ** * **** Entropy 1.2 * * ** ** ** ** *** **** (35.0 bits) 1.0 * **** ** ********* **** 0.7 ** **** ****************** 0.5 ******* * ******************* 0.2 ******** * ******************* 0.0 ------------------------------ Multilevel GAAAACCGAAAGTGATAACCACTACACTAT consensus C C GGGATGTA TC G GT A A sequence TG C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAMAASSDNRHRTGMTAACCAYTACACTAT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrIV:520765-521151 - 70 1.51e-15 T CAAAACCGAAAGTGATAACCACTACACTAT AGGACCCTAA chrV:130907-131341 + 44 1.51e-15 TTGTTCGGAT CAAAACCGAAAGTGATAACCACTACACTAT AAAACCTCTT chrXII:448519-448946 + 4 1.51e-15 GAT CAAAACCGAAAGTGATAACCACTACACTAT AGGACCGGAA chrIV:645023-645405 + 25 1.51e-15 TTGTCCGGAT CAAAACCGAAAGTGATAACCACTACACTAT AGGACCGTAA chrV:250023-250539 - 61 1.51e-15 TTGTCCGGAT CAAAACCGAAAGTGATAACCACTACACTAT AGGACCAGTA chrVIII:134134-134541 - 40 1.51e-15 TTGTCCGGAT CAAAACCGAAAGTGATAACCACTACACTAT AGGACCGGAA chrXIII:808104-808503 + 29 4.40e-15 TTGTTCGGAT CAGAACCGAAAGTGATAACCACTACACTAT AGGACCTTTT chrVII:541607-542145 - 30 6.84e-13 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTAT ATCGGATGGT chrXII:796984-797380 - 52 6.84e-13 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTAT ATCGGACGAC chrXVI:210005-210450 + 51 6.84e-13 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTAT ATCGGACAAT chrV:176882-177391 - 19 6.84e-13 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTAT ATCGGATCAA chrII:645005-645395 - 23 6.84e-13 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTAT ATCGGATAAT chrXIV:96053-96495 + 53 2.89e-12 TCCCCACCTT GGAAGGGTGGGATGATAACCACTACACTAA CCGCCCATGT chrXV:110808-111232 + 28 2.89e-12 TCCCCACCTT GGAAGGGTGGGATGATAACCACTACACTAA CCGCCCGGGT chrVII:779403-779860 - 41 2.89e-12 TCCCCACCTT GGAAGGGTGGGATGATAACCACTACACTAA CCGCCCGGGG chrV:207172-207601 - 27 4.41e-12 TTTCATCGGC CACAACGATGTGTACTAACCACTATACTAA GATGGCGAAC chrV:434353-434798 + 52 4.41e-12 TTTCATCGGC CACAACGATGTGTACTAACCACTATACTAA GATGGCGACT chrXIII:362872-363282 - 43 4.41e-12 TTTCATCGGC CACAACGATGTGTACTAACCACTATACTAA GATGGCAAAC chrXI:313269-313656 + 25 4.41e-12 TTTCATCGGC CACAACGATGTGTACTAACCACTATACTAA GATGGCAAAC chrVII:319494-320057 - 62 4.41e-12 TTCATCGGC CACAACGATGTGTACTAACCACTATACTAA GATGGCTAAT chrIV:1075313-1075717 + 44 1.13e-11 CCTTTGCCGT GTGAAGGCAACGTGATAGCCGCTACACTAT TGGAACAATA chrVIII:475547-475962 + 39 1.13e-11 CCTTTGCCGT GTGAAGGCAACGTGATAGCCGCTACACTAT TGGAACAGAC chrVII:544446-544849 + 16 2.02e-11 TCTGGCACGC GACAAGCGCCCATTCTGACCATTAAACTAT CACGGAAGAA chrXII:793726-794158 - 32 2.02e-11 TCTGGCACGC GACAAGCGCCCATTCTGACCATTAAACTAT CACGGATTAT chrX:374232-374332 + 17 2.02e-11 TCTGGCACGC GACAAGCGCCCATTCTGACCATTAAACTAT CACGGAAGAA chrIV:568689-569210 - 71 2.02e-11 . GACAAGCGCCCATTCTGACCATTAAACTAT CACGGAAGAA chrX:541321-541421 - 21 2.02e-11 TCTGGCACGC GACAAGCGCCCATTCTGACCATTAAACTAT CACGGATTTT chrIV:1256906-1257276 + 3 3.82e-10 TT GGGAAGCATGAATTCTAACCACTGAACCAC TTTCGCTAAG chrXII:818431-818812 - 44 3.98e-10 TCACAGCCAC CGGAAGAATGCATGCTAACCATTGCACTAG AGGAGCATAA chrXV:594213-594639 + 14 4.15e-10 CCTCATGCTT GGGAAGCATAAATTCTAACCACTGAACCAC TTGCGCGTTT chrII:6553-6969 - 60 5.46e-09 TGTATCATAG CACCGGCATGAGTTTGAGCCACTACCGTAT TGTTTCTCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAMAASSDNRHRTGMTAACCAYTACACTAT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:520765-521151 1.5e-15 69_[-3]_1 chrV:130907-131341 1.5e-15 43_[+3]_27 chrXII:448519-448946 1.5e-15 3_[+3]_67 chrIV:645023-645405 1.5e-15 24_[+3]_46 chrV:250023-250539 1.5e-15 60_[-3]_10 chrVIII:134134-134541 1.5e-15 39_[-3]_31 chrXIII:808104-808503 4.4e-15 28_[+3]_42 chrVII:541607-542145 6.8e-13 29_[-3]_41 chrXII:796984-797380 6.8e-13 51_[-3]_19 chrXVI:210005-210450 6.8e-13 50_[+3]_20 chrV:176882-177391 6.8e-13 18_[-3]_52 chrII:645005-645395 6.8e-13 22_[-3]_48 chrXIV:96053-96495 2.9e-12 52_[+3]_18 chrXV:110808-111232 2.9e-12 27_[+3]_43 chrVII:779403-779860 2.9e-12 40_[-3]_30 chrV:207172-207601 4.4e-12 26_[-3]_44 chrV:434353-434798 4.4e-12 51_[+3]_19 chrXIII:362872-363282 4.4e-12 42_[-3]_28 chrXI:313269-313656 4.4e-12 24_[+3]_46 chrVII:319494-320057 4.4e-12 61_[-3]_9 chrIV:1075313-1075717 1.1e-11 43_[+3]_27 chrVIII:475547-475962 1.1e-11 38_[+3]_32 chrVII:544446-544849 2e-11 15_[+3]_55 chrXII:793726-794158 2e-11 31_[-3]_39 chrX:374232-374332 2e-11 16_[+3]_54 chrIV:568689-569210 2e-11 70_[-3] chrX:541321-541421 2e-11 20_[-3]_50 chrIV:1256906-1257276 3.8e-10 2_[+3]_68 chrXII:818431-818812 4e-10 43_[-3]_27 chrXV:594213-594639 4.2e-10 13_[+3]_57 chrII:6553-6969 5.5e-09 59_[-3]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAMAASSDNRHRTGMTAACCAYTACACTAT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SAMAASSDNRHRTGMTAACCAYTACACTAT width=30 seqs=31 chrIV:520765-521151 ( 70) CAAAACCGAAAGTGATAACCACTACACTAT 1 chrV:130907-131341 ( 44) CAAAACCGAAAGTGATAACCACTACACTAT 1 chrXII:448519-448946 ( 4) CAAAACCGAAAGTGATAACCACTACACTAT 1 chrIV:645023-645405 ( 25) CAAAACCGAAAGTGATAACCACTACACTAT 1 chrV:250023-250539 ( 61) CAAAACCGAAAGTGATAACCACTACACTAT 1 chrVIII:134134-134541 ( 40) CAAAACCGAAAGTGATAACCACTACACTAT 1 chrXIII:808104-808503 ( 29) CAGAACCGAAAGTGATAACCACTACACTAT 1 chrVII:541607-542145 ( 30) GAAAGCGTGATGTGATAGCCGTTACACTAT 1 chrXII:796984-797380 ( 52) GAAAGCGTGATGTGATAGCCGTTACACTAT 1 chrXVI:210005-210450 ( 51) GAAAGCGTGATGTGATAGCCGTTACACTAT 1 chrV:176882-177391 ( 19) GAAAGCGTGATGTGATAGCCGTTACACTAT 1 chrII:645005-645395 ( 23) GAAAGCGTGATGTGATAGCCGTTACACTAT 1 chrXIV:96053-96495 ( 53) GGAAGGGTGGGATGATAACCACTACACTAA 1 chrXV:110808-111232 ( 28) GGAAGGGTGGGATGATAACCACTACACTAA 1 chrVII:779403-779860 ( 41) GGAAGGGTGGGATGATAACCACTACACTAA 1 chrV:207172-207601 ( 27) CACAACGATGTGTACTAACCACTATACTAA 1 chrV:434353-434798 ( 52) CACAACGATGTGTACTAACCACTATACTAA 1 chrXIII:362872-363282 ( 43) CACAACGATGTGTACTAACCACTATACTAA 1 chrXI:313269-313656 ( 25) CACAACGATGTGTACTAACCACTATACTAA 1 chrVII:319494-320057 ( 62) CACAACGATGTGTACTAACCACTATACTAA 1 chrIV:1075313-1075717 ( 44) GTGAAGGCAACGTGATAGCCGCTACACTAT 1 chrVIII:475547-475962 ( 39) GTGAAGGCAACGTGATAGCCGCTACACTAT 1 chrVII:544446-544849 ( 16) GACAAGCGCCCATTCTGACCATTAAACTAT 1 chrXII:793726-794158 ( 32) GACAAGCGCCCATTCTGACCATTAAACTAT 1 chrX:374232-374332 ( 17) GACAAGCGCCCATTCTGACCATTAAACTAT 1 chrIV:568689-569210 ( 71) GACAAGCGCCCATTCTGACCATTAAACTAT 1 chrX:541321-541421 ( 21) GACAAGCGCCCATTCTGACCATTAAACTAT 1 chrIV:1256906-1257276 ( 3) GGGAAGCATGAATTCTAACCACTGAACCAC 1 chrXII:818431-818812 ( 44) CGGAAGAATGCATGCTAACCATTGCACTAG 1 chrXV:594213-594639 ( 14) GGGAAGCATAAATTCTAACCACTGAACCAC 1 chrII:6553-6969 ( 60) CACCGGCATGAGTTTGAGCCACTACCGTAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAMAASSDNRHRTGMTAACCAYTACACTAT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 40612 bayes= 10.3175 E= 7.6e-143 -1160 127 155 -1160 124 -1160 5 -228 53 93 5 -1160 163 -253 -1160 -1160 118 -1160 64 -1160 -1160 155 127 -1160 -328 137 137 -1160 -11 -153 105 -28 -11 -21 47 -11 63 -21 93 -1160 4 47 -95 4 18 -1160 179 -1160 -1160 -1160 -1160 167 -96 -1160 164 -28 81 117 -1160 -328 -1160 -1160 -253 163 142 -1160 -21 -1160 124 -1160 47 -1160 -1160 242 -1160 -1160 -1160 242 -1160 -1160 130 -1160 28 -1160 -1160 179 -1160 18 -1160 -1160 -1160 167 153 -1160 -95 -1160 -47 172 -1160 -96 163 -253 -1160 -1160 -1160 237 -253 -1160 -1160 -153 -1160 158 167 -1160 -1160 -1160 -28 -153 -253 104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAMAASSDNRHRTGMTAACCAYTACACTAT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 31 E= 7.6e-143 0.000000 0.451613 0.548387 0.000000 0.741935 0.000000 0.193548 0.064516 0.451613 0.354839 0.193548 0.000000 0.967742 0.032258 0.000000 0.000000 0.709677 0.000000 0.290323 0.000000 0.000000 0.548387 0.451613 0.000000 0.032258 0.483871 0.483871 0.000000 0.290323 0.064516 0.387097 0.258065 0.290323 0.161290 0.258065 0.290323 0.483871 0.161290 0.354839 0.000000 0.322581 0.258065 0.096774 0.322581 0.354839 0.000000 0.645161 0.000000 0.000000 0.000000 0.000000 1.000000 0.161290 0.000000 0.580645 0.258065 0.548387 0.419355 0.000000 0.032258 0.000000 0.000000 0.032258 0.967742 0.838710 0.000000 0.161290 0.000000 0.741935 0.000000 0.258065 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.774194 0.000000 0.225806 0.000000 0.000000 0.645161 0.000000 0.354839 0.000000 0.000000 0.000000 1.000000 0.903226 0.000000 0.096774 0.000000 0.225806 0.612903 0.000000 0.161290 0.967742 0.032258 0.000000 0.000000 0.000000 0.967742 0.032258 0.000000 0.000000 0.064516 0.000000 0.935484 1.000000 0.000000 0.000000 0.000000 0.258065 0.064516 0.032258 0.645161 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAMAASSDNRHRTGMTAACCAYTACACTAT MEME-3 regular expression -------------------------------------------------------------------------------- [GC]A[AC]A[AG][CG][CG][GAT][ATG][AG][ATC][GA]T[GT][AC]TA[AG]CC[AG][CT]TA[CA]ACTA[TA] -------------------------------------------------------------------------------- Time 1160.56 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:922134-922519 5.38e-01 100 chrV:141084-141453 6.41e-01 100 chrVIII:75806-75914 6.29e-01 100 chrXV:438452-438949 1.09e-05 58_[-1(1.09e-09)]_21 chrXIV:529535-529788 1.26e-01 100 chrII:408511-409011 1.52e-01 17_[-1(7.98e-05)]_62 chrXVI:572057-572508 9.99e-12 42_[-2(1.57e-07)]_15_[-1(8.71e-11)]_\ 2 chrVII:479251-483001 3.05e-01 100 chrI:143122-143560 9.51e-01 100 chrXV:663612-664102 5.99e-10 13_[+1(4.78e-09)]_18_[+2(2.82e-08)]_\ 28 chrVIII:134134-134541 2.40e-17 39_[-3(1.51e-15)]_6_[-1(3.86e-09)]_\ 4 chrVII:26-187 2.85e-01 100 chrXIII:379191-379578 1.98e-04 48_[+2(1.83e-06)]_32 chrXVI:214832-215245 9.61e-01 100 chrIII:194246-194662 8.18e-01 100 chrXI:27-246 1.18e-03 62_[+2(2.99e-06)]_18 chrXV:24627-24864 6.13e-01 100 chrIV:1201518-1202005 5.15e-05 44_[-2(5.62e-08)]_36 chrII:237032-237186 1.63e-01 100 chrXIII:183745-184144 3.57e-12 12_[+1(8.71e-11)]_15_[+2(1.57e-07)]_\ 32 chrVII:561431-561934 7.96e-02 100 chrVII:706928-707419 8.93e-04 30_[+2(8.55e-07)]_50 chrVII:439425-439860 2.49e-01 100 chrX:121855-121955 8.30e-02 100 chrVII:779403-779860 2.61e-15 40_[-3(2.89e-12)]_6_[-1(2.91e-10)]_\ 3 chrV:304481-304897 4.72e-01 100 chrXII:794201-795196 4.14e-01 100 chrXIV:241409-241723 6.04e-02 18_[-1(3.61e-05)]_61 chrX:139177-139277 6.15e-01 100 chrV:67063-67311 8.20e-01 100 chrXVI:819319-819789 4.79e-14 30_[-2(2.68e-10)]_18_[-1(5.33e-11)]_\ 11 chrVIII:386629-386824 2.73e-01 100 chrV:250023-250539 1.07e-11 60_[-3(1.51e-15)]_10 chrXIV:546868-547361 2.42e-04 35_[-2(4.96e-07)]_45 chrXIII:163663-163836 8.39e-01 100 chrV:396221-396560 6.60e-01 100 chrIV:117963-118183 6.93e-01 100 chrXII:374135-374671 3.56e-09 7_[-2(1.02e-08)]_17_[-1(3.76e-07)]_\ 35 chrXII:263063-263347 2.18e-01 100 chrIII:168129-168713 9.90e-01 100 chrVII:345904-346548 2.44e-01 100 chrIV:1305450-1305856 1.02e-07 32_[-2(1.15e-10)]_48 chrIX:138143-138950 9.20e-01 100 chrIV:1013735-1013938 4.98e-01 100 chrXV:725316-725587 3.90e-01 100 chrVII:366093-366702 8.88e-01 100 chrVIII:34508-35226 7.52e-01 100 chrIV:667796-668330 4.79e-14 2_[+1(5.33e-11)]_18_[+2(2.68e-10)]_\ 39 chrXI:309546-309962 9.29e-01 100 chrII:236888-237011 9.95e-01 100 chrVII:412154-412561 1.24e-04 34_[+2(2.82e-08)]_46 chrIV:839616-840032 9.31e-01 100 chrVII:278123-278328 5.42e-01 100 chrVII:700494-701252 7.98e-01 100 chrXII:201802-202099 8.46e-01 100 chrXVI:821850-822250 6.00e-01 100 chrXIII:754425-754798 7.87e-01 100 chrXV:901545-901961 9.86e-01 100 chrXI:162288-162739 4.81e-09 32_[+1(1.09e-09)]_16_[+2(2.08e-06)]_\ 11 chrVIII:451430-452040 1.43e-02 40_[-2(4.45e-05)]_40 chrXV:977962-978408 9.54e-02 100 chrXIV:174281-174624 9.16e-01 100 chrX:73398-73498 9.39e-01 100 chrXVI:775646-776017 8.93e-04 29_[+2(8.55e-07)]_51 chrVII:483290-483759 8.96e-04 10_[-1(4.24e-07)]_69 chrIII:127547-127894 6.04e-05 51_[-2(8.90e-09)]_29 chrXVI:173533-173854 3.34e-01 100 chrXII:712265-712681 6.34e-01 100 chrVIII:382931-383416 1.00e-01 100 chrXII:637146-637716 5.67e-01 100 chrI:81945-82266 5.59e-01 100 chrXIII:552900-553208 2.96e-02 100 chrIV:946066-946630 1.31e-05 72_[-1(1.88e-08)]_7 chrXII:949657-949775 8.35e-01 100 chrX:75357-75457 6.32e-01 100 chrX:538367-538467 2.83e-03 53_[-2(9.90e-07)]_27 chrV:378089-378310 8.27e-01 100 chrV:138477-139022 4.99e-06 8_[-1(1.09e-09)]_71 chrV:424749-425165 5.16e-01 100 chrXII:962860-963279 5.05e-06 10_[+2(2.75e-09)]_70 chrXIV:24026-24442 3.41e-01 100 chrII:645005-645395 2.93e-15 22_[-3(6.84e-13)]_6_[-1(2.91e-10)]_\ 21 chrIV:579542-580124 2.41e-01 100 chrX:354052-354152 1.42e-05 76_[-1(1.88e-08)]_3 chrI:71977-73350 7.83e-01 100 chrXV:905958-906374 1.00e+00 100 chrX:126432-126532 9.53e-01 100 chrIX:322580-322996 5.18e-01 100 chrX:541321-541421 1.04e-12 20_[-3(2.02e-11)]_6_[-1(9.02e-08)]_\ 23 chrXIII:747738-748159 7.19e-09 2_[+1(1.09e-09)]_16_[+2(2.08e-06)]_\ 41 chrXIII:761836-762260 7.90e-01 100 chrXIII:301521-301937 1.85e-01 100 chrVIII:114943-115648 5.72e-01 100 chrXV:623279-623454 7.97e-01 100 chrXI:108715-109074 8.86e-01 100 chrXIII:660992-661408 7.48e-01 100 chrIV:1360802-1361218 9.98e-01 100 chrXVI:66994-67301 2.28e-03 44_[-3(9.04e-05)]_26 chrXII:1028222-1028569 3.92e-01 100 chrXVI:785745-785952 1.42e-01 100 chrVII:365492-365693 9.90e-01 100 chrXII:1064330-1064543 9.36e-01 100 chrVII:535543-535798 7.60e-01 100 chrXIII:145901-146273 9.40e-02 100 chrVII:185530-185945 1.25e-11 35_[+1(1.88e-10)]_17_[+2(5.62e-08)]_\ 7 chrXII:589144-589560 3.64e-01 100 chrIV:45684-46100 5.35e-01 100 chrXI:284203-284565 9.49e-01 100 chrV:86426-86818 1.17e-06 37_[-2(1.15e-10)]_43 chrIV:1095140-1095641 1.39e-04 38_[+1(5.67e-08)]_41 chrVII:438586-438891 4.60e-01 100 chrIV:568689-569210 1.60e-14 24_[-1(1.09e-09)]_25_[-3(2.02e-11)] chrXIV:26596-27012 6.50e-03 70_[+3(4.07e-05)] chrVII:148659-148805 7.94e-01 100 chrV:101401-101610 6.52e-01 100 chrV:176882-177391 2.93e-15 18_[-3(6.84e-13)]_6_[-1(2.91e-10)]_\ 25 chrXV:678094-678245 8.67e-01 100 chrVI:137290-137755 3.41e-09 22_[+1(4.83e-08)]_18_[+2(8.90e-09)]_\ 19 chrIII:11238-11432 9.34e-01 100 chrIV:884177-884596 6.24e-07 30_[-2(8.62e-08)]_50 chrI:180955-181477 5.43e-01 100 chrX:390904-391004 1.60e-09 7_[+1(2.25e-08)]_17_[+2(2.74e-07)]_\ 35 chrXIII:388271-388667 2.27e-02 100 chrXII:690032-690448 1.00e+00 100 chrIX:131688-132104 9.42e-01 100 chrXVI:787244-787660 9.81e-01 100 chrV:77570-77861 4.41e-01 100 chrIX:183279-183697 4.79e-14 10_[+1(5.33e-11)]_18_[+2(2.68e-10)]_\ 31 chrVIII:381612-382046 1.47e-01 100 chrVII:255243-255397 7.52e-01 100 chrIV:130021-130427 4.10e-01 100 chrV:6171-6558 8.76e-01 100 chrIV:470269-470685 8.37e-01 100 chrVI:5252-5484 5.29e-01 100 chrXI:258541-259007 4.16e-01 100 chrXV:288002-288527 5.53e-05 36_[-1(1.88e-08)]_43 chrXIII:181173-181418 9.93e-01 100 chrVII:882489-884011 7.91e-02 100 chrXV:34-272 2.10e-01 100 chrXV:742272-742500 8.23e-01 100 chrII:197297-197941 5.48e-08 68_[+1(8.71e-11)]_11 chrXVI:856711-857135 5.38e-13 34_[-2(4.35e-09)]_17_[-1(1.88e-10)]_\ 8 chrXV:976215-976705 1.60e-09 16_[-2(2.74e-07)]_17_[-1(2.25e-08)]_\ 26 chrVIII:296895-297216 5.76e-01 100 chrIX:99652-100006 2.69e-02 57_[-3(3.98e-05)]_13 chrXII:975862-976232 3.03e-05 33_[+2(8.90e-09)]_47 chrVII:604849-605265 5.04e-01 100 chrXIII:736510-736885 3.27e-02 100 chrIII:137753-138169 9.44e-01 100 chrVI:82964-83876 2.31e-01 100 chrXV:110808-111232 2.61e-15 [+1(2.91e-10)]_6_[+3(2.89e-12)]_43 chrXVI:810421-810902 2.82e-06 70_[-2(8.90e-09)]_10 chrXVI:338730-339099 5.90e-04 29_[+2(2.29e-07)]_51 chrXVI:794491-794789 8.91e-01 100 chrV:423111-423453 3.76e-01 100 chrII:605746-606110 1.20e-02 38_[+2(2.38e-05)]_42 chrXI:490771-491186 1.28e-05 45_[-2(1.02e-08)]_35 chrXI:309345-309761 5.00e-01 100 chrXVI:435743-436153 1.42e-07 3_[+1(2.92e-07)]_16_[+2(8.55e-07)]_\ 40 chrVII:319494-320057 1.04e-07 61_[-3(4.41e-12)]_9 chrVI:83804-84369 7.89e-01 100 chrIV:1354608-1354857 9.93e-01 100 chrXV:867819-868140 9.52e-01 100 chrXV:710014-710382 6.99e-04 58_[-2(2.29e-07)]_22 chrVI:223928-224202 9.52e-01 100 chrXVI:875228-875644 5.61e-01 100 chrIV:490927-491266 3.30e-01 100 chrIV:221435-221623 6.94e-01 100 chrXVI:770833-771099 5.20e-01 100 chrIV:580231-580523 5.30e-02 79_[-1(4.88e-05)] chrIX:205063-205384 1.26e-01 100 chrV:139745-140059 7.98e-01 100 chrXII:198970-199699 7.32e-01 100 chrXV:216265-216651 3.25e-01 100 chrXIII:837718-838172 5.53e-02 100 chrIV:117165-117569 3.11e-01 100 chrII:557488-557904 9.20e-01 100 chrI:138970-139368 2.42e-04 38_[-2(4.96e-07)]_42 chrVIII:475547-475962 5.30e-15 10_[+1(1.19e-10)]_7_[+3(1.13e-11)]_\ 32 chrX:519485-519585 1.94e-01 100 chrXV:798189-798605 6.32e-01 100 chrXV:1004052-1004376 8.69e-01 100 chrXII:370448-370999 9.32e-01 100 chrX:227765-227865 7.21e-01 100 chrVIII:146018-146528 5.38e-13 27_[+1(1.88e-10)]_17_[+2(4.35e-09)]_\ 15 chrXII:628195-628650 7.51e-04 16_[-2(9.56e-08)]_64 chrXI:518798-519234 5.87e-01 100 chrXII:650950-651378 9.90e-01 100 chrIII:27637-28112 2.34e-01 100 chrIX:254256-254541 5.07e-01 100 chrV:52643-53059 7.51e-01 100 chrXVI:856053-856364 9.91e-01 100 chrXIV:6493-6881 1.54e-01 100 chrXV:253830-254105 6.02e-01 100 chrXIII:163359-163672 9.46e-01 100 chrXIII:752997-753264 5.72e-01 100 chrIV:130587-130956 7.96e-01 100 chrXII:673752-674222 1.46e-01 66_[-3(6.33e-05)]_4 chrIV:1489132-1489642 8.91e-01 100 chrIV:1256906-1257276 6.50e-08 2_[+3(3.82e-10)]_68 chrII:88107-88561 9.73e-01 100 chrIX:316144-316575 6.72e-01 100 chrV:305709-306187 8.54e-01 100 chrXII:1018995-1019364 2.99e-01 100 chrIV:579542-580120 2.41e-01 100 chrXV:167993-168432 5.17e-01 100 chrIV:651311-651603 9.97e-01 100 chrII:413997-414207 8.55e-01 100 chrXIII:808104-808503 3.31e-16 1_[+1(2.06e-08)]_6_[+3(4.40e-15)]_\ 42 chrXV:620853-621072 3.25e-02 8_[-3(2.06e-05)]_62 chrIII:163475-163922 1.17e-03 74_[-1(1.42e-05)]_5 chrXV:442353-442769 6.70e-01 100 chrVIII:386373-386548 1.94e-03 54_[-3(3.18e-05)]_16 chrII:89670-89919 3.68e-01 100 chrII:226840-227364 3.36e-07 28_[-2(1.15e-10)]_52 chrII:414080-414496 8.61e-01 100 chrII:167914-168197 3.48e-01 100 chrII:407640-408056 4.51e-01 100 chrIV:1080297-1080842 3.10e-03 46_[-3(3.04e-05)]_24 chrIV:1238014-1238366 3.68e-01 100 chrX:374232-374332 1.60e-14 16_[+3(2.02e-11)]_25_[+1(1.09e-09)]_\ 8 chrXVI:880130-880681 9.06e-01 100 chrVII:857260-857670 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chrXII:499132-499644 7.97e-01 100 chrXIII:267834-268274 9.03e-01 100 chrV:354704-355310 6.88e-06 18_[-1(2.91e-10)]_61 chrXV:619159-619554 2.30e-01 100 chrXIII:425108-425524 1.61e-01 100 chrIV:992544-993027 9.31e-01 100 chrXV:905754-906170 7.59e-01 100 chrVIII:358322-358766 7.32e-04 49_[+2(2.74e-07)]_31 chrV:441813-442639 3.15e-01 100 chrXII:11134-11521 4.40e-01 100 chrIV:1401836-1402252 2.92e-01 100 chrI:527-738 5.65e-01 100 chrV:140485-140873 9.47e-01 100 chrXIII:420408-420857 5.99e-10 14_[+1(4.78e-09)]_18_[+2(2.82e-08)]_\ 27 chrXI:74419-74858 8.34e-10 41_[-2(8.90e-09)]_18_[-1(4.83e-08)] chrVIII:104446-104862 4.57e-01 100 chrV:130907-131341 2.40e-17 16_[+1(3.86e-09)]_6_[+3(1.51e-15)]_\ 27 chrXIII:224075-224366 5.04e-01 100 chrXIV:23821-24237 9.03e-01 100 chrIV:411285-411619 6.99e-02 56_[+2(3.58e-05)]_24 chrIX:318044-318224 3.27e-01 100 chrXIV:282041-282457 9.31e-01 100 chrXIII:887766-888035 4.90e-01 100 chrV:303081-303397 9.23e-01 100 chrXIV:107085-107419 2.81e-01 100 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chrIV:1239830-1239953 5.42e-01 100 chrVIII:556158-556379 5.50e-01 100 chrV:304262-304678 5.08e-01 100 chrXVI:303999-304270 7.08e-01 100 chrX:156753-156853 3.26e-01 100 chrIX:174848-175309 2.00e-10 8_[-2(3.76e-09)]_17_[-1(1.07e-08)]_\ 34 chrIV:356727-356862 2.34e-02 100 chrVII:310899-311928 8.00e-01 100 chrIX:257375-257701 5.62e-01 100 chrXIII:923567-923829 3.33e-01 100 chrVIII:121099-121515 2.30e-01 100 chrVII:1050259-1050490 6.57e-01 100 chrIX:324079-324717 2.92e-01 100 chrXIV:279659-280075 8.26e-01 100 chrIV:980829-981273 3.11e-06 28_[+2(1.15e-10)]_52 chrXII:262792-263103 9.99e-01 100 chrXIV:576988-577187 1.01e-01 100 chrIV:217153-217498 3.84e-01 100 chrXI:109395-109811 5.49e-01 100 chrX:348920-349020 9.84e-01 100 chrXI:431345-431644 9.30e-01 100 chrIV:489914-490330 4.26e-01 100 chrXIV:783853-784181 5.68e-01 100 chrXIII:549984-550217 6.03e-01 100 chrXV:678820-679169 4.41e-01 100 chrIV:234161-234684 7.47e-01 100 chrXIII:301722-302138 1.90e-01 100 chrXII:818811-819171 1.05e-01 100 chrIV:1524691-1524899 6.34e-01 100 chrX:90083-90183 9.31e-01 100 chrVIII:132878-133371 1.30e-06 7_[+2(1.15e-10)]_73 chrXV:83179-83455 2.40e-01 100 chrIV:357388-357690 6.83e-04 61_[+3(4.16e-05)]_9 chrVIII:148955-149269 1.51e-01 100 chrXVI:377956-378372 3.81e-01 100 chrXI:517295-517473 1.20e-01 100 chrXIII:924115-924431 3.65e-01 100 chrXV:896512-896928 9.45e-01 100 chrII:332324-332722 8.75e-01 100 chrIV:1461578-1462039 5.23e-04 45_[+2(9.56e-08)]_35 chrIV:488525-489073 3.74e-06 56_[+1(1.09e-09)]_23 chrII:266192-266650 2.00e-10 12_[-2(3.76e-09)]_17_[-1(1.07e-08)]_\ 30 chrXII:693675-694091 6.84e-01 100 chrXVI:744099-744521 1.02e-06 29_[-2(1.50e-06)]_16_[-1(2.57e-07)]_\ 14 chrXI:326196-327355 9.52e-02 100 chrXIV:575286-575677 2.73e-01 100 chrXII:799454-799870 6.96e-02 100 chrVII:310493-310888 9.50e-01 100 chrXII:949741-950157 3.35e-01 100 chrIII:28846-29032 3.79e-01 100 chrXV:980495-981035 3.48e-06 42_[-1(2.48e-09)]_37 chrXVI:560017-560493 4.18e-08 1_[+1(5.67e-08)]_36_[+2(2.74e-07)]_\ 22 chrX:414806-414906 1.25e-11 [-2(5.62e-08)]_17_[-1(1.88e-10)]_42 chrVIII:121358-121774 4.00e-01 100 chrXI:84005-84432 3.57e-06 45_[-2(2.75e-09)]_35 chrXIV:26423-26596 5.35e-01 100 chrIV:308032-308366 7.26e-01 100 chrIV:1362332-1362590 7.16e-01 100 chrXIII:626450-626904 9.56e-01 100 chrXV:228136-228543 2.84e-05 47_[-2(8.90e-09)]_33 chrVII:774157-774602 5.38e-13 25_[-2(4.35e-09)]_17_[-1(1.88e-10)]_\ 17 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************