Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.017366 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.057805 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.075399 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.015411 Invoking: fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/seqs-sampled Finished invoke: name: sample_seqs status: 0 time: 0.067083 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background Finished invoke: name: bg status: 0 time: 0.013027 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 867.43223 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/seqs-shuffled Finished invoke: name: dreme status: 0 time: 114.466302 Invoking: centrimo -seqlen 476 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.1924 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.724983 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background -primary GSBYNYDTGGCCBAGTKGKTWARGSSHHVS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.607683 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background -primary TAAYCNKRRGRTCMBSGGTTCGAHYCCSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.630853 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background -primary RARRTGTAYGGRTGTAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.523115 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.26827 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.300051 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background -primary CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.304639 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background -primary CRCCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.469204 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background -primary ARAAAAR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.607974 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background -primary AGGRAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.377997 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background -primary GTCAKAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 0.302191 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background -primary AACCRCTT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml Finished invoke: name: spamo11 status: 0 time: 0.240123 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background -primary GTGGAGAY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml Finished invoke: name: spamo12 status: 0 time: 0.229063 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background -primary CACTATR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml Finished invoke: name: spamo13 status: 0 time: 0.274255 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background -primary ASAAAGCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml Finished invoke: name: spamo14 status: 0 time: 0.248999 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background -primary GYGGTCTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml Finished invoke: name: spamo15 status: 0 time: 0.259712 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/spamo_out_16 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background -primary AATCCMAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml Finished invoke: name: spamo16 status: 0 time: 0.245818 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/spamo_out_17 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background -primary CGCGTGSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml Finished invoke: name: spamo17 status: 0 time: 0.304909 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background --motif GSBYNYDTGGCCBAGTKGKTWARGSSHHVS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa Finished invoke: name: fimo1 status: 0 time: 0.294703 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background --motif TAAYCNKRRGRTCMBSGGTTCGAHYCCSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa Finished invoke: name: fimo2 status: 0 time: 0.291736 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background --motif RARRTGTAYGGRTGTAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa Finished invoke: name: fimo3 status: 0 time: 0.276273 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa Finished invoke: name: fimo4 status: 0 time: 0.183669 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa Finished invoke: name: fimo5 status: 0 time: 0.183451 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background --motif CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa Finished invoke: name: fimo6 status: 0 time: 0.182064 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background --motif CRCCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa Finished invoke: name: fimo7 status: 0 time: 0.165706 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background --motif ARAAAAR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa Finished invoke: name: fimo8 status: 0 time: 0.168289 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background --motif AGGRAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa Finished invoke: name: fimo9 status: 0 time: 0.166361 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background --motif GTCAKAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa Finished invoke: name: fimo10 status: 0 time: 0.182233 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background --motif AACCRCTT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa Finished invoke: name: fimo11 status: 0 time: 0.184731 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background --motif GTGGAGAY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa Finished invoke: name: fimo12 status: 0 time: 0.18325 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background --motif CACTATR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa Finished invoke: name: fimo13 status: 0 time: 0.167161 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background --motif ASAAAGCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa Finished invoke: name: fimo14 status: 0 time: 0.182298 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background --motif GYGGTCTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa Finished invoke: name: fimo15 status: 0 time: 0.18374 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/fimo_out_16 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background --motif AATCCMAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa Finished invoke: name: fimo16 status: 0 time: 0.184992 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/fimo_out_17 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background --motif CGCGTGSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/BY4741--PHD1.fa Finished invoke: name: fimo17 status: 0 time: 0.184431 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/summary.tsv Finished invoke: name: summary status: 0 time: 0.16388 Done