Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.1385 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.082016 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.143572 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.039288 Invoking: fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/seqs-sampled Finished invoke: name: sample_seqs status: 0 time: 0.105431 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background Finished invoke: name: bg status: 0 time: 0.053357 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 621.91757 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/seqs-shuffled Finished invoke: name: dreme status: 0 time: 221.101475 Invoking: centrimo -seqlen 810 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.232012 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.645109 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background -primary TCTTB /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 2.285919 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background -primary GGTAD /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 2.822007 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background -primary RAMRAWRAWRAAGAARAVAAD /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 2.237104 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background -primary GCTKCY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 2.25745 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background -primary CCAAAK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 2.350723 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background -primary ACCABC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 2.159671 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background -primary TGATR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 2.967924 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background -primary GTRTGGAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.506982 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background -primary ATGGAAAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.393442 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background -primary AAVGTTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 1.463465 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background -primary TGACTCYA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo11 status: 0 time: 0.474087 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background -primary TATRTRTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo12 status: 0 time: 1.272058 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background -primary CCTSTAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo13 status: 0 time: 0.357956 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background -primary CAATGGCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo14 status: 0 time: 0.469456 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background -primary CAGCAGW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo15 status: 0 time: 1.017176 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/spamo_out_16 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background -primary ACARGWGRKCTGBTGAWHTKASMCAARAAS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo16 status: 0 time: 0.318533 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/spamo_out_17 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background -primary CTACWAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo17 status: 0 time: 0.894492 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/spamo_out_18 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background -primary CGAYGAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo18 status: 0 time: 0.774383 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/spamo_out_19 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background -primary KACAGTAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo19 status: 0 time: 0.483724 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/spamo_out_20 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background -primary ACCAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo20 status: 0 time: 2.685733 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/spamo_out_21 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background -primary CCAAKTC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo21 status: 0 time: 1.157078 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/spamo_out_22 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background -primary TGYTCAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo22 status: 0 time: 1.429668 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/spamo_out_23 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background -primary TGTTGTTR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo23 status: 0 time: 0.862918 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background --motif TCTTB /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa Finished invoke: name: fimo1 status: 0 time: 1.127011 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background --motif GGTAD /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa Finished invoke: name: fimo2 status: 0 time: 1.122907 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background --motif RAMRAWRAWRAAGAARAVAAD /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa Finished invoke: name: fimo3 status: 0 time: 1.522689 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background --motif GCTKCY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa Finished invoke: name: fimo4 status: 0 time: 1.156858 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background --motif CCAAAK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa Finished invoke: name: fimo5 status: 0 time: 1.144271 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background --motif ACCABC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa Finished invoke: name: fimo6 status: 0 time: 1.153055 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background --motif TGATR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa Finished invoke: name: fimo7 status: 0 time: 1.118737 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background --motif GTRTGGAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa Finished invoke: name: fimo8 status: 0 time: 1.20387 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background --motif ATGGAAAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa Finished invoke: name: fimo9 status: 0 time: 1.17662 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background --motif AAVGTTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa Finished invoke: name: fimo10 status: 0 time: 1.129022 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background --motif TGACTCYA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa Finished invoke: name: fimo11 status: 0 time: 1.190321 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background --motif TATRTRTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa Finished invoke: name: fimo12 status: 0 time: 1.179054 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background --motif CCTSTAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa Finished invoke: name: fimo13 status: 0 time: 1.215972 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background --motif CAATGGCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa Finished invoke: name: fimo14 status: 0 time: 1.199691 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background --motif CAGCAGW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa Finished invoke: name: fimo15 status: 0 time: 1.149977 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/fimo_out_16 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background --motif ACARGWGRKCTGBTGAWHTKASMCAARAAS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa Finished invoke: name: fimo16 status: 0 time: 1.459735 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/fimo_out_17 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background --motif CTACWAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa Finished invoke: name: fimo17 status: 0 time: 1.11979 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/fimo_out_18 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background --motif CGAYGAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa Finished invoke: name: fimo18 status: 0 time: 1.129012 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/fimo_out_19 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background --motif KACAGTAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa Finished invoke: name: fimo19 status: 0 time: 1.384405 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/fimo_out_20 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background --motif ACCAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa Finished invoke: name: fimo20 status: 0 time: 1.151681 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/fimo_out_21 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background --motif CCAAKTC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa Finished invoke: name: fimo21 status: 0 time: 1.122559 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/fimo_out_22 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background --motif TGYTCAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa Finished invoke: name: fimo22 status: 0 time: 1.108665 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/fimo_out_23 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background --motif TGTTGTTR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/BY4741--RPB2.fa Finished invoke: name: fimo23 status: 0 time: 1.173354 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/summary.tsv Finished invoke: name: summary status: 0 time: 0.233328 Done