******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SFL1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:58898-58998 1.0000 100 chrII:394690-395375 1.0000 100 chrVIII:549387-549911 1.0000 100 chrXII:214802-215107 1.0000 100 chrIV:507970-508187 1.0000 100 chrI:141576-141985 1.0000 100 chrXII:962970-963321 1.0000 100 chrVIII:34360-35461 1.0000 100 chrII:371625-372149 1.0000 100 chrXI:326137-327199 1.0000 100 chrXII:201734-202117 1.0000 100 chrIII:197392-197916 1.0000 100 chrVIII:237656-238150 1.0000 100 chrXVI:214870-215173 1.0000 100 chrIV:579327-580162 1.0000 100 chrXII:818432-818797 1.0000 100 chrXIII:915059-915260 1.0000 100 chrXV:624073-624737 1.0000 100 chrXVI:277754-277941 1.0000 100 chrXVI:768954-769468 1.0000 100 chrIV:720655-720988 1.0000 100 chrXVI:210058-210463 1.0000 100 chrV:77543-77909 1.0000 100 chrV:100205-100448 1.0000 100 chrIV:1239796-1240320 1.0000 100 chrXV:671050-671462 1.0000 100 chrII:417493-418017 1.0000 100 chrXV:723399-723923 1.0000 100 chrXIV:415391-416052 1.0000 100 chrX:222906-223006 1.0000 100 chrV:68639-69163 1.0000 100 chrXVI:581918-582260 1.0000 100 chrIV:589760-590284 1.0000 100 chrXV:779774-780948 1.0000 100 chrVII:828530-828992 1.0000 100 chrII:256656-257146 1.0000 100 chrIV:1345343-1345722 1.0000 100 chrXVI:154133-154311 1.0000 100 chrXIII:296909-298875 1.0000 100 chrXI:218369-218574 1.0000 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chrXI:140837-141297 1.0000 100 chrVI:137286-137689 1.0000 100 chrIV:541192-541845 1.0000 100 chrXII:0-392 1.0000 100 chrXVI:582162-582410 1.0000 100 chrVII:876221-876706 1.0000 100 chrIV:488566-489087 1.0000 100 chrXVI:812857-813381 1.0000 100 chrII:301185-301547 1.0000 100 chrIV:556331-556670 1.0000 100 chrXV:729732-730256 1.0000 100 chrII:143326-143850 1.0000 100 chrXV:384757-385074 1.0000 100 chrIX:427098-427570 1.0000 100 chrVIII:455662-455965 1.0000 100 chrVIII:562355-562577 1.0000 100 chrXIII:923612-923778 1.0000 100 chrVII:25361-25706 1.0000 100 chrX:608382-608482 1.0000 100 chrXII:737660-738184 1.0000 100 chrXIII:507287-507419 1.0000 100 chrII:393607-394131 1.0000 100 chrXI:578848-579251 1.0000 100 chrIV:505358-505882 1.0000 100 chrXIII:665374-665898 1.0000 100 chrXVI:804513-804653 1.0000 100 chrIV:465164-465526 1.0000 100 chrXV:980457-981013 1.0000 100 chrIX:256587-257111 1.0000 100 chrXV:788579-789103 1.0000 100 chrVII:920885-921057 1.0000 100 chrVII:287239-287663 1.0000 100 chrIV:1080638-1080866 1.0000 100 chrVI:162043-162399 1.0000 100 chrXII:708140-708456 1.0000 100 chrIV:1013025-1013401 1.0000 100 chrIV:520760-521141 1.0000 100 chrII:443470-443994 1.0000 100 chrXI:552264-552475 1.0000 100 chrVIII:361866-362390 1.0000 100 chrXII:734636-735067 1.0000 100 chrX:349040-349140 1.0000 100 chrXII:369222-370307 1.0000 100 chrXVI:810410-810937 1.0000 100 chrXV:911531-911812 1.0000 100 chrV:79405-79671 1.0000 100 chrVII:738911-739290 1.0000 100 chrXIV:628653-629020 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SFL1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SFL1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SFL1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 562 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 56200 N= 562 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.328 C 0.172 G 0.172 T 0.328 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SFL1/background): A 0.325 C 0.175 G 0.175 T 0.325 ******************************************************************************** ******************************************************************************** MOTIF AGSBYNYDTGGCSYAGTKGKWWR MEME-1 width = 23 sites = 58 llr = 957 E-value = 9.7e-150 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGSBYNYDTGGCSYAGTKGKWWR MEME-1 Description -------------------------------------------------------------------------------- Simplified A 6:1:1312:1:::1a2::::365 pos.-specific C 1:53525::::855:::2:1::2 probability G 19431214:9a:31:8:4a6114 matrix T 2::43334a::223::a3:363: bits 2.5 * * 2.3 * * 2.0 * * * 1.8 * ** * Relative 1.5 * **** *** * Entropy 1.3 * **** *** * (23.8 bits) 1.0 ** **** *** * 0.8 ** ***** *** ** * 0.5 **** ************* * 0.3 ***** ***************** 0.0 ----------------------- Multilevel AGCTCTCTTGGCCCAGTGGGTAA consensus T GCTATG TGT A T TATG sequence G C A T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGSBYNYDTGGCSYAGTKGKWWR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------- chrXII:214802-215107 - 30 9.23e-12 TACGCGTTTT AGGGCACATGGCGCAGTTGGTAG CGCGCTTCCC chrVII:738911-739290 + 71 1.39e-11 CGAAAAAAAT AGGTCTCTTGGCCCAGTTGGTTA AGGCACC chrV:551268-551496 - 5 1.39e-11 CACAGATTAC AGGTCTCTTGGCCCAGTTGGTTA AGGC chrVII:794213-794646 + 37 5.52e-11 CCATAGATTG CGGGCACATGGCGCAGTTGGTAG CGCGCTTCCC chrV:311921-312251 - 38 5.52e-11 ACAGAAATTC TGGGCACATGGCGCAGTTGGTAG CGCGCTTCCC chrXIV:569653-570177 - 54 7.87e-11 CAGATAACAG TGGTCTCTTGGCCCAGTTGGTTA AGGCACCGTG chrXVI:819234-819784 + 69 7.87e-11 AACAATAGAA TGGTCTCTTGGCCCAGTTGGTTA AGGCACCGT chrIX:210466-210945 + 9 7.87e-11 GAAATATC TGGTCTCTTGGCCCAGTTGGTTA AGGCACCGTG chrXVI:856697-857070 + 68 1.56e-10 CAACAAGATT CGGGCGTGTGGCGTAGTCGGTAG CGCGCTCCCT chrXI:46549-46983 - 69 8.30e-10 AAATTACTC AGCCCTTTTGGCCAAGTGGTAAG GCATCGCACT chrIV:1352321-1352731 - 41 1.85e-09 CCAACGAAAT AGCCTTGTTGGCGCAATCGGTAG CGCGTATGAC chrV:435653-436042 - 6 1.85e-09 CAACAATAAG AGCCTTGTTGGCGCAATCGGTAG CGCGT chrX:414808-414908 + 15 1.85e-09 TCAACGAATT AGCCTTGTTGGCGCAATCGGTAG CGCGTATGAC chrVII:185577-185953 - 50 1.85e-09 TCAACGAAAT AGCCTTGTTGGCGCAATCGGTAG CGCGTATGAC chrIV:1201496-1202009 + 47 1.85e-09 ACAAATAAAT AGCCTTGTTGGCGCAATCGGTAG CGCGTATGAC chrXVI:581918-582260 + 22 1.85e-09 TCAACAAAAG AGCCTTGTTGGCGCAATCGGTAG CGCGTATGAC chrII:226877-227344 + 14 2.39e-09 ATGTAAAACG AGGCAACTTGGCCGAGTGGTTAA GGCGAAAGAT chrIV:437553-437945 + 72 2.39e-09 ATCATTAGTA AGGCAACTTGGCCGAGTGGTTAA GGCGAA chrXIII:195888-196416 - 47 2.70e-09 CAAGTTCACA AGGGCGTGTGGTCTAGTGGTATG ATTCTCGCTT chrXII:687675-688140 - 54 3.05e-09 CATAAATAAT AGGTTTCGTGGTCTAGTCGGTTA TGGCATCTGC chrV:438514-438897 + 44 3.05e-09 TCAACAAATT AGGTTTCGTGGTCTAGTCGGTTA TGGCATCTGC chrVIII:116015-116373 - 14 3.45e-09 TCACTATTAG AGCTTCTATGGCCAAGTTGGTAA GGCGCCACAC chrXV:113591-114050 + 31 3.45e-09 TCAGAGATTT AGCTTCTATGGCCAAGTTGGTAA GGCGCCACAC chrII:405690-406142 + 11 5.49e-09 AACAAATAGT AGCTCGCGTGGCGTAATGGCAAC GCGTCTGACT chrII:405690-406154 + 5 5.49e-09 TAGT AGCTCGCGTGGCGTAATGGCAAC GCGTCTGACT chrIV:568674-569054 + 67 5.49e-09 GACAAATAGT AGCTCGCGTGGCGTAATGGCAAC GCGTCTGACT chrX:374398-374498 - 30 5.49e-09 AACAAATAGT AGCTCGCGTGGCGTAATGGCAAC GCGTCTGACT chrVII:828530-828992 - 62 5.49e-09 AACAAACAGT AGCTCGCGTGGCGTAATGGCAAC GCGTCTGACT chrXVI:775634-776001 - 48 6.88e-09 ATAATTCAAA AGCTCGTATGGCGCAGTGGTAGC GCAGCAGATT chrVIII:132877-133379 - 8 6.88e-09 ATATAATAAG TGGCAACTTGGCCGAGTGGTTAA GGCGAAA chrIV:884144-884544 + 66 7.67e-09 CTTTCGAAAA TGCTCGTGTAGCTCAGTGGTTAG AGCTTCGTGC chrVIII:388795-389188 - 33 7.67e-09 AACAGATACA TGGGCGTGTGGTCTAGTGGTATG ATTCTCGCTT chrXV:300892-301267 + 67 7.67e-09 CAGAAAAGAT CGGGCGTGTGGTCTAGTGGTATG ATTCTCGCTT chrVII:73642-74158 - 31 8.55e-09 TTCAATTAAG TGGTTTCGTGGTCTAGTCGGTTA TGGCATCTGC chrVIII:85200-85584 - 8 8.55e-09 AATAAGAATT TGGTTTCGTGGTCTAGTCGGTTA TGGCATC chrXIV:102543-102972 + 8 1.94e-08 TATTATA AGACTCCATGGCCAAGTTGGTTA AGGCGTGCGA chrIV:1095242-1095626 - 56 1.94e-08 GTCTTATGTT AGCGGACTTAGCTCAGTTGGGAG AGCGCCAGAC chrXII:975839-976277 - 27 1.94e-08 CGGAAATAAA AGACTCCATGGCCAAGTTGGTTA AGGCGTGCGA chrX:617714-617814 + 54 2.59e-08 CAACAAACAA TGGGAGTTTGGCCGAGTGGTTTA AGGCGTCAGA chrVI:162043-162399 + 56 3.42e-08 CAAGAAAACA AGCGCAAGTGGTTTAGTGGTAAA ATCCAACGTT chrIII:142548-142979 - 37 3.42e-08 CAAGATTACT AGCGCAAGTGGTTTAGTGGTAAA ATCCAACGTT chrXVI:860206-860531 + 60 3.42e-08 GTAAATAACA AGCGCAAGTGGTTTAGTGGTAAA ATCCAACGTT chrXVI:810410-810937 + 52 4.48e-08 TCATTATTTG CGACTCCATGGCCAAGTTGGTTA AGGCGTGCGA chrIII:127553-127893 + 42 4.48e-08 CAAGATAAAA TGACTCCATGGCCAAGTTGGTTA AGGCGTGCGA chrXVI:689336-689793 + 50 4.89e-08 AGATTATTTT GGGCACTATGGCCGAGTGGTTAA GGCGACAGAC chrII:36263-36528 + 52 5.33e-08 ATTAGTTGTA AGCGGATTTAGCTCAGTTGGGAG AGCGCCAGAC chrVI:157745-158202 - 63 5.33e-08 CATAAATAGA AGCGGATTTAGCTCAGTTGGGAG AGCGCCAGAC chrVIII:237656-238150 - 65 5.33e-08 ACAAATAGTA AGCGGATTTAGCTCAGTTGGGAG AGCGCCAGAC chrIV:488566-489087 - 73 7.46e-08 GTTTC CGGTCCAATGGTCCAGTGGTTCA AGACGTCGCC chrXVI:572057-572481 + 49 7.46e-08 CACAATACTT CGCGCAAGTGGTTTAGTGGTAAA ATCCAACGTT chrVII:440389-441258 - 13 1.11e-07 ATAAAATATA TGCGGATTTAGCTCAGTTGGGAG AGCGCCAGAC chrII:326680-327070 - 19 1.40e-07 ATCGAGTTCC GGGTCCAATGGTCCAGTGGTTCA AGACGTCGCC chrX:517666-517766 - 51 3.75e-07 CATAAAAGTT AAGCGCCGTGGCGCAGTGGAAGC GCGCAGGGCT chrVII:115303-115728 + 22 4.00e-07 CGAAGAACTC ATCCTTGTTAGCTCAGTTGGTAG AGCGTTCGGC chrX:422720-422820 + 37 4.84e-07 ATCCTTTGTA TGCTTCAGTAGCTCAGTAGGAAG AGCGTCAGTC chrXVI:338739-339077 - 40 6.57e-07 CATGATTTAG CAGCGCCGTGGCGCAGTGGAAGC GCGCAGGGCT chrX:538362-538462 + 64 9.31e-07 CAACCAAGTT GGTTCCGTTGGCGTAATGGTAAC GCGTCTCCCT chrVII:422886-423360 + 18 1.04e-06 AACAGATAAG TGGTTGTTTGGCCGAGCGGTCTA AGGCGCCTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGSBYNYDTGGCSYAGTKGKWWR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:214802-215107 9.2e-12 29_[-1]_48 chrVII:738911-739290 1.4e-11 70_[+1]_7 chrV:551268-551496 1.4e-11 4_[-1]_73 chrVII:794213-794646 5.5e-11 36_[+1]_41 chrV:311921-312251 5.5e-11 37_[-1]_40 chrXIV:569653-570177 7.9e-11 53_[-1]_24 chrXVI:819234-819784 7.9e-11 68_[+1]_9 chrIX:210466-210945 7.9e-11 8_[+1]_69 chrXVI:856697-857070 1.6e-10 67_[+1]_10 chrXI:46549-46983 8.3e-10 68_[-1]_9 chrIV:1352321-1352731 1.9e-09 40_[-1]_37 chrV:435653-436042 1.9e-09 5_[-1]_72 chrX:414808-414908 1.9e-09 14_[+1]_63 chrVII:185577-185953 1.9e-09 49_[-1]_28 chrIV:1201496-1202009 1.9e-09 46_[+1]_31 chrXVI:581918-582260 1.9e-09 21_[+1]_56 chrII:226877-227344 2.4e-09 13_[+1]_64 chrIV:437553-437945 2.4e-09 71_[+1]_6 chrXIII:195888-196416 2.7e-09 46_[-1]_31 chrXII:687675-688140 3.1e-09 53_[-1]_24 chrV:438514-438897 3.1e-09 43_[+1]_34 chrVIII:116015-116373 3.4e-09 13_[-1]_64 chrXV:113591-114050 3.4e-09 30_[+1]_47 chrII:405690-406142 5.5e-09 10_[+1]_67 chrII:405690-406154 5.5e-09 4_[+1]_73 chrIV:568674-569054 5.5e-09 66_[+1]_11 chrX:374398-374498 5.5e-09 29_[-1]_48 chrVII:828530-828992 5.5e-09 61_[-1]_16 chrXVI:775634-776001 6.9e-09 47_[-1]_30 chrVIII:132877-133379 6.9e-09 7_[-1]_70 chrIV:884144-884544 7.7e-09 65_[+1]_12 chrVIII:388795-389188 7.7e-09 32_[-1]_45 chrXV:300892-301267 7.7e-09 66_[+1]_11 chrVII:73642-74158 8.5e-09 30_[-1]_47 chrVIII:85200-85584 8.5e-09 7_[-1]_70 chrXIV:102543-102972 1.9e-08 7_[+1]_70 chrIV:1095242-1095626 1.9e-08 55_[-1]_22 chrXII:975839-976277 1.9e-08 26_[-1]_51 chrX:617714-617814 2.6e-08 53_[+1]_24 chrVI:162043-162399 3.4e-08 55_[+1]_22 chrIII:142548-142979 3.4e-08 36_[-1]_41 chrXVI:860206-860531 3.4e-08 59_[+1]_18 chrXVI:810410-810937 4.5e-08 51_[+1]_26 chrIII:127553-127893 4.5e-08 41_[+1]_36 chrXVI:689336-689793 4.9e-08 49_[+1]_28 chrII:36263-36528 5.3e-08 51_[+1]_26 chrVI:157745-158202 5.3e-08 62_[-1]_15 chrVIII:237656-238150 5.3e-08 64_[-1]_13 chrIV:488566-489087 7.5e-08 72_[-1]_5 chrXVI:572057-572481 7.5e-08 48_[+1]_29 chrVII:440389-441258 1.1e-07 12_[-1]_65 chrII:326680-327070 1.4e-07 18_[-1]_59 chrX:517666-517766 3.7e-07 50_[-1]_27 chrVII:115303-115728 4e-07 21_[+1]_56 chrX:422720-422820 4.8e-07 36_[+1]_41 chrXVI:338739-339077 6.6e-07 39_[-1]_38 chrX:538362-538462 9.3e-07 63_[+1]_14 chrVII:422886-423360 1e-06 17_[+1]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGSBYNYDTGGCSYAGTKGKWWR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGSBYNYDTGGCSYAGTKGKWWR width=23 seqs=58 chrXII:214802-215107 ( 30) AGGGCACATGGCGCAGTTGGTAG 1 chrVII:738911-739290 ( 71) AGGTCTCTTGGCCCAGTTGGTTA 1 chrV:551268-551496 ( 5) AGGTCTCTTGGCCCAGTTGGTTA 1 chrVII:794213-794646 ( 37) CGGGCACATGGCGCAGTTGGTAG 1 chrV:311921-312251 ( 38) TGGGCACATGGCGCAGTTGGTAG 1 chrXIV:569653-570177 ( 54) TGGTCTCTTGGCCCAGTTGGTTA 1 chrXVI:819234-819784 ( 69) TGGTCTCTTGGCCCAGTTGGTTA 1 chrIX:210466-210945 ( 9) TGGTCTCTTGGCCCAGTTGGTTA 1 chrXVI:856697-857070 ( 68) CGGGCGTGTGGCGTAGTCGGTAG 1 chrXI:46549-46983 ( 69) AGCCCTTTTGGCCAAGTGGTAAG 1 chrIV:1352321-1352731 ( 41) AGCCTTGTTGGCGCAATCGGTAG 1 chrV:435653-436042 ( 6) AGCCTTGTTGGCGCAATCGGTAG 1 chrX:414808-414908 ( 15) AGCCTTGTTGGCGCAATCGGTAG 1 chrVII:185577-185953 ( 50) AGCCTTGTTGGCGCAATCGGTAG 1 chrIV:1201496-1202009 ( 47) AGCCTTGTTGGCGCAATCGGTAG 1 chrXVI:581918-582260 ( 22) AGCCTTGTTGGCGCAATCGGTAG 1 chrII:226877-227344 ( 14) AGGCAACTTGGCCGAGTGGTTAA 1 chrIV:437553-437945 ( 72) AGGCAACTTGGCCGAGTGGTTAA 1 chrXIII:195888-196416 ( 47) AGGGCGTGTGGTCTAGTGGTATG 1 chrXII:687675-688140 ( 54) AGGTTTCGTGGTCTAGTCGGTTA 1 chrV:438514-438897 ( 44) AGGTTTCGTGGTCTAGTCGGTTA 1 chrVIII:116015-116373 ( 14) AGCTTCTATGGCCAAGTTGGTAA 1 chrXV:113591-114050 ( 31) AGCTTCTATGGCCAAGTTGGTAA 1 chrII:405690-406142 ( 11) AGCTCGCGTGGCGTAATGGCAAC 1 chrII:405690-406154 ( 5) AGCTCGCGTGGCGTAATGGCAAC 1 chrIV:568674-569054 ( 67) AGCTCGCGTGGCGTAATGGCAAC 1 chrX:374398-374498 ( 30) AGCTCGCGTGGCGTAATGGCAAC 1 chrVII:828530-828992 ( 62) AGCTCGCGTGGCGTAATGGCAAC 1 chrXVI:775634-776001 ( 48) AGCTCGTATGGCGCAGTGGTAGC 1 chrVIII:132877-133379 ( 8) TGGCAACTTGGCCGAGTGGTTAA 1 chrIV:884144-884544 ( 66) TGCTCGTGTAGCTCAGTGGTTAG 1 chrVIII:388795-389188 ( 33) TGGGCGTGTGGTCTAGTGGTATG 1 chrXV:300892-301267 ( 67) CGGGCGTGTGGTCTAGTGGTATG 1 chrVII:73642-74158 ( 31) TGGTTTCGTGGTCTAGTCGGTTA 1 chrVIII:85200-85584 ( 8) TGGTTTCGTGGTCTAGTCGGTTA 1 chrXIV:102543-102972 ( 8) AGACTCCATGGCCAAGTTGGTTA 1 chrIV:1095242-1095626 ( 56) AGCGGACTTAGCTCAGTTGGGAG 1 chrXII:975839-976277 ( 27) AGACTCCATGGCCAAGTTGGTTA 1 chrX:617714-617814 ( 54) TGGGAGTTTGGCCGAGTGGTTTA 1 chrVI:162043-162399 ( 56) AGCGCAAGTGGTTTAGTGGTAAA 1 chrIII:142548-142979 ( 37) AGCGCAAGTGGTTTAGTGGTAAA 1 chrXVI:860206-860531 ( 60) AGCGCAAGTGGTTTAGTGGTAAA 1 chrXVI:810410-810937 ( 52) CGACTCCATGGCCAAGTTGGTTA 1 chrIII:127553-127893 ( 42) TGACTCCATGGCCAAGTTGGTTA 1 chrXVI:689336-689793 ( 50) GGGCACTATGGCCGAGTGGTTAA 1 chrII:36263-36528 ( 52) AGCGGATTTAGCTCAGTTGGGAG 1 chrVI:157745-158202 ( 63) AGCGGATTTAGCTCAGTTGGGAG 1 chrVIII:237656-238150 ( 65) AGCGGATTTAGCTCAGTTGGGAG 1 chrIV:488566-489087 ( 73) CGGTCCAATGGTCCAGTGGTTCA 1 chrXVI:572057-572481 ( 49) CGCGCAAGTGGTTTAGTGGTAAA 1 chrVII:440389-441258 ( 13) TGCGGATTTAGCTCAGTTGGGAG 1 chrII:326680-327070 ( 19) GGGTCCAATGGTCCAGTGGTTCA 1 chrX:517666-517766 ( 51) AAGCGCCGTGGCGCAGTGGAAGC 1 chrVII:115303-115728 ( 22) ATCCTTGTTAGCTCAGTTGGTAG 1 chrX:422720-422820 ( 37) TGCTTCAGTAGCTCAGTAGGAAG 1 chrXVI:338739-339077 ( 40) CAGCGCCGTGGCGCAGTGGAAGC 1 chrX:538362-538462 ( 64) GGTTCCGTTGGCGTAATGGTAAC 1 chrVII:422886-423360 ( 18) TGGTTGTTTGGCCGAGCGGTCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGSBYNYDTGGCSYAGTKGKWWR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 23 n= 43836 bayes= 9.44507 E= 9.7e-150 85 -53 -175 -43 -324 -1250 244 -423 -224 141 136 -423 -1250 83 75 29 -192 141 -53 1 -33 36 36 -15 -143 141 -34 -24 -54 -1250 105 35 -1250 -1250 -1250 162 -124 -1250 230 -1250 -1250 -1250 252 -1250 -1250 215 -1250 -54 -1250 141 91 -65 -143 141 -75 -7 162 -1250 -1250 -1250 -65 -1250 218 -1250 -1250 -334 -1250 159 -423 12 136 8 -1250 -1250 252 -1250 -324 -102 166 1 -7 -334 -102 85 89 -234 -175 -7 52 -17 112 -1250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGSBYNYDTGGCSYAGTKGKWWR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 23 nsites= 58 E= 9.7e-150 0.586207 0.120690 0.051724 0.241379 0.034483 0.000000 0.948276 0.017241 0.068966 0.465517 0.448276 0.017241 0.000000 0.310345 0.293103 0.396552 0.086207 0.465517 0.120690 0.327586 0.258621 0.224138 0.224138 0.293103 0.120690 0.465517 0.137931 0.275862 0.224138 0.000000 0.362069 0.413793 0.000000 0.000000 0.000000 1.000000 0.137931 0.000000 0.862069 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.775862 0.000000 0.224138 0.000000 0.465517 0.327586 0.206897 0.120690 0.465517 0.103448 0.310345 1.000000 0.000000 0.000000 0.000000 0.206897 0.000000 0.793103 0.000000 0.000000 0.017241 0.000000 0.982759 0.017241 0.189655 0.448276 0.344828 0.000000 0.000000 1.000000 0.000000 0.034483 0.086207 0.551724 0.327586 0.310345 0.017241 0.086207 0.586207 0.603448 0.034483 0.051724 0.310345 0.465517 0.155172 0.379310 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGSBYNYDTGGCSYAGTKGKWWR MEME-1 regular expression -------------------------------------------------------------------------------- [AT]G[CG][TCG][CT][TACG][CT][TGA]TGG[CT][CGT][CT]A[GA]T[GT]G[GT][TA][AT][AG] -------------------------------------------------------------------------------- Time 309.16 secs. ******************************************************************************** ******************************************************************************** MOTIF RAGRTCMKGGGTTCGANYCCC MEME-2 width = 21 sites = 40 llr = 775 E-value = 1.0e-135 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAGRTCMKGGGTTCGANYCCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 47252:5::1::::3a2::1: pos.-specific C ::1:17413::::a::36a87 probability G 6375::1478a:::8:2:::3 matrix T ::1:83:5:1:aa:::34:1: bits 2.5 * * * 2.3 * * * 2.0 * * * 1.8 * * * Relative 1.5 * ******** *** Entropy 1.3 * ******** *** (27.9 bits) 1.0 **** * ******** **** 0.8 ******* ******** **** 0.5 **************** **** 0.3 **************** **** 0.0 --------------------- Multilevel GAGGTCATGGGTTCGATCCCC consensus AG AATCGC A CT G sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCMKGGGTTCGANYCCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrVII:876221-876706 + 23 1.38e-11 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrX:414808-414908 + 58 1.38e-11 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrVII:185577-185953 - 9 1.38e-11 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGG chrXVI:581918-582260 + 65 1.38e-11 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrXII:734636-735067 + 44 2.36e-11 TAATAACGCG GGGATCAGCGGTTCGATCCCG CTAGAGACCA chrXIV:569653-570177 - 12 2.36e-11 TAATAACGCG GGGATCAGCGGTTCGATCCCG CTAGAGACCA chrIX:210466-210945 + 53 2.36e-11 TAATAACGCG GGGATCAGCGGTTCGATCCCG CTAGAGACCA chrXVI:880081-880542 - 45 2.36e-11 TAATAACGCG GGGATCAGCGGTTCGATCCCG CTAGAGACCA chrVII:794213-794646 + 80 2.85e-11 TTGCAAGGAA GAGGTCATCGGTTCGATTCCG chrII:405690-406142 + 53 4.10e-11 TTCTAATCAG AAGATTATGGGTTCGACCCCC ATCGTGAGTG chrII:405690-406154 + 47 4.10e-11 TTCTAATCAG AAGATTATGGGTTCGACCCCC ATCGTGAGTG chrV:138464-139040 + 5 4.10e-11 TCAG AAGATTATGGGTTCGACCCCC ATCGTGAGTG chrVII:405350-405710 + 31 4.10e-11 TTCTAATCAG AAGATTATGGGTTCGACCCCC ATCGTGAGTG chrVII:828530-828992 - 22 4.10e-11 TTCTAATCAG AAGATTATGGGTTCGACCCCC ATCGTGAGTG chrXI:578848-579251 + 31 6.75e-11 AGGATACCGA AATGTCAGGGGTTCGAGCCCC CTATGAGGAG chrXVI:768954-769468 - 56 6.75e-11 AGGATACCGA AATGTCAGGGGTTCGAGCCCC CTATGAGGAG chrXI:140837-141297 - 11 8.01e-11 CTTTCACCGT GGAGACCGGGGTTCGACTCCC CGTATCGGAG chrIV:1016938-1017478 - 59 8.01e-11 TTCTCACCGT GGAGACCGGGGTTCGACTCCC CGCTTCGGAG chrVII:328355-328959 + 17 8.01e-11 CTTTCACCGT GGAGACCGGGGTTCGACTCCC CGTATCGGAG chrV:487158-487564 - 30 8.01e-11 CTTTCACCGT GGAGACCGGGGTTCGACTCCC CGTATCGGAG chrVII:401387-401786 - 1 8.01e-11 CTTTCACCGT GGAGACCGGGGTTCGACTCCC chrXV:980457-981013 + 72 2.34e-10 AAGCATGCGA GAGGCCCTGGGTTCAATTCCC AGCTCGCC chrXIV:567888-568474 + 56 2.34e-10 AAGCATGCGA GAGGCCCTGGGTTCAATTCCC AGCTCGCCCC chrXI:46549-46983 - 29 4.30e-10 TCGTAATGCG GGGATCGTGGGTTCAATTCCC ACAGAGGGCA chrXIV:560431-560990 - 43 8.92e-10 TAGTAATGTG GAGATCATCGGTTCAAATCCG ATTGGAAGCA chrXVI:559981-560485 - 25 8.92e-10 AAGTTATCTG GAGGTCCTGTGTTCGATCCAC AGAATTCGCA chrVI:157745-158202 - 3 8.92e-10 AAGTTATCTG GAGGTCCTGTGTTCGATCCAC AG chrXV:113591-114050 + 74 8.92e-10 TAGTAATGTG GAGATCATCGGTTCAAATCCG ATTGGA chrVIII:237656-238150 - 5 8.92e-10 AAGTTATCTG GAGGTCCTGTGTTCGATCCAC AGAA chrX:58898-58998 - 38 8.92e-10 TAGTAATGTG GAGATCATCGGTTCAAATCCG ATTGGAAGCA chrIV:488566-489087 - 31 4.64e-09 TTACACGGCG AAGATCCCGAGTTCGAACCTC GGTTGGATCA chrXII:448453-448959 - 4 5.07e-09 TTTTGATCCG GACAACCCCGGTTCGAATCCG GGT chrV:250119-250546 + 45 5.07e-09 TTTTGATCCG GACAACCCCGGTTCGAATCCG GGTAGGACCT chrVI:137286-137689 - 59 1.33e-08 TGTTAATCGC AAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrXIV:102543-102972 + 52 1.33e-08 TGTTAATCGC AAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrXII:687675-688140 - 12 2.72e-08 TAACACGCAG AACGTCCCCAGTTCGATCCTG GGCGAAATCA chrX:422720-422820 + 80 3.28e-08 TCATAATCTG AAGGTCGAGAGTTCGAACCTC chrX:517666-517766 - 11 8.05e-08 TCATAACCCT GATGTCCTCGGATCGAAACCG AGCGGCGCTA chrIX:324067-324521 - 69 1.14e-07 TTGTCGCGTG CCAGATCGGGGTTCAATTCCC CGTCGCGGAG chrIV:619791-620175 - 46 2.18e-07 TACGAACCAG AAGATTCCAGGTTCAAGTCCT GGCGGGGAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCMKGGGTTCGANYCCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:876221-876706 1.4e-11 22_[+2]_57 chrX:414808-414908 1.4e-11 57_[+2]_22 chrVII:185577-185953 1.4e-11 8_[-2]_71 chrXVI:581918-582260 1.4e-11 64_[+2]_15 chrXII:734636-735067 2.4e-11 43_[+2]_36 chrXIV:569653-570177 2.4e-11 11_[-2]_68 chrIX:210466-210945 2.4e-11 52_[+2]_27 chrXVI:880081-880542 2.4e-11 44_[-2]_35 chrVII:794213-794646 2.9e-11 79_[+2] chrII:405690-406142 4.1e-11 52_[+2]_27 chrII:405690-406154 4.1e-11 46_[+2]_33 chrV:138464-139040 4.1e-11 4_[+2]_75 chrVII:405350-405710 4.1e-11 30_[+2]_49 chrVII:828530-828992 4.1e-11 21_[-2]_58 chrXI:578848-579251 6.8e-11 30_[+2]_49 chrXVI:768954-769468 6.8e-11 55_[-2]_24 chrXI:140837-141297 8e-11 10_[-2]_69 chrIV:1016938-1017478 8e-11 58_[-2]_21 chrVII:328355-328959 8e-11 16_[+2]_63 chrV:487158-487564 8e-11 29_[-2]_50 chrVII:401387-401786 8e-11 [-2]_79 chrXV:980457-981013 2.3e-10 71_[+2]_8 chrXIV:567888-568474 2.3e-10 55_[+2]_24 chrXI:46549-46983 4.3e-10 28_[-2]_51 chrXIV:560431-560990 8.9e-10 42_[-2]_37 chrXVI:559981-560485 8.9e-10 24_[-2]_55 chrVI:157745-158202 8.9e-10 2_[-2]_77 chrXV:113591-114050 8.9e-10 73_[+2]_6 chrVIII:237656-238150 8.9e-10 4_[-2]_75 chrX:58898-58998 8.9e-10 37_[-2]_42 chrIV:488566-489087 4.6e-09 30_[-2]_49 chrXII:448453-448959 5.1e-09 3_[-2]_76 chrV:250119-250546 5.1e-09 44_[+2]_35 chrVI:137286-137689 1.3e-08 58_[-2]_21 chrXIV:102543-102972 1.3e-08 51_[+2]_28 chrXII:687675-688140 2.7e-08 11_[-2]_68 chrX:422720-422820 3.3e-08 79_[+2] chrX:517666-517766 8.1e-08 10_[-2]_69 chrIX:324067-324521 1.1e-07 68_[-2]_11 chrIV:619791-620175 2.2e-07 45_[-2]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCMKGGGTTCGANYCCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAGRTCMKGGGTTCGANYCCC width=21 seqs=40 chrVII:876221-876706 ( 23) AAGGTTAGGGGTTCGAGCCCC 1 chrX:414808-414908 ( 58) AAGGTTAGGGGTTCGAGCCCC 1 chrVII:185577-185953 ( 9) AAGGTTAGGGGTTCGAGCCCC 1 chrXVI:581918-582260 ( 65) AAGGTTAGGGGTTCGAGCCCC 1 chrXII:734636-735067 ( 44) GGGATCAGCGGTTCGATCCCG 1 chrXIV:569653-570177 ( 12) GGGATCAGCGGTTCGATCCCG 1 chrIX:210466-210945 ( 53) GGGATCAGCGGTTCGATCCCG 1 chrXVI:880081-880542 ( 45) GGGATCAGCGGTTCGATCCCG 1 chrVII:794213-794646 ( 80) GAGGTCATCGGTTCGATTCCG 1 chrII:405690-406142 ( 53) AAGATTATGGGTTCGACCCCC 1 chrII:405690-406154 ( 47) AAGATTATGGGTTCGACCCCC 1 chrV:138464-139040 ( 5) AAGATTATGGGTTCGACCCCC 1 chrVII:405350-405710 ( 31) AAGATTATGGGTTCGACCCCC 1 chrVII:828530-828992 ( 22) AAGATTATGGGTTCGACCCCC 1 chrXI:578848-579251 ( 31) AATGTCAGGGGTTCGAGCCCC 1 chrXVI:768954-769468 ( 56) AATGTCAGGGGTTCGAGCCCC 1 chrXI:140837-141297 ( 11) GGAGACCGGGGTTCGACTCCC 1 chrIV:1016938-1017478 ( 59) GGAGACCGGGGTTCGACTCCC 1 chrVII:328355-328959 ( 17) GGAGACCGGGGTTCGACTCCC 1 chrV:487158-487564 ( 30) GGAGACCGGGGTTCGACTCCC 1 chrVII:401387-401786 ( 1) GGAGACCGGGGTTCGACTCCC 1 chrXV:980457-981013 ( 72) GAGGCCCTGGGTTCAATTCCC 1 chrXIV:567888-568474 ( 56) GAGGCCCTGGGTTCAATTCCC 1 chrXI:46549-46983 ( 29) GGGATCGTGGGTTCAATTCCC 1 chrXIV:560431-560990 ( 43) GAGATCATCGGTTCAAATCCG 1 chrXVI:559981-560485 ( 25) GAGGTCCTGTGTTCGATCCAC 1 chrVI:157745-158202 ( 3) GAGGTCCTGTGTTCGATCCAC 1 chrXV:113591-114050 ( 74) GAGATCATCGGTTCAAATCCG 1 chrVIII:237656-238150 ( 5) GAGGTCCTGTGTTCGATCCAC 1 chrX:58898-58998 ( 38) GAGATCATCGGTTCAAATCCG 1 chrIV:488566-489087 ( 31) AAGATCCCGAGTTCGAACCTC 1 chrXII:448453-448959 ( 4) GACAACCCCGGTTCGAATCCG 1 chrV:250119-250546 ( 45) GACAACCCCGGTTCGAATCCG 1 chrVI:137286-137689 ( 59) AAGATCGTGAGTTCAACCCTC 1 chrXIV:102543-102972 ( 52) AAGATCGTGAGTTCAACCCTC 1 chrXII:687675-688140 ( 12) AACGTCCCCAGTTCGATCCTG 1 chrX:422720-422820 ( 80) AAGGTCGAGAGTTCGAACCTC 1 chrX:517666-517766 ( 11) GATGTCCTCGGATCGAAACCG 1 chrIX:324067-324521 ( 69) CCAGATCGGGGTTCAATTCCC 1 chrIV:619791-620175 ( 46) AAGATTCCAGGTTCAAGTCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCMKGGGTTCGANYCCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 44960 bayes= 9.56693 E= 1.0e-135 39 -280 166 -1197 116 -280 52 -1197 -112 -122 200 -212 55 -1197 159 -1197 -70 -180 -1197 120 -1197 205 -1197 -24 55 128 -80 -1197 -370 -48 120 47 -370 78 195 -1197 -138 -1197 220 -212 -1197 -1197 252 -1197 -370 -1197 -1197 158 -1197 -1197 -1197 162 -1197 252 -1197 -1197 -38 -1197 210 -1197 162 -1197 -1197 -1197 -70 78 0 0 -370 172 -1197 30 -1197 252 -1197 -1197 -212 220 -1197 -138 -1197 195 78 -370 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCMKGGGTTCGANYCCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 40 E= 1.0e-135 0.425000 0.025000 0.550000 0.000000 0.725000 0.025000 0.250000 0.000000 0.150000 0.075000 0.700000 0.075000 0.475000 0.000000 0.525000 0.000000 0.200000 0.050000 0.000000 0.750000 0.000000 0.725000 0.000000 0.275000 0.475000 0.425000 0.100000 0.000000 0.025000 0.125000 0.400000 0.450000 0.025000 0.300000 0.675000 0.000000 0.125000 0.000000 0.800000 0.075000 0.000000 0.000000 1.000000 0.000000 0.025000 0.000000 0.000000 0.975000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 1.000000 0.000000 0.000000 0.000000 0.200000 0.300000 0.175000 0.325000 0.025000 0.575000 0.000000 0.400000 0.000000 1.000000 0.000000 0.000000 0.075000 0.800000 0.000000 0.125000 0.000000 0.675000 0.300000 0.025000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCMKGGGTTCGANYCCC MEME-2 regular expression -------------------------------------------------------------------------------- [GA][AG]G[GA][TA][CT][AC][TG][GC]GGTTC[GA]A[TCA][CT]CC[CG] -------------------------------------------------------------------------------- Time 591.29 secs. ******************************************************************************** ******************************************************************************** MOTIF WNYWTTTTTTTWHTTTTTTTTTTTNTTTT MEME-3 width = 29 sites = 82 llr = 945 E-value = 7.5e-055 ******************************************************************************** -------------------------------------------------------------------------------- Motif WNYWTTTTTTTWHTTTTTTTTTTTNTTTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 4313::2112:3422:11::111221112 pos.-specific C 224:11:221:1311111:::13:31113 probability G :2:1::::11:1::1:21::::113:21: matrix T 5356997655a53759679a976727766 bits 2.5 2.3 2.0 1.8 Relative 1.5 Entropy 1.3 * * * * (16.6 bits) 1.0 ** * * *** 0.8 *** * * *** 0.5 * **** * * * ***** * ** * 0.3 * ********* ***************** 0.0 ----------------------------- Multilevel TATTTTTTTTTTATTTTTTTTTTTCTTTT consensus ATCA A AT CAG C sequence C A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WNYWTTTTTTTWHTTTTTTTTTTTNTTTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXII:704318-704574 + 43 1.07e-11 GCAAAGTTAC ACTTTTTTTTTCATTTTTTTTTTTCTTTT CTCCTCCATC chrXIV:720886-721144 - 65 3.88e-11 TTTTTTC TTTTTTTTTGTTATTTTTTTTTTTGTTCT TATTATATGG chrXIV:283175-283699 + 67 1.24e-10 ACAAAAAGTG TGCTTTTTTCTTCTATTTTTTTTTCTTTA ATGAC chrIV:355237-355744 + 57 1.15e-09 CAACCTTTTT TTCTTTATTTTCTTTTTTTTTTTTATTTT TCATTTTCAA chrXII:263077-263611 - 8 1.97e-09 CTTCGTTTCG TACATTTTTATTTTTTTTTTTTTGGTTTT ACTATCT chrX:226792-226892 + 34 2.35e-09 CGCATTGGTC TTCATTTTTTTTCTTTTGTTTTTAGCTTT AATGTTGAAA chrVII:611489-611740 + 6 5.48e-09 AACCG CTTTTTTTCCTTTTTTTTTTTTTTACTTT GTTTGACCTC chrII:394690-395375 - 56 8.88e-09 TATATTTTAT TTCATTTACTTATTTTTTTTTTTTCTTTA CTCCTTTTTT chrXV:1003889-1005034 + 61 1.21e-08 ATTCCAGTCC AATATTTTACTTCATTTTTTTTTTCTGTT CTCGCTTGGC chrXVI:678874-679264 + 45 1.64e-08 CGTACTTTAA AGTATTTTCTTTCTTTTTTTTCCTGCTAC TTACGCTAGG chrXIII:698618-698750 - 47 1.91e-08 ATTTTTCAGT AGTTTTTTTGCAATTTTTTTTTTTTTTTT TACCAAAGTA chrVI:148476-148726 - 23 3.40e-08 AACAAAAACT ATTTTTTCTTTAATTTCTTTTTTTACTTT CTATTTTTAA chrI:71548-71886 + 20 3.40e-08 TTCATATTCA TTCTTTTTCATCCTTTGGTTTTTTATTCT TAACTTGTTT chrVII:609429-610001 - 54 5.92e-08 CTACGTAGGC CCTTTTTTAGTTCCTTTTTTTTTTCTCCC TCGGTCTGTT chrX:648940-649040 + 71 7.73e-08 AAAAAAAGAT AATTTTTTTTTTTTGTTTTTCCCTGCTTC C chrVII:1048501-1048784 - 34 8.82e-08 TTCGCTAATC TTTTTTTTTTTTTTTCATTTTCCTATTTT AGTTCGTTTA chrXII:919235-919374 + 36 1.30e-07 AATGATTAAC CTTGTTAGGTTTATGTTTTTTTTTGTTTT AAATTTGTGA chrIX:427098-427570 + 13 1.47e-07 TGTCTAAAAA AACTTTTTGCCTTTTTTTTTTTCACTGGT TTTCAGGCAC chrIV:541192-541845 - 8 1.47e-07 CAGAGTAGCT TTCATTTTCTTTATTTCTGTTTCTGTTTC GCGTCGG chrXIV:167038-167266 + 27 1.67e-07 TATGTAATTC TGTTTTGTAATAATTTTTTTTCCTGTTTC ATAATAAAGA chrXV:977943-978446 - 2 1.67e-07 AAAGTCTCTC TACTTTACTATTATTTTTTTTTTTTGTTC A chrX:436135-436235 + 56 1.67e-07 GGAAATCATA AACATTGTTTTTTTGTGTTTTTTATTTTT AAATAAAAAG chrXIII:408480-408723 - 35 2.72e-07 CCGCGTACGT AGTTTTACTTTTAATTTTTTTTTTATCGC GCGTTGTCCC chrXII:445195-445719 - 49 2.72e-07 AAAATTTCGC TCCTTTTCTGTTTTCTATTTTCTATTTTC CCAACTTTTG chrXIV:174221-174622 - 28 3.44e-07 TACTATTGTC TATTTTTTTGTATTGTAGTTTTCTCTGAT TACACATTTT chrXV:307251-307775 - 48 3.44e-07 AGGGGAAATG CTCATTTTCTTTTTTTATTTTAGTTTTTT AGTGATTTTG chrII:593054-593250 - 18 3.44e-07 TTAAAAATAA ATTATTTCCTTACTTTTTTTTCTACAGTT TGCACCATTA chrXV:544376-544900 - 66 3.86e-07 TGGGCT TTCGTCTTTTTTAAATTTTTTTTTCTCTA TTACAGTAAC chrIII:137538-137841 + 26 3.86e-07 TAGTTTTTCA AGTTCTTAGATGCTTTCTTTTTCTCTTTT TTACAGATCA chrXIV:628653-629020 + 18 6.08e-07 TTAAAAAATA TACATTTTTTTATTATTTTTTTATATATT AATGTTAAAA chrXV:254574-254998 - 71 6.08e-07 T CCCTTTTTTTTTTATTTTTTTTTTGAAAC AATGCATTAA chrIV:385875-386419 - 52 6.08e-07 AAGAAAAAAA TAAACTTTCCTTCTTTTTTTTTTGGTTCC TGCGGCTCTT chrXV:254574-254996 - 72 6.08e-07 . CCCTTTTTTTTTTATTTTTTTTTTGAAAC AATGCATTAA chrXVI:880081-880542 - 10 7.58e-07 CCCGCTAGAG ACCATTTCTTTTCTCTTTCTTTTTCTCGA AAGAGACAG chrXIII:426213-426490 - 68 9.40e-07 GGTT TCATTTTTGCTTATGTTCTTTTTATTGTT TAATACGTGC chrIV:1302035-1302380 + 52 9.40e-07 TATTTTACTT CACGTTATATTCTTTTTTTTTACTGTTGC AGCAAATTGT chrII:556167-556586 + 31 1.16e-06 CAAAAATAAC TTATTTATCATATCATTTTTTTCTCTGTT TATTTCTTCT chrV:301583-301878 + 1 1.16e-06 . AATTTATATTTTCTTTTGTTTTCTCTGAT AAAAAAATTG chrIV:1013025-1013401 - 62 1.29e-06 TTTGCCTTTT ATCATTTTTGTACTTTTTTCTTCGCTTAA AATACACATG chrX:120302-120402 - 39 1.43e-06 AAGGAATATG AGTTTCTTATTGATATTTTTTTGAGCTTT GAGGTAAAAG chrXIV:718373-718897 - 57 2.14e-06 ACCACAAGCT TTCGTTTTTTTACTCTGTTTAATTCTTCA AGTTGTGTTT chrXII:1031997-1032166 + 59 2.37e-06 ACTAATATTA TCTTTCAATTTTACATGTTTTTTTCTGCC ATAAAAAAGC chrXI:283028-283522 - 67 2.37e-06 GTACT TCCTTTTTGTTATTTTGACTTTCATTTTT CTTTAAGAAA chrXII:639757-640240 + 40 2.37e-06 TTTTAATTTC TATGTTTTTGTAATATTGTTTATTTTGGT AAAATATAGA chrVII:921781-922024 - 22 2.61e-06 ACACAATGAA TGTATTTCTTTTTTCTTGATTTTTATTTA GCCGCTAAAT chrVII:598619-598821 + 6 3.16e-06 CAAAT AATACTACTTTGAATTGTTTTTTACTGTT TCCCAGGAGA chrXVI:172978-174114 + 41 3.16e-06 TCTTAATATG ACTTCTTTGCTAACATTTTTTTCATTTTT GAATAGAAAA chrXV:724840-725599 + 67 3.48e-06 TTTTTTCGAC CTTTTTTGTTTGTTATTGTTTCTTTTTAC CTTAC chrVII:535454-535800 + 71 3.82e-06 CGGTATTTCT AATATTACGTTATTTTTATTTTCTTTTAC T chrXIII:259056-259480 + 33 3.82e-06 TACTAACTTG ATTATTTGTGTATTCTGTTTTCTTGTGAT TCCTTCTGGT chrIV:556331-556670 - 60 4.20e-06 ATCTTTTTCA ATTTTTTGTTTGTATTCTTTTCTTGCTTA AATCTATAAC chrIII:114301-114734 - 24 4.60e-06 ATGAAATATA TATTTCTTACTATTTCTTTTTTAACTTTC GGAAATCAAA chrV:151896-152293 - 51 5.05e-06 AGTTTTTCTT TTCCTTTTCTTGAAACCTTTTTTTCTTTT CGGAAATCTA chrXIII:287480-287775 + 4 6.05e-06 CGC AGCTTCACTTTTAAGTTTCTTTTTCTCCT CACGGCGCAA chrXVI:585856-586129 + 43 7.22e-06 ACCTGATGCA TCATTCTTTATCTTGTTTTTTGTTGTTGT TTGAGTTTCT chrXIV:500090-500845 + 37 7.22e-06 AGAGCCACTT TACGTTTTCTCAAATTGCTTTTGTTTTTT CTTCTATTGA chrV:423468-423692 - 29 7.89e-06 AACATACTTT TCCTGTTTGATTATGTGTATTTATCTTTC TTTTTGAAAG chrIV:619791-620175 - 9 7.89e-06 CTGGCGGGGA AGATTTTTTATACATTTTTCTAGACTTTT GATTTTTA chrXII:499235-499664 + 67 9.38e-06 AAAGGCTTTT AATATTGTCATTATTTACTTTTCTATTTA CAACA chrII:558264-558402 + 53 9.38e-06 TTTTAACTAG CATTTTACTATTCTGTACTTTTTACTTGA AATTCCAGAA chrXIII:390705-390863 + 14 9.38e-06 GAAGATCATG TATTTTGCGGTTAACCTGTTTTTTTTTTT TCGGTCAAGG chrXI:334845-335135 - 56 1.02e-05 TATTTTGGTT AATGTTTTCATTCAATGGTTTACTACTTT CATTTTAGCT chrII:605462-605721 + 32 1.02e-05 GATCATTTTT CATTTTACTTTGTCATTTTTATTTCATTT GAAAATGGGT chrXI:642491-643015 + 65 1.02e-05 CTTTCACTGA AATGTTTTCATTCTCTGATTTTATATTTA GTTGGCG chrXII:912194-912718 + 12 1.11e-05 CAATTTGCTA ACCTTTATGATATTTTATTTATGTATGTT CGTGTGAAGT chrXIV:230512-230821 - 58 1.11e-05 GTTAAAATAT AGTTTTTTCTTGAATTTTTTTAAAATCCT CATACTTACC chrXII:201734-202117 - 35 1.11e-05 TGGGCAAACT TTTGTTTATCTGATGTGTTTTATACTATT ATCTTTTTAA chrXV:678347-678896 + 22 1.21e-05 TAATGATACA ATATTTTATTTTCTTTTCATTTTTCAGTC ATTATCTACA chrII:143326-143850 - 9 1.31e-05 CTGAACAGGG AGATTATTTATCATTTTTTTTCTTACTCT TCGAGTTG chrXII:1038661-1039185 - 26 1.43e-05 TACCTAATGA CACAGTTTTTTACACTTTTTTTGAGTTAA ATTATTCAAG chrXVI:680675-681199 - 25 1.55e-05 GACTTTTATT TGCTGTTATTTTACATATTTTTCAATTGT TCTTTTGAGG chrV:322048-322792 - 62 1.68e-05 CGGGCAGCGT TGCATTTTCTTAATTTTTTTCTCGTGGTA GAAGTCAAGG chrII:681252-682032 - 51 1.82e-05 CAGGTCTCAC TACTTTTTGCTGCTATTTTTCTTCGCTCA TGGTTTCTTC chrXII:708140-708456 - 17 2.13e-05 CTATAACGAA TTATTTAATTTTCTTCGATTTACTGTGTT TCTACCATTT chrXIII:289692-289925 + 33 2.13e-05 TTTTATTTAA CGATTTTTAATGATGTTTTTATTTGTACC ACTCATTTAT chrV:68639-69163 - 60 2.13e-05 CCTCCATGTG TCCTTCTCGTCTATCTTGTTCTGTCTGGT ATAGAGTAAT chrVII:170738-171262 + 25 2.30e-05 TTTCTTTTTG TCTATTACTGTCATTTTATTTTCAAATCC AATTGTCCTT chrXI:618590-618770 + 23 2.49e-05 TCAATCATTT TCCATTTATGTCTTTCGTTTATGGCTTTT TTGCTATCGT chrIV:1489758-1489998 - 64 3.12e-05 GAAATTCT TGATTTTCTTTTCCATCTTCTCCTACTGT ATTATTTACT chrV:100205-100448 + 65 3.12e-05 TTATTTTATA TATTCTATATTACAGTTTTCTTTTTTTAC AAATTCA chrV:79405-79671 - 21 4.84e-05 ATAAAAAGTC TATATTTAAGTTCTTTTATTTATTAATAC ATTTTTTTTT chrII:611981-612270 - 46 7.85e-05 TTATTATACA CATATCATATTTCTATATTTTTAAGATTT GGTTATATAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WNYWTTTTTTTWHTTTTTTTTTTTNTTTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:704318-704574 1.1e-11 42_[+3]_29 chrXIV:720886-721144 3.9e-11 64_[-3]_7 chrXIV:283175-283699 1.2e-10 66_[+3]_5 chrIV:355237-355744 1.1e-09 56_[+3]_15 chrXII:263077-263611 2e-09 7_[-3]_64 chrX:226792-226892 2.4e-09 33_[+3]_38 chrVII:611489-611740 5.5e-09 5_[+3]_66 chrII:394690-395375 8.9e-09 55_[-3]_16 chrXV:1003889-1005034 1.2e-08 60_[+3]_11 chrXVI:678874-679264 1.6e-08 44_[+3]_27 chrXIII:698618-698750 1.9e-08 46_[-3]_25 chrVI:148476-148726 3.4e-08 22_[-3]_49 chrI:71548-71886 3.4e-08 19_[+3]_52 chrVII:609429-610001 5.9e-08 53_[-3]_18 chrX:648940-649040 7.7e-08 70_[+3]_1 chrVII:1048501-1048784 8.8e-08 33_[-3]_38 chrXII:919235-919374 1.3e-07 35_[+3]_36 chrIX:427098-427570 1.5e-07 12_[+3]_59 chrIV:541192-541845 1.5e-07 7_[-3]_64 chrXIV:167038-167266 1.7e-07 26_[+3]_45 chrXV:977943-978446 1.7e-07 1_[-3]_70 chrX:436135-436235 1.7e-07 55_[+3]_16 chrXIII:408480-408723 2.7e-07 34_[-3]_37 chrXII:445195-445719 2.7e-07 48_[-3]_23 chrXIV:174221-174622 3.4e-07 27_[-3]_44 chrXV:307251-307775 3.4e-07 47_[-3]_24 chrII:593054-593250 3.4e-07 17_[-3]_54 chrXV:544376-544900 3.9e-07 65_[-3]_6 chrIII:137538-137841 3.9e-07 25_[+3]_46 chrXIV:628653-629020 6.1e-07 17_[+3]_54 chrXV:254574-254998 6.1e-07 70_[-3]_1 chrIV:385875-386419 6.1e-07 51_[-3]_20 chrXV:254574-254996 6.1e-07 71_[-3] chrXVI:880081-880542 7.6e-07 9_[-3]_62 chrXIII:426213-426490 9.4e-07 67_[-3]_4 chrIV:1302035-1302380 9.4e-07 51_[+3]_20 chrII:556167-556586 1.2e-06 30_[+3]_41 chrV:301583-301878 1.2e-06 [+3]_71 chrIV:1013025-1013401 1.3e-06 61_[-3]_10 chrX:120302-120402 1.4e-06 38_[-3]_33 chrXIV:718373-718897 2.1e-06 56_[-3]_15 chrXII:1031997-1032166 2.4e-06 58_[+3]_13 chrXI:283028-283522 2.4e-06 66_[-3]_5 chrXII:639757-640240 2.4e-06 39_[+3]_32 chrVII:921781-922024 2.6e-06 21_[-3]_50 chrVII:598619-598821 3.2e-06 5_[+3]_66 chrXVI:172978-174114 3.2e-06 40_[+3]_31 chrXV:724840-725599 3.5e-06 66_[+3]_5 chrVII:535454-535800 3.8e-06 70_[+3]_1 chrXIII:259056-259480 3.8e-06 32_[+3]_39 chrIV:556331-556670 4.2e-06 59_[-3]_12 chrIII:114301-114734 4.6e-06 23_[-3]_48 chrV:151896-152293 5e-06 50_[-3]_21 chrXIII:287480-287775 6e-06 3_[+3]_68 chrXVI:585856-586129 7.2e-06 42_[+3]_29 chrXIV:500090-500845 7.2e-06 36_[+3]_35 chrV:423468-423692 7.9e-06 28_[-3]_43 chrIV:619791-620175 7.9e-06 8_[-3]_63 chrXII:499235-499664 9.4e-06 66_[+3]_5 chrII:558264-558402 9.4e-06 52_[+3]_19 chrXIII:390705-390863 9.4e-06 13_[+3]_58 chrXI:334845-335135 1e-05 55_[-3]_16 chrII:605462-605721 1e-05 31_[+3]_40 chrXI:642491-643015 1e-05 64_[+3]_7 chrXII:912194-912718 1.1e-05 11_[+3]_60 chrXIV:230512-230821 1.1e-05 57_[-3]_14 chrXII:201734-202117 1.1e-05 34_[-3]_37 chrXV:678347-678896 1.2e-05 21_[+3]_50 chrII:143326-143850 1.3e-05 8_[-3]_63 chrXII:1038661-1039185 1.4e-05 25_[-3]_46 chrXVI:680675-681199 1.5e-05 24_[-3]_47 chrV:322048-322792 1.7e-05 61_[-3]_10 chrII:681252-682032 1.8e-05 50_[-3]_21 chrXII:708140-708456 2.1e-05 16_[-3]_55 chrXIII:289692-289925 2.1e-05 32_[+3]_39 chrV:68639-69163 2.1e-05 59_[-3]_12 chrVII:170738-171262 2.3e-05 24_[+3]_47 chrXI:618590-618770 2.5e-05 22_[+3]_49 chrIV:1489758-1489998 3.1e-05 63_[-3]_8 chrV:100205-100448 3.1e-05 64_[+3]_7 chrV:79405-79671 4.8e-05 20_[-3]_51 chrII:611981-612270 7.8e-05 45_[-3]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WNYWTTTTTTTWHTTTTTTTTTTTNTTTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WNYWTTTTTTTWHTTTTTTTTTTTNTTTT width=29 seqs=82 chrXII:704318-704574 ( 43) ACTTTTTTTTTCATTTTTTTTTTTCTTTT 1 chrXIV:720886-721144 ( 65) TTTTTTTTTGTTATTTTTTTTTTTGTTCT 1 chrXIV:283175-283699 ( 67) TGCTTTTTTCTTCTATTTTTTTTTCTTTA 1 chrIV:355237-355744 ( 57) TTCTTTATTTTCTTTTTTTTTTTTATTTT 1 chrXII:263077-263611 ( 8) TACATTTTTATTTTTTTTTTTTTGGTTTT 1 chrX:226792-226892 ( 34) TTCATTTTTTTTCTTTTGTTTTTAGCTTT 1 chrVII:611489-611740 ( 6) CTTTTTTTCCTTTTTTTTTTTTTTACTTT 1 chrII:394690-395375 ( 56) TTCATTTACTTATTTTTTTTTTTTCTTTA 1 chrXV:1003889-1005034 ( 61) AATATTTTACTTCATTTTTTTTTTCTGTT 1 chrXVI:678874-679264 ( 45) AGTATTTTCTTTCTTTTTTTTCCTGCTAC 1 chrXIII:698618-698750 ( 47) AGTTTTTTTGCAATTTTTTTTTTTTTTTT 1 chrVI:148476-148726 ( 23) ATTTTTTCTTTAATTTCTTTTTTTACTTT 1 chrI:71548-71886 ( 20) TTCTTTTTCATCCTTTGGTTTTTTATTCT 1 chrVII:609429-610001 ( 54) CCTTTTTTAGTTCCTTTTTTTTTTCTCCC 1 chrX:648940-649040 ( 71) AATTTTTTTTTTTTGTTTTTCCCTGCTTC 1 chrVII:1048501-1048784 ( 34) TTTTTTTTTTTTTTTCATTTTCCTATTTT 1 chrXII:919235-919374 ( 36) CTTGTTAGGTTTATGTTTTTTTTTGTTTT 1 chrIX:427098-427570 ( 13) AACTTTTTGCCTTTTTTTTTTTCACTGGT 1 chrIV:541192-541845 ( 8) TTCATTTTCTTTATTTCTGTTTCTGTTTC 1 chrXIV:167038-167266 ( 27) TGTTTTGTAATAATTTTTTTTCCTGTTTC 1 chrXV:977943-978446 ( 2) TACTTTACTATTATTTTTTTTTTTTGTTC 1 chrX:436135-436235 ( 56) AACATTGTTTTTTTGTGTTTTTTATTTTT 1 chrXIII:408480-408723 ( 35) AGTTTTACTTTTAATTTTTTTTTTATCGC 1 chrXII:445195-445719 ( 49) TCCTTTTCTGTTTTCTATTTTCTATTTTC 1 chrXIV:174221-174622 ( 28) TATTTTTTTGTATTGTAGTTTTCTCTGAT 1 chrXV:307251-307775 ( 48) CTCATTTTCTTTTTTTATTTTAGTTTTTT 1 chrII:593054-593250 ( 18) ATTATTTCCTTACTTTTTTTTCTACAGTT 1 chrXV:544376-544900 ( 66) TTCGTCTTTTTTAAATTTTTTTTTCTCTA 1 chrIII:137538-137841 ( 26) AGTTCTTAGATGCTTTCTTTTTCTCTTTT 1 chrXIV:628653-629020 ( 18) TACATTTTTTTATTATTTTTTTATATATT 1 chrXV:254574-254998 ( 71) CCCTTTTTTTTTTATTTTTTTTTTGAAAC 1 chrIV:385875-386419 ( 52) TAAACTTTCCTTCTTTTTTTTTTGGTTCC 1 chrXV:254574-254996 ( 72) CCCTTTTTTTTTTATTTTTTTTTTGAAAC 1 chrXVI:880081-880542 ( 10) ACCATTTCTTTTCTCTTTCTTTTTCTCGA 1 chrXIII:426213-426490 ( 68) TCATTTTTGCTTATGTTCTTTTTATTGTT 1 chrIV:1302035-1302380 ( 52) CACGTTATATTCTTTTTTTTTACTGTTGC 1 chrII:556167-556586 ( 31) TTATTTATCATATCATTTTTTTCTCTGTT 1 chrV:301583-301878 ( 1) AATTTATATTTTCTTTTGTTTTCTCTGAT 1 chrIV:1013025-1013401 ( 62) ATCATTTTTGTACTTTTTTCTTCGCTTAA 1 chrX:120302-120402 ( 39) AGTTTCTTATTGATATTTTTTTGAGCTTT 1 chrXIV:718373-718897 ( 57) TTCGTTTTTTTACTCTGTTTAATTCTTCA 1 chrXII:1031997-1032166 ( 59) TCTTTCAATTTTACATGTTTTTTTCTGCC 1 chrXI:283028-283522 ( 67) TCCTTTTTGTTATTTTGACTTTCATTTTT 1 chrXII:639757-640240 ( 40) TATGTTTTTGTAATATTGTTTATTTTGGT 1 chrVII:921781-922024 ( 22) TGTATTTCTTTTTTCTTGATTTTTATTTA 1 chrVII:598619-598821 ( 6) AATACTACTTTGAATTGTTTTTTACTGTT 1 chrXVI:172978-174114 ( 41) ACTTCTTTGCTAACATTTTTTTCATTTTT 1 chrXV:724840-725599 ( 67) CTTTTTTGTTTGTTATTGTTTCTTTTTAC 1 chrVII:535454-535800 ( 71) AATATTACGTTATTTTTATTTTCTTTTAC 1 chrXIII:259056-259480 ( 33) ATTATTTGTGTATTCTGTTTTCTTGTGAT 1 chrIV:556331-556670 ( 60) ATTTTTTGTTTGTATTCTTTTCTTGCTTA 1 chrIII:114301-114734 ( 24) TATTTCTTACTATTTCTTTTTTAACTTTC 1 chrV:151896-152293 ( 51) TTCCTTTTCTTGAAACCTTTTTTTCTTTT 1 chrXIII:287480-287775 ( 4) AGCTTCACTTTTAAGTTTCTTTTTCTCCT 1 chrXVI:585856-586129 ( 43) TCATTCTTTATCTTGTTTTTTGTTGTTGT 1 chrXIV:500090-500845 ( 37) TACGTTTTCTCAAATTGCTTTTGTTTTTT 1 chrV:423468-423692 ( 29) TCCTGTTTGATTATGTGTATTTATCTTTC 1 chrIV:619791-620175 ( 9) AGATTTTTTATACATTTTTCTAGACTTTT 1 chrXII:499235-499664 ( 67) AATATTGTCATTATTTACTTTTCTATTTA 1 chrII:558264-558402 ( 53) CATTTTACTATTCTGTACTTTTTACTTGA 1 chrXIII:390705-390863 ( 14) TATTTTGCGGTTAACCTGTTTTTTTTTTT 1 chrXI:334845-335135 ( 56) AATGTTTTCATTCAATGGTTTACTACTTT 1 chrII:605462-605721 ( 32) CATTTTACTTTGTCATTTTTATTTCATTT 1 chrXI:642491-643015 ( 65) AATGTTTTCATTCTCTGATTTTATATTTA 1 chrXII:912194-912718 ( 12) ACCTTTATGATATTTTATTTATGTATGTT 1 chrXIV:230512-230821 ( 58) AGTTTTTTCTTGAATTTTTTTAAAATCCT 1 chrXII:201734-202117 ( 35) TTTGTTTATCTGATGTGTTTTATACTATT 1 chrXV:678347-678896 ( 22) ATATTTTATTTTCTTTTCATTTTTCAGTC 1 chrII:143326-143850 ( 9) AGATTATTTATCATTTTTTTTCTTACTCT 1 chrXII:1038661-1039185 ( 26) CACAGTTTTTTACACTTTTTTTGAGTTAA 1 chrXVI:680675-681199 ( 25) TGCTGTTATTTTACATATTTTTCAATTGT 1 chrV:322048-322792 ( 62) TGCATTTTCTTAATTTTTTTCTCGTGGTA 1 chrII:681252-682032 ( 51) TACTTTTTGCTGCTATTTTTCTTCGCTCA 1 chrXII:708140-708456 ( 17) TTATTTAATTTTCTTCGATTTACTGTGTT 1 chrXIII:289692-289925 ( 33) CGATTTTTAATGATGTTTTTATTTGTACC 1 chrV:68639-69163 ( 60) TCCTTCTCGTCTATCTTGTTCTGTCTGGT 1 chrVII:170738-171262 ( 25) TCTATTACTGTCATTTTATTTTCAAATCC 1 chrXI:618590-618770 ( 23) TCCATTTATGTCTTTCGTTTATGGCTTTT 1 chrIV:1489758-1489998 ( 64) TGATTTTCTTTTCCATCTTCTCCTACTGT 1 chrV:100205-100448 ( 65) TATTCTATATTACAGTTTTCTTTTTTTAC 1 chrV:79405-79671 ( 21) TATATTTAAGTTCTTTTATTTATTAATAC 1 chrII:611981-612270 ( 46) CATATCATATTTCTATATTTTTAAGATTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WNYWTTTTTTTWHTTTTTTTTTTTNTTTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 40464 bayes= 9.91054 E= 7.5e-055 12 -14 -1300 58 2 16 16 -21 -142 116 -1300 58 -15 -384 -67 85 -1300 -152 -225 147 -374 -84 -1300 143 -65 -1300 -184 119 -142 16 -184 96 -142 16 -25 72 -74 -52 -25 72 -1300 -184 -1300 155 -28 -84 -38 62 17 80 -1300 2 -74 -103 -1300 114 -74 -67 -25 75 -1300 -125 -1300 151 -157 -125 -3 99 -215 -152 -52 119 -315 -225 -384 149 -1300 -184 -1300 155 -242 -184 -1300 145 -142 -38 -384 117 -215 62 -84 79 -49 -384 -152 109 -57 97 55 -83 -174 -38 -284 119 -242 -125 16 104 -115 -25 -52 85 -93 62 -1300 79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WNYWTTTTTTTWHTTTTTTTTTTTNTTTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 82 E= 7.5e-055 0.353659 0.158537 0.000000 0.487805 0.329268 0.195122 0.195122 0.280488 0.121951 0.390244 0.000000 0.487805 0.292683 0.012195 0.109756 0.585366 0.000000 0.060976 0.036585 0.902439 0.024390 0.097561 0.000000 0.878049 0.207317 0.000000 0.048780 0.743902 0.121951 0.195122 0.048780 0.634146 0.121951 0.195122 0.146341 0.536585 0.195122 0.121951 0.146341 0.536585 0.000000 0.048780 0.000000 0.951220 0.268293 0.097561 0.134146 0.500000 0.365854 0.304878 0.000000 0.329268 0.195122 0.085366 0.000000 0.719512 0.195122 0.109756 0.146341 0.548780 0.000000 0.073171 0.000000 0.926829 0.109756 0.073171 0.170732 0.646341 0.073171 0.060976 0.121951 0.743902 0.036585 0.036585 0.012195 0.914634 0.000000 0.048780 0.000000 0.951220 0.060976 0.048780 0.000000 0.890244 0.121951 0.134146 0.012195 0.731707 0.073171 0.268293 0.097561 0.560976 0.231707 0.012195 0.060976 0.695122 0.219512 0.341463 0.256098 0.182927 0.097561 0.134146 0.024390 0.743902 0.060976 0.073171 0.195122 0.670732 0.146341 0.146341 0.121951 0.585366 0.170732 0.268293 0.000000 0.560976 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WNYWTTTTTTTWHTTTTTTTTTTTNTTTT MEME-3 regular expression -------------------------------------------------------------------------------- [TA][AT][TC][TA]TT[TA]TTTT[TA][ATC]TTTTTTTTT[TC][TA][CGA]TTT[TC] -------------------------------------------------------------------------------- Time 871.72 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:58898-58998 9.70e-06 37_[-2(8.92e-10)]_42 chrII:394690-395375 1.18e-04 55_[-3(8.88e-09)]_16 chrVIII:549387-549911 9.60e-01 100 chrXII:214802-215107 1.45e-07 29_[-1(9.23e-12)]_48 chrIV:507970-508187 6.40e-01 100 chrI:141576-141985 9.75e-01 100 chrXII:962970-963321 1.59e-01 100 chrVIII:34360-35461 7.76e-02 100 chrII:371625-372149 1.55e-01 100 chrXI:326137-327199 4.48e-01 100 chrXII:201734-202117 1.38e-02 34_[-3(1.11e-05)]_37 chrIII:197392-197916 5.55e-01 100 chrVIII:237656-238150 5.70e-11 4_[-2(8.92e-10)]_39_[-1(5.33e-08)]_\ 13 chrXVI:214870-215173 9.33e-01 100 chrIV:579327-580162 1.03e-01 16_[+1(9.30e-05)]_61 chrXII:818432-818797 3.09e-02 43_[+1(1.13e-05)]_34 chrXIII:915059-915260 1.84e-01 100 chrXV:624073-624737 6.03e-01 100 chrXVI:277754-277941 9.29e-01 100 chrXVI:768954-769468 3.22e-07 55_[-2(6.75e-11)]_24 chrIV:720655-720988 8.78e-01 100 chrXVI:210058-210463 2.70e-01 100 chrV:77543-77909 4.26e-01 100 chrV:100205-100448 4.77e-02 64_[+3(3.12e-05)]_7 chrIV:1239796-1240320 4.72e-01 100 chrXV:671050-671462 9.17e-01 100 chrII:417493-418017 1.62e-01 75_[+2(8.80e-05)]_4 chrXV:723399-723923 7.31e-02 100 chrXIV:415391-416052 5.79e-01 100 chrX:222906-223006 3.93e-01 100 chrV:68639-69163 4.51e-02 59_[-3(2.13e-05)]_12 chrXVI:581918-582260 4.14e-13 21_[+1(1.85e-09)]_20_[+2(1.38e-11)]_\ 15 chrIV:589760-590284 5.82e-01 100 chrXV:779774-780948 2.26e-01 100 chrVII:828530-828992 3.22e-12 21_[-2(4.10e-11)]_19_[-1(5.49e-09)]_\ 16 chrII:256656-257146 1.68e-01 100 chrIV:1345343-1345722 7.13e-01 100 chrXVI:154133-154311 7.59e-01 100 chrXIII:296909-298875 7.47e-01 100 chrXI:218369-218574 9.82e-01 100 chrXII:242479-242658 6.77e-01 100 chrXII:1052098-1052312 3.56e-01 100 chrXV:93775-94368 5.29e-01 100 chrXVI:282303-282500 9.12e-01 100 chrIV:1078442-1078966 3.27e-01 100 chrXVI:64561-65085 6.79e-01 100 chrXI:618590-618770 2.82e-02 22_[+3(2.49e-05)]_49 chrVII:662838-663362 3.87e-01 100 chrIV:519567-519844 6.83e-01 100 chrXIII:265914-266438 9.76e-01 100 chrXIII:698618-698750 2.37e-04 46_[-3(1.91e-08)]_25 chrXV:113591-114050 3.73e-11 30_[+1(3.45e-09)]_20_[+2(8.92e-10)]_\ 6 chrIV:355237-355744 1.02e-05 56_[+3(1.15e-09)]_15 chrII:375595-375861 1.74e-01 100 chrV:269144-269504 8.07e-01 100 chrIV:218315-218685 4.35e-01 100 chrX:139178-139278 1.95e-01 100 chrXIII:761798-762282 2.39e-01 100 chrV:250119-250546 1.56e-07 2_[+1(1.26e-05)]_19_[+2(5.07e-09)]_\ 35 chrV:551268-551496 1.46e-07 4_[-1(1.39e-11)]_73 chrV:145698-145875 9.65e-01 100 chrXII:853523-854047 1.20e-01 100 chrV:301583-301878 6.32e-03 [+3(1.16e-06)]_71 chrI:71548-71886 3.87e-04 19_[+3(3.40e-08)]_52 chrXV:571751-572091 2.58e-01 100 chrXV:391593-391935 8.76e-01 100 chrX:227766-227866 3.62e-01 100 chrX:648940-649040 7.35e-04 70_[+3(7.73e-08)]_1 chrVIII:387277-387801 8.73e-01 100 chrX:413770-413870 8.66e-01 100 chrIII:137538-137841 2.50e-03 25_[+3(3.86e-07)]_46 chrXV:621293-622068 5.01e-01 100 chrVII:555322-555549 4.72e-01 100 chrXII:919235-919374 8.21e-04 35_[+3(1.30e-07)]_36 chrX:73675-73775 8.17e-01 100 chrXVI:678874-679264 7.48e-05 44_[+3(1.64e-08)]_27 chrXI:24901-25141 8.76e-01 100 chrVI:157745-158202 5.70e-11 2_[-2(8.92e-10)]_39_[-1(5.33e-08)]_\ 15 chrVII:702898-703290 6.01e-01 100 chrXVI:280729-281711 1.89e-01 100 chrXIV:282987-283202 1.89e-01 100 chrIII:114301-114734 1.73e-02 23_[-3(4.60e-06)]_48 chrXII:445195-445719 9.37e-04 48_[-3(2.72e-07)]_23 chrII:169309-169645 4.23e-01 100 chrIX:69462-69757 1.67e-01 100 chrXII:710069-710348 5.98e-01 100 chrIV:1161560-1161917 1.09e-01 39_[-2(6.68e-05)]_40 chrIV:509157-509609 8.75e-02 53_[-1(8.17e-05)]_24 chrX:76021-76121 9.16e-01 100 chrXVI:700402-700745 8.16e-01 100 chrIX:68992-69259 2.48e-01 100 chrXVI:172978-174114 5.65e-03 40_[+3(3.16e-06)]_31 chrIV:230060-230337 7.22e-01 100 chrII:562570-563094 2.94e-01 100 chrXI:431048-431292 3.29e-01 100 chrXII:1040252-1040776 7.61e-01 100 chrV:152841-153061 4.98e-01 100 chrXV:678347-678896 4.47e-02 21_[+3(1.21e-05)]_50 chrVIII:17032-17375 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1.48e-01 100 chrXVI:303953-304369 1.30e-01 100 chrXV:80942-81102 7.72e-01 100 chrXIII:764053-764577 5.24e-01 100 chrXII:210272-210469 9.64e-02 100 chrIV:976022-976550 3.78e-01 100 chrXI:208549-209073 5.81e-01 100 chrXIV:170838-171362 4.47e-01 100 chrII:544561-544797 6.05e-01 100 chrIV:308289-308813 5.33e-01 100 chrXIII:124437-124644 7.29e-01 100 chrXIII:915686-916210 4.04e-01 100 chrXVI:328999-329523 6.19e-01 100 chrV:102271-102568 7.22e-01 100 chrVIII:375292-375823 4.21e-01 100 chrVIII:531497-531800 6.33e-01 100 chrXII:1031997-1032166 1.06e-02 58_[+3(2.37e-06)]_13 chrV:66908-67311 2.61e-01 100 chrVIII:290669-290957 6.58e-01 100 chrII:372968-373492 5.98e-01 100 chrVII:364121-364435 2.24e-01 100 chrXII:687675-688140 7.68e-10 11_[-2(2.72e-08)]_21_[-1(3.05e-09)]_\ 24 chrXIII:290573-290978 2.05e-01 100 chrVIII:452262-452963 3.87e-01 100 chrXVI:775634-776001 3.06e-06 47_[-1(6.88e-09)]_30 chrIII:310305-310829 9.05e-01 100 chrXII:728239-728496 6.54e-01 100 chrXIII:572786-573181 7.81e-04 [-1(2.68e-07)]_77 chrII:405690-406154 3.13e-12 4_[+1(5.49e-09)]_19_[+2(4.10e-11)]_\ 33 chrX:118860-118960 8.69e-01 100 chrXIII:699305-699829 2.26e-01 100 chrIV:1016938-1017478 1.07e-06 58_[-2(8.01e-11)]_21 chrXIV:174221-174622 2.25e-03 27_[-3(3.44e-07)]_44 chrIV:1021601-1022044 2.38e-01 100 chrXI:108391-108915 4.27e-01 100 chrXII:819269-819420 2.68e-01 100 chrXII:975839-976277 1.03e-04 26_[-1(1.94e-08)]_51 chrXII:806824-807348 8.82e-01 100 chrIV:1095242-1095626 1.81e-05 55_[-1(1.94e-08)]_22 chrVIII:116015-116373 1.81e-05 13_[-1(3.45e-09)]_64 chrIII:120522-121046 6.75e-01 100 chrXV:798498-798694 8.58e-01 100 chrXII:729357-729881 7.01e-01 100 chrXV:418316-418840 8.96e-01 100 chrVII:804829-805353 4.24e-01 100 chrXIV:569653-570177 3.25e-14 11_[-2(2.36e-11)]_21_[-1(7.87e-11)]_\ 24 chrXIV:585816-586535 6.99e-01 100 chrXII:1029696-1030074 9.12e-02 100 chrVII:480111-481885 1.38e-01 100 chrIV:1362167-1362691 2.26e-01 100 chrIII:127553-127893 9.93e-05 41_[+1(4.48e-08)]_36 chrII:407647-408171 1.13e-01 100 chrXV:900064-900392 1.40e-02 59_[+1(4.49e-05)]_18 chrVIII:518716-518854 2.24e-01 100 chrVII:879701-879927 6.29e-01 100 chrXII:806756-806981 4.71e-01 100 chrI:210900-211201 2.87e-01 100 chrVII:399249-399773 5.81e-01 100 chrXII:11112-11367 9.68e-01 100 chrV:423468-423692 1.66e-02 28_[-3(7.89e-06)]_43 chrVII:534666-534838 6.01e-01 100 chrXIII:301627-302151 4.93e-01 100 chrXVI:645372-645630 5.98e-01 100 chrVIII:388795-389188 4.30e-05 32_[-1(7.67e-09)]_21_[-1(8.17e-05)]_\ 1 chrVII:366117-366731 6.08e-01 100 chrXIII:289692-289925 3.83e-02 32_[+3(2.13e-05)]_39 chrXII:263077-263611 3.13e-05 7_[-3(1.97e-09)]_64 chrVII:921781-922024 5.94e-04 21_[-3(2.61e-06)]_50 chrXV:891185-891709 6.05e-02 100 chrXI:645280-645764 9.45e-01 100 chrIV:1269884-1270167 1.66e-01 100 chrXVI:109917-110138 5.32e-01 100 chrXIV:102543-102972 1.85e-09 7_[+1(1.94e-08)]_21_[+2(1.33e-08)]_\ 28 chrXVI:412328-412852 1.93e-01 100 chrXI:109594-109997 2.31e-01 100 chrXV:254574-254998 1.28e-03 70_[-3(6.08e-07)]_1 chrIV:946134-946504 2.87e-01 100 chrIII:293728-294252 4.77e-01 100 chrVII:437720-438244 6.36e-01 100 chrXV:896557-896833 3.27e-02 100 chrIV:884144-884544 4.41e-05 65_[+1(7.67e-09)]_12 chrXVI:842767-843291 6.74e-01 100 chrII:405690-406142 3.13e-12 10_[+1(5.49e-09)]_19_[+2(4.10e-11)]_\ 27 chrXIII:372389-372719 6.46e-01 100 chrVII:794213-794646 2.95e-14 36_[+1(5.52e-11)]_20_[+2(2.85e-11)] chrXVI:585856-586129 7.58e-03 42_[+3(7.22e-06)]_29 chrXII:263799-264142 1.40e-01 100 chrVII:783894-784160 6.41e-01 100 chrXII:912194-912718 1.23e-02 11_[+3(1.11e-05)]_60 chrIV:589560-590084 2.29e-01 100 chrXV:1028728-1029076 7.09e-01 100 chrXI:140837-141297 3.99e-08 10_[-2(8.01e-11)]_69 chrVI:137286-137689 6.61e-05 58_[-2(1.33e-08)]_21 chrIV:541192-541845 8.96e-05 7_[-3(1.47e-07)]_64 chrXII:0-392 8.34e-01 100 chrXVI:582162-582410 9.50e-01 100 chrVII:876221-876706 1.97e-07 22_[+2(1.38e-11)]_57 chrIV:488566-489087 3.03e-09 30_[-2(4.64e-09)]_21_[-1(7.46e-08)]_\ 5 chrXVI:812857-813381 6.89e-01 100 chrII:301185-301547 1.87e-01 100 chrIV:556331-556670 3.90e-03 59_[-3(4.20e-06)]_12 chrXV:729732-730256 9.43e-01 100 chrII:143326-143850 2.97e-02 8_[-3(1.31e-05)]_63 chrXV:384757-385074 9.92e-02 100 chrIX:427098-427570 1.46e-03 12_[+3(1.47e-07)]_59 chrVIII:455662-455965 2.62e-01 100 chrVIII:562355-562577 7.21e-01 100 chrXIII:923612-923778 9.07e-01 100 chrVII:25361-25706 4.10e-01 100 chrX:608382-608482 5.82e-01 100 chrXII:737660-738184 6.98e-02 71_[+1(3.10e-05)]_6 chrXIII:507287-507419 8.94e-01 100 chrII:393607-394131 2.60e-01 100 chrXI:578848-579251 2.16e-07 30_[+2(6.75e-11)]_49 chrIV:505358-505882 9.18e-01 100 chrXIII:665374-665898 4.15e-01 100 chrXVI:804513-804653 6.68e-01 100 chrIV:465164-465526 8.95e-01 100 chrXV:980457-981013 1.50e-06 71_[+2(2.34e-10)]_8 chrIX:256587-257111 4.35e-01 100 chrXV:788579-789103 4.42e-01 100 chrVII:920885-921057 5.30e-01 100 chrVII:287239-287663 3.12e-02 32_[-1(3.10e-05)]_45 chrIV:1080638-1080866 2.61e-01 100 chrVI:162043-162399 1.97e-04 55_[+1(3.42e-08)]_22 chrXII:708140-708456 6.12e-02 16_[-3(2.13e-05)]_55 chrIV:1013025-1013401 4.45e-03 61_[-3(1.29e-06)]_10 chrIV:520760-521141 1.30e-02 70_[+1(1.67e-05)]_7 chrII:443470-443994 4.17e-02 100 chrXI:552264-552475 7.27e-01 100 chrVIII:361866-362390 9.79e-01 100 chrXII:734636-735067 9.20e-08 43_[+2(2.36e-11)]_36 chrX:349040-349140 1.21e-02 100 chrXII:369222-370307 7.35e-01 100 chrXVI:810410-810937 1.42e-04 51_[+1(4.48e-08)]_26 chrXV:911531-911812 9.59e-01 100 chrV:79405-79671 1.18e-01 20_[-3(4.84e-05)]_51 chrVII:738911-739290 3.58e-07 70_[+1(1.39e-11)]_7 chrXIV:628653-629020 4.70e-03 17_[+3(6.08e-07)]_54 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************