******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SOK2/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:190031-190622 1.0000 100 chrIV:543585-543953 1.0000 100 chrXIV:502058-502494 1.0000 100 chrXVI:689368-689822 1.0000 100 chrXI:326117-327372 1.0000 100 chrIV:599647-600357 1.0000 100 chrV:138454-139040 1.0000 100 chrIII:177114-177595 1.0000 100 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100 chrXVI:516395-516549 1.0000 100 chrXII:949464-949923 1.0000 100 chrXIV:662323-662514 1.0000 100 chrXII:737738-738092 1.0000 100 chrVI:223924-224199 1.0000 100 chrI:14746-15071 1.0000 100 chrVIII:505831-506184 1.0000 100 chrVII:544417-544847 1.0000 100 chrV:303084-303431 1.0000 100 chrV:311825-312301 1.0000 100 chrXV:866577-866917 1.0000 100 chrXV:900036-900361 1.0000 100 chrV:152472-153328 1.0000 100 chrV:77458-78167 1.0000 100 chrVIII:562252-562633 1.0000 100 chrII:140417-140831 1.0000 100 chrXI:146850-147301 1.0000 100 chrIII:292799-293235 1.0000 100 chrIII:228512-229222 1.0000 100 chrVII:958553-958989 1.0000 100 chrV:139374-139810 1.0000 100 chrX:22729-22829 1.0000 100 chrXIII:408181-408872 1.0000 100 chrVIII:553433-553604 1.0000 100 chrVII:986755-987804 1.0000 100 chrIV:1468192-1468466 1.0000 100 chrIV:339002-339438 1.0000 100 chrII:798741-799186 1.0000 100 chrXI:431318-431656 1.0000 100 chrIII:137729-138165 1.0000 100 chrXI:517227-517522 1.0000 100 chrIII:124504-124631 1.0000 100 chrXIII:5307-5807 1.0000 100 chrXI:617679-618041 1.0000 100 chrIX:325555-325988 1.0000 100 chrXIV:499323-499645 1.0000 100 chrXV:232105-232359 1.0000 100 chrXI:284345-284824 1.0000 100 chrXIII:430974-431410 1.0000 100 chrIV:722175-722845 1.0000 100 chrXVI:810454-810902 1.0000 100 chrVII:930810-931225 1.0000 100 chrXIV:783850-784187 1.0000 100 chrXII:791662-792098 1.0000 100 chrXIV:631717-632108 1.0000 100 chrXV:989062-989604 1.0000 100 chrXI:618836-619198 1.0000 100 chrVII:254128-254538 1.0000 100 chrXIII:630052-630488 1.0000 100 chrIV:1201516-1202002 1.0000 100 chrVII:783857-784157 1.0000 100 chrXV:505085-505485 1.0000 100 chrXI:27-242 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SOK2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SOK2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SOK2/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 569 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 56900 N= 569 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.305 C 0.195 G 0.195 T 0.305 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SOK2/background): A 0.311 C 0.189 G 0.189 T 0.311 ******************************************************************************** ******************************************************************************** MOTIF MBSGGRATCGAACCSVKGAYCYYCHSRTT MEME-1 width = 29 sites = 50 llr = 1020 E-value = 3.4e-189 ******************************************************************************** -------------------------------------------------------------------------------- Motif MBSGGRATCGAACCSVKGAYCYYCHSRTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 4:12:65:::aa::13137:::122:411 pos.-specific C 544:::1:7:::a8531::5735544211 probability G 1358a42::a::::43571:111:16412 matrix T :31:::1a3::::11:4:3526323::76 bits 2.4 * * 2.2 * * * 1.9 * * * 1.7 * * **** Relative 1.4 * ******* * * Entropy 1.2 ** ******* * * (29.4 bits) 1.0 *** ******* * ** * 0.7 ****** ******** * ** * 0.5 ****** ***************** **** 0.2 ************************ **** 0.0 ----------------------------- Multilevel CCGGGAATCGAACCCGGGACCTCCCGATT consensus AGCA GG T GATATTTCTTTCG G sequence T C A C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRATCGAACCSVKGAYCYYCHSRTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrV:551143-551532 + 6 2.10e-13 TCTCT AGCGGGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrXVI:819307-819786 - 70 2.10e-13 CT AGCGGGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrIX:210484-210918 - 51 2.10e-13 TATGGTCTCT AGCGGGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrIII:123417-123825 + 14 2.10e-13 GTGGGGCGAG CCGGGACTCGAACCCGGGACCTCCCGCAC CCTAAGCGAG chrIX:183288-183700 + 4 2.10e-13 TCT AGCGGGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrXVI:209911-210464 + 63 9.40e-13 AACTCCGATA CGGGGAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGA chrXI:140761-141301 + 45 9.40e-13 AACTCCGATA CGGGGAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrV:354698-355336 - 2 9.40e-13 TACTCCGATA CGGGGAGTCGAACCCCGGTCTCCACGGTG A chrIV:1016955-1017477 + 49 9.40e-13 AACTCCGAAG CGGGGAGTCGAACCCCGGTCTCCACGGTG AGAACGTGAT chrV:311825-312301 + 18 1.74e-12 ATTGGACGCA ACCGGAATCGAACCGATGACCTCTTCCTT GCAAGGGAAG chrXV:854028-854443 + 10 1.74e-12 TTGGACGCA ACCGGAATCGAACCGATGACCTCTTCCTT GCAAGGGAAG chrXI:162275-162746 + 35 1.06e-11 AACACTCACG ATGGGGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrII:405681-406164 - 41 1.06e-11 AGCACTCACG ATGGGGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrVII:405290-405725 - 48 1.06e-11 AGCACTCACG ATGGGGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrX:374262-374362 + 53 1.06e-11 AGCACTCACG ATGGGGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrV:138454-139040 - 4 1.06e-11 AACACTCACG ATGGGGGTCGAACCCATAATCTTCTGATT AGA chrV:135204-135686 + 38 1.37e-11 AAAGCCCTGT AGGGGGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrX:531635-531735 - 28 1.37e-11 ACTGCGCAAG CCCGGAATCGAACCGGGGGCCCAACGATG GCAACGTTGG chrXVI:581884-582360 - 26 1.37e-11 AAAGCCCTGT AGGGGGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrV:250101-250549 - 46 2.26e-11 AAAGGTCCTA CCCGGATTCGAACCGGGGTTGTCCGGATC AAAACCGAAA chrXII:448390-448926 + 50 2.26e-11 GAAGGTCCTA CCCGGATTCGAACCGGGGTTGTCCGGATC AAAACCGAAA chrIX:325555-325988 - 63 5.18e-11 TTGCTTCCA ATCGGATTTGAACCGATGATCTCCACATT ACTAGTGTGG chrXV:353860-354296 + 21 5.18e-11 AATGCTTCCA ATCGGATTTGAACCGATGATCTCCACATT ACTAGTGTGG chrXIV:104618-105161 - 2 5.18e-11 TATGCTTCCA ATCGGATTTGAACCGATGATCTCCACATT A chrXIV:560487-560974 + 21 5.18e-11 TATGCTTCCA ATCGGATTTGAACCGATGATCTCCACATT ACTAGTGTGG chrXIV:567912-568427 - 62 6.50e-11 AAGGGGCGAG CTGGGAATTGAACCCAGGGCCTCTCGCAT GCTTTGTCTT chrXV:980486-981033 - 42 6.50e-11 AAGGGGCGAG CTGGGAATTGAACCCAGGGCCTCTCGCAT GCTTTGTTCC chrXV:110784-111229 + 14 4.22e-10 TATGAGCGGT ACGAGAATCGAACCCGTGTCCCCACCTTG GAAGGGTGGG chrVII:774153-774596 - 61 4.64e-10 TTTGGACGAG TCCGGAATCGAACCGGAGACCTCTCCCAT GCTAAGGGAG chrIV:1075314-1075719 + 14 4.64e-10 AATGTTCCAA CCGAGGATCGAACTCGGGACCTTTGCCGT GTGAAGGCAA chrXVI:856719-857131 - 63 4.64e-10 ATGGACGAG TCCGGAATCGAACCGGAGACCTCTCCCAT GCTAAGGGAG chrXV:438427-438956 - 61 5.10e-10 AACTCCTCAT AGGGGGCTCGAACCCCTGACATTTCGGTA TCCTTGCTTA chrXII:374169-374709 - 2 7.40e-10 ATCTTCCCCG CCAGGACTTGAACCTGGAATCTTCTGGTT C chrV:492176-492600 + 22 7.40e-10 TCCTTCCCCG CCAGGACTTGAACCTGGAATCTTCTGGTT CGTAGCCAGA chrXII:687635-688142 + 29 8.10e-10 AATGATTTCG CCCAGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrXI:379499-379917 - 59 8.10e-10 ATTGATTTCG CCCAGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrVII:544417-544847 + 3 1.50e-09 GA CGGGGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrX:541315-541415 - 66 1.50e-09 CCGCGA CGGGGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrXIII:463366-463889 - 12 1.50e-09 ATCTCCGCGA CGGGGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrIX:336198-336613 + 2 1.50e-09 A CGGGGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrIV:1095143-1095650 + 32 3.41e-09 AATGCGAACT CTGTGGATCGAACACAGGACCTCCAGATA TCTTGACCAA chrXVI:55895-56521 + 19 4.32e-09 ATTGAAACGG ACAGGAATTGAACCTGCAACCCTTCGATT GCAATCTTAT chrXVI:775622-776018 + 3 1.29e-08 CA CTCAGGATCGAACTAAGGACCAACAGATT TGCAATCTGC chrIV:1175643-1176150 - 19 1.47e-08 AATGCTCCAG GGGAGGTTCGAACTCTCGACCTTCAGATT ATGAGACTGA chrX:354065-354165 - 52 1.80e-08 AATCTCCCGG GGGCGAGTCGAACGCCCGATCTCAAGATT TCGTAGTGGT chrXIII:362877-363347 - 37 2.49e-08 AATGCCATCT CCTAGAATCGAACCAGGGTTTCATCGGCC ACAACGATGT chrV:207155-207610 - 60 2.49e-08 TATGCCATCT CCTAGAATCGAACCAGGGTTTCATCGGCC ACAACGATGT chrV:434360-434795 + 22 2.49e-08 AATGCCATCT CCTAGAATCGAACCAGGGTTTCATCGGCC ACAACGATGT chrVI:137283-137752 + 27 2.49e-08 AACGACCCCA GTGAGGGTTGAACTCACGATCTTGCGATT AACAGTCGCA chrVII:483211-483799 - 23 1.31e-07 TGAAAACAAA CCCGGTCTCGAAGCGGAGATCCGGCGATA ATTACCGCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRATCGAACCSVKGAYCYYCHSRTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:551143-551532 2.1e-13 5_[+1]_66 chrXVI:819307-819786 2.1e-13 69_[-1]_2 chrIX:210484-210918 2.1e-13 50_[-1]_21 chrIII:123417-123825 2.1e-13 13_[+1]_58 chrIX:183288-183700 2.1e-13 3_[+1]_68 chrXVI:209911-210464 9.4e-13 62_[+1]_9 chrXI:140761-141301 9.4e-13 44_[+1]_27 chrV:354698-355336 9.4e-13 1_[-1]_70 chrIV:1016955-1017477 9.4e-13 48_[+1]_23 chrV:311825-312301 1.7e-12 17_[+1]_54 chrXV:854028-854443 1.7e-12 9_[+1]_62 chrXI:162275-162746 1.1e-11 34_[+1]_37 chrII:405681-406164 1.1e-11 40_[-1]_31 chrVII:405290-405725 1.1e-11 47_[-1]_24 chrX:374262-374362 1.1e-11 52_[+1]_19 chrV:138454-139040 1.1e-11 3_[-1]_68 chrV:135204-135686 1.4e-11 37_[+1]_34 chrX:531635-531735 1.4e-11 27_[-1]_44 chrXVI:581884-582360 1.4e-11 25_[-1]_46 chrV:250101-250549 2.3e-11 45_[-1]_26 chrXII:448390-448926 2.3e-11 49_[+1]_22 chrIX:325555-325988 5.2e-11 62_[-1]_9 chrXV:353860-354296 5.2e-11 20_[+1]_51 chrXIV:104618-105161 5.2e-11 1_[-1]_70 chrXIV:560487-560974 5.2e-11 20_[+1]_51 chrXIV:567912-568427 6.5e-11 61_[-1]_10 chrXV:980486-981033 6.5e-11 41_[-1]_30 chrXV:110784-111229 4.2e-10 13_[+1]_58 chrVII:774153-774596 4.6e-10 60_[-1]_11 chrIV:1075314-1075719 4.6e-10 13_[+1]_58 chrXVI:856719-857131 4.6e-10 62_[-1]_9 chrXV:438427-438956 5.1e-10 60_[-1]_11 chrXII:374169-374709 7.4e-10 1_[-1]_70 chrV:492176-492600 7.4e-10 21_[+1]_50 chrXII:687635-688142 8.1e-10 28_[+1]_43 chrXI:379499-379917 8.1e-10 58_[-1]_13 chrVII:544417-544847 1.5e-09 2_[+1]_69 chrX:541315-541415 1.5e-09 65_[-1]_6 chrXIII:463366-463889 1.5e-09 11_[-1]_60 chrIX:336198-336613 1.5e-09 1_[+1]_70 chrIV:1095143-1095650 3.4e-09 31_[+1]_40 chrXVI:55895-56521 4.3e-09 18_[+1]_53 chrXVI:775622-776018 1.3e-08 2_[+1]_69 chrIV:1175643-1176150 1.5e-08 18_[-1]_53 chrX:354065-354165 1.8e-08 51_[-1]_20 chrXIII:362877-363347 2.5e-08 36_[-1]_35 chrV:207155-207610 2.5e-08 59_[-1]_12 chrV:434360-434795 2.5e-08 21_[+1]_50 chrVI:137283-137752 2.5e-08 26_[+1]_45 chrVII:483211-483799 1.3e-07 22_[-1]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRATCGAACCSVKGAYCYYCHSRTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MBSGGRATCGAACCSVKGAYCYYCHSRTT width=29 seqs=50 chrV:551143-551532 ( 6) AGCGGGATCGAACCGCTGATCCCCGCGTT 1 chrXVI:819307-819786 ( 70) AGCGGGATCGAACCGCTGATCCCCGCGTT 1 chrIX:210484-210918 ( 51) AGCGGGATCGAACCGCTGATCCCCGCGTT 1 chrIII:123417-123825 ( 14) CCGGGACTCGAACCCGGGACCTCCCGCAC 1 chrIX:183288-183700 ( 4) AGCGGGATCGAACCGCTGATCCCCGCGTT 1 chrXVI:209911-210464 ( 63) CGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrXI:140761-141301 ( 45) CGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrV:354698-355336 ( 2) CGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrIV:1016955-1017477 ( 49) CGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrV:311825-312301 ( 18) ACCGGAATCGAACCGATGACCTCTTCCTT 1 chrXV:854028-854443 ( 10) ACCGGAATCGAACCGATGACCTCTTCCTT 1 chrXI:162275-162746 ( 35) ATGGGGGTCGAACCCATAATCTTCTGATT 1 chrII:405681-406164 ( 41) ATGGGGGTCGAACCCATAATCTTCTGATT 1 chrVII:405290-405725 ( 48) ATGGGGGTCGAACCCATAATCTTCTGATT 1 chrX:374262-374362 ( 53) ATGGGGGTCGAACCCATAATCTTCTGATT 1 chrV:138454-139040 ( 4) ATGGGGGTCGAACCCATAATCTTCTGATT 1 chrV:135204-135686 ( 38) AGGGGGCTCGAACCCCTAACCTTATGATT 1 chrX:531635-531735 ( 28) CCCGGAATCGAACCGGGGGCCCAACGATG 1 chrXVI:581884-582360 ( 26) AGGGGGCTCGAACCCCTAACCTTATGATT 1 chrV:250101-250549 ( 46) CCCGGATTCGAACCGGGGTTGTCCGGATC 1 chrXII:448390-448926 ( 50) CCCGGATTCGAACCGGGGTTGTCCGGATC 1 chrIX:325555-325988 ( 63) ATCGGATTTGAACCGATGATCTCCACATT 1 chrXV:353860-354296 ( 21) ATCGGATTTGAACCGATGATCTCCACATT 1 chrXIV:104618-105161 ( 2) ATCGGATTTGAACCGATGATCTCCACATT 1 chrXIV:560487-560974 ( 21) ATCGGATTTGAACCGATGATCTCCACATT 1 chrXIV:567912-568427 ( 62) CTGGGAATTGAACCCAGGGCCTCTCGCAT 1 chrXV:980486-981033 ( 42) CTGGGAATTGAACCCAGGGCCTCTCGCAT 1 chrXV:110784-111229 ( 14) ACGAGAATCGAACCCGTGTCCCCACCTTG 1 chrVII:774153-774596 ( 61) TCCGGAATCGAACCGGAGACCTCTCCCAT 1 chrIV:1075314-1075719 ( 14) CCGAGGATCGAACTCGGGACCTTTGCCGT 1 chrXVI:856719-857131 ( 63) TCCGGAATCGAACCGGAGACCTCTCCCAT 1 chrXV:438427-438956 ( 61) AGGGGGCTCGAACCCCTGACATTTCGGTA 1 chrXII:374169-374709 ( 2) CCAGGACTTGAACCTGGAATCTTCTGGTT 1 chrV:492176-492600 ( 22) CCAGGACTTGAACCTGGAATCTTCTGGTT 1 chrXII:687635-688142 ( 29) CCCAGGATCGAACTGGGGACGTTCTGCGT 1 chrXI:379499-379917 ( 59) CCCAGGATCGAACTGGGGACGTTCTGCGT 1 chrVII:544417-544847 ( 3) CGGGGAATTGAACCCCGATCTGGCACGCG 1 chrX:541315-541415 ( 66) CGGGGAATTGAACCCCGATCTGGCACGCG 1 chrXIII:463366-463889 ( 12) CGGGGAATTGAACCCCGATCTGGCACGCG 1 chrIX:336198-336613 ( 2) CGGGGAATTGAACCCCGATCTGGCACGCG 1 chrIV:1095143-1095650 ( 32) CTGTGGATCGAACACAGGACCTCCAGATA 1 chrXVI:55895-56521 ( 19) ACAGGAATTGAACCTGCAACCCTTCGATT 1 chrXVI:775622-776018 ( 3) CTCAGGATCGAACTAAGGACCAACAGATT 1 chrIV:1175643-1176150 ( 19) GGGAGGTTCGAACTCTCGACCTTCAGATT 1 chrX:354065-354165 ( 52) GGGCGAGTCGAACGCCCGATCTCAAGATT 1 chrXIII:362877-363347 ( 37) CCTAGAATCGAACCAGGGTTTCATCGGCC 1 chrV:207155-207610 ( 60) CCTAGAATCGAACCAGGGTTTCATCGGCC 1 chrV:434360-434795 ( 22) CCTAGAATCGAACCAGGGTTTCATCGGCC 1 chrVI:137283-137752 ( 27) GTGAGGGTTGAACTCACGATCTTGCGATT 1 chrVII:483211-483799 ( 23) CCCGGTCTCGAAGCGGAGATCCGGCGATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRATCGAACCSVKGAYCYYCHSRTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 40968 bayes= 11.7857 E= 3.4e-189 36 140 -165 -296 -1229 101 85 -15 -237 101 140 -237 -64 -324 201 -396 -1229 -1229 240 -1229 95 -1229 101 -396 68 -43 22 -115 -1229 -1229 -1229 168 -1229 193 -1229 -15 -1229 -1229 240 -1229 168 -1229 -1229 -1229 168 -1229 -1229 -1229 -1229 237 -324 -1229 -396 215 -324 -137 -196 140 93 -237 4 76 85 -396 -237 -124 135 29 -15 -1229 193 -1229 108 -1229 -165 -15 -1229 152 -1229 56 -396 185 -124 -50 -396 67 -124 95 -164 135 -92 4 -79 152 -224 -37 -37 93 -43 -26 -1229 93 176 -1229 43 8 93 -396 -164 -43 -165 117 -237 -65 8 99 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRATCGAACCSVKGAYCYYCHSRTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 50 E= 3.4e-189 0.400000 0.500000 0.060000 0.040000 0.000000 0.380000 0.340000 0.280000 0.060000 0.380000 0.500000 0.060000 0.200000 0.020000 0.760000 0.020000 0.000000 0.000000 1.000000 0.000000 0.600000 0.000000 0.380000 0.020000 0.500000 0.140000 0.220000 0.140000 0.000000 0.000000 0.000000 1.000000 0.000000 0.720000 0.000000 0.280000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.980000 0.020000 0.000000 0.020000 0.840000 0.020000 0.120000 0.080000 0.500000 0.360000 0.060000 0.320000 0.320000 0.340000 0.020000 0.060000 0.080000 0.480000 0.380000 0.280000 0.000000 0.720000 0.000000 0.660000 0.000000 0.060000 0.280000 0.000000 0.540000 0.000000 0.460000 0.020000 0.680000 0.080000 0.220000 0.020000 0.300000 0.080000 0.600000 0.100000 0.480000 0.100000 0.320000 0.180000 0.540000 0.040000 0.240000 0.240000 0.360000 0.140000 0.260000 0.000000 0.360000 0.640000 0.000000 0.420000 0.200000 0.360000 0.020000 0.100000 0.140000 0.060000 0.700000 0.060000 0.120000 0.200000 0.620000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRATCGAACCSVKGAYCYYCHSRTT MEME-1 regular expression -------------------------------------------------------------------------------- [CA][CGT][GC][GA]G[AG][AG]T[CT]GAACC[CG][GAC][GT][GA][AT][CT][CT][TC][CT][CT][CTA][GC][AGC]T[TG] -------------------------------------------------------------------------------- Time 318.16 secs. ******************************************************************************** ******************************************************************************** MOTIF BSSRDSSCYYWAMCMACTRGGCCAHRNRVC MEME-2 width = 30 sites = 65 llr = 1110 E-value = 1.8e-176 ******************************************************************************** -------------------------------------------------------------------------------- Motif BSSRDSSCYYWAMCMACTRGGCCAHRNRVC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2215211121464:38::423::a442341 pos.-specific C 434:144733:15a5:8:22:99:413146 probability G 2444456121:2::21::4571:::42623 matrix T 21213::14552::::1a1:::1:2121:1 bits 2.4 * 2.2 * 1.9 * * 1.7 * ** *** Relative 1.4 * ** **** Entropy 1.2 * ** **** (24.6 bits) 1.0 ** ** *** **** 0.7 *** * ****** ***** * * 0.5 *** *** ** ****** ******* *** 0.2 ******** ***************** *** 0.0 ------------------------------ Multilevel CGGAGGGCTTTACCCACTAGGCCAAGCGAC consensus TCCGTCC CCA A A GAA CAAACG sequence G A C T G G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSSRDSSCYYWAMCMACTRGGCCAHRNRVC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrVII:774153-774596 - 26 1.91e-13 CCCATGCTAA GGGAGCGCGCTACCGACTACGCCACACGCC CAATTAATTG chrX:197177-197277 + 14 1.91e-13 CCCATGCTAA GGGAGCGCGCTACCGACTACGCCACACGCC CTAATATTAT chrXI:517808-518144 - 63 1.91e-13 CATGCTAA GGGAGCGCGCTACCGACTACGCCACACGCC CATAGTAGAT chrXVI:856719-857131 - 28 1.91e-13 CCCATGCTAA GGGAGCGCGCTACCGACTACGCCACACGCC CGAATCTTGT chrVII:738881-739353 - 56 1.78e-12 CGTTATTAGC ACGGTGCCTTAACCAACTGGGCCAAGAGAC CTATTTTTTT chrV:551143-551532 + 41 1.78e-12 CGTTATTAGC ACGGTGCCTTAACCAACTGGGCCAAGAGAC CTGTAATCTG chrXVI:819307-819786 - 34 1.78e-12 CGTTATTAGC ACGGTGCCTTAACCAACTGGGCCAAGAGAC CATTCTATTG chrIX:210484-210918 - 15 1.78e-12 CGTTATTAGC ACGGTGCCTTAACCAACTGGGCCAAGAGAC CAGATATTTC chrIX:183288-183700 + 39 1.78e-12 CGTTATTAGC ACGGTGCCTTAACCAACTGGGCCAAGAGAC CAGGAATTTG chrV:311825-312301 + 52 2.35e-11 TCCTTGCAAG GGAAGCGCGCTACCAACTGCGCCATGTGCC CAGAATTTCT chrXV:854028-854443 + 44 2.35e-11 TCCTTGCAAG GGAAGCGCGCTACCAACTGCGCCATGTGCC CTGATGACTG chrVIII:85207-85550 + 13 4.07e-10 GCGTGTTAAG CAGATGCCATAACCGACTAGACCACGAAAC CAAATTCTTA chrXII:687635-688142 + 64 4.07e-10 GCGTGTTAAG CAGATGCCATAACCGACTAGACCACGAAAC CTATTAT chrXI:379499-379917 - 23 4.07e-10 GCGTGTTAAG CAGATGCCATAACCGACTAGACCACGAAAC CTATTAATCT chrXI:308018-308386 + 35 4.07e-10 GCGTGTTAAG CAGATGCCATAACCGACTAGACCACGAAAC CACTTAATTG chrVII:823285-823692 - 45 4.07e-10 GCGTGTTAAG CAGATGCCATAACCGACTAGACCACGAAAC CACTCTTATT chrXII:784171-784592 - 24 4.63e-10 GGAAATAGCA GGCATCGCCTTAACCACTCGGCCACTGGGA CGGTTGAACA chrIV:1150649-1151141 + 66 4.63e-10 GGAAATAGCA GGCATCGCCTTAACCACTCGGCCACTGGGA CTGAA chrVII:857242-857664 + 58 5.25e-10 TTTCTTGAAT CAGGCGCCTTAGACCGCTCGGCCAAACAAC CACTTATTTG chrXII:628180-628685 - 2 5.25e-10 TTTCTTGAAT CAGGCGCCTTAGACCGCTCGGCCAAACAAC C chrIX:325555-325988 - 28 5.96e-10 ACATTACTAG TGTGGCGCCTTACCAACTTGGCCATAGAAG CTCGTATTTT chrXV:353860-354296 + 55 5.96e-10 ACATTACTAG TGTGGCGCCTTACCAACTTGGCCATAGAAG CAGTAAACCG chrXII:592372-592817 + 45 5.96e-10 CCACCTAAAT CTGACGCCTTAAACCACTCGGCCAAACTCC CATTGTATGT chrXV:113576-113995 - 68 5.96e-10 TAG TGTGGCGCCTTACCAACTTGGCCATAGAAG CTAAATCTCT chrXIV:560487-560974 + 55 5.96e-10 ACATTACTAG TGTGGCGCCTTACCAACTTGGCCATAGAAG CCCGTTATTA chrXVI:689368-689822 - 21 1.40e-09 AGATTTCAAG TCTGTCGCCTTAACCACTCGGCCATAGTGC CCAAAATAAT chrXVI:810454-810902 - 49 1.76e-09 GATTAACAGT CGCACGCCTTAACCAACTTGGCCATGGAGT CGCAAATAAT chrIII:127543-127899 - 46 1.76e-09 GATTAACAGT CGCACGCCTTAACCAACTTGGCCATGGAGT CATTTTATCT chrVI:137283-137752 + 62 1.76e-09 GATTAACAGT CGCACGCCTTAACCAACTTGGCCATGGAGT CAGTCACTT chrXV:228126-228546 - 46 1.76e-09 GATTAACAGT CGCACGCCTTAACCAACTTGGCCATGGAGT CTAATATTTT chrIV:884193-884610 - 11 2.48e-09 TTGCTATAAG CACGAAGCTCTAACCACTGAGCTACACGAG CATTTTCGAA chrX:523809-523909 + 69 4.30e-09 AGATTTCTAA TCTTTCGCCTTAACCACTCGGCCAAGTTGC CT chrVIII:132854-133370 + 15 4.30e-09 AGATTTCTAA TCTTTCGCCTTAACCACTCGGCCAAGTTGC CACTTATTAT chrXV:438427-438956 - 3 4.79e-09 CGCTTAAAAG CCGAACGCTCTACCAACTGAGCTAACAAGG AT chrVII:115300-115743 - 18 4.79e-09 CGCTTAAAAG CCGAACGCTCTACCAACTGAGCTAACAAGG ATGAGTTCTT chrVIII:388735-389187 + 54 7.28e-09 AGTCGCCCAA AGCGAGAATCATACCACTAGACCACACGCC CATGTATCTG chrXV:300864-301413 - 10 7.28e-09 AGTCGCCCAA AGCGAGAATCATACCACTAGACCACACGCC CGATCTTTT chrXII:92347-92804 - 24 7.28e-09 AGTCGCCCAA AGCGAGAATCATACCACTAGACCACACGCC CTTATTAACT chrXI:490769-491146 - 62 8.93e-09 GGTTCGTAG CCAGACGCCGTGACCATTGGGCCACGAGGA ACAAGAATTA chrV:492176-492600 + 56 8.93e-09 TGGTTCGTAG CCAGACGCCGTGACCATTGGGCCACGAGGA ATAGGATGTT chrVI:5065-5497 - 42 1.33e-08 GCGTAAATGG CACAGGGTATAGACCGCTGAGGCAAGTGCC GTGCATAATG chrVII:374-763 - 6 1.33e-08 GGGTAAATGG CACAGGGTATAGACCGCTGAGGCAAGTGCC GTGAA chrI:406-780 - 1 1.33e-08 GGGTAAATGG CACAGGGTATAGACCGCTGAGGCAAGTGCC chrXI:665917-666335 + 56 1.33e-08 GCGTAAATGG CACAGGGTATAGACCGCTGAGGCAAGTGCC GTGCATAATG chrII:6159-6621 - 11 2.59e-08 GGGTAAATGG CTCAGGGTATAGACCGCTGAGGCAAGTGCC GTGCATAATG chrXIV:783311-783702 + 50 2.59e-08 GGGTAAATGG CTCAGGGTATAGACCGCTGAGGCAAGTGCC GTGCATAATG chrVIII:237685-238169 + 32 6.80e-08 TTTTCTTCAG TCTGGCGCTCTCCCAACTGAGCTAAATCCG CTTACTATTT chrXVI:622366-622835 + 51 6.80e-08 TTTTCTTCAG TCTGGCGCTCTCCCAACTGAGCTAAATCCG CATATCAGAA chrVIII:358319-358788 + 36 6.80e-08 TTTTCTTCAG TCTGGCGCTCTCCCAACTGAGCTAAATCCG CTTACTATTT chrXIV:631717-632108 + 25 1.20e-07 CCGCACCCTA AGCGAGAATCATACCTCTAGACCACACGCC CGGTAGAAGT chrIII:123417-123825 + 47 1.20e-07 CCGCACCCTA AGCGAGAATCATACCTCTAGACCACACGCC CTCCTTTGAA chrIV:1201516-1202002 - 42 1.52e-07 TGATTAAGAG TCATACGCGCTACCGATTGCGCCAACAAGG CTATTTATTT chrV:435609-436012 + 34 1.52e-07 TGATTAAGAG TCATACGCGCTACCGATTGCGCCAACAAGG CTCTTATTGT chrVII:930810-931225 + 26 1.64e-07 AACGATGGCA ACGTTGGATTTTACCACTAAACCACTTGCG CTTACTGATT chrVI:162036-162412 - 55 1.64e-07 AACGATGGCA ACGTTGGATTTTACCACTAAACCACTTGCG CTTGTTTTCT chrV:250101-250549 - 12 2.76e-07 CGGATCAAAA CCGAAAGTGATAACCACTACACTATAGGAC CAGTACAACT chrIV:645033-645403 + 26 2.76e-07 CGGATCAAAA CCGAAAGTGATAACCACTACACTATAGGAC CGTAACAACT chrVII:766038-766583 + 67 3.41e-07 CAGGCGACTG CGCTGCGGCCAGCCCGTGAGACCACCCGAG GGAA chrXV:110784-111229 + 47 3.41e-07 ACCTTGGAAG GGTGGGATGATAACCACTACACTAACCGCC CGGGTTAATT chrXI:162275-162746 + 68 4.81e-07 CTGATTAGAA GTCAGACGCGTTGCCATTACGCCACGCGAG CTA chrII:405681-406164 - 7 4.81e-07 CTGATTAGAA GTCAGACGCGTTGCCATTACGCCACGCGAG CTACTA chrVII:405290-405725 - 14 4.81e-07 CTGATTAGAA GTCAGACGCGTTGCCATTACGCCACGCGAG CTACTGTTTG chrX:538345-538445 - 56 4.81e-07 CTCCTTAGGA GGGAGACGCGTTACCATTACGCCAACGGAA CCAACTTGGT chrIII:163383-164025 + 56 7.12e-07 CTAGGGGAAG TGCGCGCGGATACCGAATCGGCCATCGAAC CGGCCACCCG chrXI:27-242 + 60 1.56e-06 ACCTCTCCAC TCGTTACCCTGCCCCACTCAACCATACCAC TCCCACCCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSSRDSSCYYWAMCMACTRGGCCAHRNRVC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:774153-774596 1.9e-13 25_[-2]_45 chrX:197177-197277 1.9e-13 13_[+2]_57 chrXI:517808-518144 1.9e-13 62_[-2]_8 chrXVI:856719-857131 1.9e-13 27_[-2]_43 chrVII:738881-739353 1.8e-12 55_[-2]_15 chrV:551143-551532 1.8e-12 40_[+2]_30 chrXVI:819307-819786 1.8e-12 33_[-2]_37 chrIX:210484-210918 1.8e-12 14_[-2]_56 chrIX:183288-183700 1.8e-12 38_[+2]_32 chrV:311825-312301 2.3e-11 51_[+2]_19 chrXV:854028-854443 2.3e-11 43_[+2]_27 chrVIII:85207-85550 4.1e-10 12_[+2]_58 chrXII:687635-688142 4.1e-10 63_[+2]_7 chrXI:379499-379917 4.1e-10 22_[-2]_48 chrXI:308018-308386 4.1e-10 34_[+2]_36 chrVII:823285-823692 4.1e-10 44_[-2]_26 chrXII:784171-784592 4.6e-10 23_[-2]_47 chrIV:1150649-1151141 4.6e-10 65_[+2]_5 chrVII:857242-857664 5.3e-10 57_[+2]_13 chrXII:628180-628685 5.3e-10 1_[-2]_69 chrIX:325555-325988 6e-10 27_[-2]_43 chrXV:353860-354296 6e-10 54_[+2]_16 chrXII:592372-592817 6e-10 44_[+2]_26 chrXV:113576-113995 6e-10 67_[-2]_3 chrXIV:560487-560974 6e-10 54_[+2]_16 chrXVI:689368-689822 1.4e-09 20_[-2]_50 chrXVI:810454-810902 1.8e-09 48_[-2]_22 chrIII:127543-127899 1.8e-09 45_[-2]_25 chrVI:137283-137752 1.8e-09 61_[+2]_9 chrXV:228126-228546 1.8e-09 45_[-2]_25 chrIV:884193-884610 2.5e-09 10_[-2]_60 chrX:523809-523909 4.3e-09 68_[+2]_2 chrVIII:132854-133370 4.3e-09 14_[+2]_56 chrXV:438427-438956 4.8e-09 2_[-2]_68 chrVII:115300-115743 4.8e-09 17_[-2]_53 chrVIII:388735-389187 7.3e-09 53_[+2]_17 chrXV:300864-301413 7.3e-09 9_[-2]_61 chrXII:92347-92804 7.3e-09 23_[-2]_47 chrXI:490769-491146 8.9e-09 61_[-2]_9 chrV:492176-492600 8.9e-09 55_[+2]_15 chrVI:5065-5497 1.3e-08 41_[-2]_29 chrVII:374-763 1.3e-08 5_[-2]_65 chrI:406-780 1.3e-08 [-2]_70 chrXI:665917-666335 1.3e-08 55_[+2]_15 chrII:6159-6621 2.6e-08 10_[-2]_60 chrXIV:783311-783702 2.6e-08 49_[+2]_21 chrVIII:237685-238169 6.8e-08 31_[+2]_39 chrXVI:622366-622835 6.8e-08 50_[+2]_20 chrVIII:358319-358788 6.8e-08 35_[+2]_35 chrXIV:631717-632108 1.2e-07 24_[+2]_46 chrIII:123417-123825 1.2e-07 46_[+2]_24 chrIV:1201516-1202002 1.5e-07 41_[-2]_29 chrV:435609-436012 1.5e-07 33_[+2]_37 chrVII:930810-931225 1.6e-07 25_[+2]_45 chrVI:162036-162412 1.6e-07 54_[-2]_16 chrV:250101-250549 2.8e-07 11_[-2]_59 chrIV:645033-645403 2.8e-07 25_[+2]_45 chrVII:766038-766583 3.4e-07 66_[+2]_4 chrXV:110784-111229 3.4e-07 46_[+2]_24 chrXI:162275-162746 4.8e-07 67_[+2]_3 chrII:405681-406164 4.8e-07 6_[-2]_64 chrVII:405290-405725 4.8e-07 13_[-2]_57 chrX:538345-538445 4.8e-07 55_[-2]_15 chrIII:163383-164025 7.1e-07 55_[+2]_15 chrXI:27-242 1.6e-06 59_[+2]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSSRDSSCYYWAMCMACTRGGCCAHRNRVC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BSSRDSSCYYWAMCMACTRGGCCAHRNRVC width=30 seqs=65 chrVII:774153-774596 ( 26) GGGAGCGCGCTACCGACTACGCCACACGCC 1 chrX:197177-197277 ( 14) GGGAGCGCGCTACCGACTACGCCACACGCC 1 chrXI:517808-518144 ( 63) GGGAGCGCGCTACCGACTACGCCACACGCC 1 chrXVI:856719-857131 ( 28) GGGAGCGCGCTACCGACTACGCCACACGCC 1 chrVII:738881-739353 ( 56) ACGGTGCCTTAACCAACTGGGCCAAGAGAC 1 chrV:551143-551532 ( 41) ACGGTGCCTTAACCAACTGGGCCAAGAGAC 1 chrXVI:819307-819786 ( 34) ACGGTGCCTTAACCAACTGGGCCAAGAGAC 1 chrIX:210484-210918 ( 15) ACGGTGCCTTAACCAACTGGGCCAAGAGAC 1 chrIX:183288-183700 ( 39) ACGGTGCCTTAACCAACTGGGCCAAGAGAC 1 chrV:311825-312301 ( 52) GGAAGCGCGCTACCAACTGCGCCATGTGCC 1 chrXV:854028-854443 ( 44) GGAAGCGCGCTACCAACTGCGCCATGTGCC 1 chrVIII:85207-85550 ( 13) CAGATGCCATAACCGACTAGACCACGAAAC 1 chrXII:687635-688142 ( 64) CAGATGCCATAACCGACTAGACCACGAAAC 1 chrXI:379499-379917 ( 23) CAGATGCCATAACCGACTAGACCACGAAAC 1 chrXI:308018-308386 ( 35) CAGATGCCATAACCGACTAGACCACGAAAC 1 chrVII:823285-823692 ( 45) CAGATGCCATAACCGACTAGACCACGAAAC 1 chrXII:784171-784592 ( 24) GGCATCGCCTTAACCACTCGGCCACTGGGA 1 chrIV:1150649-1151141 ( 66) GGCATCGCCTTAACCACTCGGCCACTGGGA 1 chrVII:857242-857664 ( 58) CAGGCGCCTTAGACCGCTCGGCCAAACAAC 1 chrXII:628180-628685 ( 2) CAGGCGCCTTAGACCGCTCGGCCAAACAAC 1 chrIX:325555-325988 ( 28) TGTGGCGCCTTACCAACTTGGCCATAGAAG 1 chrXV:353860-354296 ( 55) TGTGGCGCCTTACCAACTTGGCCATAGAAG 1 chrXII:592372-592817 ( 45) CTGACGCCTTAAACCACTCGGCCAAACTCC 1 chrXV:113576-113995 ( 68) TGTGGCGCCTTACCAACTTGGCCATAGAAG 1 chrXIV:560487-560974 ( 55) TGTGGCGCCTTACCAACTTGGCCATAGAAG 1 chrXVI:689368-689822 ( 21) TCTGTCGCCTTAACCACTCGGCCATAGTGC 1 chrXVI:810454-810902 ( 49) CGCACGCCTTAACCAACTTGGCCATGGAGT 1 chrIII:127543-127899 ( 46) CGCACGCCTTAACCAACTTGGCCATGGAGT 1 chrVI:137283-137752 ( 62) CGCACGCCTTAACCAACTTGGCCATGGAGT 1 chrXV:228126-228546 ( 46) CGCACGCCTTAACCAACTTGGCCATGGAGT 1 chrIV:884193-884610 ( 11) CACGAAGCTCTAACCACTGAGCTACACGAG 1 chrX:523809-523909 ( 69) TCTTTCGCCTTAACCACTCGGCCAAGTTGC 1 chrVIII:132854-133370 ( 15) TCTTTCGCCTTAACCACTCGGCCAAGTTGC 1 chrXV:438427-438956 ( 3) CCGAACGCTCTACCAACTGAGCTAACAAGG 1 chrVII:115300-115743 ( 18) CCGAACGCTCTACCAACTGAGCTAACAAGG 1 chrVIII:388735-389187 ( 54) AGCGAGAATCATACCACTAGACCACACGCC 1 chrXV:300864-301413 ( 10) AGCGAGAATCATACCACTAGACCACACGCC 1 chrXII:92347-92804 ( 24) AGCGAGAATCATACCACTAGACCACACGCC 1 chrXI:490769-491146 ( 62) CCAGACGCCGTGACCATTGGGCCACGAGGA 1 chrV:492176-492600 ( 56) CCAGACGCCGTGACCATTGGGCCACGAGGA 1 chrVI:5065-5497 ( 42) CACAGGGTATAGACCGCTGAGGCAAGTGCC 1 chrVII:374-763 ( 6) CACAGGGTATAGACCGCTGAGGCAAGTGCC 1 chrI:406-780 ( 1) CACAGGGTATAGACCGCTGAGGCAAGTGCC 1 chrXI:665917-666335 ( 56) CACAGGGTATAGACCGCTGAGGCAAGTGCC 1 chrII:6159-6621 ( 11) CTCAGGGTATAGACCGCTGAGGCAAGTGCC 1 chrXIV:783311-783702 ( 50) CTCAGGGTATAGACCGCTGAGGCAAGTGCC 1 chrVIII:237685-238169 ( 32) TCTGGCGCTCTCCCAACTGAGCTAAATCCG 1 chrXVI:622366-622835 ( 51) TCTGGCGCTCTCCCAACTGAGCTAAATCCG 1 chrVIII:358319-358788 ( 36) TCTGGCGCTCTCCCAACTGAGCTAAATCCG 1 chrXIV:631717-632108 ( 25) AGCGAGAATCATACCTCTAGACCACACGCC 1 chrIII:123417-123825 ( 47) AGCGAGAATCATACCTCTAGACCACACGCC 1 chrIV:1201516-1202002 ( 42) TCATACGCGCTACCGATTGCGCCAACAAGG 1 chrV:435609-436012 ( 34) TCATACGCGCTACCGATTGCGCCAACAAGG 1 chrVII:930810-931225 ( 26) ACGTTGGATTTTACCACTAAACCACTTGCG 1 chrVI:162036-162412 ( 55) ACGTTGGATTTTACCACTAAACCACTTGCG 1 chrV:250101-250549 ( 12) CCGAAAGTGATAACCACTACACTATAGGAC 1 chrIV:645033-645403 ( 26) CCGAAAGTGATAACCACTACACTATAGGAC 1 chrVII:766038-766583 ( 67) CGCTGCGGCCAGCCCGTGAGACCACCCGAG 1 chrXV:110784-111229 ( 47) GGTGGGATGATAACCACTACACTAACCGCC 1 chrXI:162275-162746 ( 68) GTCAGACGCGTTGCCATTACGCCACGCGAG 1 chrII:405681-406164 ( 7) GTCAGACGCGTTGCCATTACGCCACGCGAG 1 chrVII:405290-405725 ( 14) GTCAGACGCGTTGCCATTACGCCACGCGAG 1 chrX:538345-538445 ( 56) GGGAGACGCGTTACCATTACGCCAACGGAA 1 chrIII:163383-164025 ( 56) TGCGCGCGGATACCGAATCGGCCATCGAAC 1 chrXI:27-242 ( 60) TCGTTACCCTGCCCCACTCAACCATACCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSSRDSSCYYWAMCMACTRGGCCAHRNRVC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 40399 bayes= 11.4336 E= 1.8e-176 -75 108 8 -53 -75 84 103 -175 -175 91 103 -88 66 -1267 103 -134 -53 -62 103 -17 -134 103 138 -1267 -175 91 155 -1267 -153 181 -103 -117 -88 47 -3 31 -234 70 -103 79 52 -1267 -362 79 95 -162 -16 -88 47 147 -203 -1267 -1267 240 -1267 -1267 -2 143 -3 -1267 142 -1267 -45 -334 -433 216 -1267 -117 -1267 -1267 -362 166 25 -30 91 -134 -43 29 151 -1267 -25 -1267 197 -1267 -1267 226 -103 -1267 -1267 219 -1267 -117 168 -1267 -1267 -1267 31 103 -1267 -43 25 -62 124 -234 -34 63 29 -43 -2 -162 159 -234 36 97 29 -1267 -202 163 55 -234 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSSRDSSCYYWAMCMACTRGGCCAHRNRVC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 65 E= 1.8e-176 0.184615 0.400000 0.200000 0.215385 0.184615 0.338462 0.384615 0.092308 0.092308 0.353846 0.384615 0.169231 0.492308 0.000000 0.384615 0.123077 0.215385 0.123077 0.384615 0.276923 0.123077 0.384615 0.492308 0.000000 0.092308 0.353846 0.553846 0.000000 0.107692 0.661538 0.092308 0.138462 0.169231 0.261538 0.184615 0.384615 0.061538 0.307692 0.092308 0.538462 0.446154 0.000000 0.015385 0.538462 0.600000 0.061538 0.169231 0.169231 0.430769 0.523077 0.046154 0.000000 0.000000 1.000000 0.000000 0.000000 0.307692 0.507692 0.184615 0.000000 0.830769 0.000000 0.138462 0.030769 0.015385 0.846154 0.000000 0.138462 0.000000 0.000000 0.015385 0.984615 0.369231 0.153846 0.353846 0.123077 0.230769 0.230769 0.538462 0.000000 0.261538 0.000000 0.738462 0.000000 0.000000 0.907692 0.092308 0.000000 0.000000 0.861538 0.000000 0.138462 1.000000 0.000000 0.000000 0.000000 0.384615 0.384615 0.000000 0.230769 0.369231 0.123077 0.446154 0.061538 0.246154 0.292308 0.230769 0.230769 0.307692 0.061538 0.569231 0.061538 0.400000 0.369231 0.230769 0.000000 0.076923 0.584615 0.276923 0.061538 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSSRDSSCYYWAMCMACTRGGCCAHRNRVC MEME-2 regular expression -------------------------------------------------------------------------------- [CTG][GC][GC][AG][GTA][GC][GC]C[TC][TC][TA]A[CA]C[CA]ACT[AG][GAC][GA]CCA[ACT][GA][CAGT][GA][ACG][CG] -------------------------------------------------------------------------------- Time 609.63 secs. ******************************************************************************** ******************************************************************************** MOTIF WDATGTAYGGRTGTADDRDNK MEME-3 width = 21 sites = 71 llr = 865 E-value = 9.2e-074 ******************************************************************************** -------------------------------------------------------------------------------- Motif WDATGTAYGGRTGTADDRDNK MEME-3 Description -------------------------------------------------------------------------------- Simplified A 557:::7:::4:::6345322 pos.-specific C 1::::1:3:::::2:111122 probability G 2321a:2:a96:912223234 matrix T 32:9:9:6:1:9162432432 bits 2.4 2.2 * * 1.9 * ** 1.7 * ** * Relative 1.4 * ** ** Entropy 1.2 *** ***** (17.6 bits) 1.0 *** ***** 0.7 *********** 0.5 ************** 0.2 *************** * * 0.0 --------------------- Multilevel AAATGTATGGGTGTATAATGG consensus TGG GC A C ATGATT sequence T GGT A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WDATGTAYGGRTGTADDRDNK MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrVIII:505831-506184 + 43 5.50e-09 TGTCTGGGTG AAATGTATGGATGCATAATTG TCTCGAAAAT chrXII:241574-242001 - 63 6.90e-09 TTTACATTTT ATATGTACGGATGTAAAAAGG GAAATATTAA chrII:45012-45339 - 38 1.29e-08 AACATACATA GAATGTACGGATGCATGATTG TCTCAGCCTC chrXIII:551369-551782 + 2 1.58e-08 T AAATGTATGGGTGCGTAATGT ACAGATTTTA chrXI:431318-431656 - 50 2.29e-08 GATGTAAAAA TAGTGTATGGGTGTATTTGCG CTGTCAATTA chrXIII:224080-224369 + 15 2.29e-08 AATTTCAAAA AAATGTATGGATGTAAAATTC AGTAGTGTGT chrIII:30-545 - 41 2.74e-08 TGTGTGGGTG TGGTGTGTGGGTGTGGTGTGG GTGTGTGTGG chrXV:1028630-1029128 + 77 2.74e-08 TAAACAAATC AAATGTACGGATGCACAATGG TAA chrX:607871-607971 - 35 3.27e-08 GGGTTAAAAA GGATGTATGGATGGAGGGTTG GCATAAAAAT chrVIII:125916-126296 - 39 3.87e-08 GTAAAGATGT AGGTGTACGGATGCATTAACG TCTTTCGAGG chrXV:678805-679175 + 69 3.87e-08 TGGGTCCACA ATATGTACGGATGTATGGTCC CAAAAGAAAA chrII:415508-415862 + 47 4.56e-08 CTGGATGACA AAATGCATGGGTGTAAAAAAG GAAATGAGAC chrXII:262801-263124 - 46 5.35e-08 AAATTAACAT AAATGTATGGATGTATTATTA AATGTACTGA chrIV:1355723-1356004 + 25 7.27e-08 AAAATACTAT AAATGTATGGGTGTAATTTTA ACCGAATGTA chrXVI:731932-732303 - 30 7.27e-08 CAACCATCCT AAAGGTATGGGTGTACTGACG ATGCGATTAT chrIV:1359370-1359791 - 59 9.71e-08 CATGGGTGCG TAATGTACGGATGTTTAATGT CTTTTTAATC chrXIII:5307-5807 - 61 1.28e-07 GATTGTGTTA GGGTGTGTGGGTGTGGTGTGT GGGTGTGGGT chrIV:229513-229775 - 53 1.28e-07 ATAATCCTTC TGATGTACGGATGTTTTGTGT AAGATATGTA chrVIII:562252-562633 + 73 1.46e-07 AGTGTGGGTG TGGTGTGTGGGTGTGGGTGTG TGTGTGG chrVIII:556643-557208 + 61 1.46e-07 GTGTGGGTGT GTGTGTGTGGGTGTGTGTGGG TGTGGGTGTG chrVIII:382931-383340 + 15 1.46e-07 TTTATTTTCA TGATGTATGGGTGTATCGGAT GTTCGGATGT chrV:6158-6557 - 35 1.46e-07 AAGGTGAGCA TGGTGTGTGGGTGTGGGTGTG GGTGAAGTAA chrII:89662-89931 + 54 1.46e-07 GTGTTAAAGA GGGTGTATGGATGTAAAGTCA CAAAAGTTAG chrXIV:783850-784187 + 68 1.66e-07 AGTGTTAGGG TAGTGTGTGGGTGTGGTGTGT GTGGGTGTGT chrIX:68207-68517 - 31 1.66e-07 TACATCTTAG TAATGTACGGATGTAATAAAC TCAAATTGCA chrVII:254128-254538 - 38 1.88e-07 GCATATTGAA AGATGTATGGGTTCAAAAATG TCCGTATTCA chrXV:79774-80113 + 54 1.88e-07 CACTTATTTA ATATGTACGGGTGTTTACATG GAGTTGCTTT chrIX:254243-254548 + 12 2.13e-07 GCGGCAATTA GAATGTGTGGGTGCGGAAGCT CGCCGCTCCC chrXII:650967-651300 - 50 2.13e-07 CTACCATGAG AAATGTGTGGGTGTTGAGATA ATTGTTGGGA chrVI:223924-224199 + 45 3.79e-07 GGGTCTAAGA GTATGTACGGATGTAAAAGAA AACAGTACTA chrVI:221755-222084 + 50 4.23e-07 TGGGTGTTAA AAATGTACGGGTGAAAAAAGT CTTATTTTGT chrVI:95474-95890 + 3 4.70e-07 TC CGGTGTGTGGGTGCATGACTG ATTGGTCCGG chrV:85093-85527 - 33 4.70e-07 GAATACATCG AGGGGTATGGGTGGATGATAT CACTGCAGCA chrXIII:288286-288722 + 10 5.23e-07 GTCTGGGTG ATATGTATGGACGTAGAATTG GTTTGATGTG chrIV:358103-358410 + 42 5.23e-07 CCTTGTCAGA TAATGTATGGGTGGTGTGTAC ACCAAGGTAT chrV:396212-396559 - 37 5.81e-07 GGGTTCACAA AAGTGTACGGATGTATACAAC AGGGAAAGAA chrXIV:63127-63604 + 2 6.43e-07 A AAATGTTCGGATGTAAAGTAG TATTGAAAAA chrVII:438598-438892 + 62 6.43e-07 TAACGTTCCA AAATGTATGGATGGTAAGGTC TTTTTCCAAG chrXV:505085-505485 - 77 7.12e-07 ATC ATATGTTTGGGTGTGATAAGG TTCATTGTGT chrIV:217147-217513 - 27 7.87e-07 TTATAGAATA AAATGTACGGGTTCAAAGCAG GGCCTCTTTT chrXIII:145898-146273 - 42 8.70e-07 GTATGGTGTA TGGTGTATGGATGTACAAAAA TGCTGTCTTC chrXII:257755-257988 - 57 1.16e-06 ATATGTACCT ATATGTATGTATGTATGTGCG TACGATTTTT chrXII:781469-781839 + 51 1.16e-06 GGGTTTATGA AAATGCACGGATGCATTTTCT CTAGATGAAA chrXV:168003-168431 + 20 1.41e-06 AAACTTAAAT ATAGGCACGGGTGTTTAAAGC CGCCCACACA chrXIII:754413-754794 + 18 1.55e-06 ACGCTATTCT GGATGTATGGGGGTATTTTAT GTTTGGGTTA chrIV:1300947-1301314 - 22 1.55e-06 CAAACATCCA CAGTGCACGGATGTTTGAAGG AAAATTGCTA chrXVI:406167-406552 - 55 1.70e-06 TTGGAGGTGG AAAGGTACGGATGTTAAACTT CATAAAATGG chrIV:117144-117568 - 73 1.86e-06 AATGTAA AAAGTTATGGGTGTAGATATG TATGGGTCTG chrIX:99638-100007 + 37 2.23e-06 TTTCATGAAT AAATGTACTGGTGTTACATGG TGTACCGATG chrX:391778-391878 - 61 3.75e-06 CCGCTCGCAG GGAGGTCTGGGTGTGGGGCGT GTGCGACCTC chrIII:125041-125477 + 36 3.75e-06 GCTTCTCTAT TTATGTGTGGGTTTATTAAAA TAGTTAGAAT chrX:265387-265487 + 58 3.75e-06 GCACAAAATG CGAGGTGTGGGTGCAATCAAG ACTCCGATCC chrIII:163383-164025 + 22 4.08e-06 TTAACGATCA TATGGTATGGGTGCACGTGGG ATTCTAGGGG chrV:23455-24001 - 12 4.08e-06 ATTAAATGAG AAATGTGGGGGTGGGGTATGC GTTTCATGTG chrXI:618836-619198 + 43 4.43e-06 CAAATCTATT AGAGGCACGGATGGAAATAGT ATTTAAAAAG chrIV:579061-579381 - 28 4.43e-06 GTCTACTTTA TGGTTTATGGGTGGTAAAAGG CTTATATTAT chrXV:161132-161386 + 36 4.80e-06 ATAGGAATCC CGATGTATGGGTTTGGTTGCC AGAAAAGAGG chrIV:308024-308378 - 66 6.59e-06 TTGCCTGCAT ATATGTAAGGATGTAACAGGA AATGTATGGG chrXVI:829002-829429 + 55 6.59e-06 ATTGACCGGA TGATGTAAGGATGCATGTCCC TACTGTTTTG chrXV:866577-866917 + 58 7.68e-06 AGCATTCTGG GTTTGTATGGGTGTTACACCG GTTTTTCTTT chrV:354698-355336 + 61 8.28e-06 ATCATACAGT GTATGTATGGGGTTAGGAGCC ACCTTCCAAC chrXV:253825-254115 - 20 8.28e-06 TAAATCAATG TTATGTCTGGGCGTATAGTCC CGGAAACCGT chrXIV:426818-427277 - 21 8.92e-06 GTGCGTGCAT GTATGTGTGTATGTATATTTA TATATATATA chrVIII:296834-297221 - 73 1.11e-05 CATGCTG TGATGTACTGGTGGACGAAAT TGTGACCCAT chrII:82173-82609 - 43 1.28e-05 TCTGAACAAA TATGGTGCGGATGCATTAAGA TTGTACTTGA chrIV:556270-556668 + 61 1.37e-05 CATTTTTAGT TTATGTATGTGTTTTTTGTAG TTATAGATTT chrXIII:630052-630488 + 25 1.47e-05 AGTTCTTTTT ATATGTATGGATATATGCTCT TTTTTTGAAG chrVIII:148952-149267 + 22 1.47e-05 TATAATCCAA TGGTGCATGGGTGAAAATGTA TGGGCTAAAT chrV:433220-433656 + 23 1.47e-05 TCCATTAATA GAATTTACGGGTTTTATGATG AATGTAAGAG chrXIII:431735-432165 + 1 2.19e-05 . TAATGCGCGTGTGCGGGGAAT TTCGTTGTCA chrXI:486-1034 - 76 2.66e-05 AATT GAGTGTGTTTATGTATTATTG TTGAAGAGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WDATGTAYGGRTGTADDRDNK MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVIII:505831-506184 5.5e-09 42_[+3]_37 chrXII:241574-242001 6.9e-09 62_[-3]_17 chrII:45012-45339 1.3e-08 37_[-3]_42 chrXIII:551369-551782 1.6e-08 1_[+3]_78 chrXI:431318-431656 2.3e-08 49_[-3]_30 chrXIII:224080-224369 2.3e-08 14_[+3]_65 chrIII:30-545 2.7e-08 40_[-3]_39 chrXV:1028630-1029128 2.7e-08 76_[+3]_3 chrX:607871-607971 3.3e-08 34_[-3]_45 chrVIII:125916-126296 3.9e-08 38_[-3]_41 chrXV:678805-679175 3.9e-08 68_[+3]_11 chrII:415508-415862 4.6e-08 46_[+3]_33 chrXII:262801-263124 5.4e-08 45_[-3]_34 chrIV:1355723-1356004 7.3e-08 24_[+3]_55 chrXVI:731932-732303 7.3e-08 29_[-3]_50 chrIV:1359370-1359791 9.7e-08 58_[-3]_21 chrXIII:5307-5807 1.3e-07 60_[-3]_19 chrIV:229513-229775 1.3e-07 52_[-3]_27 chrVIII:562252-562633 1.5e-07 72_[+3]_7 chrVIII:556643-557208 1.5e-07 60_[+3]_19 chrVIII:382931-383340 1.5e-07 14_[+3]_65 chrV:6158-6557 1.5e-07 34_[-3]_45 chrII:89662-89931 1.5e-07 53_[+3]_26 chrXIV:783850-784187 1.7e-07 67_[+3]_12 chrIX:68207-68517 1.7e-07 30_[-3]_49 chrVII:254128-254538 1.9e-07 37_[-3]_42 chrXV:79774-80113 1.9e-07 53_[+3]_26 chrIX:254243-254548 2.1e-07 11_[+3]_68 chrXII:650967-651300 2.1e-07 49_[-3]_30 chrVI:223924-224199 3.8e-07 44_[+3]_35 chrVI:221755-222084 4.2e-07 49_[+3]_30 chrVI:95474-95890 4.7e-07 2_[+3]_77 chrV:85093-85527 4.7e-07 32_[-3]_47 chrXIII:288286-288722 5.2e-07 9_[+3]_70 chrIV:358103-358410 5.2e-07 41_[+3]_38 chrV:396212-396559 5.8e-07 36_[-3]_43 chrXIV:63127-63604 6.4e-07 1_[+3]_78 chrVII:438598-438892 6.4e-07 61_[+3]_18 chrXV:505085-505485 7.1e-07 76_[-3]_3 chrIV:217147-217513 7.9e-07 26_[-3]_53 chrXIII:145898-146273 8.7e-07 41_[-3]_38 chrXII:257755-257988 1.2e-06 56_[-3]_23 chrXII:781469-781839 1.2e-06 50_[+3]_29 chrXV:168003-168431 1.4e-06 19_[+3]_60 chrXIII:754413-754794 1.5e-06 17_[+3]_62 chrIV:1300947-1301314 1.5e-06 21_[-3]_58 chrXVI:406167-406552 1.7e-06 54_[-3]_25 chrIV:117144-117568 1.9e-06 72_[-3]_7 chrIX:99638-100007 2.2e-06 36_[+3]_43 chrX:391778-391878 3.7e-06 60_[-3]_19 chrIII:125041-125477 3.7e-06 35_[+3]_44 chrX:265387-265487 3.7e-06 57_[+3]_22 chrIII:163383-164025 4.1e-06 21_[+3]_58 chrV:23455-24001 4.1e-06 11_[-3]_68 chrXI:618836-619198 4.4e-06 42_[+3]_37 chrIV:579061-579381 4.4e-06 27_[-3]_52 chrXV:161132-161386 4.8e-06 35_[+3]_44 chrIV:308024-308378 6.6e-06 65_[-3]_14 chrXVI:829002-829429 6.6e-06 54_[+3]_25 chrXV:866577-866917 7.7e-06 57_[+3]_22 chrV:354698-355336 8.3e-06 60_[+3]_19 chrXV:253825-254115 8.3e-06 19_[-3]_60 chrXIV:426818-427277 8.9e-06 20_[-3]_59 chrVIII:296834-297221 1.1e-05 72_[-3]_7 chrII:82173-82609 1.3e-05 42_[-3]_37 chrIV:556270-556668 1.4e-05 60_[+3]_19 chrXIII:630052-630488 1.5e-05 24_[+3]_55 chrVIII:148952-149267 1.5e-05 21_[+3]_58 chrV:433220-433656 1.5e-05 22_[+3]_57 chrXIII:431735-432165 2.2e-05 [+3]_79 chrXI:486-1034 2.7e-05 75_[-3]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WDATGTAYGGRTGTADDRDNK MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WDATGTAYGGRTGTADDRDNK width=21 seqs=71 chrVIII:505831-506184 ( 43) AAATGTATGGATGCATAATTG 1 chrXII:241574-242001 ( 63) ATATGTACGGATGTAAAAAGG 1 chrII:45012-45339 ( 38) GAATGTACGGATGCATGATTG 1 chrXIII:551369-551782 ( 2) AAATGTATGGGTGCGTAATGT 1 chrXI:431318-431656 ( 50) TAGTGTATGGGTGTATTTGCG 1 chrXIII:224080-224369 ( 15) AAATGTATGGATGTAAAATTC 1 chrIII:30-545 ( 41) TGGTGTGTGGGTGTGGTGTGG 1 chrXV:1028630-1029128 ( 77) AAATGTACGGATGCACAATGG 1 chrX:607871-607971 ( 35) GGATGTATGGATGGAGGGTTG 1 chrVIII:125916-126296 ( 39) AGGTGTACGGATGCATTAACG 1 chrXV:678805-679175 ( 69) ATATGTACGGATGTATGGTCC 1 chrII:415508-415862 ( 47) AAATGCATGGGTGTAAAAAAG 1 chrXII:262801-263124 ( 46) AAATGTATGGATGTATTATTA 1 chrIV:1355723-1356004 ( 25) AAATGTATGGGTGTAATTTTA 1 chrXVI:731932-732303 ( 30) AAAGGTATGGGTGTACTGACG 1 chrIV:1359370-1359791 ( 59) TAATGTACGGATGTTTAATGT 1 chrXIII:5307-5807 ( 61) GGGTGTGTGGGTGTGGTGTGT 1 chrIV:229513-229775 ( 53) TGATGTACGGATGTTTTGTGT 1 chrVIII:562252-562633 ( 73) TGGTGTGTGGGTGTGGGTGTG 1 chrVIII:556643-557208 ( 61) GTGTGTGTGGGTGTGTGTGGG 1 chrVIII:382931-383340 ( 15) TGATGTATGGGTGTATCGGAT 1 chrV:6158-6557 ( 35) TGGTGTGTGGGTGTGGGTGTG 1 chrII:89662-89931 ( 54) GGGTGTATGGATGTAAAGTCA 1 chrXIV:783850-784187 ( 68) TAGTGTGTGGGTGTGGTGTGT 1 chrIX:68207-68517 ( 31) TAATGTACGGATGTAATAAAC 1 chrVII:254128-254538 ( 38) AGATGTATGGGTTCAAAAATG 1 chrXV:79774-80113 ( 54) ATATGTACGGGTGTTTACATG 1 chrIX:254243-254548 ( 12) GAATGTGTGGGTGCGGAAGCT 1 chrXII:650967-651300 ( 50) AAATGTGTGGGTGTTGAGATA 1 chrVI:223924-224199 ( 45) GTATGTACGGATGTAAAAGAA 1 chrVI:221755-222084 ( 50) AAATGTACGGGTGAAAAAAGT 1 chrVI:95474-95890 ( 3) CGGTGTGTGGGTGCATGACTG 1 chrV:85093-85527 ( 33) AGGGGTATGGGTGGATGATAT 1 chrXIII:288286-288722 ( 10) ATATGTATGGACGTAGAATTG 1 chrIV:358103-358410 ( 42) TAATGTATGGGTGGTGTGTAC 1 chrV:396212-396559 ( 37) AAGTGTACGGATGTATACAAC 1 chrXIV:63127-63604 ( 2) AAATGTTCGGATGTAAAGTAG 1 chrVII:438598-438892 ( 62) AAATGTATGGATGGTAAGGTC 1 chrXV:505085-505485 ( 77) ATATGTTTGGGTGTGATAAGG 1 chrIV:217147-217513 ( 27) AAATGTACGGGTTCAAAGCAG 1 chrXIII:145898-146273 ( 42) TGGTGTATGGATGTACAAAAA 1 chrXII:257755-257988 ( 57) ATATGTATGTATGTATGTGCG 1 chrXII:781469-781839 ( 51) AAATGCACGGATGCATTTTCT 1 chrXV:168003-168431 ( 20) ATAGGCACGGGTGTTTAAAGC 1 chrXIII:754413-754794 ( 18) GGATGTATGGGGGTATTTTAT 1 chrIV:1300947-1301314 ( 22) CAGTGCACGGATGTTTGAAGG 1 chrXVI:406167-406552 ( 55) AAAGGTACGGATGTTAAACTT 1 chrIV:117144-117568 ( 73) AAAGTTATGGGTGTAGATATG 1 chrIX:99638-100007 ( 37) AAATGTACTGGTGTTACATGG 1 chrX:391778-391878 ( 61) GGAGGTCTGGGTGTGGGGCGT 1 chrIII:125041-125477 ( 36) TTATGTGTGGGTTTATTAAAA 1 chrX:265387-265487 ( 58) CGAGGTGTGGGTGCAATCAAG 1 chrIII:163383-164025 ( 22) TATGGTATGGGTGCACGTGGG 1 chrV:23455-24001 ( 12) AAATGTGGGGGTGGGGTATGC 1 chrXI:618836-619198 ( 43) AGAGGCACGGATGGAAATAGT 1 chrIV:579061-579381 ( 28) TGGTTTATGGGTGGTAAAAGG 1 chrXV:161132-161386 ( 36) CGATGTATGGGTTTGGTTGCC 1 chrIV:308024-308378 ( 66) ATATGTAAGGATGTAACAGGA 1 chrXVI:829002-829429 ( 55) TGATGTAAGGATGCATGTCCC 1 chrXV:866577-866917 ( 58) GTTTGTATGGGTGTTACACCG 1 chrV:354698-355336 ( 61) GTATGTATGGGGTTAGGAGCC 1 chrXV:253825-254115 ( 20) TTATGTCTGGGCGTATAGTCC 1 chrXIV:426818-427277 ( 21) GTATGTGTGTATGTATATTTA 1 chrVIII:296834-297221 ( 73) TGATGTACTGGTGGACGAAAT 1 chrII:82173-82609 ( 43) TATGGTGCGGATGCATTAAGA 1 chrIV:556270-556668 ( 61) TTATGTATGTGTTTTTTGTAG 1 chrXIII:630052-630488 ( 25) ATATGTATGGATATATGCTCT 1 chrVIII:148952-149267 ( 22) TGGTGCATGGGTGAAAATGTA 1 chrV:433220-433656 ( 23) GAATTTACGGGTTTTATGATG 1 chrXIII:431735-432165 ( 1) TAATGCGCGTGTGCGGGGAAT 1 chrXI:486-1034 ( 76) GAGTGTGTTTATGTATTATTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WDATGTAYGGRTGTADDRDNK MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 45520 bayes= 10.1583 E= 9.2e-074 53 -174 6 -7 53 -1279 71 -38 121 -1279 34 -288 -1279 -1279 -42 147 -1279 -1279 234 -288 -1279 -94 -1279 153 121 -274 25 -346 -346 84 -374 99 -1279 -1279 234 -288 -1279 -1279 230 -214 44 -1279 161 -1279 -1279 -274 -274 160 -446 -1279 223 -166 -346 16 -75 106 99 -1279 -4 -66 -1 -142 25 34 34 -174 34 -1 58 -174 50 -56 6 -116 6 34 -47 6 65 -14 -101 -16 121 -38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WDATGTAYGGRTGTADDRDNK MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 71 E= 9.2e-074 0.450704 0.056338 0.197183 0.295775 0.450704 0.000000 0.309859 0.239437 0.718310 0.000000 0.239437 0.042254 0.000000 0.000000 0.140845 0.859155 0.000000 0.000000 0.957746 0.042254 0.000000 0.098592 0.000000 0.901408 0.718310 0.028169 0.225352 0.028169 0.028169 0.338028 0.014085 0.619718 0.000000 0.000000 0.957746 0.042254 0.000000 0.000000 0.929577 0.070423 0.422535 0.000000 0.577465 0.000000 0.000000 0.028169 0.028169 0.943662 0.014085 0.000000 0.887324 0.098592 0.028169 0.211268 0.112676 0.647887 0.619718 0.000000 0.183099 0.197183 0.309859 0.070423 0.225352 0.394366 0.394366 0.056338 0.239437 0.309859 0.464789 0.056338 0.267606 0.211268 0.323944 0.084507 0.197183 0.394366 0.225352 0.197183 0.295775 0.281690 0.154930 0.169014 0.436620 0.239437 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WDATGTAYGGRTGTADDRDNK MEME-3 regular expression -------------------------------------------------------------------------------- [AT][AGT][AG]TGT[AG][TC]GG[GA]TG[TC]A[TAG][ATG][AGT][TA][GTA][GT] -------------------------------------------------------------------------------- Time 891.34 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:190031-190622 1.34e-01 100 chrIV:543585-543953 5.60e-01 100 chrXIV:502058-502494 6.91e-01 100 chrXVI:689368-689822 5.14e-06 20_[-2(1.40e-09)]_50 chrXI:326117-327372 1.63e-01 100 chrIV:599647-600357 4.57e-02 100 chrV:138454-139040 1.56e-08 3_[-1(1.06e-11)]_68 chrIII:177114-177595 4.32e-01 100 chrVII:472386-472822 6.93e-01 100 chrVIII:50504-50935 9.37e-01 100 chrV:27166-27555 1.97e-02 32_[+2(1.77e-05)]_38 chrIII:315602-316286 7.38e-01 100 chrXV:978727-979147 8.11e-02 100 chrXV:384679-385116 6.44e-01 100 chrII:38491-38927 9.50e-01 100 chrXII:28-279 6.42e-01 100 chrXII:262801-263124 4.67e-04 45_[-3(5.35e-08)]_34 chrVII:561421-561958 2.38e-02 100 chrXV:901446-901882 9.56e-01 100 chrXV:92939-93464 9.72e-01 100 chrIX:317938-318249 6.74e-01 100 chrXIV:560487-560974 4.00e-13 20_[+1(5.18e-11)]_5_[+2(5.96e-10)]_\ 16 chrIX:248657-249530 1.94e-01 100 chrXII:201764-202125 9.14e-01 100 chrIV:230086-230323 6.15e-01 100 chrXVI:856719-857131 6.94e-16 27_[-2(1.91e-13)]_5_[-1(4.64e-10)]_\ 9 chrVII:597185-597621 6.25e-02 100 chrXIV:576900-577292 9.40e-01 100 chrII:431199-431549 4.50e-01 100 chrVII:735243-735679 9.99e-01 100 chrXVI:117829-118025 8.46e-02 100 chrXV:228126-228546 2.12e-05 45_[-2(1.76e-09)]_25 chrVII:479200-483035 3.64e-01 100 chrI:28421-28978 3.99e-01 100 chrIX:129700-130247 8.11e-01 100 chrV:433220-433656 3.38e-02 22_[+3(1.47e-05)]_57 chrIX:332606-333192 2.97e-01 100 chrIII:1001-1308 9.05e-01 100 chrVI:137283-137752 2.76e-10 26_[+1(2.49e-08)]_6_[+2(1.76e-09)]_\ 9 chrVI:98910-99099 9.11e-03 37_[-1(5.51e-05)]_34 chrXII:818426-818808 7.36e-02 100 chrIV:1164947-1165373 4.52e-01 100 chrXI:517808-518144 1.87e-09 62_[-2(1.91e-13)]_8 chrXV:253825-254115 1.55e-02 19_[-3(8.28e-06)]_16_[+3(3.21e-05)]_\ 23 chrXII:232081-234075 2.67e-01 100 chrVIII:75980-76266 9.91e-01 100 chrI:71951-73592 6.45e-02 100 chrXV:905685-906121 6.91e-01 100 chrIX:388552-389140 9.71e-01 100 chrIV:1354784-1355220 9.56e-01 100 chrXVI:303531-303702 3.32e-02 100 chrXII:628180-628685 7.42e-06 1_[-2(5.25e-10)]_69 chrXII:931329-931765 1.27e-01 100 chrXVI:789535-789971 1.08e-01 100 chrXV:832398-832862 8.00e-01 100 chrIV:366254-366465 5.09e-02 15_[-1(9.83e-05)]_56 chrIX:141690-142156 9.79e-02 100 chrVII:115300-115743 4.30e-05 17_[-2(4.79e-09)]_53 chrII:258751-259187 5.34e-01 100 chrX:374262-374362 7.31e-09 52_[+1(1.06e-11)]_19 chrIV:1021569-1022035 9.51e-01 100 chrXVI:280601-281881 6.38e-01 100 chrVIII:105407-105744 4.83e-01 100 chrVII:1083624-1084012 2.43e-01 100 chrIV:1150649-1151141 2.38e-07 65_[+2(4.63e-10)]_5 chrXII:448390-448926 2.40e-07 49_[+1(2.26e-11)]_22 chrXV:779718-781000 8.18e-02 100 chrXIII:282724-283160 4.48e-01 100 chrXII:954187-954623 6.53e-01 100 chrII:168633-168810 3.24e-01 100 chrIX:316899-317145 5.58e-01 100 chrXV:980486-981033 7.66e-08 41_[-1(6.50e-11)]_30 chrIX:438851-439460 7.31e-01 100 chrVII:557613-557958 2.83e-01 100 chrXVI:695258-695367 7.13e-01 100 chrV:300197-300633 8.75e-01 100 chrIV:645033-645403 7.80e-05 25_[+2(2.76e-07)]_45 chrXV:285578-285777 1.42e-01 100 chrXVI:520164-520520 1.84e-02 100 chrIII:731-1068 3.58e-01 100 chrIV:1016955-1017477 2.19e-08 48_[+1(9.40e-13)]_23 chrIV:592487-592668 6.15e-01 100 chrVIII:358319-358788 2.89e-04 35_[+2(6.80e-08)]_35 chrVII:600959-601395 2.12e-01 100 chrXII:198930-199752 2.76e-01 100 chrVI:64259-64493 6.21e-01 100 chrIV:1013000-1013450 9.97e-01 100 chrV:402562-402998 2.46e-01 100 chrIV:541162-541854 8.19e-01 100 chrXII:784171-784592 1.30e-06 23_[-2(4.63e-10)]_47 chrIV:579061-579381 1.43e-02 27_[-3(4.43e-06)]_52 chrVIII:531418-531803 9.40e-01 100 chrXV:798118-798554 5.45e-01 100 chrV:23455-24001 4.88e-03 11_[-3(4.08e-06)]_68 chrXII:806753-806934 9.40e-01 100 chrXV:391468-392069 8.80e-01 100 chrIV:1013000-1013458 9.97e-01 100 chrXII:650967-651300 1.87e-03 49_[-3(2.13e-07)]_30 chrII:45012-45339 1.11e-05 37_[-3(1.29e-08)]_3_[+3(6.10e-06)]_\ 18 chrVII:882382-884112 1.20e-01 100 chrXVI:776366-776802 2.75e-01 100 chrII:236857-237248 8.22e-01 100 chrVIII:524631-524883 7.69e-01 100 chrV:85093-85527 7.52e-05 3_[-3(4.34e-05)]_8_[-3(4.70e-07)]_\ 47 chrIX:183288-183700 4.18e-18 3_[+1(2.10e-13)]_6_[+2(1.78e-12)]_\ 32 chrVIII:290854-291290 7.55e-01 100 chrXII:820108-820286 9.83e-01 100 chrIX:68805-69241 8.14e-01 100 chrXV:678805-679175 1.32e-05 68_[+3(3.87e-08)]_11 chrIII:127543-127899 2.18e-05 45_[-2(1.76e-09)]_25 chrIII:123417-123825 3.59e-14 13_[+1(2.10e-13)]_4_[+2(1.20e-07)]_\ 24 chrXVI:829002-829429 9.59e-04 54_[+3(6.59e-06)]_25 chrIV:324539-324975 4.97e-01 100 chrXI:587389-587825 9.60e-01 100 chrXV:516233-516424 8.46e-01 100 chrV:396212-396559 1.12e-03 36_[-3(5.81e-07)]_43 chrXVI:308391-308827 6.71e-01 100 chrXVI:338738-339106 1.21e-01 100 chrV:397612-397918 7.86e-01 100 chrIX:336198-336613 4.95e-07 1_[+1(1.50e-09)]_70 chrVI:95474-95890 4.11e-05 2_[+3(4.70e-07)]_77 chrX:123407-123507 9.94e-01 100 chrVI:221755-222084 1.95e-03 49_[+3(4.23e-07)]_30 chrXII:721840-722276 6.09e-01 100 chrXIII:123064-123269 9.38e-02 100 chrIV:1162744-1162937 9.16e-01 100 chrXI:99723-100037 1.68e-02 4_[-3(9.41e-05)]_75 chrVIII:375362-375731 2.26e-01 100 chrVI:224899-225350 1.37e-01 100 chrXI:486-1034 7.10e-02 75_[-3(2.66e-05)]_4 chrXIII:551369-551782 1.35e-04 1_[+3(1.58e-08)]_48_[-3(1.03e-05)]_\ 9 chrV:174627-175092 5.66e-01 100 chrX:73398-73498 9.46e-01 100 chrXIV:576900-577297 9.40e-01 100 chrXIII:287413-287839 7.12e-01 100 chrXIII:431735-432165 2.15e-02 [+3(2.19e-05)]_79 chrXV:1027875-1028303 9.40e-01 100 chrXI:322352-323081 1.98e-01 100 chrVII:401403-401787 2.82e-01 100 chrXVI:585667-586479 1.90e-01 100 chrIV:212346-212782 9.53e-01 100 chrXI:581040-581371 2.11e-01 100 chrXI:557138-557574 9.14e-01 100 chrVIII:455487-456176 7.37e-01 100 chrIII:82350-82773 7.78e-01 100 chrXIII:552872-553216 6.12e-01 100 chrII:392481-392845 6.51e-02 100 chrII:373049-373503 1.06e-02 100 chrVIII:382234-382824 9.45e-01 100 chrXIV:505570-505870 7.33e-01 100 chrXV:842442-842967 1.45e-02 51_[-2(4.28e-05)]_19 chrVII:287185-287645 2.41e-01 100 chrIX:254243-254548 1.73e-04 11_[+3(2.13e-07)]_29_[+3(4.34e-05)]_\ 18 chrXVI:731932-732303 9.07e-05 29_[-3(7.27e-08)]_50 chrXV:623258-623722 8.89e-01 100 chrXIV:239941-240281 6.65e-01 100 chrXII:837601-839523 3.52e-01 100 chrXVI:581884-582360 1.28e-08 25_[-1(1.37e-11)]_46 chrXII:92347-92804 2.09e-06 23_[-2(7.28e-09)]_47 chrVIII:451422-452031 9.83e-02 100 chrVII:310845-312230 9.48e-01 100 chrXVI:75004-75232 4.93e-02 100 chrVIII:379545-379881 1.96e-02 65_[+1(6.70e-05)]_6 chrX:348819-348919 2.77e-01 100 chrXII:211788-212224 4.06e-01 100 chrVIII:381446-382132 3.32e-02 100 chrIV:1163946-1164382 1.42e-01 100 chrXV:1003926-1004436 5.95e-01 100 chrIII:293796-294232 8.20e-01 100 chrXII:424029-424506 5.78e-01 100 chrXIII:123800-123944 8.96e-02 100 chrXIV:585828-586563 5.48e-01 100 chrXII:720519-720704 8.93e-01 100 chrII:371579-371918 3.48e-01 100 chrIX:386508-387022 6.00e-01 100 chrIV:1354535-1354860 9.44e-01 100 chrXVI:622366-622835 1.50e-04 50_[+2(6.80e-08)]_20 chrIX:177580-178069 4.72e-02 100 chrXV:409613-409969 9.87e-01 100 chrXII:813629-814065 4.83e-01 100 chrXIII:463366-463889 3.31e-06 11_[-1(1.50e-09)]_60 chrVII:545391-545825 9.65e-01 100 chrV:143875-144135 9.68e-01 100 chrXIV:351851-352442 8.35e-01 100 chrXI:309492-309785 4.01e-01 100 chrVII:648116-648415 1.41e-01 100 chrXIV:783311-783702 9.18e-06 49_[+2(2.59e-08)]_21 chrXI:260559-260923 7.93e-01 100 chrVII:970495-970931 9.81e-01 100 chrIV:217147-217513 2.23e-03 26_[-3(7.87e-07)]_53 chrXIII:880465-880890 2.53e-01 100 chrIV:357115-357783 7.04e-02 100 chrVII:806188-806438 9.36e-01 100 chrVII:323442-324178 5.56e-01 100 chrX:120543-120643 6.23e-01 100 chrXIII:290606-291007 2.67e-01 100 chrXII:86873-87158 2.11e-01 100 chrXVI:576043-576446 3.32e-01 100 chrXII:187271-187602 2.67e-02 63_[-3(5.47e-05)]_16 chrIV:1095143-1095650 7.18e-06 31_[+1(3.41e-09)]_40 chrXIII:301583-302019 6.85e-01 100 chrIV:1437873-1438309 6.99e-01 100 chrXII:589055-589297 4.84e-01 100 chrVI:145362-145798 1.49e-01 100 chrXVI:450845-451063 2.83e-02 100 chrV:377862-378267 4.82e-01 100 chrXV:900701-900994 9.75e-01 100 chrVIII:126463-126888 5.11e-01 100 chrII:375941-376518 5.52e-01 100 chrXV:621264-621846 9.45e-01 100 chrVIII:75731-76003 6.45e-01 100 chrXII:704146-704654 3.03e-01 100 chrIV:338197-338633 4.52e-01 100 chrXV:839029-839465 8.67e-01 100 chrXV:113576-113995 1.18e-05 67_[-2(5.96e-10)]_3 chrXII:363196-363414 6.21e-01 100 chrVII:823285-823692 2.34e-06 44_[-2(4.07e-10)]_26 chrXIV:229651-230167 7.64e-01 100 chrVIII:34341-35278 5.20e-01 100 chrIV:509537-509821 1.56e-01 100 chrIX:27-274 6.85e-01 100 chrV:147067-147503 9.48e-01 100 chrVI:31867-32277 3.28e-01 100 chrIX:259663-260099 9.97e-01 100 chrIV:1489973-1490478 8.86e-01 100 chrI:142791-143671 6.24e-01 100 chrIV:1345177-1345781 5.74e-01 100 chrXII:592372-592817 2.71e-07 44_[+2(5.96e-10)]_26 chrV:51813-52744 6.20e-01 100 chrII:89662-89931 1.25e-03 53_[+3(1.46e-07)]_26 chrII:554727-555009 8.71e-01 100 chrXIV:759408-759911 8.22e-01 100 chrV:435609-436012 3.96e-05 33_[+2(1.52e-07)]_37 chrIV:1270401-1270837 7.86e-01 100 chrX:538345-538445 5.33e-04 55_[-2(4.81e-07)]_15 chrXII:950445-951412 6.43e-01 100 chrIX:257370-257783 9.70e-01 100 chrXII:258628-259064 4.27e-01 100 chrIX:338746-339128 5.04e-02 100 chrX:607871-607971 3.02e-04 34_[-3(3.27e-08)]_45 chrXII:368306-368516 7.56e-01 100 chrXII:1018999-1019355 5.16e-01 100 chrIII:11072-11480 1.22e-01 100 chrIV:1086973-1087376 6.40e-01 100 chrVII:277634-278070 1.80e-01 100 chrXVI:73903-74339 8.98e-01 100 chrXVI:770616-771063 3.05e-01 100 chrIV:556270-556668 4.03e-02 60_[+3(1.37e-05)]_19 chrXII:721729-721849 9.76e-01 100 chrXV:1028630-1029128 1.03e-04 76_[+3(2.74e-08)]_3 chrII:606821-606941 9.90e-01 100 chrXV:727901-728337 9.71e-01 100 chrVIII:132854-133370 2.88e-05 14_[+2(4.30e-09)]_56 chrIV:1507229-1507629 3.75e-01 100 chrV:11817-12253 5.42e-01 100 chrIV:356478-356735 3.79e-01 100 chrXIII:759004-759440 7.24e-02 31_[-1(8.58e-05)]_40 chrXII:793726-795197 9.23e-01 100 chrV:354698-355336 3.02e-11 1_[-1(9.40e-13)]_30_[+3(8.28e-06)]_\ 19 chrXII:930830-931086 5.99e-02 14_[-2(8.56e-05)]_56 chrIV:1300947-1301314 2.24e-03 21_[-3(1.55e-06)]_1_[+3(3.41e-05)]_\ 36 chrX:223925-224025 8.87e-01 100 chrXI:665917-666335 1.02e-04 55_[+2(1.33e-08)]_15 chrVIII:48134-48649 7.30e-01 100 chrV:434360-434795 2.49e-05 21_[+1(2.49e-08)]_50 chrX:265387-265487 2.62e-03 57_[+3(3.75e-06)]_22 chrXV:83175-83448 2.65e-01 100 chrXII:730350-730542 5.72e-01 100 chrX:519275-519375 3.27e-01 100 chrXV:670977-671521 1.12e-01 100 chrXV:908781-909185 6.69e-01 100 chrXIII:540130-541041 2.28e-01 100 chrXV:300864-301413 9.37e-06 9_[-2(7.28e-09)]_61 chrXV:110784-111229 1.63e-10 13_[+1(4.22e-10)]_4_[+2(3.41e-07)]_\ 24 chrIV:358103-358410 2.55e-03 41_[+3(5.23e-07)]_38 chrIX:210484-210918 8.52e-18 14_[-2(1.78e-12)]_6_[-1(2.10e-13)]_\ 21 chrII:6159-6621 9.18e-06 10_[-2(2.59e-08)]_60 chrXII:781469-781839 2.73e-03 50_[+3(1.16e-06)]_29 chrXV:738734-738930 7.32e-01 100 chrXIII:26081-26583 3.10e-01 100 chrX:531635-531735 1.14e-07 27_[-1(1.37e-11)]_44 chrV:269144-269534 8.02e-01 100 chrI:406-780 1.06e-04 [-2(1.33e-08)]_70 chrI:202425-202870 6.95e-01 100 chrXIV:661322-661758 7.27e-01 100 chrVII:535548-535783 7.95e-01 100 chrIV:597240-597676 9.56e-01 100 chrXIII:661663-662062 2.42e-02 11_[+2(1.36e-05)]_59 chrXI:140761-141301 1.77e-08 44_[+1(9.40e-13)]_27 chrXIV:217177-217571 9.67e-01 100 chrXI:308018-308386 2.34e-06 34_[+2(4.07e-10)]_36 chrXV:977901-978441 6.04e-01 100 chrIV:884193-884610 1.69e-06 10_[-2(2.48e-09)]_60 chrX:703281-703381 3.18e-01 100 chrXVI:453407-453769 2.61e-01 100 chrXV:33390-33653 3.91e-01 100 chrXVI:775622-776018 9.89e-06 2_[+1(1.29e-08)]_69 chrXII:1018071-1018507 9.90e-02 100 chrXV:32-281 2.93e-01 100 chrV:66922-67309 4.37e-01 100 chrVII:148560-148887 4.00e-01 100 chrXVI:930631-931061 2.70e-01 100 chrXV:770096-770431 3.23e-01 100 chrVIII:401033-401304 5.35e-01 100 chrXII:712257-712477 5.08e-01 100 chrXVI:819307-819786 8.31e-18 33_[-2(1.78e-12)]_6_[-1(2.10e-13)]_\ 2 chrXV:161132-161386 1.83e-02 35_[+3(4.80e-06)]_16_[-3(5.79e-05)]_\ 7 chrII:415508-415862 3.10e-04 46_[+3(4.56e-08)]_33 chrXV:168003-168431 6.34e-03 19_[+3(1.41e-06)]_60 chrXI:43984-44420 6.84e-01 100 chrXI:379499-379917 1.49e-12 22_[-2(4.07e-10)]_6_[-1(8.10e-10)]_\ 13 chrVIII:388735-389187 2.15e-06 53_[+2(7.28e-09)]_17 chrIII:125041-125477 1.45e-02 35_[+3(3.75e-06)]_44 chrIV:1161509-1162000 8.85e-03 10_[-1(3.27e-05)]_61 chrIX:99638-100007 3.81e-03 36_[+3(2.23e-06)]_43 chrV:145551-145987 8.77e-01 100 chrII:256686-256926 6.14e-01 100 chrII:88041-88592 5.32e-01 100 chrIV:591655-592238 4.02e-01 100 chrVII:366096-366746 1.82e-01 100 chrXVI:55895-56521 4.18e-05 18_[+1(4.32e-09)]_53 chrXV:160367-160759 9.26e-01 100 chrXIII:501066-501502 3.64e-01 100 chrIV:1355723-1356004 8.10e-04 24_[+3(7.27e-08)]_3_[+3(2.13e-07)]_\ 31 chrVII:400100-400553 5.73e-01 100 chrVII:661549-661927 2.02e-01 100 chrV:207155-207610 2.49e-05 59_[-1(2.49e-08)]_12 chrVII:483211-483799 3.70e-04 22_[-1(1.31e-07)]_49 chrIX:131887-132050 1.30e-01 100 chrIV:1489067-1489733 9.11e-01 100 chrXVI:112245-112681 5.46e-01 100 chrVII:405290-405725 2.80e-11 13_[-2(4.81e-07)]_4_[-1(1.06e-11)]_\ 24 chrIV:308024-308378 2.55e-03 65_[-3(6.59e-06)]_14 chrVIII:5108-5606 8.08e-01 100 chrXII:953065-953383 9.75e-02 29_[-3(9.41e-05)]_50 chrXIII:532861-533297 7.23e-01 100 chrXV:438427-438956 8.39e-12 2_[-2(4.79e-09)]_28_[-1(5.10e-10)]_\ 11 chrIV:229513-229775 8.86e-04 28_[-3(1.41e-06)]_3_[-3(1.28e-07)]_\ 27 chrXVI:645216-645869 5.39e-01 100 chrX:419699-419799 8.66e-01 100 chrVI:83853-84337 5.95e-02 100 chrVIII:7663-8099 8.53e-01 100 chrVII:438598-438892 2.96e-03 61_[+3(6.43e-07)]_18 chrXII:855971-856464 4.28e-02 100 chrVII:799118-799554 4.27e-02 100 chrXIV:621079-621515 9.71e-01 100 chrXV:115622-116058 7.67e-01 100 chrXI:103964-104400 3.54e-01 100 chrV:492176-492600 4.03e-11 21_[+1(7.40e-10)]_5_[+2(8.93e-09)]_\ 15 chrXII:125171-125387 8.50e-01 100 chrXII:189958-190394 7.64e-01 100 chrIV:915738-915858 2.50e-01 100 chrXII:1040954-1041390 7.47e-01 100 chrV:6158-6557 1.18e-03 34_[-3(1.46e-07)]_45 chrII:408568-409082 2.44e-01 100 chrXII:687635-688142 1.49e-12 28_[+1(8.10e-10)]_6_[+2(4.07e-10)]_\ 7 chrXV:638848-639212 6.56e-02 100 chrIV:1362257-1362691 4.75e-01 100 chrXV:444791-446170 7.03e-02 100 chrX:354065-354165 3.46e-06 [-2(5.98e-05)]_21_[-1(1.80e-08)]_20 chrIV:472731-473167 9.60e-01 100 chrVI:162036-162412 1.71e-04 54_[-2(1.64e-07)]_16 chrVIII:148952-149267 6.45e-03 21_[+3(1.47e-05)]_58 chrXV:520496-521035 8.59e-02 100 chrXVI:821798-822371 4.40e-01 100 chrII:393400-393561 9.59e-01 100 chrXII:374169-374709 8.28e-06 1_[-1(7.40e-10)]_70 chrXII:695969-696405 2.11e-01 100 chrII:414846-415061 2.93e-01 100 chrXIII:265886-266322 5.20e-01 100 chrXV:988270-988633 1.36e-01 100 chrVII:989720-990509 7.87e-01 100 chrXVI:209911-210464 9.52e-09 62_[+1(9.40e-13)]_9 chrI:20601-21285 2.40e-01 100 chrVII:857242-857664 1.70e-06 57_[+2(5.25e-10)]_13 chrXIV:104618-105161 3.58e-07 1_[-1(5.18e-11)]_70 chrXI:490769-491146 8.37e-05 61_[-2(8.93e-09)]_9 chrIV:1075314-1075719 2.01e-08 13_[+1(4.64e-10)]_5_[+2(7.64e-06)]_\ 23 chrXIII:760218-760654 5.64e-01 100 chrIV:1013726-1013942 6.73e-03 58_[-3(6.84e-05)]_21 chrXV:606251-606491 8.45e-01 100 chrXIII:733116-733513 5.38e-01 100 chrXIII:163098-163847 9.34e-01 100 chrV:401740-402176 2.74e-01 100 chrXV:1004342-1005041 9.86e-01 100 chrIV:1492283-1492719 7.92e-01 100 chrIV:1270066-1270502 4.18e-02 100 chrXVI:678761-679424 4.26e-02 100 chrV:267573-267730 2.43e-01 100 chrXVI:785684-785929 3.87e-01 100 chrXII:815585-816021 7.29e-01 100 chrIV:1157029-1157465 9.75e-01 100 chrVIII:382931-383340 6.89e-05 14_[+3(1.46e-07)]_65 chrV:551143-551532 3.65e-18 5_[+1(2.10e-13)]_6_[+2(1.78e-12)]_\ 30 chrVI:131272-131591 7.03e-01 100 chrXV:353860-354296 3.06e-13 20_[+1(5.18e-11)]_5_[+2(5.96e-10)]_\ 16 chrXIV:63127-63604 3.47e-03 1_[+3(6.43e-07)]_78 chrXI:230849-231726 1.31e-02 100 chrXIII:653531-653902 7.96e-01 100 chrIV:322393-322691 7.87e-01 100 chrII:164968-165660 3.31e-02 100 chrX:227706-227806 2.44e-01 100 chrXIII:223364-223800 9.81e-01 100 chrII:555721-556265 6.13e-01 100 chrVII:29-195 4.10e-01 100 chrXV:348050-348486 6.96e-01 100 chrXIV:567912-568427 7.66e-08 61_[-1(6.50e-11)]_10 chrX:541315-541415 9.31e-07 65_[-1(1.50e-09)]_6 chrXV:624094-624599 9.40e-01 100 chrIII:30-545 7.70e-05 4_[-3(3.03e-07)]_15_[-3(2.74e-08)]_\ 6_[-3(3.03e-07)]_12 chrXV:841796-842068 2.70e-01 100 chrVIII:296834-297221 2.00e-03 72_[-3(1.11e-05)]_7 chrXIII:914952-915722 4.36e-01 100 chrII:82173-82609 2.05e-02 42_[-3(1.28e-05)]_37 chrII:405681-406164 2.80e-11 6_[-2(4.81e-07)]_4_[-1(1.06e-11)]_\ 31 chrXIII:504706-505222 3.72e-01 100 chrVIII:466774-467218 1.53e-01 100 chrXV:79774-80113 2.18e-04 53_[+3(1.88e-07)]_26 chrIII:142615-142970 2.63e-01 100 chrVII:374-763 7.01e-05 5_[-2(1.33e-08)]_65 chrIX:257370-257821 9.70e-01 100 chrIV:1239799-1240040 4.26e-01 100 chrXV:85068-85504 9.85e-01 100 chrX:197177-197277 2.89e-09 13_[+2(1.91e-13)]_57 chrXII:602623-602787 8.97e-01 100 chrXV:839254-839690 4.33e-01 100 chrX:121525-121625 5.85e-01 100 chrXIV:65301-65452 8.41e-01 100 chrV:29508-29674 2.28e-01 100 chrXIV:426818-427277 4.00e-02 20_[-3(8.92e-06)]_59 chrVIII:237685-238169 2.14e-04 31_[+2(6.80e-08)]_39 chrXIII:626403-626967 9.80e-01 100 chrXI:67757-68532 6.07e-01 100 chrVII:919773-920207 8.43e-01 100 chrXIII:887595-887996 1.12e-01 100 chrXVI:406167-406552 1.85e-03 54_[-3(1.70e-06)]_25 chrIV:386431-387521 5.07e-01 100 chrVII:827000-827163 5.44e-01 100 chrXII:257755-257988 8.27e-03 56_[-3(1.16e-06)]_23 chrXV:87645-88081 8.63e-01 100 chrII:167249-167492 1.96e-01 100 chrX:204508-204608 1.09e-01 100 chrXV:159271-160289 1.33e-01 100 chrIV:1237972-1238392 5.91e-01 100 chrXII:808886-809671 7.53e-01 100 chrVII:609452-610155 2.50e-01 100 chrVII:774153-774596 1.02e-15 25_[-2(1.91e-13)]_5_[-1(4.64e-10)]_\ 11 chrVII:559429-559581 6.28e-01 100 chrXII:426963-427302 6.88e-02 100 chrXIII:754413-754794 8.21e-03 17_[+3(1.55e-06)]_62 chrXII:645958-646265 3.94e-01 100 chrVII:364959-365456 1.87e-01 100 chrIV:322925-323605 8.52e-01 100 chrIV:117144-117568 3.50e-03 72_[-3(1.86e-06)]_7 chrXII:796958-797379 2.82e-01 100 chrIII:122147-122583 4.15e-01 100 chrXVI:172896-174115 9.93e-01 100 chrXIII:145898-146273 3.12e-04 41_[-3(8.70e-07)]_9_[-3(6.10e-06)]_\ 8 chrII:697529-697865 1.77e-01 100 chrXV:305213-305372 7.42e-01 100 chrXIV:739251-739714 5.94e-01 100 chrX:90080-90180 5.26e-01 100 chrVII:766038-766583 2.96e-04 66_[+2(3.41e-07)]_4 chrXVI:577296-577432 5.90e-01 100 chrXIV:25259-25695 7.58e-01 100 chrX:523809-523909 4.93e-06 68_[+2(4.30e-09)]_2 chrXVI:404814-405762 6.72e-01 100 chrXIV:619763-620013 6.87e-01 100 chrVII:318701-319137 4.92e-01 100 chrIV:1175643-1176150 5.75e-05 18_[-1(1.47e-08)]_53 chrIII:292656-292979 6.39e-01 100 chrIX:427115-427891 6.66e-01 100 chrXV:678010-678281 9.83e-01 100 chrVI:5065-5497 1.40e-05 41_[-2(1.33e-08)]_29 chrV:250101-250549 1.29e-11 11_[-2(2.76e-07)]_4_[-1(2.26e-11)]_\ 26 chrIV:1359370-1359791 7.59e-04 58_[-3(9.71e-08)]_21 chrV:424598-425271 8.26e-01 100 chrVII:413304-413738 5.82e-01 100 chrVIII:556643-557208 1.15e-03 13_[+3(3.03e-07)]_26_[+3(1.46e-07)]_\ 19 chrVIII:85207-85550 2.38e-06 12_[+2(4.07e-10)]_58 chrVII:738881-739353 1.10e-08 55_[-2(1.78e-12)]_15 chrXIII:362877-363347 2.49e-05 36_[-1(2.49e-08)]_35 chrV:305626-306187 9.79e-01 100 chrV:140073-140875 6.60e-01 100 chrXVI:331740-332176 8.46e-01 100 chrXIII:552159-552328 5.43e-01 100 chrX:391778-391878 7.63e-04 60_[-3(3.75e-06)]_19 chrXIII:751350-751504 3.80e-02 100 chrXV:24483-25023 2.55e-01 100 chrXI:158226-158587 5.60e-02 36_[-3(4.34e-05)]_43 chrXII:728083-728692 3.11e-02 100 chrIV:465080-465598 5.57e-01 100 chrIV:231792-232228 6.54e-01 100 chrV:268070-268270 6.97e-01 100 chrXII:691375-691572 9.10e-01 100 chrXI:614817-615267 2.44e-02 100 chrVIII:125916-126296 4.37e-04 38_[-3(3.87e-08)]_41 chrV:135204-135686 1.28e-08 37_[+1(1.37e-11)]_34 chrIX:68207-68517 3.25e-04 30_[-3(1.66e-07)]_49 chrIV:324329-324765 9.87e-01 100 chrVIII:16949-17741 9.17e-01 100 chrIX:135444-135880 4.74e-01 100 chrXV:854028-854443 4.84e-16 9_[+1(1.74e-12)]_5_[+2(2.35e-11)]_\ 27 chrXIII:892701-892885 2.13e-01 100 chrXIII:288286-288722 1.71e-03 9_[+3(5.23e-07)]_70 chrXIII:224080-224369 1.50e-04 14_[+3(2.29e-08)]_4_[+3(2.34e-05)]_\ 40 chrXVI:114317-114782 6.65e-02 100 chrXII:712932-713548 8.91e-01 100 chrXI:162275-162746 2.80e-11 34_[+1(1.06e-11)]_4_[+2(4.81e-07)]_\ 3 chrVI:19399-19889 6.45e-01 100 chrI:29-226 1.92e-03 66_[+2(3.82e-06)]_4 chrIII:163383-164025 1.08e-06 21_[+3(4.08e-06)]_13_[+2(7.12e-07)]_\ 15 chrXIV:234204-234543 9.77e-01 100 chrXII:1003992-1004428 4.16e-01 100 chrXIII:296783-298882 3.44e-02 21_[-3(7.62e-05)]_58 chrXII:241574-242001 9.14e-06 62_[-3(6.90e-09)]_17 chrXVI:516395-516549 7.98e-01 100 chrXII:949464-949923 8.08e-01 100 chrXIV:662323-662514 9.34e-02 100 chrXII:737738-738092 2.59e-01 100 chrVI:223924-224199 1.14e-03 44_[+3(3.79e-07)]_35 chrI:14746-15071 4.95e-01 100 chrVIII:505831-506184 7.89e-05 42_[+3(5.50e-09)]_37 chrVII:544417-544847 9.31e-07 2_[+1(1.50e-09)]_69 chrV:303084-303431 7.08e-01 100 chrV:311825-312301 4.84e-16 17_[+1(1.74e-12)]_5_[+2(2.35e-11)]_\ 19 chrXV:866577-866917 1.92e-03 33_[-3(1.19e-05)]_3_[+3(7.68e-06)]_\ 22 chrXV:900036-900361 8.83e-01 100 chrV:152472-153328 7.52e-01 100 chrV:77458-78167 7.84e-01 100 chrVIII:562252-562633 2.62e-04 72_[+3(1.46e-07)]_7 chrII:140417-140831 1.92e-01 100 chrXI:146850-147301 6.56e-01 100 chrIII:292799-293235 2.89e-01 100 chrIII:228512-229222 2.54e-01 100 chrVII:958553-958989 5.28e-01 100 chrV:139374-139810 8.05e-02 24_[+1(4.51e-05)]_47 chrX:22729-22829 8.54e-01 100 chrXIII:408181-408872 3.47e-01 100 chrVIII:553433-553604 9.52e-01 100 chrVII:986755-987804 1.66e-01 100 chrIV:1468192-1468466 5.08e-01 100 chrIV:339002-339438 9.53e-01 100 chrII:798741-799186 9.66e-01 100 chrXI:431318-431656 2.69e-04 49_[-3(2.29e-08)]_30 chrIII:137729-138165 4.51e-01 100 chrXI:517227-517522 9.55e-01 100 chrIII:124504-124631 2.82e-01 100 chrXIII:5307-5807 5.44e-04 60_[-3(1.28e-07)]_19 chrXI:617679-618041 9.67e-01 100 chrIX:325555-325988 3.22e-13 27_[-2(5.96e-10)]_5_[-1(5.18e-11)]_\ 9 chrXIV:499323-499645 9.43e-01 100 chrXV:232105-232359 2.28e-01 100 chrXI:284345-284824 7.56e-01 100 chrXIII:430974-431410 6.13e-01 100 chrIV:722175-722845 3.92e-01 100 chrXVI:810454-810902 5.03e-06 48_[-2(1.76e-09)]_22 chrVII:930810-931225 2.45e-04 25_[+2(1.64e-07)]_45 chrXIV:783850-784187 6.16e-04 67_[+3(1.66e-07)]_12 chrXII:791662-792098 9.08e-01 100 chrXIV:631717-632108 5.09e-05 24_[+2(1.20e-07)]_46 chrXV:989062-989604 2.23e-02 100 chrXI:618836-619198 1.14e-03 8_[-3(2.66e-05)]_13_[+3(4.43e-06)]_\ 37 chrVII:254128-254538 8.69e-04 37_[-3(1.88e-07)]_4_[+3(8.92e-06)]_\ 17 chrXIII:630052-630488 4.92e-02 24_[+3(1.47e-05)]_55 chrIV:1201516-1202002 5.02e-04 41_[-2(1.52e-07)]_29 chrVII:783857-784157 9.39e-01 100 chrXV:505085-505485 7.08e-04 51_[-3(2.66e-06)]_4_[-3(7.12e-07)]_\ 3 chrXI:27-242 1.42e-05 59_[+2(1.56e-06)]_11 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************