******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:45411-46831 1.0000 100 chrXIV:240883-241482 1.0000 100 chrIV:1295361-1295710 1.0000 100 chrIV:1354362-1355749 1.0000 100 chrVII:805986-807921 1.0000 100 chrXIII:650788-653052 1.0000 100 chrXIII:23568-26102 1.0000 100 chrIV:590388-591226 1.0000 100 chrIV:1265909-1266591 1.0000 100 chrVII:364716-366882 1.0000 100 chrV:460113-461846 1.0000 100 chrIII:222542-222746 1.0000 100 chrIX:316556-318402 1.0000 100 chrXIII:218995-221118 1.0000 100 chrVII:56372-57518 1.0000 100 chrXIII:122797-124395 1.0000 100 chrXV:547876-548479 1.0000 100 chrXIV:23784-27635 1.0000 100 chrVIII:491684-493549 1.0000 100 chrXVI:641827-643798 1.0000 100 chrXII:587452-587856 1.0000 100 chrVII:555572-557704 1.0000 100 chrXV:832062-832982 1.0000 100 chrVII:915622-915995 1.0000 100 chrXIV:720593-723420 1.0000 100 chrIV:1328639-1331307 1.0000 100 chrXI:100161-107756 1.0000 100 chrVII:599209-601555 1.0000 100 chrV:266135-268427 1.0000 100 chrXIV:508308-508845 1.0000 100 chrXVI:64435-66914 1.0000 100 chrXVI:514181-517294 1.0000 100 chrXV:841531-843071 1.0000 100 chrXVI:701676-702452 1.0000 100 chrXI:141162-143146 1.0000 100 chrVII:1021254-1022019 1.0000 100 chrIII:176900-179001 1.0000 100 chrXVI:350193-352627 1.0000 100 chrXIV:215599-217351 1.0000 100 chrXIII:732220-733596 1.0000 100 chrXIII:555801-556297 1.0000 100 chrXIV:439662-440472 1.0000 100 chrX:120144-120244 1.0000 100 chrXII:515239-516954 1.0000 100 chrXVI:104582-105010 1.0000 100 chrII:396706-397990 1.0000 100 chrVII:901381-902191 1.0000 100 chrXV:736897-737707 1.0000 100 chrX:189891-189991 1.0000 100 chrXIII:671254-675069 1.0000 100 chrXII:123887-124697 1.0000 100 chrVII:920356-922192 1.0000 100 chrXVI:340708-341326 1.0000 100 chrXV:866871-868302 1.0000 100 chrXII:500939-501388 1.0000 100 chrIV:627719-628142 1.0000 100 chrXIV:402131-403097 1.0000 100 chrII:376104-378754 1.0000 100 chrIV:308201-310678 1.0000 100 chrV:406545-409344 1.0000 100 chrVII:254360-254907 1.0000 100 chrXII:363090-363534 1.0000 100 chrX:381143-381243 1.0000 100 chrIV:1021381-1022473 1.0000 100 chrXI:551289-552770 1.0000 100 chrXV:887878-888174 1.0000 100 chrXII:590378-590663 1.0000 100 chrXVI:119846-120656 1.0000 100 chrVII:52170-52785 1.0000 100 chrXV:589275-589978 1.0000 100 chrXIII:755660-755943 1.0000 100 chrIV:138945-139647 1.0000 100 chrXV:822187-822604 1.0000 100 chrXIII:222420-224052 1.0000 100 chrVIII:234936-235746 1.0000 100 chrXII:201494-202852 1.0000 100 chrV:100528-102725 1.0000 100 chrXVI:136222-136828 1.0000 100 chrX:648813-648913 1.0000 100 chrIV:355069-357149 1.0000 100 chrXII:653192-653565 1.0000 100 chrIV:1324789-1325169 1.0000 100 chrXV:418404-419214 1.0000 100 chrXIV:343176-343658 1.0000 100 chrV:281954-284494 1.0000 100 chrIV:116082-117397 1.0000 100 chrVII:398358-400866 1.0000 100 chrXIV:658120-661984 1.0000 100 chrV:298680-302205 1.0000 100 chrIV:1046777-1047587 1.0000 100 chrII:556067-558674 1.0000 100 chrXII:253604-255438 1.0000 100 chrXV:89357-89840 1.0000 100 chrXV:615890-616572 1.0000 100 chrXV:21948-22535 1.0000 100 chrXII:669051-669608 1.0000 100 chrXVI:403363-403685 1.0000 100 chrXII:836854-839589 1.0000 100 chrXIV:181613-182219 1.0000 100 chrIII:229432-230812 1.0000 100 chrVIII:384023-384754 1.0000 100 chrXV:413983-414588 1.0000 100 chrXIII:557210-558573 1.0000 100 chrIV:220721-222087 1.0000 100 chrIV:603356-603732 1.0000 100 chrXII:445376-446186 1.0000 100 chrVIII:126299-127940 1.0000 100 chrIV:769470-770556 1.0000 100 chrIV:1384888-1385796 1.0000 100 chrIII:15182-17087 1.0000 100 chrXVI:741416-741624 1.0000 100 chrX:410925-411025 1.0000 100 chrXIII:251423-253187 1.0000 100 chrIV:992428-992968 1.0000 100 chrV:433066-434404 1.0000 100 chrXII:855624-857707 1.0000 100 chrIV:194186-194659 1.0000 100 chrXII:658443-659700 1.0000 100 chrIV:1104673-1105197 1.0000 100 chrXV:80161-83207 1.0000 100 chrXV:92947-94612 1.0000 100 chrXIII:388588-391256 1.0000 100 chrXIV:347387-347722 1.0000 100 chrX:125173-125273 1.0000 100 chrXV:503052-503732 1.0000 100 chrX:440575-440675 1.0000 100 chrV:70099-70583 1.0000 100 chrIV:1399423-1400006 1.0000 100 chrXII:648661-651401 1.0000 100 chrXVI:466322-466685 1.0000 100 chrXII:522439-523758 1.0000 100 chrVI:82309-84516 1.0000 100 chrVII:970291-974244 1.0000 100 chrIV:525224-527541 1.0000 100 chrXII:799368-799987 1.0000 100 chrIV:1260614-1260993 1.0000 100 chrIV:337874-338644 1.0000 100 chrVII:959722-961721 1.0000 100 chrXII:1026934-1027436 1.0000 100 chrXIII:425908-426632 1.0000 100 chrXII:662856-665110 1.0000 100 chrIV:330861-333384 1.0000 100 chrIV:322021-323825 1.0000 100 chrVII:1057167-1059120 1.0000 100 chrIV:488782-489332 1.0000 100 chrIII:28402-29206 1.0000 100 chrVIII:157339-157813 1.0000 100 chrXII:720331-721649 1.0000 100 chrXV:547876-548470 1.0000 100 chrXII:809584-816209 1.0000 100 chrV:302517-303608 1.0000 100 chrII:606064-607655 1.0000 100 chrVII:479041-483186 1.0000 100 chrIV:937428-937916 1.0000 100 chrII:604279-605887 1.0000 100 chrVII:640649-641465 1.0000 100 chrXV:29081-32040 1.0000 100 chrIX:98071-99662 1.0000 100 chrXII:825571-826381 1.0000 100 chrXIII:270987-271493 1.0000 100 chrVII:641421-642162 1.0000 100 chrXVI:732883-733496 1.0000 100 chrXV:896315-898534 1.0000 100 chrIV:507593-509943 1.0000 100 chrVI:52845-55057 1.0000 100 chrIV:812061-813348 1.0000 100 chrXIII:161775-164504 1.0000 100 chrIII:169279-169852 1.0000 100 chrX:213389-213489 1.0000 100 chrIX:23327-25599 1.0000 100 chrXVI:134715-135991 1.0000 100 chrVI:130818-131467 1.0000 100 chrIV:626411-626848 1.0000 100 chrIV:471635-472093 1.0000 100 chrII:79587-80087 1.0000 100 chrX:140551-140651 1.0000 100 chrXVI:718267-719656 1.0000 100 chrII:483648-484116 1.0000 100 chrX:75717-75817 1.0000 100 chrXVI:465663-466001 1.0000 100 chrXII:897919-899843 1.0000 100 chrXVI:785860-787904 1.0000 100 chrX:90484-90584 1.0000 100 chrXIV:289233-289714 1.0000 100 chrXVI:253883-254519 1.0000 100 chrXV:619464-624824 1.0000 100 chrIV:133230-133907 1.0000 100 chrVIII:381256-382973 1.0000 100 chrIV:1169888-1170393 1.0000 100 chrXIV:413332-417046 1.0000 100 chrV:138548-140630 1.0000 100 chrXV:254061-255161 1.0000 100 chrIX:68497-69939 1.0000 100 chrXII:728650-730784 1.0000 100 chrIV:809805-810737 1.0000 100 chrXII:262925-264401 1.0000 100 chrVIII:160335-161002 1.0000 100 chrXIV:663499-663965 1.0000 100 chrVIII:514655-514877 1.0000 100 chrXV:1006464-1007101 1.0000 100 chrXII:903476-904877 1.0000 100 chrVII:783679-785346 1.0000 100 chrVII:438804-440142 1.0000 100 chrVIII:384958-387110 1.0000 100 chrVII:372038-372526 1.0000 100 chrXIII:551723-553324 1.0000 100 chrXI:557092-557756 1.0000 100 chrXII:707913-710622 1.0000 100 chrIII:137445-139511 1.0000 100 chrXII:636479-640397 1.0000 100 chrIV:913843-915020 1.0000 100 chrXVI:822401-824734 1.0000 100 chrX:519170-519270 1.0000 100 chrII:305044-305438 1.0000 100 chrVIII:147480-148907 1.0000 100 chrXII:845089-845570 1.0000 100 chrXII:927742-928346 1.0000 100 chrXII:657431-658130 1.0000 100 chrVII:696950-697670 1.0000 100 chrV:59049-59487 1.0000 100 chrXV:409246-410204 1.0000 100 chrIV:1180858-1181171 1.0000 100 chrX:622173-622273 1.0000 100 chrXVI:412150-413603 1.0000 100 chrII:392720-395551 1.0000 100 chrXVI:108471-114642 1.0000 100 chrVII:255038-255776 1.0000 100 chrXVI:56209-56616 1.0000 100 chrIV:43815-44771 1.0000 100 chrVII:474001-474682 1.0000 100 chrXIII:892412-895667 1.0000 100 chrX:464011-464111 1.0000 100 chrVII:824424-825023 1.0000 100 chrVII:882193-884162 1.0000 100 chrXIII:623601-624411 1.0000 100 chrIV:1441042-1442365 1.0000 100 chrV:339366-342394 1.0000 100 chrIV:117453-118418 1.0000 100 chrVIII:34266-36361 1.0000 100 chrXII:867292-868931 1.0000 100 chrX:289578-289678 1.0000 100 chrII:290740-291370 1.0000 100 chrX:187611-187711 1.0000 100 chrIII:64364-65311 1.0000 100 chrXVI:207820-208506 1.0000 100 chrVII:373851-374549 1.0000 100 chrVII:786862-788381 1.0000 100 chrIV:1359706-1361296 1.0000 100 chrVIII:211263-211845 1.0000 100 chrXVI:377645-378624 1.0000 100 chrVII:179884-180357 1.0000 100 chrVII:800966-802005 1.0000 100 chrIX:156986-157536 1.0000 100 chrXV:876635-877927 1.0000 100 chrVII:825793-826444 1.0000 100 chrXI:308986-310040 1.0000 100 chrXIV:253046-254295 1.0000 100 chrXV:159094-160911 1.0000 100 chrII:427383-429040 1.0000 100 chrVII:277317-279132 1.0000 100 chrXII:1002091-1002877 1.0000 100 chrV:269008-270371 1.0000 100 chrV:432371-432953 1.0000 100 chrXV:743274-743911 1.0000 100 chrVI:222787-223985 1.0000 100 chrXI:109055-110578 1.0000 100 chrIV:929034-930562 1.0000 100 chrXIV:623186-623996 1.0000 100 chrXIV:505329-507583 1.0000 100 chrII:168200-169788 1.0000 100 chrVII:130855-131461 1.0000 100 chrII:372225-372728 1.0000 100 chrIV:489396-491255 1.0000 100 chrXV:815504-816281 1.0000 100 chrXII:944170-944572 1.0000 100 chrXII:545555-548045 1.0000 100 chrVII:345708-346775 1.0000 100 chrV:85367-86733 1.0000 100 chrXII:1028643-1030380 1.0000 100 chrVIII:503998-505776 1.0000 100 chrXII:265965-266487 1.0000 100 chrXI:386874-387669 1.0000 100 chrX:462561-462661 1.0000 100 chrXVI:692394-695171 1.0000 100 chrVIII:104014-105516 1.0000 100 chrXVI:653925-655484 1.0000 100 chrIV:785633-786516 1.0000 100 chrXV:307259-308070 1.0000 100 chrV:332165-332636 1.0000 100 chrIV:1357162-1358173 1.0000 100 chrXVI:451457-452638 1.0000 100 chrXIII:362735-363177 1.0000 100 chrVII:308053-308744 1.0000 100 chrXIV:302449-303845 1.0000 100 chrIV:628174-628621 1.0000 100 chrXVI:143322-143905 1.0000 100 chrVII:87184-88438 1.0000 100 chrXV:882480-883543 1.0000 100 chrI:65087-68053 1.0000 100 chrX:453205-453305 1.0000 100 chrXVI:247467-247958 1.0000 100 chrXVI:153861-154499 1.0000 100 chrVII:957223-957801 1.0000 100 chrXVI:730796-731502 1.0000 100 chrXVI:376831-377539 1.0000 100 chrVII:667475-667679 1.0000 100 chrX:154282-154382 1.0000 100 chrXIV:234065-234820 1.0000 100 chrXV:543373-544183 1.0000 100 chrXI:338044-339040 1.0000 100 chrXV:19584-21380 1.0000 100 chrXII:918907-921881 1.0000 100 chrVII:141557-142025 1.0000 100 chrXV:315448-316390 1.0000 100 chrX:285534-285634 1.0000 100 chrIX:259559-260107 1.0000 100 chrXII:734863-737510 1.0000 100 chrV:197757-198472 1.0000 100 chrIV:340032-341432 1.0000 100 chrII:452499-453805 1.0000 100 chrXVI:404670-406503 1.0000 100 chrII:608568-609160 1.0000 100 chrXVI:117657-118106 1.0000 100 chrXV:60259-61337 1.0000 100 chrIV:997335-998145 1.0000 100 chrXI:430435-431563 1.0000 100 chrVIII:119530-122053 1.0000 100 chrIV:144055-144605 1.0000 100 chrII:413752-415451 1.0000 100 chrIV:1292285-1293095 1.0000 100 chrXV:960698-962649 1.0000 100 chrIV:173776-174330 1.0000 100 chrVIII:374157-375148 1.0000 100 chrV:235247-237319 1.0000 100 chrXV:883902-884512 1.0000 100 chrXV:677756-679014 1.0000 100 chrIII:120525-122562 1.0000 100 chrVIII:236500-237048 1.0000 100 chrXIII:886765-889222 1.0000 100 chrXIV:281868-283913 1.0000 100 chrV:510066-511756 1.0000 100 chrXIV:620946-621479 1.0000 100 chrIV:712954-713430 1.0000 100 chrXII:930512-932022 1.0000 100 chrX:663475-663575 1.0000 100 chrV:401260-402070 1.0000 100 chrXIV:229299-231126 1.0000 100 chrVII:846484-848524 1.0000 100 chrIII:56411-58900 1.0000 100 chrXI:282645-285045 1.0000 100 chrV:93249-94059 1.0000 100 chrXVI:280455-281800 1.0000 100 chrXVI:810296-810816 1.0000 100 chrIII:194093-194601 1.0000 100 chrXV:91679-93115 1.0000 100 chrVII:648572-649700 1.0000 100 chrIV:163383-163697 1.0000 100 chrXIII:700277-701087 1.0000 100 chrVII:802077-805474 1.0000 100 chrXVI:139248-139713 1.0000 100 chrXV:415907-416360 1.0000 100 chrXII:231849-234433 1.0000 100 chrXVI:251787-252942 1.0000 100 chrV:362530-363462 1.0000 100 chrXV:505551-507162 1.0000 100 chrIV:1202107-1202890 1.0000 100 chrX:293000-293100 1.0000 100 chrXII:196511-197587 1.0000 100 chrIV:1322308-1323262 1.0000 100 chrVII:870008-870818 1.0000 100 chrIV:129738-130758 1.0000 100 chrIII:144401-144862 1.0000 100 chrXVI:297330-298693 1.0000 100 chrV:155729-156609 1.0000 100 chrVII:698717-699267 1.0000 100 chrXIV:256481-256964 1.0000 100 chrXIV:290413-291202 1.0000 100 chrXV:889397-890826 1.0000 100 chrIV:766269-766862 1.0000 100 chrIV:1240744-1242045 1.0000 100 chrIV:555254-556792 1.0000 100 chrXI:107985-108403 1.0000 100 chrXI:163150-164693 1.0000 100 chrVII:77404-78307 1.0000 100 chrXIV:63180-64803 1.0000 100 chrII:373342-376007 1.0000 100 chrXII:948948-949567 1.0000 100 chrII:565234-565857 1.0000 100 chrXIII:159137-160289 1.0000 100 chrIV:1267256-1267904 1.0000 100 chrXIV:158972-159782 1.0000 100 chrII:611798-614318 1.0000 100 chrXII:805606-807271 1.0000 100 chrXIV:463138-463948 1.0000 100 chrIV:155389-156086 1.0000 100 chrVII:23691-25930 1.0000 100 chrXVI:406422-408018 1.0000 100 chrXVI:802773-803174 1.0000 100 chrIV:1168238-1168885 1.0000 100 chrIV:205028-205733 1.0000 100 chrXIV:500765-503408 1.0000 100 chrXV:880320-880759 1.0000 100 chrVII:541422-541921 1.0000 100 chrXIV:480972-481441 1.0000 100 chrXV:135745-136898 1.0000 100 chrVII:95588-96682 1.0000 100 chrIV:1466005-1468702 1.0000 100 chrIV:118261-118957 1.0000 100 chrVIII:543394-543870 1.0000 100 chrIV:465890-466700 1.0000 100 chrXV:890686-891151 1.0000 100 chrV:27461-29955 1.0000 100 chrII:170786-171277 1.0000 100 chrXI:158403-159725 1.0000 100 chrII:138254-140118 1.0000 100 chrIV:1292089-1292541 1.0000 100 chrXIII:549765-551413 1.0000 100 chrXIV:61472-63137 1.0000 100 chrV:206386-207337 1.0000 100 chrXIII:354631-354973 1.0000 100 chrII:82699-84187 1.0000 100 chrXIV:575000-576286 1.0000 100 chrXV:378397-379207 1.0000 100 chrXVI:794774-796208 1.0000 100 chrVII:935711-936234 1.0000 100 chrXVI:75219-76459 1.0000 100 chrVII:252689-253194 1.0000 100 chrXII:925349-926013 1.0000 100 chrIV:571962-572451 1.0000 100 chrXII:568336-571062 1.0000 100 chrXI:591097-591856 1.0000 100 chrIV:592603-592994 1.0000 100 chrV:332885-333205 1.0000 100 chrIX:96604-97689 1.0000 100 chrXII:520225-520654 1.0000 100 chrVII:610300-612103 1.0000 100 chrIV:240425-241235 1.0000 100 chrVII:306838-307515 1.0000 100 chrII:429393-430517 1.0000 100 chrIII:217928-218582 1.0000 100 chrIV:1162528-1164834 1.0000 100 chrIV:1006174-1006864 1.0000 100 chrX:450764-450864 1.0000 100 chrXV:407507-408403 1.0000 100 chrII:122127-122682 1.0000 100 chrXIV:755278-759335 1.0000 100 chrIV:215298-217372 1.0000 100 chrXII:242007-243921 1.0000 100 chrV:303746-306145 1.0000 100 chrVIII:499568-500244 1.0000 100 chrIV:1057597-1058024 1.0000 100 chrXII:505922-508022 1.0000 100 chrXV:797226-798839 1.0000 100 chrVII:910587-910960 1.0000 100 chrVII:473322-473532 1.0000 100 chrXVI:432332-434555 1.0000 100 chrXIII:241452-241947 1.0000 100 chrIV:1114564-1115111 1.0000 100 chrV:503916-505419 1.0000 100 chrV:396559-398094 1.0000 100 chrXVI:741194-741598 1.0000 100 chrXIII:57276-57899 1.0000 100 chrXII:128707-129351 1.0000 100 chrXV:722606-725785 1.0000 100 chrXVI:866384-866802 1.0000 100 chrVII:1048219-1050257 1.0000 100 chrXV:304495-306189 1.0000 100 chrV:337234-337785 1.0000 100 chrIV:1049503-1050313 1.0000 100 chrIV:1239180-1240335 1.0000 100 chrIV:232102-232347 1.0000 100 chrXII:826766-827241 1.0000 100 chrXIV:576459-577586 1.0000 100 chrXVI:96068-98829 1.0000 100 chrVII:77389-78307 1.0000 100 chrX:435373-435473 1.0000 100 chrIII:194233-195043 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 477 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 47700 N= 477 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.314 C 0.186 G 0.186 T 0.314 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--RPB2/background): A 0.310 C 0.190 G 0.190 T 0.310 ******************************************************************************** ******************************************************************************** MOTIF RAMRAWRAWRAAGAARAVAAD MEME-1 width = 21 sites = 86 llr = 836 E-value = 1.7e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAMRAWRAWRAAGAARAVAAD MEME-1 Description -------------------------------------------------------------------------------- Simplified A 485475375586267683875 pos.-specific C :12::::2:::2::1:12::: probability G 6:16:252152:63:413213 matrix T ::2:232:4::22:2::1:22 bits 2.4 2.2 1.9 1.7 Relative 1.4 Entropy 1.2 * * * (14.0 bits) 1.0 ** * ** * * 0.7 ** * ** ** ***** * 0.5 ** ** ** ** ***** *** 0.2 ********************* 0.0 --------------------- Multilevel GAAGAAGAAAAAGAAAAAAAA consensus A CATTA TG T GTG G TG sequence T C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAMRAWRAWRAAGAARAVAAD MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrVII:373851-374549 + 48 4.39e-09 TTGACTTTTT AAAGAAGAAAAAGAAAACAAT AGTATACATT chrX:140551-140651 + 15 7.20e-09 GTGAAAAGAA GAAAAAGAAGAAGGAGAAGAG GGAGAAGAGG chrXVI:251787-252942 - 26 1.79e-08 AGTAAGGGCC GACGAGGAAGAAGAAGAAGAT GAAGATGATG chrXI:386874-387669 - 41 2.20e-08 ATACAATAGA GAAGAAAATGAAGAAAGGAAA AGTTGGTTCT chrXII:903476-904877 - 50 2.20e-08 CTTGGTGGAA GAAGAAGAGGAAGAAGAGGAT TCGGTGGAAG chrIV:1239180-1240335 + 49 1.78e-07 TGATGCTGCT GAAGAAGAAAAGGAAGAAGAA GCTAAGGAAG chrXIII:159137-160289 - 52 1.78e-07 GAACTAGTGG GAAATGGAAAGAGAAAAGAAA AGAGTATGAA chrVIII:384958-387110 - 35 2.11e-07 TGATGTTTCA GAAGATGAAGATGAAGAAAGT TGGGAAGAGA chrXV:797226-798839 - 44 3.46e-07 GACACTTGCT GCAGTAGATGATGGAGACAAA GTAGTGGAGT chrIV:507593-509943 - 41 3.46e-07 ACAAGAACAT AATAATGCTGAAGAAAACAAG GAATGTCAAC chrV:206386-207337 + 71 4.05e-07 AATTAATCTG AAAGAAAGTGAAGATAAGAAA CGGGCTAGG chrIV:322021-323825 + 11 4.73e-07 CAGAAAGAGA AACGAAGAAGAAGACGCCAAG AACCCATTGT chrXVI:741416-741624 - 4 5.52e-07 AAATACCAGG AAAATGGATGAAGAAAAGGAA AGG chrIV:155389-156086 + 33 6.42e-07 AGAGTAGAAA GACAAAAATAAATAAAAAAAA ACTGAAGCAG chrXIV:505329-507583 - 50 6.42e-07 TAACGGTAAG AAAGTTGAAAACGAAAGGAAG ATCCTAGAAG chrII:122127-122682 + 68 7.44e-07 TAAAATCTCA AAAGAGGGAAAAAAAAAAAAG AGGGATAATT chrV:155729-156609 - 9 9.95e-07 AAACTTGCCT GAAAAAAAAGAATAAAAAATA AAAGAAAA chrIV:627719-628142 - 62 1.73e-06 GCGAACTTTT GAAATTGAGAATGGAAAAAAG TCCTGAAGAT chrXI:338044-339040 - 16 1.98e-06 TGCTAAGAAG GAAAAATATGAAAAAAAGGAG CAACAACACT chrVII:957223-957801 - 80 1.98e-06 . GACGATGATGACGACAATAAT ACCAGCAACA chrXIII:251423-253187 - 31 1.98e-06 GGTAATGACT GATAAATATGACGAAAACAAT CCTGAACATA chrIV:308201-310678 - 44 2.25e-06 ATGAAATTGA ACAGATAAAAAAGAAGGAAAA TACAAAAATT chrXI:109055-110578 - 34 2.56e-06 AATTGAAAAA GATGAAACTAGCGGAAAGAAA TATCAAGTTT chrIV:1384888-1385796 - 17 2.91e-06 TGTAGCGGAA AAGGAAGATAAAGGAGGGAGA ACAACGTTTT chrXIV:181613-182219 - 53 2.91e-06 AATTCTGAAA GAAGCGGATAAGGAAAAGAAG TTGGAATTGT chrVII:648572-649700 + 9 4.20e-06 AAAAATAA AAAGAAGGCGGTGAAAACAAA AAGAATATTA chrXV:505551-507162 + 36 4.74e-06 TTTATAGATC GACGTTGCTGGTGGTAAGAAG GCTTTGGCCA chrVIII:514655-514877 - 79 5.98e-06 A AACAAAGAAAAAAGAAATGAG AGTGAATTTG chrX:213389-213489 - 22 5.98e-06 TGTTTTGTTA GATGAAACAAGCGATAAAAAG TTAATTAGAA chrVIII:126299-127940 - 15 5.98e-06 AGCTGTGTAA AAAAAGGAAGGAAAAGAAATA GTTAGTAAAT chrX:648813-648913 + 8 5.98e-06 CAATAAG GATGATGGGAAAAAAAAGATA ATTTTTTTTT chrIV:1265909-1266591 - 43 5.98e-06 AAGTCCAAAA AAAAAAAAGAACGAAAAAGAA ACAACTTTTA chrVII:541422-541921 - 56 6.71e-06 AAGATACCAT GAAGATTGAGAATGAGAAATA TGTGAATGTT chrIX:156986-157536 + 44 6.71e-06 TTATAACATG GATGAAAATAGAAAAGAAATA TAGAAGTAAA chrII:290740-291370 - 6 6.71e-06 TATGTCCCCA GAAGATGCTGAAGAAGAATTG AAGAA chrXV:254061-255161 + 15 9.35e-06 AGAAGCCGCT GAAGAATCTGACGACGACATG GGTTTCGGTT chrVII:77389-78307 - 20 1.04e-05 CTGATAGGAA ACCAATAAAAATGGAGAGAAT AGATAAGAAG chrVII:77404-78307 - 13 1.04e-05 CTGATAGGAA ACCAATAAAAATGGAGAGAAT AGATAAGAAG chrXV:159094-160911 - 19 1.04e-05 CTTGGGTATT GACGGTGGTGAAGGTAAGGAA GAATTATTCA chrXIV:663499-663965 + 63 1.16e-05 ATCTAAAAAA ACAAAAAAAAAAGATGGAAAG AGCGCATGTA chrXV:80161-83207 - 75 1.16e-05 AGCCA GTCGTAGGAAAAGGAAAAGAA TGAGTAGCAA chrV:281954-284494 + 39 1.16e-05 TTGCTTAGTA GAAGACGGTAAATGTGAAAAG CTGTTTTCTA chrX:187611-187711 - 78 1.28e-05 TG AATAATGGAAAATATGAAAAA AATAGAGGAA chrVI:82309-84516 - 75 1.28e-05 ACATT GATGATAATGGTAAAGACAAT ACAGCAAGTA chrXIV:343176-343658 + 23 1.28e-05 AAGCGTATAT ACTATATAAAAAGAAAACAAA AAAAATCAAT chrVII:825793-826444 + 37 1.42e-05 AGATATAACA GATGAAACTAATGAAGGTAAG ACAGGTCCAA chrIV:603356-603732 + 77 1.58e-05 AAATAGTATT GAAAAAGCTGAATGAGCAATA ATT chrXVI:403363-403685 - 40 1.74e-05 AAATGCGTCT GATAAGGCGAATGAAAATAAA AGTAATGCTA chrXV:887878-888174 - 69 1.74e-05 TCATTGAAGG GAAAAAGGTGACTGAAATATG ATTACCTGTC chrXIII:57276-57899 - 60 1.92e-05 GAGGTACCGA AACACAGAAAAAAGTAACAAG AAAACTCTCT chrXI:308986-310040 - 15 1.92e-05 CTCCAGCATT GACAATTAAAAATGTGAAAAT AAAACAGCTA chrX:90484-90584 + 6 1.92e-05 AAGAG AAAAGAAATAAAGAAGAAATG GGACATGCAA chrXIII:555801-556297 + 23 2.12e-05 GATGGCAATA GCGGAGTAAAAAGAAAATAAT TTCTTGGAGA chrIV:1357162-1358173 - 9 2.33e-05 ACAATTATTT GAAAAAGATGAATGCAGAAGA TGATCCTA chrV:510066-511756 + 31 2.56e-05 TGTTCACTTC GAAGAAGAAGGTGCTGCCAAG GAAGCTATTG chrVIII:160335-161002 + 16 2.56e-05 TATCTATTTC GAAAATAAAAAATAAGTGAAA AGAACGAAAT chrXIII:425908-426632 - 3 2.56e-05 TAATAGCTGA GTGGAAGAAAAAAAAAAAATA AA chrXV:832062-832982 - 45 2.56e-05 GCTACAGATA AATATAAATGAATGAAAGATA TCTCACTCGC chrIII:194093-194601 + 59 2.81e-05 TCATATATAT AAAGTTTAAAAAGGTACAAAG AATGCAGTAA chrVIII:236500-237048 - 49 2.81e-05 CCAAAAACAA AACGAAAAAAATATAAAAAAG TATGCCAATG chrIV:571962-572451 + 49 3.08e-05 GTAACTCAAA GTCGTATGAGGAGAAAAGAAA GAAGAACTTT chrII:82699-84187 - 41 3.08e-05 TAAGAAGCCT AAGAATGAAAAATATAAGATT GTGGAAAAAA chrVIII:147480-148907 + 71 3.08e-05 ATACATCAGA AAAGTTAGAGGAGACAGGAAA AAGTGAGCA chrVII:870008-870818 - 31 3.37e-05 GCTGCATAAA AACGTTGAGAATGAAGATATT GGTGAATTAT chrXVI:340708-341326 + 63 3.37e-05 ACGAACAAAA AAAGAAAATAAATTAAAAATA AAAGTAGTGT chrVII:901381-902191 - 37 3.37e-05 ATCACTGTCA AAAGTTGAAGAAAAAAAGTAT TTACTTGCCA chrII:565234-565857 + 51 4.02e-05 GTCATTTATG GATGCGAAAAAAGATGAAGTA ATTCAAGTGC chrXVI:432332-434555 + 41 4.38e-05 TTTGGTCTTT GACGATGCTAACATTAAGAAG ACTTTACCAA chrV:27461-29955 - 61 4.38e-05 TAAAGAATGC GATGAGTAGAGCGAAAAAGAT ACCTCTATCT chrII:452499-453805 + 78 4.38e-05 GAAATCTATC GAAGAAGCTGAAAGAGCCGGT AA chrIV:785633-786516 + 41 4.77e-05 TTTTGTCGTG AATAATGAAAAATCAAACGAA TTTGACAGTG chrXIII:623601-624411 + 6 4.77e-05 TGGGT ACCGAGGGAGAAGAATAGAAT GACTGAGGGC chrXV:615890-616572 - 2 4.77e-05 CGAAGAATCT GAAGATGACAGCGAAAGCGGA A chrV:362530-363462 - 71 5.19e-05 TAACGCATC GAGATAGAAGGCGAAAGTATG TGATATTTTC chrIV:1202107-1202890 + 51 5.64e-05 CTTAGATGAT AAAATAAATAATAAAAAGAGA TACGAAAGGC chrIII:56411-58900 - 33 5.64e-05 TACTTTGGCC GCCAAGGAAGGTGATAACGTT ACCGGTGAAG chrXII:799368-799987 + 35 6.12e-05 TTATAGTTGA GCAAATAAAGAATACAAAATT TATTCCAAAA chrXII:734863-737510 - 27 6.64e-05 GGATCGTAGA GATATCAAGAAAGGTGACAAG AATACTATCG chrV:266135-268427 + 55 6.64e-05 CTGCGGCAAA ACCGAAAATAGATGAACCAAA AGAAAGAACA chrX:519170-519270 + 61 8.39e-05 TAAGACTTCA GATATGTCTGAAGTAGACAAA CCGGCGTCTT chrIV:1114564-1115111 - 42 9.77e-05 GATATTTTCA GACATAGAAAATAGTAGCAGA TTATGGTTTT chrVIII:34266-36361 - 73 1.05e-04 CTTCGCT GACAAATACGATGAAGTCAAG AAGCACTGGG chrVII:783679-785346 + 77 1.05e-04 GATAGTTGAA GATGTCGGAGATGAAGATAGT GAG chrV:337234-337785 - 62 1.22e-04 CCTCCTCCCC ACGGAATAAAACTACAACAAG TTCTGTTATC chrV:70099-70583 + 66 1.22e-04 AGTGTAGAGT AAAGCTAAAAAGGACAAGATA AAGTGAAAAA chrIV:812061-813348 - 10 1.31e-04 ACCGTTTTCC AAGGAAGCTGGTGGTAGGGTA CCGTTTTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAMRAWRAWRAAGAARAVAAD MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:373851-374549 4.4e-09 47_[+1]_32 chrX:140551-140651 7.2e-09 14_[+1]_65 chrXVI:251787-252942 1.8e-08 25_[-1]_54 chrXI:386874-387669 2.2e-08 40_[-1]_39 chrXII:903476-904877 2.2e-08 49_[-1]_30 chrIV:1239180-1240335 1.8e-07 48_[+1]_31 chrXIII:159137-160289 1.8e-07 51_[-1]_28 chrVIII:384958-387110 2.1e-07 34_[-1]_45 chrXV:797226-798839 3.5e-07 43_[-1]_36 chrIV:507593-509943 3.5e-07 40_[-1]_39 chrV:206386-207337 4.1e-07 70_[+1]_9 chrIV:322021-323825 4.7e-07 10_[+1]_69 chrXVI:741416-741624 5.5e-07 3_[-1]_76 chrIV:155389-156086 6.4e-07 32_[+1]_47 chrXIV:505329-507583 6.4e-07 49_[-1]_30 chrII:122127-122682 7.4e-07 67_[+1]_12 chrV:155729-156609 9.9e-07 8_[-1]_71 chrIV:627719-628142 1.7e-06 61_[-1]_18 chrXI:338044-339040 2e-06 15_[-1]_64 chrVII:957223-957801 2e-06 79_[-1] chrXIII:251423-253187 2e-06 30_[-1]_49 chrIV:308201-310678 2.3e-06 43_[-1]_36 chrXI:109055-110578 2.6e-06 33_[-1]_46 chrIV:1384888-1385796 2.9e-06 16_[-1]_63 chrXIV:181613-182219 2.9e-06 52_[-1]_27 chrVII:648572-649700 4.2e-06 8_[+1]_71 chrXV:505551-507162 4.7e-06 35_[+1]_44 chrVIII:514655-514877 6e-06 78_[-1]_1 chrX:213389-213489 6e-06 21_[-1]_58 chrVIII:126299-127940 6e-06 14_[-1]_65 chrX:648813-648913 6e-06 7_[+1]_72 chrIV:1265909-1266591 6e-06 42_[-1]_37 chrVII:541422-541921 6.7e-06 55_[-1]_24 chrIX:156986-157536 6.7e-06 43_[+1]_36 chrII:290740-291370 6.7e-06 5_[-1]_74 chrXV:254061-255161 9.3e-06 14_[+1]_65 chrVII:77389-78307 1e-05 19_[-1]_60 chrVII:77404-78307 1e-05 12_[-1]_67 chrXV:159094-160911 1e-05 18_[-1]_61 chrXIV:663499-663965 1.2e-05 62_[+1]_17 chrXV:80161-83207 1.2e-05 74_[-1]_5 chrV:281954-284494 1.2e-05 38_[+1]_41 chrX:187611-187711 1.3e-05 77_[-1]_2 chrVI:82309-84516 1.3e-05 74_[-1]_5 chrXIV:343176-343658 1.3e-05 22_[+1]_57 chrVII:825793-826444 1.4e-05 36_[+1]_43 chrIV:603356-603732 1.6e-05 76_[+1]_3 chrXVI:403363-403685 1.7e-05 39_[-1]_40 chrXV:887878-888174 1.7e-05 68_[-1]_11 chrXIII:57276-57899 1.9e-05 59_[-1]_20 chrXI:308986-310040 1.9e-05 14_[-1]_65 chrX:90484-90584 1.9e-05 5_[+1]_74 chrXIII:555801-556297 2.1e-05 22_[+1]_57 chrIV:1357162-1358173 2.3e-05 8_[-1]_71 chrV:510066-511756 2.6e-05 30_[+1]_49 chrVIII:160335-161002 2.6e-05 15_[+1]_64 chrXIII:425908-426632 2.6e-05 2_[-1]_77 chrXV:832062-832982 2.6e-05 44_[-1]_35 chrIII:194093-194601 2.8e-05 58_[+1]_21 chrVIII:236500-237048 2.8e-05 48_[-1]_31 chrIV:571962-572451 3.1e-05 48_[+1]_31 chrII:82699-84187 3.1e-05 40_[-1]_39 chrVIII:147480-148907 3.1e-05 70_[+1]_9 chrVII:870008-870818 3.4e-05 30_[-1]_49 chrXVI:340708-341326 3.4e-05 62_[+1]_17 chrVII:901381-902191 3.4e-05 36_[-1]_43 chrII:565234-565857 4e-05 50_[+1]_29 chrXVI:432332-434555 4.4e-05 40_[+1]_39 chrV:27461-29955 4.4e-05 60_[-1]_19 chrII:452499-453805 4.4e-05 77_[+1]_2 chrIV:785633-786516 4.8e-05 40_[+1]_39 chrXIII:623601-624411 4.8e-05 5_[+1]_74 chrXV:615890-616572 4.8e-05 1_[-1]_78 chrV:362530-363462 5.2e-05 70_[-1]_9 chrIV:1202107-1202890 5.6e-05 50_[+1]_29 chrIII:56411-58900 5.6e-05 32_[-1]_47 chrXII:799368-799987 6.1e-05 34_[+1]_45 chrXII:734863-737510 6.6e-05 26_[-1]_53 chrV:266135-268427 6.6e-05 54_[+1]_25 chrX:519170-519270 8.4e-05 60_[+1]_19 chrIV:1114564-1115111 9.8e-05 41_[-1]_38 chrVIII:34266-36361 0.00011 72_[-1]_7 chrVII:783679-785346 0.00011 76_[+1]_3 chrV:337234-337785 0.00012 61_[-1]_18 chrV:70099-70583 0.00012 65_[+1]_14 chrIV:812061-813348 0.00013 9_[-1]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAMRAWRAWRAAGAARAVAAD MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAMRAWRAWRAAGAARAVAAD width=21 seqs=86 chrVII:373851-374549 ( 48) AAAGAAGAAAAAGAAAACAAT 1 chrX:140551-140651 ( 15) GAAAAAGAAGAAGGAGAAGAG 1 chrXVI:251787-252942 ( 26) GACGAGGAAGAAGAAGAAGAT 1 chrXI:386874-387669 ( 41) GAAGAAAATGAAGAAAGGAAA 1 chrXII:903476-904877 ( 50) GAAGAAGAGGAAGAAGAGGAT 1 chrIV:1239180-1240335 ( 49) GAAGAAGAAAAGGAAGAAGAA 1 chrXIII:159137-160289 ( 52) GAAATGGAAAGAGAAAAGAAA 1 chrVIII:384958-387110 ( 35) GAAGATGAAGATGAAGAAAGT 1 chrXV:797226-798839 ( 44) GCAGTAGATGATGGAGACAAA 1 chrIV:507593-509943 ( 41) AATAATGCTGAAGAAAACAAG 1 chrV:206386-207337 ( 71) AAAGAAAGTGAAGATAAGAAA 1 chrIV:322021-323825 ( 11) AACGAAGAAGAAGACGCCAAG 1 chrXVI:741416-741624 ( 4) AAAATGGATGAAGAAAAGGAA 1 chrIV:155389-156086 ( 33) GACAAAAATAAATAAAAAAAA 1 chrXIV:505329-507583 ( 50) AAAGTTGAAAACGAAAGGAAG 1 chrII:122127-122682 ( 68) AAAGAGGGAAAAAAAAAAAAG 1 chrV:155729-156609 ( 9) GAAAAAAAAGAATAAAAAATA 1 chrIV:627719-628142 ( 62) GAAATTGAGAATGGAAAAAAG 1 chrXI:338044-339040 ( 16) GAAAAATATGAAAAAAAGGAG 1 chrVII:957223-957801 ( 80) GACGATGATGACGACAATAAT 1 chrXIII:251423-253187 ( 31) GATAAATATGACGAAAACAAT 1 chrIV:308201-310678 ( 44) ACAGATAAAAAAGAAGGAAAA 1 chrXI:109055-110578 ( 34) GATGAAACTAGCGGAAAGAAA 1 chrIV:1384888-1385796 ( 17) AAGGAAGATAAAGGAGGGAGA 1 chrXIV:181613-182219 ( 53) GAAGCGGATAAGGAAAAGAAG 1 chrVII:648572-649700 ( 9) AAAGAAGGCGGTGAAAACAAA 1 chrXV:505551-507162 ( 36) GACGTTGCTGGTGGTAAGAAG 1 chrVIII:514655-514877 ( 79) AACAAAGAAAAAAGAAATGAG 1 chrX:213389-213489 ( 22) GATGAAACAAGCGATAAAAAG 1 chrVIII:126299-127940 ( 15) AAAAAGGAAGGAAAAGAAATA 1 chrX:648813-648913 ( 8) GATGATGGGAAAAAAAAGATA 1 chrIV:1265909-1266591 ( 43) AAAAAAAAGAACGAAAAAGAA 1 chrVII:541422-541921 ( 56) GAAGATTGAGAATGAGAAATA 1 chrIX:156986-157536 ( 44) GATGAAAATAGAAAAGAAATA 1 chrII:290740-291370 ( 6) GAAGATGCTGAAGAAGAATTG 1 chrXV:254061-255161 ( 15) GAAGAATCTGACGACGACATG 1 chrVII:77389-78307 ( 20) ACCAATAAAAATGGAGAGAAT 1 chrVII:77404-78307 ( 13) ACCAATAAAAATGGAGAGAAT 1 chrXV:159094-160911 ( 19) GACGGTGGTGAAGGTAAGGAA 1 chrXIV:663499-663965 ( 63) ACAAAAAAAAAAGATGGAAAG 1 chrXV:80161-83207 ( 75) GTCGTAGGAAAAGGAAAAGAA 1 chrV:281954-284494 ( 39) GAAGACGGTAAATGTGAAAAG 1 chrX:187611-187711 ( 78) AATAATGGAAAATATGAAAAA 1 chrVI:82309-84516 ( 75) GATGATAATGGTAAAGACAAT 1 chrXIV:343176-343658 ( 23) ACTATATAAAAAGAAAACAAA 1 chrVII:825793-826444 ( 37) GATGAAACTAATGAAGGTAAG 1 chrIV:603356-603732 ( 77) GAAAAAGCTGAATGAGCAATA 1 chrXVI:403363-403685 ( 40) GATAAGGCGAATGAAAATAAA 1 chrXV:887878-888174 ( 69) GAAAAAGGTGACTGAAATATG 1 chrXIII:57276-57899 ( 60) AACACAGAAAAAAGTAACAAG 1 chrXI:308986-310040 ( 15) GACAATTAAAAATGTGAAAAT 1 chrX:90484-90584 ( 6) AAAAGAAATAAAGAAGAAATG 1 chrXIII:555801-556297 ( 23) GCGGAGTAAAAAGAAAATAAT 1 chrIV:1357162-1358173 ( 9) GAAAAAGATGAATGCAGAAGA 1 chrV:510066-511756 ( 31) GAAGAAGAAGGTGCTGCCAAG 1 chrVIII:160335-161002 ( 16) GAAAATAAAAAATAAGTGAAA 1 chrXIII:425908-426632 ( 3) GTGGAAGAAAAAAAAAAAATA 1 chrXV:832062-832982 ( 45) AATATAAATGAATGAAAGATA 1 chrIII:194093-194601 ( 59) AAAGTTTAAAAAGGTACAAAG 1 chrVIII:236500-237048 ( 49) AACGAAAAAAATATAAAAAAG 1 chrIV:571962-572451 ( 49) GTCGTATGAGGAGAAAAGAAA 1 chrII:82699-84187 ( 41) AAGAATGAAAAATATAAGATT 1 chrVIII:147480-148907 ( 71) AAAGTTAGAGGAGACAGGAAA 1 chrVII:870008-870818 ( 31) AACGTTGAGAATGAAGATATT 1 chrXVI:340708-341326 ( 63) AAAGAAAATAAATTAAAAATA 1 chrVII:901381-902191 ( 37) AAAGTTGAAGAAAAAAAGTAT 1 chrII:565234-565857 ( 51) GATGCGAAAAAAGATGAAGTA 1 chrXVI:432332-434555 ( 41) GACGATGCTAACATTAAGAAG 1 chrV:27461-29955 ( 61) GATGAGTAGAGCGAAAAAGAT 1 chrII:452499-453805 ( 78) GAAGAAGCTGAAAGAGCCGGT 1 chrIV:785633-786516 ( 41) AATAATGAAAAATCAAACGAA 1 chrXIII:623601-624411 ( 6) ACCGAGGGAGAAGAATAGAAT 1 chrXV:615890-616572 ( 2) GAAGATGACAGCGAAAGCGGA 1 chrV:362530-363462 ( 71) GAGATAGAAGGCGAAAGTATG 1 chrIV:1202107-1202890 ( 51) AAAATAAATAATAAAAAGAGA 1 chrIII:56411-58900 ( 33) GCCAAGGAAGGTGATAACGTT 1 chrXII:799368-799987 ( 35) GCAAATAAAGAATACAAAATT 1 chrXII:734863-737510 ( 27) GATATCAAGAAAGGTGACAAG 1 chrV:266135-268427 ( 55) ACCGAAAATAGATGAACCAAA 1 chrX:519170-519270 ( 61) GATATGTCTGAAGTAGACAAA 1 chrIV:1114564-1115111 ( 42) GACATAGAAAATAGTAGCAGA 1 chrVIII:34266-36361 ( 73) GACAAATACGATGAAGTCAAG 1 chrVII:783679-785346 ( 77) GATGTCGGAGATGAAGATAGT 1 chrV:337234-337785 ( 62) ACGGAATAAAACTACAACAAG 1 chrV:70099-70583 ( 66) AAAGCTAAAAAGGACAAGATA 1 chrIV:812061-813348 ( 10) AAGGAAGCTGGTGGTAGGGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAMRAWRAWRAAGAARAVAAD MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 38160 bayes= 9.79862 E= 1.7e-017 39 -1307 164 -1307 141 -45 -1307 -315 59 36 -122 -57 43 -1307 161 -1307 117 -203 -303 -41 69 -244 -33 2 -4 -1307 152 -104 115 -33 -22 -1307 69 -244 -103 26 82 -1307 125 -1307 137 -1307 6 -1307 94 -33 -244 -49 -83 -1307 172 -65 104 -303 61 -274 117 -103 -1307 -57 96 -1307 101 -473 131 -145 -45 -373 17 36 67 -157 133 -1307 6 -373 110 -1307 -103 -34 55 -1307 72 -41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAMRAWRAWRAAGAARAVAAD MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 86 E= 1.7e-017 0.406977 0.000000 0.593023 0.000000 0.825581 0.139535 0.000000 0.034884 0.465116 0.244186 0.081395 0.209302 0.418605 0.000000 0.581395 0.000000 0.697674 0.046512 0.023256 0.232558 0.500000 0.034884 0.151163 0.313953 0.302326 0.000000 0.546512 0.151163 0.686047 0.151163 0.162791 0.000000 0.500000 0.034884 0.093023 0.372093 0.546512 0.000000 0.453488 0.000000 0.802326 0.000000 0.197674 0.000000 0.593023 0.151163 0.034884 0.220930 0.174419 0.000000 0.627907 0.197674 0.639535 0.023256 0.290698 0.046512 0.697674 0.093023 0.000000 0.209302 0.604651 0.000000 0.383721 0.011628 0.767442 0.069767 0.139535 0.023256 0.348837 0.244186 0.302326 0.104651 0.779070 0.000000 0.197674 0.023256 0.662791 0.000000 0.093023 0.244186 0.453488 0.000000 0.313953 0.232558 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAMRAWRAWRAAGAARAVAAD MEME-1 regular expression -------------------------------------------------------------------------------- [GA]A[ACT][GA][AT][AT][GA]A[AT][AG]A[AT]G[AG][AT][AG]A[AGC]A[AT][AGT] -------------------------------------------------------------------------------- Time 220.92 secs. ******************************************************************************** ******************************************************************************** MOTIF CRWMRSCTTYRTCAWCAVYGK MEME-2 width = 21 sites = 61 llr = 618 E-value = 1.0e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CRWMRSCTTYRTCAWCAVYGK MEME-2 Description -------------------------------------------------------------------------------- Simplified A 26535:121:51:55:83:32 pos.-specific C 5::5:48213128:18:45:1 probability G 242155:2::31:22122:75 matrix T 2:32::157615222::15:3 bits 2.4 2.2 1.9 1.7 * * Relative 1.4 * * Entropy 1.2 ** * * * (14.6 bits) 1.0 * *** * ** ** 0.7 * *** * * ** ** 0.5 ** *** ** * ** ** 0.2 ******* ****** ****** 0.0 --------------------- Multilevel CAACGGCTTTATCAACACCGG consensus GTAAC CGC GT GATAT sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRWMRSCTTYRTCAWCAVYGK MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrX:453205-453305 + 3 7.34e-10 AC CGACAGCCTTAGCAGCACCGG TAGAGGATGG chrVII:882193-884162 + 38 7.34e-10 AAGACCTTAC CGACAGCCTTAGCAGCACCGG TGGAGGATGG chrVIII:543394-543870 - 65 9.01e-08 TACCTAATAT TATAGCCTTTATCAACAATGG AATCCCAACA chrVII:541422-541921 + 7 9.01e-08 TAATAT TATAGCCTTTATCAACAATGG AATCCCAACA chrVII:130855-131461 + 16 9.01e-08 TGGTAAACAG CGAAGGCATTGTCAACGATGT TTGGTTACCT chrIV:1239180-1240335 - 11 1.06e-07 TCACCACCGG CAGCAGCACCGGCAGCACCGG CAGCAGCAGA chrXII:648661-651401 - 50 1.06e-07 TGCATCGGAG CAGAACCTTCATTAGCACCGG TTGGACTAAC chrV:460113-461846 + 67 1.24e-07 TCACCGCCTT CGGAAGCATCACCACCACTGG CAAGGTTGAA chrX:622173-622273 + 49 2.64e-07 GCGTGGATAA CGACGCTTCTGCCTACAACGG AGGTAGGACC chrIII:56411-58900 - 73 7.96e-07 TCGCTAA CGAAGCCGCTACCGTCAATGT TGCAGAAGGT chrV:406545-409344 + 26 9.07e-07 CAACAAATGA CAAAGCCTTGGTCATCACTGC TATATAACGC chrXIV:253046-254295 - 27 1.17e-06 TGCTTCTTAG CAAAAGCTTCATCAGCAGCCT TGAACTCTTC chrIV:488782-489332 - 53 1.32e-06 CTGCATTTTC AAACGGTGTCGTCGACACTGT AAAATAAATC chrVII:56372-57518 - 50 1.69e-06 GATGGGATAA TAACACCTTTCCCAGCAGCGA TCCCGTCGGC chrXIII:161775-164504 + 16 1.91e-06 ATGGAAACGA GGTTACCGTTATCATCAACGA TAAGCAATTT chrVII:640649-641465 - 14 1.91e-06 ATGATGATTG GGGTGGCCTCGACTGCACTGG CTGTGGTGTT chrV:396559-398094 - 70 2.15e-06 AATCTAGAAC CAGAACCTTTGACGGCAATGA TGTACAAGTT chrVII:800966-802005 + 33 2.15e-06 GTAGCTATGC CAATGCCTATGTCGACACCAC CATTTATCCC chrXII:262925-264401 + 5 2.42e-06 TTGC CAAGACCTTTACCGTCGATGT CTCTTCTCCA chrXII:515239-516954 - 3 2.42e-06 TCCTTACCGG AGAAGGCACCACCACCGACGG AT chrIV:1466005-1468702 - 7 3.40e-06 TCCAATCCAA GAAAGGCTATTCCATCGGCGG CAAAGA chrV:303746-306145 - 36 3.80e-06 GCAATGTTCT TGACGGCTTTATCTAGATCAG CGTCAGCAAA chrXV:29081-32040 + 28 4.73e-06 GCAGCGACTT CGACAGCTTCAGTTGCAATGA CTGAACCGGT chrXVI:641827-643798 - 65 4.73e-06 ATCCATAATT GGTCACCCATGTCAATACCGG TACATGGACC chrXIV:302449-303845 + 74 5.86e-06 GTCAACCAGT CAACGACTTCATTGACACTGC TACTAG chrII:168200-169788 - 8 8.00e-06 GAGTGGACAG TAACGGCCTTCTTGACGATGG TTCCGTT chrIX:98071-99662 + 16 8.00e-06 AAACGTTCCA AAGCGGCCTTACCACGAGCAG TCTTGTGAGA chrII:606064-607655 + 28 8.00e-06 ACCAAGGTAA GACCGGTGTTGTCTACAACGT TACTAAGTCT chrVII:1057167-1059120 + 79 8.00e-06 ATAACAAAAT CGGAAGCTTCGATAACGGCAG A chrXVI:406422-408018 + 66 8.85e-06 ACCAAGGTAA GACCGGTGTCGTCTACAACGT TACCAAGTCT chrVII:179884-180357 - 67 9.78e-06 GAAAAAAAAT CAACACTTGTAACAACAGCAG CAACAAATAT chrIII:137445-139511 + 1 9.78e-06 . GGTCGACTCTATCATCATTGG TGGTGGTATG chrIV:465890-466700 - 23 1.08e-05 TTGCGGATAT GGATGCCTTGCTCATCAGCGT CTCTTACAAA chrXIV:500765-503408 - 50 1.08e-05 CCCGTAGAAG TGTCAGTATTTTCAACACCAG ACCAGCCACC chrXIV:229299-231126 + 77 1.19e-05 CAAATAATCT CAACAGCCATACCTTCATCAT AAA chrVI:52845-55057 + 3 1.19e-05 GA CGTGAGTAACACCATCACCGG AATCCAAAAC chrXIII:551723-553324 + 52 1.31e-05 CAGCTACTGC TGTTGCCCATGTCAAGGCCGG TAAGGGTTTG chrII:413752-415451 + 39 1.44e-05 GAGTGGACGG TAACGGCCTTCTTTACGATGG TACCGTTCTT chrVIII:503998-505776 + 64 1.44e-05 CCCAATTTGT AAGAGGCTTCTTCATCGGTGA TACGGTGGAC chrIX:316556-318402 + 65 1.44e-05 CTGTCCCAGA AGGTACCATTGTCTCCAACGT TGAAGAAAAG chrIV:997335-998145 + 21 1.58e-05 TCTATATCTA AAAGACCTTTGCTGACAACGT TGAATAAAAC chrXVI:732883-733496 + 43 1.58e-05 TCAAGGAAGA GGAAGGATCTTTCAACAACGT TATTGGCTAA chrXIII:549765-551413 + 17 1.74e-05 GCAGTCAAAC CAGCGGCCTTAACTTCAGCCA AGGTGAAACC chrIX:23327-25599 - 66 1.74e-05 ACCAAATTGC CATTACCGCTGACATCACTGC TCTTTCTTAT chrXII:662856-665110 - 3 1.74e-05 TTACTAAGGA AGACACCGTTATCCTGAACGG TA chrXII:445376-446186 + 62 1.91e-05 ATGTGTTCTG CATCACCTTCAGTAGCGTTGT TTTGTAGATA chrXV:619464-624824 - 69 2.09e-05 AAGAAGACGA CATAAGCCATACCAATACCGA AACCACGCCA chrIV:471635-472093 - 73 2.09e-05 GGCAAGG CATTGGCAGTAGCTTCACCAG TCAAAGAGTG chrIII:169279-169852 - 30 2.28e-05 ACACTAATAT TATAACCTTTACCGAGAATAG TGAGAAATGT chrXI:551289-552770 + 59 2.28e-05 GTTCTGCTAC CAACAGAATCATCAAGGCTGA TGACCACGCA chrVII:277317-279132 - 14 2.97e-05 TTAGATTGGG TGTAGACATCTTCAACACCAG CCAATTGCAA chrXV:315448-316390 - 23 3.24e-05 ATGCCTTGAA AAACGCCTGTAACAGCATCAT TAACAAGCTT chrXIV:402131-403097 + 39 3.84e-05 ACATCGCTTC GGCTGCCTTCATTTACAGTGT GTCTATAAAA chrXVI:108471-114642 - 48 4.17e-05 GCATATGCAG CATCAGCGCTATTGCCATTGA CAACCTTATG chrIV:555254-556792 + 7 4.53e-05 CTGGTT CGTAAGCGACAACGACGTTAG TCCAGTCCTT chrXIII:732220-733596 + 16 4.91e-05 ATATCGAAAT AGAAGGTGTTGTCGTCGCTAA GAAGGATTTC chrXIII:23568-26102 + 49 5.32e-05 GGATGATTGT CAAGAGATTCGACGGCAGTAG AAGCTCTTTC chrV:85367-86733 + 80 5.76e-05 AGGACTTGAT GGTTACCATCATCTCCGCTAT chrIV:929034-930562 + 72 5.76e-05 TTAGAAATTT CTACACCTTGAGCGACAGTAG CATCAATT chrXVI:432332-434555 + 79 6.23e-05 CAAATCTAGT AAACGGTATTTTCAAGAACGC T chrIV:133230-133907 + 29 6.73e-05 AACAATTTGC CAACGCATTCTTCGATACTGA AAAAAAGATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRWMRSCTTYRTCAWCAVYGK MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:453205-453305 7.3e-10 2_[+2]_77 chrVII:882193-884162 7.3e-10 37_[+2]_42 chrVIII:543394-543870 9e-08 64_[-2]_15 chrVII:541422-541921 9e-08 6_[+2]_73 chrVII:130855-131461 9e-08 15_[+2]_64 chrIV:1239180-1240335 1.1e-07 10_[-2]_69 chrXII:648661-651401 1.1e-07 49_[-2]_30 chrV:460113-461846 1.2e-07 66_[+2]_13 chrX:622173-622273 2.6e-07 48_[+2]_31 chrIII:56411-58900 8e-07 72_[-2]_7 chrV:406545-409344 9.1e-07 25_[+2]_54 chrXIV:253046-254295 1.2e-06 26_[-2]_53 chrIV:488782-489332 1.3e-06 52_[-2]_27 chrVII:56372-57518 1.7e-06 49_[-2]_30 chrXIII:161775-164504 1.9e-06 15_[+2]_64 chrVII:640649-641465 1.9e-06 13_[-2]_66 chrV:396559-398094 2.1e-06 69_[-2]_10 chrVII:800966-802005 2.1e-06 32_[+2]_47 chrXII:262925-264401 2.4e-06 4_[+2]_75 chrXII:515239-516954 2.4e-06 2_[-2]_77 chrIV:1466005-1468702 3.4e-06 6_[-2]_73 chrV:303746-306145 3.8e-06 35_[-2]_44 chrXV:29081-32040 4.7e-06 27_[+2]_52 chrXVI:641827-643798 4.7e-06 64_[-2]_15 chrXIV:302449-303845 5.9e-06 73_[+2]_6 chrII:168200-169788 8e-06 7_[-2]_72 chrIX:98071-99662 8e-06 15_[+2]_64 chrII:606064-607655 8e-06 27_[+2]_52 chrVII:1057167-1059120 8e-06 78_[+2]_1 chrXVI:406422-408018 8.8e-06 65_[+2]_14 chrVII:179884-180357 9.8e-06 66_[-2]_13 chrIII:137445-139511 9.8e-06 [+2]_79 chrIV:465890-466700 1.1e-05 22_[-2]_57 chrXIV:500765-503408 1.1e-05 49_[-2]_30 chrXIV:229299-231126 1.2e-05 76_[+2]_3 chrVI:52845-55057 1.2e-05 2_[+2]_77 chrXIII:551723-553324 1.3e-05 51_[+2]_28 chrII:413752-415451 1.4e-05 38_[+2]_41 chrVIII:503998-505776 1.4e-05 63_[+2]_16 chrIX:316556-318402 1.4e-05 64_[+2]_15 chrIV:997335-998145 1.6e-05 20_[+2]_59 chrXVI:732883-733496 1.6e-05 42_[+2]_37 chrXIII:549765-551413 1.7e-05 16_[+2]_63 chrIX:23327-25599 1.7e-05 65_[-2]_14 chrXII:662856-665110 1.7e-05 2_[-2]_77 chrXII:445376-446186 1.9e-05 61_[+2]_18 chrXV:619464-624824 2.1e-05 68_[-2]_11 chrIV:471635-472093 2.1e-05 72_[-2]_7 chrIII:169279-169852 2.3e-05 29_[-2]_50 chrXI:551289-552770 2.3e-05 58_[+2]_21 chrVII:277317-279132 3e-05 13_[-2]_66 chrXV:315448-316390 3.2e-05 22_[-2]_57 chrXIV:402131-403097 3.8e-05 38_[+2]_41 chrXVI:108471-114642 4.2e-05 47_[-2]_32 chrIV:555254-556792 4.5e-05 6_[+2]_73 chrXIII:732220-733596 4.9e-05 15_[+2]_64 chrXIII:23568-26102 5.3e-05 48_[+2]_31 chrV:85367-86733 5.8e-05 79_[+2] chrIV:929034-930562 5.8e-05 71_[+2]_8 chrXVI:432332-434555 6.2e-05 78_[+2]_1 chrIV:133230-133907 6.7e-05 28_[+2]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRWMRSCTTYRTCAWCAVYGK MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CRWMRSCTTYRTCAWCAVYGK width=21 seqs=61 chrX:453205-453305 ( 3) CGACAGCCTTAGCAGCACCGG 1 chrVII:882193-884162 ( 38) CGACAGCCTTAGCAGCACCGG 1 chrVIII:543394-543870 ( 65) TATAGCCTTTATCAACAATGG 1 chrVII:541422-541921 ( 7) TATAGCCTTTATCAACAATGG 1 chrVII:130855-131461 ( 16) CGAAGGCATTGTCAACGATGT 1 chrIV:1239180-1240335 ( 11) CAGCAGCACCGGCAGCACCGG 1 chrXII:648661-651401 ( 50) CAGAACCTTCATTAGCACCGG 1 chrV:460113-461846 ( 67) CGGAAGCATCACCACCACTGG 1 chrX:622173-622273 ( 49) CGACGCTTCTGCCTACAACGG 1 chrIII:56411-58900 ( 73) CGAAGCCGCTACCGTCAATGT 1 chrV:406545-409344 ( 26) CAAAGCCTTGGTCATCACTGC 1 chrXIV:253046-254295 ( 27) CAAAAGCTTCATCAGCAGCCT 1 chrIV:488782-489332 ( 53) AAACGGTGTCGTCGACACTGT 1 chrVII:56372-57518 ( 50) TAACACCTTTCCCAGCAGCGA 1 chrXIII:161775-164504 ( 16) GGTTACCGTTATCATCAACGA 1 chrVII:640649-641465 ( 14) GGGTGGCCTCGACTGCACTGG 1 chrV:396559-398094 ( 70) CAGAACCTTTGACGGCAATGA 1 chrVII:800966-802005 ( 33) CAATGCCTATGTCGACACCAC 1 chrXII:262925-264401 ( 5) CAAGACCTTTACCGTCGATGT 1 chrXII:515239-516954 ( 3) AGAAGGCACCACCACCGACGG 1 chrIV:1466005-1468702 ( 7) GAAAGGCTATTCCATCGGCGG 1 chrV:303746-306145 ( 36) TGACGGCTTTATCTAGATCAG 1 chrXV:29081-32040 ( 28) CGACAGCTTCAGTTGCAATGA 1 chrXVI:641827-643798 ( 65) GGTCACCCATGTCAATACCGG 1 chrXIV:302449-303845 ( 74) CAACGACTTCATTGACACTGC 1 chrII:168200-169788 ( 8) TAACGGCCTTCTTGACGATGG 1 chrIX:98071-99662 ( 16) AAGCGGCCTTACCACGAGCAG 1 chrII:606064-607655 ( 28) GACCGGTGTTGTCTACAACGT 1 chrVII:1057167-1059120 ( 79) CGGAAGCTTCGATAACGGCAG 1 chrXVI:406422-408018 ( 66) GACCGGTGTCGTCTACAACGT 1 chrVII:179884-180357 ( 67) CAACACTTGTAACAACAGCAG 1 chrIII:137445-139511 ( 1) GGTCGACTCTATCATCATTGG 1 chrIV:465890-466700 ( 23) GGATGCCTTGCTCATCAGCGT 1 chrXIV:500765-503408 ( 50) TGTCAGTATTTTCAACACCAG 1 chrXIV:229299-231126 ( 77) CAACAGCCATACCTTCATCAT 1 chrVI:52845-55057 ( 3) CGTGAGTAACACCATCACCGG 1 chrXIII:551723-553324 ( 52) TGTTGCCCATGTCAAGGCCGG 1 chrII:413752-415451 ( 39) TAACGGCCTTCTTTACGATGG 1 chrVIII:503998-505776 ( 64) AAGAGGCTTCTTCATCGGTGA 1 chrIX:316556-318402 ( 65) AGGTACCATTGTCTCCAACGT 1 chrIV:997335-998145 ( 21) AAAGACCTTTGCTGACAACGT 1 chrXVI:732883-733496 ( 43) GGAAGGATCTTTCAACAACGT 1 chrXIII:549765-551413 ( 17) CAGCGGCCTTAACTTCAGCCA 1 chrIX:23327-25599 ( 66) CATTACCGCTGACATCACTGC 1 chrXII:662856-665110 ( 3) AGACACCGTTATCCTGAACGG 1 chrXII:445376-446186 ( 62) CATCACCTTCAGTAGCGTTGT 1 chrXV:619464-624824 ( 69) CATAAGCCATACCAATACCGA 1 chrIV:471635-472093 ( 73) CATTGGCAGTAGCTTCACCAG 1 chrIII:169279-169852 ( 30) TATAACCTTTACCGAGAATAG 1 chrXI:551289-552770 ( 59) CAACAGAATCATCAAGGCTGA 1 chrVII:277317-279132 ( 14) TGTAGACATCTTCAACACCAG 1 chrXV:315448-316390 ( 23) AAACGCCTGTAACAGCATCAT 1 chrXIV:402131-403097 ( 39) GGCTGCCTTCATTTACAGTGT 1 chrXVI:108471-114642 ( 48) CATCAGCGCTATTGCCATTGA 1 chrIV:555254-556792 ( 7) CGTAAGCGACAACGACGTTAG 1 chrXIII:732220-733596 ( 16) AGAAGGTGTTGTCGTCGCTAA 1 chrXIII:23568-26102 ( 49) CAAGAGATTCGACGGCAGTAG 1 chrV:85367-86733 ( 80) GGTTACCATCATCTCCGCTAT 1 chrIV:929034-930562 ( 72) CTACACCTTGAGCGACAGTAG 1 chrXVI:432332-434555 ( 79) AAACGGTATTTTCAAGAACGC 1 chrIV:133230-133907 ( 29) CAACGCATTCTTCGATACTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRWMRSCTTYRTCAWCAVYGK MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 38160 bayes= 9.97803 E= 1.0e-003 -92 137 -8 -92 85 -1257 117 -424 71 -195 -21 -15 1 127 -153 -92 67 -1257 142 -1257 -265 117 147 -1257 -224 205 -1257 -107 -66 -8 -21 57 -124 -53 -195 115 -1257 86 -195 97 76 -153 64 -143 -107 17 -73 76 -1257 214 -1257 -92 76 -353 37 -54 57 -95 5 -33 -1257 214 -73 -265 131 -1257 27 -1257 8 92 5 -143 -1257 151 -1257 57 -24 -253 189 -1257 -78 -121 132 -24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRWMRSCTTYRTCAWCAVYGK MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 61 E= 1.0e-003 0.163934 0.491803 0.180328 0.163934 0.557377 0.000000 0.426230 0.016393 0.508197 0.049180 0.163934 0.278689 0.311475 0.459016 0.065574 0.163934 0.491803 0.000000 0.508197 0.000000 0.049180 0.426230 0.524590 0.000000 0.065574 0.786885 0.000000 0.147541 0.196721 0.180328 0.163934 0.459016 0.131148 0.131148 0.049180 0.688525 0.000000 0.344262 0.049180 0.606557 0.524590 0.065574 0.295082 0.114754 0.147541 0.213115 0.114754 0.524590 0.000000 0.836066 0.000000 0.163934 0.524590 0.016393 0.245902 0.213115 0.459016 0.098361 0.196721 0.245902 0.000000 0.836066 0.114754 0.049180 0.770492 0.000000 0.229508 0.000000 0.327869 0.360656 0.196721 0.114754 0.000000 0.540984 0.000000 0.459016 0.262295 0.032787 0.704918 0.000000 0.180328 0.081967 0.475410 0.262295 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRWMRSCTTYRTCAWCAVYGK MEME-2 regular expression -------------------------------------------------------------------------------- C[AG][AT][CA][GA][GC]CTT[TC][AG][TC]C[AGT][AT]C[AG][CA][CT][GA][GT] -------------------------------------------------------------------------------- Time 423.50 secs. ******************************************************************************** ******************************************************************************** MOTIF ACARGWGRKCTGBTGAWHTKASMCAARAAS MEME-3 width = 30 sites = 6 llr = 166 E-value = 3.6e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACARGWGRKCTGBTGAWHTKASMCAARAAS MEME-3 Description -------------------------------------------------------------------------------- Simplified A 8:83:5:5:::::::853::a:5:8838a: pos.-specific C 2a::::2::a::3::2:3:2:538:::::5 probability G :::5a:837::a3:a:2::3:5:22:72:5 matrix T ::22:5:23:a:3a::33a5::2::2:::: bits 2.4 * * * * * 2.2 * * * * * 1.9 * * * * * 1.7 * * * *** ** * * * * Relative 1.4 * * * *** ** * ** * ** Entropy 1.2 ** * * **** *** * ** ** **** (40.0 bits) 1.0 *** * * **** *** * ** ******* 0.7 *** *** **** *** * ** ******* 0.5 **************** ************ 0.2 ****************************** 0.0 ------------------------------ Multilevel ACAGGAGAGCTGCTGAAATTACACAAGAAC consensus A T GT G TC G GC A G sequence T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACARGWGRKCTGBTGAWHTKASMCAARAAS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrIV:1359706-1361296 + 70 1.22e-15 GTTGATTTAC ACAAGAGAGCTGGTGAATTGACCCAAGAAG A chrXIII:222420-224052 - 49 1.22e-15 GTTGATTTGC ACAAGAGAGCTGGTGAATTGACCCAAGAAG AATTGGAAAG chrXIV:63180-64803 + 5 7.56e-15 TGAA ACAGGTGGTCTGTTGATCTTAGACAAGAAC AAAGCCTTCA chrXV:92947-94612 + 42 7.56e-15 AGAGACAGAA ACAGGTGGTCTGTTGATCTTAGACAAGAAC AAAGCCTTCA chrV:302517-303608 + 35 4.29e-12 GTAACATACC ACTGGAGAGCTGCTGCGATTAGACGTAGAG GATCAGGTCC chrIV:116082-117397 + 29 7.39e-12 TTGCCAGAAG CCATGTCTGCTGCTGAAATCACTGAAAAAC TAGGTTTACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACARGWGRKCTGBTGAWHTKASMCAARAAS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1359706-1361296 1.2e-15 69_[+3]_1 chrXIII:222420-224052 1.2e-15 48_[-3]_22 chrXIV:63180-64803 7.6e-15 4_[+3]_66 chrXV:92947-94612 7.6e-15 41_[+3]_29 chrV:302517-303608 4.3e-12 34_[+3]_36 chrIV:116082-117397 7.4e-12 28_[+3]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACARGWGRKCTGBTGAWHTKASMCAARAAS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACARGWGRKCTGBTGAWHTKASMCAARAAS width=30 seqs=6 chrIV:1359706-1361296 ( 70) ACAAGAGAGCTGGTGAATTGACCCAAGAAG 1 chrXIII:222420-224052 ( 49) ACAAGAGAGCTGGTGAATTGACCCAAGAAG 1 chrXIV:63180-64803 ( 5) ACAGGTGGTCTGTTGATCTTAGACAAGAAC 1 chrXV:92947-94612 ( 42) ACAGGTGGTCTGTTGATCTTAGACAAGAAC 1 chrV:302517-303608 ( 35) ACTGGAGAGCTGCTGCGATTAGACGTAGAG 1 chrIV:116082-117397 ( 29) CCATGTCTGCTGCTGAAATCACTGAAAAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACARGWGRKCTGBTGAWHTKASMCAARAAS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 33867 bayes= 12.9099 E= 3.6e-003 143 -19 -923 -923 -923 239 -923 -923 143 -923 -923 -89 10 -923 139 -89 -923 -923 239 -923 69 -923 -923 69 -923 -19 213 -923 69 -923 81 -89 -923 -923 181 10 -923 239 -923 -923 -923 -923 -923 169 -923 -923 239 -923 -923 81 81 10 -923 -923 -923 169 -923 -923 239 -923 143 -19 -923 -923 69 -923 -19 10 10 81 -923 10 -923 -923 -923 169 -923 -19 81 69 169 -923 -923 -923 -923 139 139 -923 69 81 -923 -89 -923 213 -19 -923 143 -923 -19 -923 143 -923 -923 -89 10 -923 181 -923 143 -923 -19 -923 169 -923 -923 -923 -923 139 139 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACARGWGRKCTGBTGAWHTKASMCAARAAS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 6 E= 3.6e-003 0.833333 0.166667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.000000 0.000000 0.166667 0.333333 0.000000 0.500000 0.166667 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.166667 0.833333 0.000000 0.500000 0.000000 0.333333 0.166667 0.000000 0.000000 0.666667 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.333333 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.500000 0.000000 0.166667 0.333333 0.333333 0.333333 0.000000 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.166667 0.333333 0.500000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.500000 0.333333 0.000000 0.166667 0.000000 0.833333 0.166667 0.000000 0.833333 0.000000 0.166667 0.000000 0.833333 0.000000 0.000000 0.166667 0.333333 0.000000 0.666667 0.000000 0.833333 0.000000 0.166667 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACARGWGRKCTGBTGAWHTKASMCAARAAS MEME-3 regular expression -------------------------------------------------------------------------------- ACA[GA]G[AT]G[AG][GT]CTG[CGT]TGA[AT][ACT]T[TG]A[CG][AC]CAA[GA]AA[CG] -------------------------------------------------------------------------------- Time 617.00 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:45411-46831 2.29e-01 100 chrXIV:240883-241482 9.02e-01 100 chrIV:1295361-1295710 3.82e-01 100 chrIV:1354362-1355749 9.02e-03 45_[-3(3.98e-05)]_25 chrVII:805986-807921 3.15e-01 100 chrXIII:650788-653052 6.04e-02 100 chrXIII:23568-26102 1.21e-01 48_[+2(5.32e-05)]_31 chrIV:590388-591226 4.64e-01 100 chrIV:1265909-1266591 2.97e-02 42_[-1(5.98e-06)]_37 chrVII:364716-366882 2.61e-01 100 chrV:460113-461846 8.68e-05 66_[+2(1.24e-07)]_13 chrIII:222542-222746 3.07e-01 100 chrIX:316556-318402 2.34e-02 3_[-2(5.32e-05)]_40_[+2(1.44e-05)]_\ 15 chrXIII:218995-221118 7.97e-01 100 chrVII:56372-57518 2.08e-03 49_[-2(1.69e-06)]_9_[-2(8.44e-05)] chrXIII:122797-124395 3.35e-01 100 chrXV:547876-548479 2.89e-01 100 chrXIV:23784-27635 1.41e-01 100 chrVIII:491684-493549 6.08e-01 100 chrXVI:641827-643798 1.56e-02 64_[-2(4.73e-06)]_15 chrXII:587452-587856 2.93e-01 100 chrVII:555572-557704 8.76e-01 100 chrXV:832062-832982 8.30e-03 44_[-1(2.56e-05)]_35 chrVII:915622-915995 4.30e-01 100 chrXIV:720593-723420 5.19e-01 100 chrIV:1328639-1331307 7.74e-01 100 chrXI:100161-107756 1.37e-01 100 chrVII:599209-601555 9.93e-03 42_[-3(3.16e-05)]_28 chrV:266135-268427 1.77e-02 54_[+1(6.64e-05)]_25 chrXIV:508308-508845 8.11e-01 100 chrXVI:64435-66914 2.01e-02 100 chrXVI:514181-517294 1.11e-01 100 chrXV:841531-843071 9.71e-02 100 chrXVI:701676-702452 5.89e-01 100 chrXI:141162-143146 2.39e-01 100 chrVII:1021254-1022019 5.82e-01 100 chrIII:176900-179001 1.14e-01 100 chrXVI:350193-352627 1.05e-01 100 chrXIV:215599-217351 9.85e-01 100 chrXIII:732220-733596 1.00e-01 15_[+2(4.91e-05)]_64 chrXIII:555801-556297 1.28e-02 22_[+1(2.12e-05)]_57 chrXIV:439662-440472 2.65e-01 100 chrX:120144-120244 2.04e-01 100 chrXII:515239-516954 1.37e-03 2_[-2(2.42e-06)]_77 chrXVI:104582-105010 6.57e-01 100 chrII:396706-397990 5.01e-01 100 chrVII:901381-902191 2.81e-02 36_[-1(3.37e-05)]_43 chrXV:736897-737707 3.24e-01 100 chrX:189891-189991 9.34e-01 100 chrXIII:671254-675069 8.50e-02 100 chrXII:123887-124697 2.48e-01 100 chrVII:920356-922192 4.38e-02 100 chrXVI:340708-341326 5.01e-02 62_[+1(3.37e-05)]_17 chrXV:866871-868302 5.63e-02 100 chrXII:500939-501388 3.57e-01 100 chrIV:627719-628142 7.01e-03 61_[-1(1.73e-06)]_18 chrXIV:402131-403097 5.47e-03 38_[+2(3.84e-05)]_41 chrII:376104-378754 6.44e-01 100 chrIV:308201-310678 6.33e-03 43_[-1(2.25e-06)]_36 chrV:406545-409344 7.78e-04 25_[+2(9.07e-07)]_54 chrVII:254360-254907 1.27e-01 100 chrXII:363090-363534 5.24e-01 100 chrX:381143-381243 1.15e-01 100 chrIV:1021381-1022473 5.66e-01 100 chrXI:551289-552770 3.30e-02 58_[+2(2.28e-05)]_21 chrXV:887878-888174 1.33e-02 68_[-1(1.74e-05)]_11 chrXII:590378-590663 6.46e-01 100 chrXVI:119846-120656 1.25e-01 100 chrVII:52170-52785 3.83e-01 100 chrXV:589275-589978 2.38e-01 100 chrXIII:755660-755943 9.98e-01 100 chrIV:138945-139647 9.69e-01 100 chrXV:822187-822604 2.10e-01 100 chrXIII:222420-224052 2.03e-11 48_[-3(1.22e-15)]_22 chrVIII:234936-235746 3.43e-01 100 chrXII:201494-202852 5.87e-01 100 chrV:100528-102725 1.00e-01 100 chrXVI:136222-136828 7.45e-01 100 chrX:648813-648913 1.93e-02 7_[+1(5.98e-06)]_7_[-1(3.68e-05)]_\ 44 chrIV:355069-357149 9.70e-01 100 chrXII:653192-653565 8.03e-01 100 chrIV:1324789-1325169 1.17e-01 100 chrXV:418404-419214 5.34e-01 100 chrXIV:343176-343658 5.14e-02 22_[+1(1.28e-05)]_57 chrV:281954-284494 1.20e-02 38_[+1(1.16e-05)]_41 chrIV:116082-117397 1.63e-08 28_[+3(7.39e-12)]_42 chrVII:398358-400866 8.19e-02 100 chrXIV:658120-661984 8.64e-01 100 chrV:298680-302205 6.11e-02 100 chrIV:1046777-1047587 1.34e-01 100 chrII:556067-558674 2.39e-01 100 chrXII:253604-255438 2.96e-01 100 chrXV:89357-89840 2.46e-01 100 chrXV:615890-616572 3.70e-02 1_[-1(4.77e-05)]_78 chrXV:21948-22535 6.64e-02 100 chrXII:669051-669608 3.63e-01 100 chrXVI:403363-403685 9.99e-03 39_[-1(1.74e-05)]_40 chrXII:836854-839589 2.28e-01 100 chrXIV:181613-182219 1.48e-02 52_[-1(2.91e-06)]_27 chrIII:229432-230812 6.98e-01 100 chrVIII:384023-384754 3.46e-01 100 chrXV:413983-414588 2.86e-01 100 chrXIII:557210-558573 9.04e-02 100 chrIV:220721-222087 4.42e-01 100 chrIV:603356-603732 9.06e-03 76_[+1(1.58e-05)]_3 chrXII:445376-446186 3.09e-03 61_[+2(1.91e-05)]_18 chrVIII:126299-127940 8.00e-04 14_[-1(5.98e-06)]_65 chrIV:769470-770556 6.87e-01 100 chrIV:1384888-1385796 3.19e-03 16_[-1(2.91e-06)]_63 chrIII:15182-17087 1.72e-01 100 chrXVI:741416-741624 3.77e-03 3_[-1(5.52e-07)]_76 chrX:410925-411025 2.02e-01 100 chrXIII:251423-253187 8.12e-03 30_[-1(1.98e-06)]_49 chrIV:992428-992968 5.89e-01 100 chrV:433066-434404 2.19e-01 100 chrXII:855624-857707 6.23e-02 100 chrIV:194186-194659 6.69e-01 100 chrXII:658443-659700 4.86e-01 100 chrIV:1104673-1105197 7.59e-01 100 chrXV:80161-83207 2.53e-02 74_[-1(1.16e-05)]_5 chrXV:92947-94612 1.66e-10 41_[+3(7.56e-15)]_29 chrXIII:388588-391256 1.69e-02 100 chrXIV:347387-347722 6.12e-02 100 chrX:125173-125273 3.86e-01 100 chrXV:503052-503732 2.61e-01 100 chrX:440575-440675 1.12e-01 100 chrV:70099-70583 1.48e-01 100 chrIV:1399423-1400006 4.29e-02 100 chrXII:648661-651401 1.09e-03 49_[-2(1.06e-07)]_30 chrXVI:466322-466685 4.33e-01 100 chrXII:522439-523758 1.69e-02 45_[-3(2.41e-05)]_25 chrVI:82309-84516 3.04e-04 74_[-1(1.28e-05)]_5 chrVII:970291-974244 4.94e-01 100 chrIV:525224-527541 3.00e-01 100 chrXII:799368-799987 1.08e-01 34_[+1(6.12e-05)]_45 chrIV:1260614-1260993 6.43e-01 100 chrIV:337874-338644 3.33e-01 100 chrVII:959722-961721 6.49e-02 100 chrXII:1026934-1027436 9.07e-01 100 chrXIII:425908-426632 6.99e-02 2_[-1(2.56e-05)]_77 chrXII:662856-665110 1.79e-02 2_[-2(1.74e-05)]_77 chrIV:330861-333384 8.24e-01 100 chrIV:322021-323825 6.81e-04 10_[+1(4.73e-07)]_69 chrVII:1057167-1059120 7.07e-03 78_[+2(8.00e-06)]_1 chrIV:488782-489332 8.89e-04 52_[-2(1.32e-06)]_27 chrIII:28402-29206 7.53e-01 100 chrVIII:157339-157813 1.81e-01 100 chrXII:720331-721649 6.72e-01 100 chrXV:547876-548470 2.89e-01 100 chrXII:809584-816209 9.74e-01 100 chrV:302517-303608 5.18e-08 34_[+3(4.29e-12)]_36 chrII:606064-607655 3.94e-03 27_[+2(8.00e-06)]_12_[+2(5.32e-05)]_\ 19 chrVII:479041-483186 8.43e-02 100 chrIV:937428-937916 8.81e-01 100 chrII:604279-605887 1.03e-01 52_[+3(8.69e-05)]_18 chrVII:640649-641465 3.12e-03 13_[-2(1.91e-06)]_66 chrXV:29081-32040 1.54e-03 27_[+2(4.73e-06)]_52 chrIX:98071-99662 5.56e-03 15_[+2(8.00e-06)]_64 chrXII:825571-826381 4.66e-02 100 chrXIII:270987-271493 2.03e-01 100 chrVII:641421-642162 1.65e-01 100 chrXVI:732883-733496 2.93e-02 42_[+2(1.58e-05)]_37 chrXV:896315-898534 2.71e-01 100 chrIV:507593-509943 5.60e-04 40_[-1(3.46e-07)]_39 chrVI:52845-55057 4.03e-03 2_[+2(1.19e-05)]_77 chrIV:812061-813348 1.34e-01 100 chrXIII:161775-164504 2.07e-03 15_[+2(1.91e-06)]_64 chrIII:169279-169852 1.77e-02 29_[-2(2.28e-05)]_50 chrX:213389-213489 1.32e-02 21_[-1(5.98e-06)]_58 chrIX:23327-25599 9.23e-03 65_[-2(1.74e-05)]_14 chrXVI:134715-135991 8.18e-03 100 chrVI:130818-131467 4.11e-01 100 chrIV:626411-626848 7.51e-01 100 chrIV:471635-472093 2.72e-02 72_[-2(2.09e-05)]_7 chrII:79587-80087 8.19e-01 100 chrX:140551-140651 7.72e-05 14_[+1(7.20e-09)]_3_[+1(8.38e-06)]_\ 41 chrXVI:718267-719656 1.53e-01 100 chrII:483648-484116 7.11e-01 100 chrX:75717-75817 1.57e-01 100 chrXVI:465663-466001 7.89e-01 100 chrXII:897919-899843 3.31e-01 100 chrXVI:785860-787904 6.27e-01 100 chrX:90484-90584 4.98e-02 5_[+1(1.92e-05)]_74 chrXIV:289233-289714 2.71e-01 100 chrXVI:253883-254519 4.04e-01 100 chrXV:619464-624824 1.70e-02 68_[-2(2.09e-05)]_11 chrIV:133230-133907 4.10e-02 28_[+2(6.73e-05)]_51 chrVIII:381256-382973 1.47e-01 100 chrIV:1169888-1170393 1.33e-01 100 chrXIV:413332-417046 7.88e-01 100 chrV:138548-140630 1.18e-02 100 chrXV:254061-255161 1.42e-04 21_[-2(8.00e-06)]_58 chrIX:68497-69939 3.88e-01 100 chrXII:728650-730784 9.68e-02 100 chrIV:809805-810737 7.48e-01 100 chrXII:262925-264401 7.01e-03 4_[+2(2.42e-06)]_75 chrVIII:160335-161002 2.73e-02 15_[+1(2.56e-05)]_64 chrXIV:663499-663965 1.75e-02 62_[+1(1.16e-05)]_17 chrVIII:514655-514877 1.04e-02 78_[-1(5.98e-06)]_1 chrXV:1006464-1007101 1.98e-01 100 chrXII:903476-904877 2.56e-05 49_[-1(2.20e-08)]_30 chrVII:783679-785346 1.15e-02 100 chrVII:438804-440142 2.96e-01 100 chrVIII:384958-387110 4.61e-04 34_[-1(2.11e-07)]_9_[-1(4.20e-06)]_\ 15 chrVII:372038-372526 1.81e-01 100 chrXIII:551723-553324 5.86e-03 51_[+2(1.31e-05)]_28 chrXI:557092-557756 7.03e-01 100 chrXII:707913-710622 9.76e-01 100 chrIII:137445-139511 1.02e-03 [+2(9.78e-06)]_79 chrXII:636479-640397 1.74e-01 100 chrIV:913843-915020 8.41e-02 [+3(4.07e-05)]_70 chrXVI:822401-824734 5.83e-01 100 chrX:519170-519270 6.23e-03 60_[+1(8.39e-05)]_19 chrII:305044-305438 7.80e-02 100 chrVIII:147480-148907 1.95e-02 70_[+1(3.08e-05)]_9 chrXII:845089-845570 6.30e-01 100 chrXII:927742-928346 4.65e-01 100 chrXII:657431-658130 4.67e-01 100 chrVII:696950-697670 9.43e-01 100 chrV:59049-59487 6.73e-01 100 chrXV:409246-410204 7.33e-01 100 chrIV:1180858-1181171 8.53e-01 100 chrX:622173-622273 6.56e-04 48_[+2(2.64e-07)]_31 chrXVI:412150-413603 5.13e-01 100 chrII:392720-395551 2.14e-01 100 chrXVI:108471-114642 1.03e-02 47_[-2(4.17e-05)]_32 chrVII:255038-255776 4.82e-01 100 chrXVI:56209-56616 8.98e-01 100 chrIV:43815-44771 1.73e-01 100 chrVII:474001-474682 6.35e-01 100 chrXIII:892412-895667 4.69e-01 100 chrX:464011-464111 6.38e-01 100 chrVII:824424-825023 5.97e-02 100 chrVII:882193-884162 6.07e-06 37_[+2(7.34e-10)]_42 chrXIII:623601-624411 4.82e-02 5_[+1(4.77e-05)]_74 chrIV:1441042-1442365 5.47e-01 100 chrV:339366-342394 5.54e-02 100 chrIV:117453-118418 1.68e-01 100 chrVIII:34266-36361 3.06e-02 100 chrXII:867292-868931 7.50e-01 100 chrX:289578-289678 1.45e-01 100 chrII:290740-291370 5.69e-03 5_[-1(6.71e-06)]_74 chrX:187611-187711 3.31e-03 77_[-1(1.28e-05)]_2 chrIII:64364-65311 3.78e-01 100 chrXVI:207820-208506 2.90e-01 100 chrVII:373851-374549 1.30e-05 47_[+1(4.39e-09)]_7_[-1(2.33e-05)]_\ 4 chrVII:786862-788381 1.05e-01 100 chrIV:1359706-1361296 3.59e-12 69_[+3(1.22e-15)]_1 chrVIII:211263-211845 5.76e-01 100 chrXVI:377645-378624 2.45e-01 100 chrVII:179884-180357 2.06e-02 66_[-2(9.78e-06)]_13 chrVII:800966-802005 1.70e-03 32_[+2(2.15e-06)]_47 chrIX:156986-157536 1.63e-02 43_[+1(6.71e-06)]_36 chrXV:876635-877927 2.67e-01 100 chrVII:825793-826444 3.95e-02 36_[+1(1.42e-05)]_43 chrXI:308986-310040 1.44e-02 14_[-1(1.92e-05)]_65 chrXIV:253046-254295 1.99e-03 26_[-2(1.17e-06)]_53 chrXV:159094-160911 9.16e-03 18_[-1(1.04e-05)]_61 chrII:427383-429040 4.28e-01 100 chrVII:277317-279132 3.33e-02 13_[-2(2.97e-05)]_66 chrXII:1002091-1002877 1.94e-01 100 chrV:269008-270371 4.24e-01 100 chrV:432371-432953 7.28e-01 100 chrXV:743274-743911 7.83e-01 100 chrVI:222787-223985 6.47e-01 100 chrXI:109055-110578 6.70e-04 33_[-1(2.56e-06)]_46 chrIV:929034-930562 9.02e-02 71_[+2(5.76e-05)]_8 chrXIV:623186-623996 9.48e-02 100 chrXIV:505329-507583 3.25e-03 49_[-1(6.42e-07)]_30 chrII:168200-169788 2.86e-03 7_[-2(8.00e-06)]_72 chrVII:130855-131461 4.16e-05 15_[+2(9.01e-08)]_64 chrII:372225-372728 6.49e-01 100 chrIV:489396-491255 5.29e-01 100 chrXV:815504-816281 7.27e-01 100 chrXII:944170-944572 5.35e-01 100 chrXII:545555-548045 7.52e-01 100 chrVII:345708-346775 2.53e-01 100 chrV:85367-86733 4.21e-02 79_[+2(5.76e-05)] chrXII:1028643-1030380 1.86e-02 100 chrVIII:503998-505776 2.82e-02 63_[+2(1.44e-05)]_16 chrXII:265965-266487 6.98e-01 100 chrXI:386874-387669 4.05e-05 40_[-1(2.20e-08)]_39 chrX:462561-462661 5.48e-01 100 chrXVI:692394-695171 6.76e-02 100 chrVIII:104014-105516 6.37e-01 100 chrXVI:653925-655484 1.55e-01 100 chrIV:785633-786516 2.90e-03 40_[+1(4.77e-05)]_39 chrXV:307259-308070 7.01e-01 100 chrV:332165-332636 8.22e-01 100 chrIV:1357162-1358173 1.98e-02 8_[-1(2.33e-05)]_71 chrXVI:451457-452638 5.28e-02 100 chrXIII:362735-363177 3.81e-01 100 chrVII:308053-308744 1.10e-01 100 chrXIV:302449-303845 4.35e-03 73_[+2(5.86e-06)]_6 chrIV:628174-628621 6.56e-01 100 chrXVI:143322-143905 8.21e-01 100 chrVII:87184-88438 2.04e-01 100 chrXV:882480-883543 2.76e-02 4_[-2(3.53e-05)]_75 chrI:65087-68053 5.10e-01 100 chrX:453205-453305 1.67e-06 2_[+2(7.34e-10)]_77 chrXVI:247467-247958 1.82e-01 100 chrXVI:153861-154499 7.49e-01 100 chrVII:957223-957801 5.16e-04 79_[-1(1.98e-06)] chrXVI:730796-731502 7.77e-01 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chrXV:960698-962649 9.25e-01 100 chrIV:173776-174330 8.54e-02 100 chrVIII:374157-375148 4.99e-01 100 chrV:235247-237319 7.08e-02 100 chrXV:883902-884512 7.53e-01 100 chrXV:677756-679014 2.32e-01 100 chrIII:120525-122562 2.78e-01 100 chrVIII:236500-237048 8.13e-02 48_[-1(2.81e-05)]_31 chrXIII:886765-889222 2.96e-02 100 chrXIV:281868-283913 1.47e-01 100 chrV:510066-511756 8.11e-05 30_[+1(2.56e-05)]_49 chrXIV:620946-621479 5.97e-01 100 chrIV:712954-713430 3.57e-01 100 chrXII:930512-932022 1.04e-01 100 chrX:663475-663575 4.05e-01 100 chrV:401260-402070 6.97e-01 100 chrXIV:229299-231126 1.17e-02 76_[+2(1.19e-05)]_3 chrVII:846484-848524 6.41e-01 100 chrIII:56411-58900 2.92e-06 32_[-1(5.64e-05)]_19_[-2(7.96e-07)]_\ 7 chrXI:282645-285045 8.00e-03 100 chrV:93249-94059 2.93e-01 100 chrXVI:280455-281800 2.63e-01 100 chrXVI:810296-810816 8.61e-01 100 chrIII:194093-194601 5.74e-02 58_[+1(2.81e-05)]_21 chrXV:91679-93115 5.04e-01 100 chrVII:648572-649700 9.26e-03 8_[+1(4.20e-06)]_71 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chrIV:1114564-1115111 1.09e-01 41_[-1(9.77e-05)]_38 chrV:503916-505419 1.06e-01 100 chrV:396559-398094 1.24e-03 69_[-2(2.15e-06)]_10 chrXVI:741194-741598 5.07e-01 100 chrXIII:57276-57899 6.89e-02 59_[-1(1.92e-05)]_20 chrXII:128707-129351 2.50e-01 100 chrXV:722606-725785 2.98e-02 100 chrXVI:866384-866802 8.78e-01 100 chrVII:1048219-1050257 6.68e-02 100 chrXV:304495-306189 6.33e-01 100 chrV:337234-337785 1.88e-01 100 chrIV:1049503-1050313 9.27e-01 100 chrIV:1239180-1240335 2.53e-08 10_[-2(1.06e-07)]_17_[+1(1.78e-07)]_\ 6_[+1(6.71e-06)]_4 chrIV:232102-232347 6.84e-02 100 chrXII:826766-827241 7.47e-02 1_[-3(9.26e-05)]_69 chrXIV:576459-577586 9.47e-01 100 chrXVI:96068-98829 6.91e-01 100 chrVII:77389-78307 9.01e-04 19_[-1(1.04e-05)]_60 chrX:435373-435473 8.31e-01 100 chrIII:194233-195043 7.17e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************