******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrVIII:125858-126344 1.0000 100 chrIV:538897-539278 1.0000 100 chrV:354674-355310 1.0000 100 chrX:374196-374296 1.0000 100 chrXV:619094-619517 1.0000 100 chrXII:932019-932545 1.0000 100 chrVI:221702-222113 1.0000 100 chrVIII:452442-453023 1.0000 100 chrVII:480193-480670 1.0000 100 chrVI:101133-101667 1.0000 100 chrIII:127523-127912 1.0000 100 chrVII:882462-884039 1.0000 100 chrVIII:296832-297241 1.0000 100 chrX:703228-703328 1.0000 100 chrXVI:303483-303959 1.0000 100 chrI:182360-182842 1.0000 100 chrXVI:67037-67259 1.0000 100 chrXI:308001-308437 1.0000 100 chrXIV:718414-718890 1.0000 100 chrXII:48655-49116 1.0000 100 chrXIII:626458-626881 1.0000 100 chrVII:412107-412619 1.0000 100 chrXVI:731883-732377 1.0000 100 chrIV:1489143-1489677 1.0000 100 chrXV:445250-445436 1.0000 100 chrIII:168104-168570 1.0000 100 chrXV:670128-670604 1.0000 100 chrII:140499-140667 1.0000 100 chrVII:544420-544870 1.0000 100 chrVII:811184-811660 1.0000 100 chrIX:131719-132195 1.0000 100 chrXIII:837674-838196 1.0000 100 chrXI:326272-327633 1.0000 100 chrXII:241546-242042 1.0000 100 chrXII:26-342 1.0000 100 chrXII:91509-91985 1.0000 100 chrVII:438521-438921 1.0000 100 chrXVI:303997-304280 1.0000 100 chrX:422638-422738 1.0000 100 chrII:405565-406212 1.0000 100 chrVIII:4995-5665 1.0000 100 chrVIII:379565-379863 1.0000 100 chrXV:281839-282429 1.0000 100 chrXII:282479-282884 1.0000 100 chrIV:1236735-1236995 1.0000 100 chrXVI:434034-434326 1.0000 100 chrIV:914228-914704 1.0000 100 chrX:156765-156865 1.0000 100 chrV:487120-487601 1.0000 100 chrXII:232193-234253 1.0000 100 chrIX:255009-255485 1.0000 100 chrVIII:48134-48628 1.0000 100 chrVII:803313-803789 1.0000 100 chrXVI:75422-75625 1.0000 100 chrXII:793706-795208 1.0000 100 chrXVI:280009-280251 1.0000 100 chrVII:919819-920254 1.0000 100 chrX:414772-414872 1.0000 100 chrIV:217071-217663 1.0000 100 chrXIII:168561-169135 1.0000 100 chrXII:198930-199641 1.0000 100 chrVIII:386344-386599 1.0000 100 chrXIV:6455-7460 1.0000 100 chrXVI:404259-404567 1.0000 100 chrIV:83337-83795 1.0000 100 chrXV:520536-521039 1.0000 100 chrIV:359329-359880 1.0000 100 chrIV:509143-509495 1.0000 100 chrV:79006-79482 1.0000 100 chrII:104-299 1.0000 100 chrXIII:25015-25618 1.0000 100 chrV:362156-362525 1.0000 100 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chrIII:123398-123835 1.0000 100 chrXI:258355-259009 1.0000 100 chrVIII:237670-238194 1.0000 100 chrVII:598716-599192 1.0000 100 chrVIII:103866-104288 1.0000 100 chrIII:177159-177597 1.0000 100 chrI:71985-72322 1.0000 100 chrXII:263047-263579 1.0000 100 chrXV:167918-168487 1.0000 100 chrXI:68135-68481 1.0000 100 chrV:174685-175025 1.0000 100 chrV:85896-86187 1.0000 100 chrXV:161688-162021 1.0000 100 chrXIV:776854-777330 1.0000 100 chrXII:637165-637513 1.0000 100 chrIV:1441215-1441691 1.0000 100 chrII:592867-593302 1.0000 100 chrVII:254040-254578 1.0000 100 chrXVI:559983-560548 1.0000 100 chrVII:700473-701303 1.0000 100 chrXV:978752-979161 1.0000 100 chrIV:229460-229808 1.0000 100 chrVII:920883-921107 1.0000 100 chrVII:959350-959614 1.0000 100 chrXIII:420336-420909 1.0000 100 chrXVI:942340-942830 1.0000 100 chrXI:519514-519825 1.0000 100 chrXI:163431-164016 1.0000 100 chrXII:899297-899613 1.0000 100 chrI:180913-181495 1.0000 100 chrXIV:63879-64355 1.0000 100 chrV:145475-145951 1.0000 100 chrXIII:731958-732476 1.0000 100 chrVII:401365-401831 1.0000 100 chrV:77516-77884 1.0000 100 chrXV:903948-904638 1.0000 100 chrVII:876148-876698 1.0000 100 chrIV:322989-323383 1.0000 100 chrXVI:338702-339121 1.0000 100 chrV:59318-59794 1.0000 100 chrII:60638-61306 1.0000 100 chrV:85071-85518 1.0000 100 chrIV:1354608-1354857 1.0000 100 chrVIII:358297-358835 1.0000 100 chrXII:369164-370318 1.0000 100 chrVIII:109657-110133 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 564 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 56400 N= 564 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.299 C 0.201 G 0.201 T 0.299 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PHD1/background): A 0.310 C 0.190 G 0.190 T 0.310 ******************************************************************************** ******************************************************************************** MOTIF GSBYNYDTGGCCBAGTKGKTWARGSSHHVS MEME-1 width = 30 sites = 101 llr = 1845 E-value = 3.3e-380 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSBYNYDTGGCCBAGTKGKTWARGSSHHVS MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::1213:2:::1a1::::26641::3221 pos.-specific C :43434::::763:::1:11:121542443 probability G a52:314:8a:22:9:5a5::337441:25 matrix T ::54344a::324::a3:563111123311 bits 2.4 * * 2.2 * * * 1.9 * * * 1.7 * *** ** * Relative 1.4 * **** *** * Entropy 1.2 * **** *** * (26.4 bits) 1.0 ** **** *** * ** 0.7 ** ***** ****** *** 0.5 **** ****** ********* *** * 0.2 **** ********************* *** 0.0 ------------------------------ Multilevel GGTCCTTTGGCCTAGTGGGTAAAGCGACCG consensus CCTGCG TGC T TATGG GCTTAC sequence G T A TG CAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNYDTGGCCBAGTKGKTWARGSSHHVS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXII:734617-735063 + 12 6.29e-14 AACAAAGTTT GGTCTCTTGGCCCAGTTGGTTAAGGCACCG TGCTAATAAC chrXVI:880080-880577 - 62 6.29e-14 CAATATAAT GGTCTCTTGGCCCAGTTGGTTAAGGCACCG TGCTAATAAC chrV:551113-551565 - 40 6.29e-14 ACAGATTACA GGTCTCTTGGCCCAGTTGGTTAAGGCACCG TGCTAATAAC chrIX:183250-183734 - 42 6.29e-14 ACAAATTCCT GGTCTCTTGGCCCAGTTGGTTAAGGCACCG TGCTAATAAC chrXVI:819280-819784 + 47 6.29e-14 ACAATAGAAT GGTCTCTTGGCCCAGTTGGTTAAGGCACCG TGCTAATAAC chrIX:210460-210956 + 7 6.29e-14 ATATCT GGTCTCTTGGCCCAGTTGGTTAAGGCACCG TGCTAATAAC chrV:443027-443558 - 4 6.29e-14 ATTAAAATTT GGTCTCTTGGCCCAGTTGGTTAAGGCACCG TGC chrXII:1051861-1052376 - 47 6.29e-14 TCCTTTTCAT GGTCTCTTGGCCCAGTTGGTTAAGGCACCG TGCTAATAAC chrIV:667775-668305 - 61 6.29e-14 GATCCAAATT GGTCTCTTGGCCCAGTTGGTTAAGGCACCG TGCTAATAAC chrXVI:689325-689877 + 14 1.67e-12 GATTATTTTG GGCACTATGGCCGAGTGGTTAAGGCGACAG ACTTGAAATC chrV:288240-288763 - 44 1.67e-12 CATAATGATA GGCACTATGGCCGAGTGGTTAAGGCGACAG ACTTGAAATC chrVI:204766-205200 - 34 2.94e-12 ACAAACGTTC GGGCGTGTGGCGTAGTCGGTAGCGCGCTCC CTTAGCATGG chrX:197121-197221 - 10 2.94e-12 AATAATATTA GGGCGTGTGGCGTAGTCGGTAGCGCGCTCC CTTAGCATG chrVIII:115948-116397 - 28 7.13e-12 CACTATTAGA GCTTCTATGGCCAAGTTGGTAAGGCGCCAC ACTAGTAATG chrXV:113527-114039 + 69 7.13e-12 CAGAGATTTA GCTTCTATGGCCAAGTTGGTAAGGCGCCAC AC chrXIV:560460-561016 - 48 7.13e-12 GTAATAACGG GCTTCTATGGCCAAGTTGGTAAGGCGCCAC ACTAGTAATG chrII:266143-266695 + 9 7.13e-12 CAAAAACT GCTTCTATGGCCAAGTTGGTAAGGCGCCAC ACTAGTAATG chrX:58914-59014 - 40 7.13e-12 TAAAATAGAA GCTTCTATGGCCAAGTTGGTAAGGCGCCAC ACTAGTAATG chrIX:325506-326033 + 29 7.13e-12 TAAAATACGA GCTTCTATGGCCAAGTTGGTAAGGCGCCAC ACTAGTAATG chrIV:433983-434603 - 64 7.13e-12 ATCAGAA GCTTCTATGGCCAAGTTGGTAAGGCGCCAC ACTAGTAATG chrXV:353840-354320 - 54 7.13e-12 ACGGTTTACT GCTTCTATGGCCAAGTTGGTAAGGCGCCAC ACTAGTAATG chrIII:295269-295757 + 21 7.13e-12 ATACAATTAA GCTTCTATGGCCAAGTTGGTAAGGCGCCAC ACTAGTAATG chrIV:1305421-1305911 + 14 1.00e-11 TACAAATTAA GGCAACTTGGCCGAGTGGTTAAGGCGAAAG ATTAGAAATC chrVIII:132836-133408 - 6 1.00e-11 TATAATAAGT GGCAACTTGGCCGAGTGGTTAAGGCGAAAG ATTAG chrX:523777-523877 - 65 1.00e-11 ATTAAA GGCAACTTGGCCGAGTGGTTAAGGCGAAAG ATTAGAAATC chrII:226836-227388 + 13 1.00e-11 TGTAAAACGA GGCAACTTGGCCGAGTGGTTAAGGCGAAAG ATTAGAAATC chrIV:980806-981298 - 24 1.00e-11 TGTAAATTGA GGCAACTTGGCCGAGTGGTTAAGGCGAAAG ATTAGAAATC chrI:182360-182842 - 23 1.00e-11 ATACAATTTT GGCAACTTGGCCGAGTGGTTAAGGCGAAAG ATTAGAAATC chrIII:227697-228240 + 24 4.13e-11 AAATCGAAAT GGCACTATGGCCGAGTGGTTAAGGCGAGAG ACTCGAATGG chrIV:1150627-1151192 - 53 4.79e-11 AAGTGTTTCA GTCCCAGTGGCCGAGTGGTTAAGGCGATGC CTGCTATTTC chrVI:191293-191859 - 58 4.79e-11 AAGAGATTCT GTCCCAGTGGCCGAGTGGTTAAGGCGATGC CCTGCTATTT chrXII:784146-784594 + 34 4.79e-11 TTGTTCAACC GTCCCAGTGGCCGAGTGGTTAAGGCGATGC CTGCTATTTC chrX:617693-617793 + 44 1.13e-10 AACAAACAAT GGGAGTTTGGCCGAGTGGTTTAAGGCGTCA GATTTAGGTG chrXII:731837-732320 + 62 1.13e-10 AACATACAAT GGGAGTTTGGCCGAGTGGTTTAAGGCGTCA GATTTAGGT chrVII:794156-794669 + 55 1.48e-10 CATAGATTGC GGGCACATGGCGCAGTTGGTAGCGCGCTTC CCTTGCAAGG chrIV:884107-884642 + 37 5.31e-10 TTTCGAAAAT GCTCGTGTAGCTCAGTGGTTAGAGCTTCGT GCTTATAGCA chrXIII:420336-420909 - 60 9.58e-10 ACAAATAACA GGTTTCGTGGTCTAGTCGGTTATGGCATCT GCTTAACACG chrVIII:85144-85594 - 23 9.58e-10 ATAAGAATTT GGTTTCGTGGTCTAGTCGGTTATGGCATCT GCTTAACACG chrX:378141-378241 + 33 9.58e-10 TAAATTAATA GGTTTCGTGGTCTAGTCGGTTATGGCATCT GCTTAACACG chrVII:73640-74157 - 25 9.58e-10 TCAATTAAGT GGTTTCGTGGTCTAGTCGGTTATGGCATCT GCTTAACACG chrV:438467-438941 + 46 9.58e-10 CAACAAATTA GGTTTCGTGGTCTAGTCGGTTATGGCATCT GCTTAACACG chrVII:412107-412619 - 25 9.58e-10 TCAAAAAACT GGTTTCGTGGTCTAGTCGGTTATGGCATCT GCTTAACACG chrXI:308001-308437 - 19 9.58e-10 ACAATTAAGT GGTTTCGTGGTCTAGTCGGTTATGGCATCT GCTTAACACG chrVI:137240-137778 - 71 1.68e-09 . GACTCCATGGCCAAGTTGGTTAAGGCGTGC GACTGTTAAT chrXI:74368-74895 + 43 1.68e-09 ATAGCAATTA GACTCCATGGCCAAGTTGGTTAAGGCGTGC GACTGTTAAT chrVII:730900-731434 + 20 1.68e-09 TAGTCAAAAA GACTCCATGGCCAAGTTGGTTAAGGCGTGC GACTGTTAAT chrIII:127523-127912 + 49 1.68e-09 AAGATAAAAT GACTCCATGGCCAAGTTGGTTAAGGCGTGC GACTGTTAAT chrVII:205279-205790 + 37 2.32e-09 ACAAATAAGT GGTTGTTTGGCCGAGCGGTCTAAGGCGCCT GATTCAAGCA chrIV:1461564-1462131 - 3 2.32e-09 ACAAATAAGT GGTTGTTTGGCCGAGCGGTCTAAGGCGCCT GA chrXII:628158-628707 + 1 2.32e-09 . GGTTGTTTGGCCGAGCGGTCTAAGGCGCCT GATTCAAGAA chrVII:857237-857689 - 49 2.32e-09 ACAAATAAGT GGTTGTTTGGCCGAGCGGTCTAAGGCGCCT GATTCAAGAA chrXV:464190-464723 + 44 3.53e-09 AAGTTAACAA GGGCGTGTGGTCTAGTGGTATGATTCTCGC TTTGGGCGAC chrI:138939-139454 + 6 3.53e-09 AGTAC GGGCGTGTGGTCTAGTGGTATGATTCTCGC TTTGGGCGAC chrXII:92307-92842 + 24 3.53e-09 AAGTTAATAA GGGCGTGTGGTCTAGTGGTATGATTCTCGC TTTGGGCGAC chrXV:300814-301429 + 26 3.53e-09 AGAAAAGATC GGGCGTGTGGTCTAGTGGTATGATTCTCGC TTTGGGCGAC chrXIII:195857-196430 - 48 3.53e-09 AAGTTCACAA GGGCGTGTGGTCTAGTGGTATGATTCTCGC TTTGGGCGAC chrVI:101133-101667 + 26 3.53e-09 ACAATAATTC GGGCGTGTGGTCTAGTGGTATGATTCTCGC TTTGGGCGAC chrVII:845437-845903 + 29 3.91e-09 TAAATAACAA GCGCAAGTGGTTTAGTGGTAAAATCCAACG TTGCCATCGT chrXVI:860145-860602 + 56 3.91e-09 TAAATAACAA GCGCAAGTGGTTTAGTGGTAAAATCCAACG TTGCCATCGT chrIV:992547-993082 + 68 3.91e-09 ACAATTGTGA GCGCAAGTGGTTTAGTGGTAAAATCCAACG TTG chrXIII:183721-184178 - 40 3.91e-09 AATAAAGATC GCGCAAGTGGTTTAGTGGTAAAATCCAACG TTGCCATCGT chrXVI:571977-572553 + 54 3.91e-09 ACAATACTTC GCGCAAGTGGTTTAGTGGTAAAATCCAACG TTGCCATCGT chrIV:83337-83795 + 32 3.91e-09 AGTTCACTTA GCGCAAGTGGTTTAGTGGTAAAATCCAACG TTGCCATCGT chrVII:876148-876698 + 21 7.06e-09 TAATAGAATA GCCTTGTTGGCGCAATCGGTAGCGCGTATG ACTCTTAATC chrXV:976160-976743 + 20 7.06e-09 TATTTTGTGC GCTTCAGTAGCTCAGTAGGAAGAGCGTCAG TCTCATAATC chrIX:300045-300563 - 17 7.06e-09 CAACGAAATA GCCTTGTTGGCGCAATCGGTAGCGCGTATG ACTCTTAATC chrXIII:480412-480897 - 60 7.06e-09 ACAATAAGTA GCCTTGTTGGCGCAATCGGTAGCGCGTATG ACTCTTAATC chrIV:1352289-1352777 - 26 7.06e-09 CAACGAAATA GCCTTGTTGGCGCAATCGGTAGCGCGTATG ACTCTTAATC chrX:390862-390962 - 45 7.06e-09 AAGAAATAGT GCTTCAGTAGCTCAGTAGGAAGAGCGTCAG TCTCATAATC chrVII:185518-185986 - 55 7.06e-09 CAACGAAATA GCCTTGTTGGCGCAATCGGTAGCGCGTATG ACTCTTAATC chrX:414772-414872 + 2 7.06e-09 A GCCTTGTTGGCGCAATCGGTAGCGCGTATG ACTCTTAATC chrX:422638-422738 + 33 7.06e-09 TCCTTTGTAT GCTTCAGTAGCTCAGTAGGAAGAGCGTCAG TCTCATAATC chrXV:438393-438988 + 3 1.35e-08 CA TCCTTGTTAGCTCAGTTGGTAGAGCGTTCG GCTTTTAAGC chrXI:578770-579258 + 1 1.35e-08 . TCCTTGTTAGCTCAGTTGGTAGAGCGTTCG GCTTTTAAGC chrIV:359329-359880 + 23 1.35e-08 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTAGAGCGTTCG GCTTTTAAGC chrVIII:358297-358835 - 24 1.62e-08 CAAATAGTAA GCGGATTTAGCTCAGTTGGGAGAGCGCCAG ACTGAAGAAA chrXVI:559983-560548 - 45 1.62e-08 TAGAAATTGA GCGGATTTAGCTCAGTTGGGAGAGCGCCAG ACTGAAGAAA chrVIII:237670-238194 - 28 1.62e-08 CAAATAGTAA GCGGATTTAGCTCAGTTGGGAGAGCGCCAG ACTGAAGAAA chrIV:520735-521202 + 54 4.06e-08 TCCATTTTAG GGTCCTATAGTGTAGTGGTTATCACTTTCG GTTTTGATCC chrIV:644985-645429 - 38 4.06e-08 CAGTTGTTAC GGTCCTATAGTGTAGTGGTTATCACTTTCG GTTTTGATCC chrIV:802540-803055 - 26 4.06e-08 ATGAATTGTC GGTCCTATAGTGTAGTGGTTATCACTTTCG GTTTTGATCC chrV:250082-250578 + 6 4.06e-08 GTACT GGTCCTATAGTGTAGTGGTTATCACTTTCG GTTTTGATCC chrIII:168104-168570 - 56 4.06e-08 AAGAAGTCCT GGTCCTATAGTGTAGTGGTTATCACTTTCG GTTTTGATCC chrVII:828501-829032 - 49 6.97e-08 ACAAACAGTA GCTCGCGTGGCGTAATGGCAACGCGTCTGA CTTCTAATCA chrXIII:747717-748209 - 21 6.97e-08 CATATGACTA GCTCGCGTGGCGTAATGGCAACGCGTCTGA CTTCTAATCA chrVII:736122-736651 + 4 6.97e-08 ATA GCTCGCGTGGCGTAATGGCAACGCGTCTGA CTTCTAATCA chrVII:405265-405755 + 10 6.97e-08 CAAACAGTA GCTCGCGTGGCGTAATGGCAACGCGTCTGA CTTCTAATCA chrX:355072-355172 + 16 6.97e-08 ACAAACAGTA GCTCGCGTGGCGTAATGGCAACGCGTCTGA CTTCTAATCA chrII:405565-406212 + 40 6.97e-08 ACAAATAGTA GCTCGCGTGGCGTAATGGCAACGCGTCTGA CTTCTAATCA chrV:130852-131379 - 59 9.35e-08 ATAATTAAGA GGTTTTATAGTGTAGTGGTTATCACTTTCG GTTTTGATCC chrIV:519508-520007 + 36 1.00e-07 GTGATTTTAC GGAGGGTTGGCCGAGTGGTCTAAGGCGGCA GACTTAAGAT chrXI:83952-84439 + 63 1.00e-07 AAATTTGTAT GGAGGGTTGGCCGAGTGGTCTAAGGCGGCA GACTTAAG chrV:492149-492620 - 61 1.33e-07 GAACATCCTA TTCCTCGTGGCCCAATGGTCACGGCGTCTG GCTACGAACC chrVII:779354-779869 + 55 1.74e-07 AGTTAACCCC GGGCGGTTAGTGTAGTGGTTATCATCCCAC CCTTCCAAGG chrXV:594160-594690 - 21 1.74e-07 TGATTGAAAC GCGCAAGTGGTTCAGTGGTTAGAATTTATG CTTCCCAAGC chrXVI:435666-436243 - 31 2.12e-07 TACAACAAAA GCTCGTATGGCGCAGTGGTAGCGCAGCAGA TTGCAAATCT chrVII:706906-707430 - 32 2.12e-07 AGAAAATCAA GCTCGTATGGCGCAGTGGTAGCGCAGCAGA TTGCAAATCT chrVIII:466723-467283 + 37 2.12e-07 TGTATTTTTA GCCTCCTTAGCTTAGTGGTAGAGCGTTGCA CTTGTAATGC chrXVI:744074-744577 + 9 2.12e-07 GTGTAAAA GCCTCCTTAGCTTAGTGGTAGAGCGTTGCA CTTGTAATGC chrIV:51-377 - 70 3.93e-07 G GAGTGGATGGTTGAGTGGGGCAGGGTAACG AGTGGGGAGG chrIV:1256887-1257310 - 2 3.93e-07 GATCTTCTTA GCGAAAGTGGTTCAGTGGTTAGAATTCATG C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNYDTGGCCBAGTKGKTWARGSSHHVS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:734617-735063 6.3e-14 11_[+1]_59 chrXVI:880080-880577 6.3e-14 61_[-1]_9 chrV:551113-551565 6.3e-14 39_[-1]_31 chrIX:183250-183734 6.3e-14 41_[-1]_29 chrXVI:819280-819784 6.3e-14 46_[+1]_24 chrIX:210460-210956 6.3e-14 6_[+1]_64 chrV:443027-443558 6.3e-14 3_[-1]_67 chrXII:1051861-1052376 6.3e-14 46_[-1]_24 chrIV:667775-668305 6.3e-14 60_[-1]_10 chrXVI:689325-689877 1.7e-12 13_[+1]_57 chrV:288240-288763 1.7e-12 43_[-1]_27 chrVI:204766-205200 2.9e-12 33_[-1]_37 chrX:197121-197221 2.9e-12 9_[-1]_61 chrVIII:115948-116397 7.1e-12 27_[-1]_43 chrXV:113527-114039 7.1e-12 68_[+1]_2 chrXIV:560460-561016 7.1e-12 47_[-1]_23 chrII:266143-266695 7.1e-12 8_[+1]_62 chrX:58914-59014 7.1e-12 39_[-1]_31 chrIX:325506-326033 7.1e-12 28_[+1]_42 chrIV:433983-434603 7.1e-12 63_[-1]_7 chrXV:353840-354320 7.1e-12 53_[-1]_17 chrIII:295269-295757 7.1e-12 20_[+1]_50 chrIV:1305421-1305911 1e-11 13_[+1]_57 chrVIII:132836-133408 1e-11 5_[-1]_65 chrX:523777-523877 1e-11 64_[-1]_6 chrII:226836-227388 1e-11 12_[+1]_58 chrIV:980806-981298 1e-11 23_[-1]_47 chrI:182360-182842 1e-11 22_[-1]_48 chrIII:227697-228240 4.1e-11 23_[+1]_47 chrIV:1150627-1151192 4.8e-11 52_[-1]_18 chrVI:191293-191859 4.8e-11 57_[-1]_13 chrXII:784146-784594 4.8e-11 33_[+1]_37 chrX:617693-617793 1.1e-10 43_[+1]_27 chrXII:731837-732320 1.1e-10 61_[+1]_9 chrVII:794156-794669 1.5e-10 54_[+1]_16 chrIV:884107-884642 5.3e-10 36_[+1]_34 chrXIII:420336-420909 9.6e-10 59_[-1]_11 chrVIII:85144-85594 9.6e-10 22_[-1]_48 chrX:378141-378241 9.6e-10 32_[+1]_38 chrVII:73640-74157 9.6e-10 24_[-1]_46 chrV:438467-438941 9.6e-10 45_[+1]_25 chrVII:412107-412619 9.6e-10 24_[-1]_46 chrXI:308001-308437 9.6e-10 18_[-1]_52 chrVI:137240-137778 1.7e-09 70_[-1] chrXI:74368-74895 1.7e-09 42_[+1]_28 chrVII:730900-731434 1.7e-09 19_[+1]_51 chrIII:127523-127912 1.7e-09 48_[+1]_22 chrVII:205279-205790 2.3e-09 36_[+1]_34 chrIV:1461564-1462131 2.3e-09 2_[-1]_68 chrXII:628158-628707 2.3e-09 [+1]_70 chrVII:857237-857689 2.3e-09 48_[-1]_22 chrXV:464190-464723 3.5e-09 43_[+1]_27 chrI:138939-139454 3.5e-09 5_[+1]_65 chrXII:92307-92842 3.5e-09 23_[+1]_47 chrXV:300814-301429 3.5e-09 25_[+1]_45 chrXIII:195857-196430 3.5e-09 47_[-1]_23 chrVI:101133-101667 3.5e-09 25_[+1]_45 chrVII:845437-845903 3.9e-09 28_[+1]_42 chrXVI:860145-860602 3.9e-09 55_[+1]_15 chrIV:992547-993082 3.9e-09 67_[+1]_3 chrXIII:183721-184178 3.9e-09 39_[-1]_31 chrXVI:571977-572553 3.9e-09 53_[+1]_17 chrIV:83337-83795 3.9e-09 31_[+1]_39 chrVII:876148-876698 7.1e-09 20_[+1]_50 chrXV:976160-976743 7.1e-09 19_[+1]_51 chrIX:300045-300563 7.1e-09 16_[-1]_54 chrXIII:480412-480897 7.1e-09 59_[-1]_11 chrIV:1352289-1352777 7.1e-09 25_[-1]_45 chrX:390862-390962 7.1e-09 44_[-1]_26 chrVII:185518-185986 7.1e-09 54_[-1]_16 chrX:414772-414872 7.1e-09 1_[+1]_69 chrX:422638-422738 7.1e-09 32_[+1]_38 chrXV:438393-438988 1.4e-08 2_[+1]_68 chrXI:578770-579258 1.4e-08 [+1]_70 chrIV:359329-359880 1.4e-08 22_[+1]_48 chrVIII:358297-358835 1.6e-08 23_[-1]_47 chrXVI:559983-560548 1.6e-08 44_[-1]_26 chrVIII:237670-238194 1.6e-08 27_[-1]_43 chrIV:520735-521202 4.1e-08 53_[+1]_17 chrIV:644985-645429 4.1e-08 37_[-1]_33 chrIV:802540-803055 4.1e-08 25_[-1]_45 chrV:250082-250578 4.1e-08 5_[+1]_65 chrIII:168104-168570 4.1e-08 55_[-1]_15 chrVII:828501-829032 7e-08 48_[-1]_22 chrXIII:747717-748209 7e-08 20_[-1]_50 chrVII:736122-736651 7e-08 3_[+1]_67 chrVII:405265-405755 7e-08 9_[+1]_61 chrX:355072-355172 7e-08 15_[+1]_55 chrII:405565-406212 7e-08 39_[+1]_31 chrV:130852-131379 9.4e-08 58_[-1]_12 chrIV:519508-520007 1e-07 35_[+1]_35 chrXI:83952-84439 1e-07 62_[+1]_8 chrV:492149-492620 1.3e-07 60_[-1]_10 chrVII:779354-779869 1.7e-07 54_[+1]_16 chrXV:594160-594690 1.7e-07 20_[-1]_50 chrXVI:435666-436243 2.1e-07 30_[-1]_40 chrVII:706906-707430 2.1e-07 31_[-1]_39 chrVIII:466723-467283 2.1e-07 36_[+1]_34 chrXVI:744074-744577 2.1e-07 8_[+1]_62 chrIV:51-377 3.9e-07 69_[-1]_1 chrIV:1256887-1257310 3.9e-07 1_[-1]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNYDTGGCCBAGTKGKTWARGSSHHVS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSBYNYDTGGCCBAGTKGKTWARGSSHHVS width=30 seqs=101 chrXII:734617-735063 ( 12) GGTCTCTTGGCCCAGTTGGTTAAGGCACCG 1 chrXVI:880080-880577 ( 62) GGTCTCTTGGCCCAGTTGGTTAAGGCACCG 1 chrV:551113-551565 ( 40) GGTCTCTTGGCCCAGTTGGTTAAGGCACCG 1 chrIX:183250-183734 ( 42) GGTCTCTTGGCCCAGTTGGTTAAGGCACCG 1 chrXVI:819280-819784 ( 47) GGTCTCTTGGCCCAGTTGGTTAAGGCACCG 1 chrIX:210460-210956 ( 7) GGTCTCTTGGCCCAGTTGGTTAAGGCACCG 1 chrV:443027-443558 ( 4) GGTCTCTTGGCCCAGTTGGTTAAGGCACCG 1 chrXII:1051861-1052376 ( 47) GGTCTCTTGGCCCAGTTGGTTAAGGCACCG 1 chrIV:667775-668305 ( 61) GGTCTCTTGGCCCAGTTGGTTAAGGCACCG 1 chrXVI:689325-689877 ( 14) GGCACTATGGCCGAGTGGTTAAGGCGACAG 1 chrV:288240-288763 ( 44) GGCACTATGGCCGAGTGGTTAAGGCGACAG 1 chrVI:204766-205200 ( 34) GGGCGTGTGGCGTAGTCGGTAGCGCGCTCC 1 chrX:197121-197221 ( 10) GGGCGTGTGGCGTAGTCGGTAGCGCGCTCC 1 chrVIII:115948-116397 ( 28) GCTTCTATGGCCAAGTTGGTAAGGCGCCAC 1 chrXV:113527-114039 ( 69) GCTTCTATGGCCAAGTTGGTAAGGCGCCAC 1 chrXIV:560460-561016 ( 48) GCTTCTATGGCCAAGTTGGTAAGGCGCCAC 1 chrII:266143-266695 ( 9) GCTTCTATGGCCAAGTTGGTAAGGCGCCAC 1 chrX:58914-59014 ( 40) GCTTCTATGGCCAAGTTGGTAAGGCGCCAC 1 chrIX:325506-326033 ( 29) GCTTCTATGGCCAAGTTGGTAAGGCGCCAC 1 chrIV:433983-434603 ( 64) GCTTCTATGGCCAAGTTGGTAAGGCGCCAC 1 chrXV:353840-354320 ( 54) GCTTCTATGGCCAAGTTGGTAAGGCGCCAC 1 chrIII:295269-295757 ( 21) GCTTCTATGGCCAAGTTGGTAAGGCGCCAC 1 chrIV:1305421-1305911 ( 14) GGCAACTTGGCCGAGTGGTTAAGGCGAAAG 1 chrVIII:132836-133408 ( 6) GGCAACTTGGCCGAGTGGTTAAGGCGAAAG 1 chrX:523777-523877 ( 65) GGCAACTTGGCCGAGTGGTTAAGGCGAAAG 1 chrII:226836-227388 ( 13) GGCAACTTGGCCGAGTGGTTAAGGCGAAAG 1 chrIV:980806-981298 ( 24) GGCAACTTGGCCGAGTGGTTAAGGCGAAAG 1 chrI:182360-182842 ( 23) GGCAACTTGGCCGAGTGGTTAAGGCGAAAG 1 chrIII:227697-228240 ( 24) GGCACTATGGCCGAGTGGTTAAGGCGAGAG 1 chrIV:1150627-1151192 ( 53) GTCCCAGTGGCCGAGTGGTTAAGGCGATGC 1 chrVI:191293-191859 ( 58) GTCCCAGTGGCCGAGTGGTTAAGGCGATGC 1 chrXII:784146-784594 ( 34) GTCCCAGTGGCCGAGTGGTTAAGGCGATGC 1 chrX:617693-617793 ( 44) GGGAGTTTGGCCGAGTGGTTTAAGGCGTCA 1 chrXII:731837-732320 ( 62) GGGAGTTTGGCCGAGTGGTTTAAGGCGTCA 1 chrVII:794156-794669 ( 55) GGGCACATGGCGCAGTTGGTAGCGCGCTTC 1 chrIV:884107-884642 ( 37) GCTCGTGTAGCTCAGTGGTTAGAGCTTCGT 1 chrXIII:420336-420909 ( 60) GGTTTCGTGGTCTAGTCGGTTATGGCATCT 1 chrVIII:85144-85594 ( 23) GGTTTCGTGGTCTAGTCGGTTATGGCATCT 1 chrX:378141-378241 ( 33) GGTTTCGTGGTCTAGTCGGTTATGGCATCT 1 chrVII:73640-74157 ( 25) GGTTTCGTGGTCTAGTCGGTTATGGCATCT 1 chrV:438467-438941 ( 46) GGTTTCGTGGTCTAGTCGGTTATGGCATCT 1 chrVII:412107-412619 ( 25) GGTTTCGTGGTCTAGTCGGTTATGGCATCT 1 chrXI:308001-308437 ( 19) GGTTTCGTGGTCTAGTCGGTTATGGCATCT 1 chrVI:137240-137778 ( 71) GACTCCATGGCCAAGTTGGTTAAGGCGTGC 1 chrXI:74368-74895 ( 43) GACTCCATGGCCAAGTTGGTTAAGGCGTGC 1 chrVII:730900-731434 ( 20) GACTCCATGGCCAAGTTGGTTAAGGCGTGC 1 chrIII:127523-127912 ( 49) GACTCCATGGCCAAGTTGGTTAAGGCGTGC 1 chrVII:205279-205790 ( 37) GGTTGTTTGGCCGAGCGGTCTAAGGCGCCT 1 chrIV:1461564-1462131 ( 3) GGTTGTTTGGCCGAGCGGTCTAAGGCGCCT 1 chrXII:628158-628707 ( 1) GGTTGTTTGGCCGAGCGGTCTAAGGCGCCT 1 chrVII:857237-857689 ( 49) GGTTGTTTGGCCGAGCGGTCTAAGGCGCCT 1 chrXV:464190-464723 ( 44) GGGCGTGTGGTCTAGTGGTATGATTCTCGC 1 chrI:138939-139454 ( 6) GGGCGTGTGGTCTAGTGGTATGATTCTCGC 1 chrXII:92307-92842 ( 24) GGGCGTGTGGTCTAGTGGTATGATTCTCGC 1 chrXV:300814-301429 ( 26) GGGCGTGTGGTCTAGTGGTATGATTCTCGC 1 chrXIII:195857-196430 ( 48) GGGCGTGTGGTCTAGTGGTATGATTCTCGC 1 chrVI:101133-101667 ( 26) GGGCGTGTGGTCTAGTGGTATGATTCTCGC 1 chrVII:845437-845903 ( 29) GCGCAAGTGGTTTAGTGGTAAAATCCAACG 1 chrXVI:860145-860602 ( 56) GCGCAAGTGGTTTAGTGGTAAAATCCAACG 1 chrIV:992547-993082 ( 68) GCGCAAGTGGTTTAGTGGTAAAATCCAACG 1 chrXIII:183721-184178 ( 40) GCGCAAGTGGTTTAGTGGTAAAATCCAACG 1 chrXVI:571977-572553 ( 54) GCGCAAGTGGTTTAGTGGTAAAATCCAACG 1 chrIV:83337-83795 ( 32) GCGCAAGTGGTTTAGTGGTAAAATCCAACG 1 chrVII:876148-876698 ( 21) GCCTTGTTGGCGCAATCGGTAGCGCGTATG 1 chrXV:976160-976743 ( 20) GCTTCAGTAGCTCAGTAGGAAGAGCGTCAG 1 chrIX:300045-300563 ( 17) GCCTTGTTGGCGCAATCGGTAGCGCGTATG 1 chrXIII:480412-480897 ( 60) GCCTTGTTGGCGCAATCGGTAGCGCGTATG 1 chrIV:1352289-1352777 ( 26) GCCTTGTTGGCGCAATCGGTAGCGCGTATG 1 chrX:390862-390962 ( 45) GCTTCAGTAGCTCAGTAGGAAGAGCGTCAG 1 chrVII:185518-185986 ( 55) GCCTTGTTGGCGCAATCGGTAGCGCGTATG 1 chrX:414772-414872 ( 2) GCCTTGTTGGCGCAATCGGTAGCGCGTATG 1 chrX:422638-422738 ( 33) GCTTCAGTAGCTCAGTAGGAAGAGCGTCAG 1 chrXV:438393-438988 ( 3) TCCTTGTTAGCTCAGTTGGTAGAGCGTTCG 1 chrXI:578770-579258 ( 1) TCCTTGTTAGCTCAGTTGGTAGAGCGTTCG 1 chrIV:359329-359880 ( 23) TCCTTGTTAGCTCAGTTGGTAGAGCGTTCG 1 chrVIII:358297-358835 ( 24) GCGGATTTAGCTCAGTTGGGAGAGCGCCAG 1 chrXVI:559983-560548 ( 45) GCGGATTTAGCTCAGTTGGGAGAGCGCCAG 1 chrVIII:237670-238194 ( 28) GCGGATTTAGCTCAGTTGGGAGAGCGCCAG 1 chrIV:520735-521202 ( 54) GGTCCTATAGTGTAGTGGTTATCACTTTCG 1 chrIV:644985-645429 ( 38) GGTCCTATAGTGTAGTGGTTATCACTTTCG 1 chrIV:802540-803055 ( 26) GGTCCTATAGTGTAGTGGTTATCACTTTCG 1 chrV:250082-250578 ( 6) GGTCCTATAGTGTAGTGGTTATCACTTTCG 1 chrIII:168104-168570 ( 56) GGTCCTATAGTGTAGTGGTTATCACTTTCG 1 chrVII:828501-829032 ( 49) GCTCGCGTGGCGTAATGGCAACGCGTCTGA 1 chrXIII:747717-748209 ( 21) GCTCGCGTGGCGTAATGGCAACGCGTCTGA 1 chrVII:736122-736651 ( 4) GCTCGCGTGGCGTAATGGCAACGCGTCTGA 1 chrVII:405265-405755 ( 10) GCTCGCGTGGCGTAATGGCAACGCGTCTGA 1 chrX:355072-355172 ( 16) GCTCGCGTGGCGTAATGGCAACGCGTCTGA 1 chrII:405565-406212 ( 40) GCTCGCGTGGCGTAATGGCAACGCGTCTGA 1 chrV:130852-131379 ( 59) GGTTTTATAGTGTAGTGGTTATCACTTTCG 1 chrIV:519508-520007 ( 36) GGAGGGTTGGCCGAGTGGTCTAAGGCGGCA 1 chrXI:83952-84439 ( 63) GGAGGGTTGGCCGAGTGGTCTAAGGCGGCA 1 chrV:492149-492620 ( 61) TTCCTCGTGGCCCAATGGTCACGGCGTCTG 1 chrVII:779354-779869 ( 55) GGGCGGTTAGTGTAGTGGTTATCATCCCAC 1 chrXV:594160-594690 ( 21) GCGCAAGTGGTTCAGTGGTTAGAATTTATG 1 chrXVI:435666-436243 ( 31) GCTCGTATGGCGCAGTGGTAGCGCAGCAGA 1 chrVII:706906-707430 ( 32) GCTCGTATGGCGCAGTGGTAGCGCAGCAGA 1 chrVIII:466723-467283 ( 37) GCCTCCTTAGCTTAGTGGTAGAGCGTTGCA 1 chrXVI:744074-744577 ( 9) GCCTCCTTAGCTTAGTGGTAGAGCGTTGCA 1 chrIV:51-377 ( 70) GAGTGGATGGTTGAGTGGGGCAGGGTAACG 1 chrIV:1256887-1257310 ( 2) GCGAAAGTGGTTCAGTGGTTAGAATTCATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNYDTGGCCBAGTKGKTWARGSSHHVS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 40044 bayes= 6.52621 E= 3.3e-380 -1330 -1330 233 -297 -264 116 135 -297 -396 54 32 59 -138 119 -194 36 -80 59 49 -21 -116 90 -56 28 -27 -1330 94 28 -1330 -1330 -1330 169 -72 -1330 209 -1330 -1330 -1330 239 -1330 -1330 190 -1330 -11 -1330 154 32 -57 -127 69 13 20 169 -1330 -1330 -1330 -127 -1330 219 -1330 -1330 -226 -1330 163 -338 -36 149 -11 -1330 -1330 239 -1330 -1330 -168 132 59 -32 -146 -226 106 99 -426 -226 12 89 -110 49 -216 53 -27 78 -216 -180 -94 186 -138 -396 146 94 -180 -1330 109 113 -80 16 38 -68 -11 -44 102 -194 12 -32 119 19 -164 -116 44 135 -138 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNYDTGGCCBAGTKGKTWARGSSHHVS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 101 E= 3.3e-380 0.000000 0.000000 0.960396 0.039604 0.049505 0.425743 0.485149 0.039604 0.019802 0.277228 0.237624 0.465347 0.118812 0.435644 0.049505 0.396040 0.178218 0.287129 0.267327 0.267327 0.138614 0.356436 0.128713 0.376238 0.257426 0.000000 0.366337 0.376238 0.000000 0.000000 0.000000 1.000000 0.188119 0.000000 0.811881 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.712871 0.000000 0.287129 0.000000 0.554455 0.237624 0.207921 0.128713 0.306931 0.207921 0.356436 1.000000 0.000000 0.000000 0.000000 0.128713 0.000000 0.871287 0.000000 0.000000 0.039604 0.000000 0.960396 0.029703 0.148515 0.534653 0.287129 0.000000 0.000000 1.000000 0.000000 0.000000 0.059406 0.475248 0.465347 0.247525 0.069307 0.039604 0.643564 0.613861 0.009901 0.039604 0.336634 0.574257 0.089109 0.267327 0.069307 0.445545 0.158416 0.326733 0.069307 0.089109 0.099010 0.693069 0.118812 0.019802 0.524752 0.366337 0.089109 0.000000 0.405941 0.415842 0.178218 0.346535 0.247525 0.118812 0.287129 0.227723 0.386139 0.049505 0.336634 0.247525 0.435644 0.217822 0.099010 0.138614 0.257426 0.485149 0.118812 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNYDTGGCCBAGTKGKTWARGSSHHVS MEME-1 regular expression -------------------------------------------------------------------------------- G[GC][TCG][CT][CGT][TC][TGA]TGG[CT][CGT][TCG]AGT[GT]G[GT][TA][AT][AG][AG]G[CG][GC][ATC][CTA][CAG][GC] -------------------------------------------------------------------------------- Time 313.50 secs. ******************************************************************************** ******************************************************************************** MOTIF TAAYCNKRRGRTCMBSGGTTCGAHYCCSS MEME-2 width = 29 sites = 66 llr = 1415 E-value = 8.8e-306 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAAYCNKRRGRTCMBSGGTTCGAHYCCSS MEME-2 Description -------------------------------------------------------------------------------- Simplified A 168::2146253:4::2::::2a2::::2 pos.-specific C 12:472:::1:184341:::a::34a765 probability G :1113355365::2568a:::8:2::143 matrix T 7::5:331:1:72:21::aa:::36:2:: bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 **** * * Relative 1.4 * * ****** * Entropy 1.2 * * ******* *** (30.9 bits) 1.0 * * * * ******** **** 0.7 *** *** ** ******** ***** 0.5 ***** ***************** ***** 0.2 ***** ***************** ***** 0.0 ----------------------------- Multilevel TAATCGGGAGATCAGGGGTTCGATTCCCC consensus C CGTTAG GATCCC A CC GG sequence T A A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAYCNKRRGRTCMBSGGTTCGAHYCCSS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXII:734617-735063 + 48 2.38e-14 ACCGTGCTAA TAACGCGGGGATCAGCGGTTCGATCCCGC TAGAGACCAT chrXVI:880080-880577 - 27 2.38e-14 ACCGTGCTAA TAACGCGGGGATCAGCGGTTCGATCCCGC TAGAGACCAT chrV:551113-551565 - 5 2.38e-14 ACCGTGCTAA TAACGCGGGGATCAGCGGTTCGATCCCGC TAGA chrIX:183250-183734 - 7 2.38e-14 ACCGTGCTAA TAACGCGGGGATCAGCGGTTCGATCCCGC TAGAGA chrIX:210460-210956 + 43 2.38e-14 ACCGTGCTAA TAACGCGGGGATCAGCGGTTCGATCCCGC TAGAGACCAT chrXII:1051861-1052376 - 12 2.38e-14 ACCGTGCTAA TAACGCGGGGATCAGCGGTTCGATCCCGC TAGAGACCAT chrIV:667775-668305 - 26 2.38e-14 ACCGTGCTAA TAACGCGGGGATCAGCGGTTCGATCCCGC TAGAGACCAT chrV:176855-177370 + 71 1.12e-13 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCCC G chrII:644976-645443 + 42 1.12e-13 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCCC GTATCGGAGT chrIV:1016902-1017542 - 44 1.12e-13 CATCACGTTC TCACCGTGGAGACCGGGGTTCGACTCCCC GCTTCGGAGT chrXVI:209899-210524 - 40 1.12e-13 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCCC GTATCGGAGT chrXI:140739-141379 - 18 1.12e-13 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCCC GTATCGGAGT chrVII:328319-328975 + 20 1.12e-13 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCCC GTATCGGAGT chrV:487120-487601 - 30 1.12e-13 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCCC GTATCGGAGT chrV:354674-355310 + 26 1.12e-13 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCCC GTATCGGAGT chrVII:876148-876698 + 56 1.14e-12 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCCCC TACAGGGCTT chrXIII:480412-480897 - 26 1.14e-12 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCCCC TACAGGGCTT chrVII:185518-185986 - 21 1.14e-12 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCCCC TACAGGGCTA chrX:414772-414872 + 37 1.14e-12 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCCCC TACAGGGCTA chrVII:828501-829032 - 16 4.13e-12 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCCA TCGTGAGTGC chrVII:736122-736651 + 38 4.13e-12 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCCA TCGTGAGTGT chrVII:405265-405755 + 44 4.13e-12 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCCA TCGTGAGTGC chrIV:568627-569248 + 29 4.13e-12 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCCA TCGTGAGTGC chrX:355072-355172 + 50 4.13e-12 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCCA TCGTGAGTGC chrIV:644985-645429 - 5 1.50e-11 CTTTCGGTTT TGATCCGGACAACCCCGGTTCGAATCCGG GTAG chrV:250082-250578 + 40 1.50e-11 CTTTCGGTTT TGATCCGGACAACCCCGGTTCGAATCCGG GTAGGACCTT chrIII:168104-168570 - 23 1.50e-11 CTTTCGGTTT TGATCCGGACAACCCCGGTTCGAATCCGG GTAGGACCTT chrXIV:560460-561016 - 14 1.69e-11 GCCACACTAG TAATGTGGAGATCATCGGTTCAAATCCGA TTGGAAGCAT chrII:266143-266695 + 44 1.69e-11 GCCACACTAG TAATGTGGAGATCATCGGTTCAAATCCGA TTGGAAGCAT chrX:58914-59014 - 6 1.69e-11 GCCACACTAG TAATGTGGAGATCATCGGTTCAAATCCGA TTGGA chrIX:325506-326033 + 64 1.69e-11 GCCACACTAG TAATGTGGAGATCATCGGTTCAAATCCGA TTGGAAGC chrIV:433983-434603 - 30 1.69e-11 GCCACACTAG TAATGTGGAGATCATCGGTTCAAATCCGA TTGGAAGCAT chrXV:353840-354320 - 20 1.69e-11 GCCACACTAG TAATGTGGAGATCATCGGTTCAAATCCGA TTGGAAGCAT chrIII:295269-295757 + 56 1.69e-11 GCCACACTAG TAATGTGGAGATCATCGGTTCAAATCCGA TTGGAAGCAT chrV:130852-131379 - 26 3.40e-11 CTTTCGGTTT TGATCCGAACAACCCCGGTTCGAATCCGG GTAAGACCTA chrVII:845437-845903 + 62 9.02e-11 TCCAACGTTG CCATCGTTGGGCCCCCGGTTCGATTCCGG GCTTGCGCAA chrXIII:183721-184178 - 8 9.02e-11 TCCAACGTTG CCATCGTTGGGCCCCCGGTTCGATTCCGG GCTTGCG chrIV:83337-83795 + 65 9.02e-11 TCCAACGTTG CCATCGTTGGGCCCCCGGTTCGATTCCGG GCTTGCG chrX:354038-354138 + 34 1.00e-10 TACCACTACG AAATCTTGAGATCGGGCGTTCGACTCGCC CCCGGGAGAT chrX:542749-542849 - 5 1.00e-10 TATCACTACG AAATCTTGAGATCGGGCGTTCGACTCGCC CCCG chrVI:210427-210912 - 9 1.00e-10 TACCACTACG AAATCTTGAGATCGGGCGTTCGACTCGCC CCCGGGAG chrIV:946098-946621 + 54 1.00e-10 TATCACTACG AAATCTTGAGATCGGGCGTTCGACTCGCC CCCGGGAGAT chrXIII:168561-169135 + 48 1.00e-10 TACCACTACG AAATCTTGAGATCGGGCGTTCGACTCGCC CCCGGGAGAT chrXV:976160-976743 + 55 1.35e-10 GTCAGTCTCA TAATCTGAAGGTCGAGAGTTCGAACCTCC CCTGGAGCAA chrX:390862-390962 - 11 1.35e-10 GTCAGTCTCA TAATCTGAAGGTCGAGAGTTCGAACCTCC CCTGGAGCAT chrX:422638-422738 + 68 1.35e-10 GTCAGTCTCA TAATCTGAAGGTCGAGAGTTCGAACCTCC CCTG chrIII:123398-123835 - 20 3.19e-10 TCTCGCTTAG GGTGCGGGAGGTCCCGGGTTCGAGTCCCG GCTCGCCCCA chrXVI:768939-769514 - 40 4.18e-10 TTAAGCAAGG ATACCGAAATGTCAGGGGTTCGAGCCCCC TATGAGGAGT chrXV:438393-438988 + 61 4.18e-10 TTAAGCAAGG ATACCGAAATGTCAGGGGTTCGAGCCCCC TATGAGGAGT chrXI:578770-579258 + 59 4.18e-10 TTAAGCAAGG ATACCGAAATGTCAGGGGTTCGAGCCCCC TATGAGGAGT chrXIV:96037-96523 - 20 9.00e-10 TCCCACCCTT CCAAGGTGGGGACACGGGTTCGATTCTCG TACCGCTCAA chrVI:137240-137778 - 36 1.06e-09 GTGCGACTGT TAATCGCAAGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrVII:730900-731434 + 56 1.06e-09 GTGCGACTGT TAATCGCAAGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrI:138939-139454 + 71 4.55e-09 GAAGACAAAG CATGCGAGAGGCCCTGGGTTCAATTCCCA G chrXII:426930-427391 + 56 5.90e-09 TGGGCGCTTG TCGCGTGCCAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrXIII:463286-463959 + 16 5.90e-09 TGGGCGCTTG TCGCGTGCCAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrIX:324046-324581 - 49 5.90e-09 TGGGCGCTTG TCGCGTGCCAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrVIII:466723-467283 + 71 7.12e-09 GTTGCACTTG TAATGCAAAGGTCGCTAGTTCAATTCTGG C chrXIII:420336-420909 - 25 7.57e-09 ATCTGCTTAA CACGCAGAACGTCCCCAGTTCGATCCTGG GCGAAATCAT chrXI:379479-380003 + 25 7.57e-09 ATCTGCTTAA CACGCAGAACGTCCCCAGTTCGATCCTGG GCGAAATCAA chrX:378141-378241 + 69 7.57e-09 ATCTGCTTAA CACGCAGAACGTCCCCAGTTCGATCCTGG GCG chrXVI:744074-744577 + 43 1.29e-08 GTTGCACTTG TAATGCAAAGGTCGTTAGTTCAATTCTGA CAGGTGGCAA chrXII:818414-818857 + 58 2.21e-08 TGCATTCTTC CGGTGGCTGTGATCCGGGTTCGAGTCCCG GGAGGAGCTT chrV:492149-492620 - 27 3.97e-08 GTCTGGCTAC GAACCAGAAGATTCCAGGTTCAAGTCCTG GCGGGGAAGG chrXIII:362858-363387 + 26 6.74e-08 CACATCGTTG TGGCCGATGAAACCCTGGTTCGATTCTAG GAGATGGCAT chrVII:319574-320056 + 50 6.74e-08 CACATCGTTG TGGCCGATGAAACCCTGGTTCGATTCTAG GAGATGGCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAYCNKRRGRTCMBSGGTTCGAHYCCSS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:734617-735063 2.4e-14 47_[+2]_24 chrXVI:880080-880577 2.4e-14 26_[-2]_45 chrV:551113-551565 2.4e-14 4_[-2]_67 chrIX:183250-183734 2.4e-14 6_[-2]_65 chrIX:210460-210956 2.4e-14 42_[+2]_29 chrXII:1051861-1052376 2.4e-14 11_[-2]_60 chrIV:667775-668305 2.4e-14 25_[-2]_46 chrV:176855-177370 1.1e-13 70_[+2]_1 chrII:644976-645443 1.1e-13 41_[+2]_30 chrIV:1016902-1017542 1.1e-13 43_[-2]_28 chrXVI:209899-210524 1.1e-13 39_[-2]_32 chrXI:140739-141379 1.1e-13 17_[-2]_54 chrVII:328319-328975 1.1e-13 19_[+2]_52 chrV:487120-487601 1.1e-13 29_[-2]_42 chrV:354674-355310 1.1e-13 25_[+2]_46 chrVII:876148-876698 1.1e-12 55_[+2]_16 chrXIII:480412-480897 1.1e-12 25_[-2]_46 chrVII:185518-185986 1.1e-12 20_[-2]_51 chrX:414772-414872 1.1e-12 36_[+2]_35 chrVII:828501-829032 4.1e-12 15_[-2]_56 chrVII:736122-736651 4.1e-12 37_[+2]_34 chrVII:405265-405755 4.1e-12 43_[+2]_28 chrIV:568627-569248 4.1e-12 28_[+2]_43 chrX:355072-355172 4.1e-12 49_[+2]_22 chrIV:644985-645429 1.5e-11 4_[-2]_67 chrV:250082-250578 1.5e-11 39_[+2]_32 chrIII:168104-168570 1.5e-11 22_[-2]_49 chrXIV:560460-561016 1.7e-11 13_[-2]_58 chrII:266143-266695 1.7e-11 43_[+2]_28 chrX:58914-59014 1.7e-11 5_[-2]_66 chrIX:325506-326033 1.7e-11 63_[+2]_8 chrIV:433983-434603 1.7e-11 29_[-2]_42 chrXV:353840-354320 1.7e-11 19_[-2]_52 chrIII:295269-295757 1.7e-11 55_[+2]_16 chrV:130852-131379 3.4e-11 25_[-2]_46 chrVII:845437-845903 9e-11 61_[+2]_10 chrXIII:183721-184178 9e-11 7_[-2]_64 chrIV:83337-83795 9e-11 64_[+2]_7 chrX:354038-354138 1e-10 33_[+2]_38 chrX:542749-542849 1e-10 4_[-2]_67 chrVI:210427-210912 1e-10 8_[-2]_63 chrIV:946098-946621 1e-10 53_[+2]_18 chrXIII:168561-169135 1e-10 47_[+2]_24 chrXV:976160-976743 1.4e-10 54_[+2]_17 chrX:390862-390962 1.4e-10 10_[-2]_61 chrX:422638-422738 1.4e-10 67_[+2]_4 chrIII:123398-123835 3.2e-10 19_[-2]_52 chrXVI:768939-769514 4.2e-10 39_[-2]_32 chrXV:438393-438988 4.2e-10 60_[+2]_11 chrXI:578770-579258 4.2e-10 58_[+2]_13 chrXIV:96037-96523 9e-10 19_[-2]_52 chrVI:137240-137778 1.1e-09 35_[-2]_36 chrVII:730900-731434 1.1e-09 55_[+2]_16 chrI:138939-139454 4.5e-09 70_[+2]_1 chrXII:426930-427391 5.9e-09 55_[+2]_16 chrXIII:463286-463959 5.9e-09 15_[+2]_56 chrIX:324046-324581 5.9e-09 48_[-2]_23 chrVIII:466723-467283 7.1e-09 70_[+2]_1 chrXIII:420336-420909 7.6e-09 24_[-2]_47 chrXI:379479-380003 7.6e-09 24_[+2]_47 chrX:378141-378241 7.6e-09 68_[+2]_3 chrXVI:744074-744577 1.3e-08 42_[+2]_29 chrXII:818414-818857 2.2e-08 57_[+2]_14 chrV:492149-492620 4e-08 26_[-2]_45 chrXIII:362858-363387 6.7e-08 25_[+2]_46 chrVII:319574-320056 6.7e-08 49_[+2]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAYCNKRRGRTCMBSGGTTCGAHYCCSS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAAYCNKRRGRTCMBSGGTTCGAHYCCSS width=29 seqs=66 chrXII:734617-735063 ( 48) TAACGCGGGGATCAGCGGTTCGATCCCGC 1 chrXVI:880080-880577 ( 27) TAACGCGGGGATCAGCGGTTCGATCCCGC 1 chrV:551113-551565 ( 5) TAACGCGGGGATCAGCGGTTCGATCCCGC 1 chrIX:183250-183734 ( 7) TAACGCGGGGATCAGCGGTTCGATCCCGC 1 chrIX:210460-210956 ( 43) TAACGCGGGGATCAGCGGTTCGATCCCGC 1 chrXII:1051861-1052376 ( 12) TAACGCGGGGATCAGCGGTTCGATCCCGC 1 chrIV:667775-668305 ( 26) TAACGCGGGGATCAGCGGTTCGATCCCGC 1 chrV:176855-177370 ( 71) TCACCGTGGAGACCGGGGTTCGACTCCCC 1 chrII:644976-645443 ( 42) TCACCGTGGAGACCGGGGTTCGACTCCCC 1 chrIV:1016902-1017542 ( 44) TCACCGTGGAGACCGGGGTTCGACTCCCC 1 chrXVI:209899-210524 ( 40) TCACCGTGGAGACCGGGGTTCGACTCCCC 1 chrXI:140739-141379 ( 18) TCACCGTGGAGACCGGGGTTCGACTCCCC 1 chrVII:328319-328975 ( 20) TCACCGTGGAGACCGGGGTTCGACTCCCC 1 chrV:487120-487601 ( 30) TCACCGTGGAGACCGGGGTTCGACTCCCC 1 chrV:354674-355310 ( 26) TCACCGTGGAGACCGGGGTTCGACTCCCC 1 chrVII:876148-876698 ( 56) TAATCATAAGGTTAGGGGTTCGAGCCCCC 1 chrXIII:480412-480897 ( 26) TAATCATAAGGTTAGGGGTTCGAGCCCCC 1 chrVII:185518-185986 ( 21) TAATCATAAGGTTAGGGGTTCGAGCCCCC 1 chrX:414772-414872 ( 37) TAATCATAAGGTTAGGGGTTCGAGCCCCC 1 chrVII:828501-829032 ( 16) TAATCAGAAGATTATGGGTTCGACCCCCA 1 chrVII:736122-736651 ( 38) TAATCAGAAGATTATGGGTTCGACCCCCA 1 chrVII:405265-405755 ( 44) TAATCAGAAGATTATGGGTTCGACCCCCA 1 chrIV:568627-569248 ( 29) TAATCAGAAGATTATGGGTTCGACCCCCA 1 chrX:355072-355172 ( 50) TAATCAGAAGATTATGGGTTCGACCCCCA 1 chrIV:644985-645429 ( 5) TGATCCGGACAACCCCGGTTCGAATCCGG 1 chrV:250082-250578 ( 40) TGATCCGGACAACCCCGGTTCGAATCCGG 1 chrIII:168104-168570 ( 23) TGATCCGGACAACCCCGGTTCGAATCCGG 1 chrXIV:560460-561016 ( 14) TAATGTGGAGATCATCGGTTCAAATCCGA 1 chrII:266143-266695 ( 44) TAATGTGGAGATCATCGGTTCAAATCCGA 1 chrX:58914-59014 ( 6) TAATGTGGAGATCATCGGTTCAAATCCGA 1 chrIX:325506-326033 ( 64) TAATGTGGAGATCATCGGTTCAAATCCGA 1 chrIV:433983-434603 ( 30) TAATGTGGAGATCATCGGTTCAAATCCGA 1 chrXV:353840-354320 ( 20) TAATGTGGAGATCATCGGTTCAAATCCGA 1 chrIII:295269-295757 ( 56) TAATGTGGAGATCATCGGTTCAAATCCGA 1 chrV:130852-131379 ( 26) TGATCCGAACAACCCCGGTTCGAATCCGG 1 chrVII:845437-845903 ( 62) CCATCGTTGGGCCCCCGGTTCGATTCCGG 1 chrXIII:183721-184178 ( 8) CCATCGTTGGGCCCCCGGTTCGATTCCGG 1 chrIV:83337-83795 ( 65) CCATCGTTGGGCCCCCGGTTCGATTCCGG 1 chrX:354038-354138 ( 34) AAATCTTGAGATCGGGCGTTCGACTCGCC 1 chrX:542749-542849 ( 5) AAATCTTGAGATCGGGCGTTCGACTCGCC 1 chrVI:210427-210912 ( 9) AAATCTTGAGATCGGGCGTTCGACTCGCC 1 chrIV:946098-946621 ( 54) AAATCTTGAGATCGGGCGTTCGACTCGCC 1 chrXIII:168561-169135 ( 48) AAATCTTGAGATCGGGCGTTCGACTCGCC 1 chrXV:976160-976743 ( 55) TAATCTGAAGGTCGAGAGTTCGAACCTCC 1 chrX:390862-390962 ( 11) TAATCTGAAGGTCGAGAGTTCGAACCTCC 1 chrX:422638-422738 ( 68) TAATCTGAAGGTCGAGAGTTCGAACCTCC 1 chrIII:123398-123835 ( 20) GGTGCGGGAGGTCCCGGGTTCGAGTCCCG 1 chrXVI:768939-769514 ( 40) ATACCGAAATGTCAGGGGTTCGAGCCCCC 1 chrXV:438393-438988 ( 61) ATACCGAAATGTCAGGGGTTCGAGCCCCC 1 chrXI:578770-579258 ( 59) ATACCGAAATGTCAGGGGTTCGAGCCCCC 1 chrXIV:96037-96523 ( 20) CCAAGGTGGGGACACGGGTTCGATTCTCG 1 chrVI:137240-137778 ( 36) TAATCGCAAGATCGTGAGTTCAACCCTCA 1 chrVII:730900-731434 ( 56) TAATCGCAAGATCGTGAGTTCAACCCTCA 1 chrI:138939-139454 ( 71) CATGCGAGAGGCCCTGGGTTCAATTCCCA 1 chrXII:426930-427391 ( 56) TCGCGTGCCAGATCGGGGTTCAATTCCCC 1 chrXIII:463286-463959 ( 16) TCGCGTGCCAGATCGGGGTTCAATTCCCC 1 chrIX:324046-324581 ( 49) TCGCGTGCCAGATCGGGGTTCAATTCCCC 1 chrVIII:466723-467283 ( 71) TAATGCAAAGGTCGCTAGTTCAATTCTGG 1 chrXIII:420336-420909 ( 25) CACGCAGAACGTCCCCAGTTCGATCCTGG 1 chrXI:379479-380003 ( 25) CACGCAGAACGTCCCCAGTTCGATCCTGG 1 chrX:378141-378241 ( 69) CACGCAGAACGTCCCCAGTTCGATCCTGG 1 chrXVI:744074-744577 ( 43) TAATGCAAAGGTCGTTAGTTCAATTCTGA 1 chrXII:818414-818857 ( 58) CGGTGGCTGTGATCCGGGTTCGAGTCCCG 1 chrV:492149-492620 ( 27) GAACCAGAAGATTCCAGGTTCAAGTCCTG 1 chrXIII:362858-363387 ( 26) TGGCCGATGAAACCCTGGTTCGATTCTAG 1 chrVII:319574-320056 ( 50) TGGCCGATGAAACCCTGGTTCGATTCTAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAYCNKRRGRTCMBSGGTTCGAHYCCSS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 40608 bayes= 8.45237 E= 8.8e-306 -135 -48 -265 120 97 26 -65 -277 143 -207 -107 -335 -435 93 -133 82 -1269 184 74 -1269 -65 5 81 -18 -135 -207 144 4 23 -207 139 -177 100 -207 81 -1269 -65 -84 174 -235 69 -1269 139 -1269 -10 -165 -1269 107 -1269 205 -1269 -55 40 110 -7 -1269 -277 44 126 -35 -435 93 156 -235 -103 -133 202 -1269 -1269 -1269 239 -1269 -1269 -1269 -1269 169 -1269 -1269 -1269 169 -1269 239 -1269 -1269 -35 -1269 199 -1269 169 -1269 -1269 -1269 -55 67 -33 11 -1269 110 -1269 93 -1269 239 -1269 -1269 -1269 193 -133 -65 -335 156 105 -435 -35 139 44 -1269 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAYCNKRRGRTCMBSGGTTCGAHYCCSS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 66 E= 8.8e-306 0.121212 0.136364 0.030303 0.712121 0.606061 0.227273 0.121212 0.045455 0.833333 0.045455 0.090909 0.030303 0.015152 0.363636 0.075758 0.545455 0.000000 0.681818 0.318182 0.000000 0.196970 0.196970 0.333333 0.272727 0.121212 0.045455 0.515152 0.318182 0.363636 0.045455 0.500000 0.090909 0.621212 0.045455 0.333333 0.000000 0.196970 0.106061 0.636364 0.060606 0.500000 0.000000 0.500000 0.000000 0.287879 0.060606 0.000000 0.651515 0.000000 0.787879 0.000000 0.212121 0.409091 0.409091 0.181818 0.000000 0.045455 0.257576 0.454545 0.242424 0.015152 0.363636 0.560606 0.060606 0.151515 0.075758 0.772727 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.242424 0.000000 0.757576 0.000000 1.000000 0.000000 0.000000 0.000000 0.212121 0.303030 0.151515 0.333333 0.000000 0.409091 0.000000 0.590909 0.000000 1.000000 0.000000 0.000000 0.000000 0.727273 0.075758 0.196970 0.030303 0.560606 0.393939 0.015152 0.242424 0.500000 0.257576 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAYCNKRRGRTCMBSGGTTCGAHYCCSS MEME-2 regular expression -------------------------------------------------------------------------------- T[AC]A[TC][CG][GT][GT][GA][AG]G[AG][TA][CT][AC][GCT][GC]GGTTC[GA]A[TCA][TC]CC[CG][CGA] -------------------------------------------------------------------------------- Time 591.21 secs. ******************************************************************************** ******************************************************************************** MOTIF RARRTGTAYGGRTGTAW MEME-3 width = 17 sites = 91 llr = 1050 E-value = 8.3e-099 ******************************************************************************** -------------------------------------------------------------------------------- Motif RARRTGTAYGGRTGTAW MEME-3 Description -------------------------------------------------------------------------------- Simplified A 4536:::7:1:4::155 pos.-specific C 11::::215:::::2:1 probability G 32541a:2:996:8122 matrix T 221:9:8:5:1:a1622 bits 2.4 * 2.2 * * 1.9 * * 1.7 * ** * Relative 1.4 * ** ** Entropy 1.2 *** ** ** (16.7 bits) 1.0 **** ***** 0.7 *********** 0.5 ************ 0.2 *************** 0.0 ----------------- Multilevel AAGATGTATGGGTGTAA consensus GTAG GC A CGT sequence TG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARRTGTAYGGRTGTAW MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------- chrIV:221925-222337 + 52 7.60e-09 AAATGAGATA AGGGTGTACGGGTGTGG TAACCGTCGT chrII:592867-593302 + 49 3.28e-08 ATGGAGTTCA AAGATGTATGGATGCAA GAAAAGAGGT chrVIII:382862-383412 + 12 4.08e-08 ATTTATTTTC ATGATGTATGGGTGTAT CGGATGTTCG chrII:89626-89965 + 54 4.08e-08 GGTGTTAAAG AGGGTGTATGGATGTAA AGTCACAAAA chrXIII:5239-5895 - 56 6.04e-08 GGATTGTGTT AGGGTGTGTGGGTGTGG TGTGTGGGTG chrXII:5385-5993 - 25 6.04e-08 TGGTGTGGGT GTGGTGTGTGGGTGTGG TGTATATATA chrXII:1064803-1065406 + 37 6.04e-08 GTGTGTGTGT GTGGTGTGTGGGTGTGG TGGGTGTGGT chrIV:1355692-1356043 + 20 7.26e-08 AAAAATACTA TAAATGTATGGGTGTAA TTTTAACCGA chrXII:710643-710886 - 17 7.26e-08 AACGCAAAAT GAGATGCGTGGGTGTGA TTCCTGCTTG chrXIII:224041-224409 + 13 8.76e-08 AAATTTCAAA AAAATGTATGGATGTAA AATTCAGTAG chrXIII:225318-225785 - 42 1.04e-07 AATAAAAAAT AGAATGTACGGATGTAA TGCACGGATG chrIX:68157-68559 - 40 1.04e-07 ATACATCTTA GTAATGTACGGATGTAA TAAACTCAAA chrV:396183-396605 - 33 1.23e-07 TGGGTTCACA AAAGTGTACGGATGTAT ACAACAGGGA chrII:415472-415901 + 45 1.23e-07 TCTGGATGAC AAAATGCATGGGTGTAA AAAAGGAAAT chrIV:538897-539278 - 66 1.44e-07 AGGATTGAAT GAGGGGTGTGGGTGTGA TAATTCATGT chrXVI:280009-280251 - 32 1.69e-07 TCGGAATTGT GAGGTGCACGGATGCGG ACTTCTCCTT chrVIII:125858-126344 - 49 1.69e-07 TGTAAAGATG TAGGTGTACGGATGCAT TAACGTCTTT chrII:605700-606161 - 34 1.98e-07 GGTGATGGTG AAGATGTACAGGTGTAA AACTGTCAGA chrIV:341229-341640 + 57 1.98e-07 ACTGGGTGTT AAAATGTACGGATGGAA AAGTAGACTC chrXII:650956-651309 - 56 1.98e-07 GCTACCATGA GAAATGTGTGGGTGTTG AGATAATTGT chrXII:282479-282884 - 24 1.98e-07 ACGGAGGGAA AAGATGTACAGGTGTAA AAAAGCACCC chrXII:932019-932545 + 25 1.98e-07 TTTTTGTGTA CAGATGTACGGATGTAC GGATGTACGG chrXIII:731958-732476 - 37 2.29e-07 CCACACATGC GCGATGTGCGGATGTAT TATGTCTTGA chrVIII:505783-506247 + 34 3.04e-07 ATGTCTGGGT GAAATGTATGGATGCAT AATTGTCTCG chrVI:221702-222113 + 61 3.04e-07 TTGGGTGTTA AAAATGTACGGGTGAAA AAAGTCTTAT chrVII:254040-254578 - 67 3.49e-07 TGCATATTGA AAGATGTATGGGTTCAA AAATGTCCGT chrV:110517-110833 - 51 3.49e-07 GTTGTCTATT GAGGTGTCTGGGTGTGT TTGTCACATT chrVI:223897-224221 + 46 3.49e-07 TGGGTCTAAG AGTATGTACGGATGTAA AAGAAAACAG chrV:85071-85518 - 54 3.99e-07 GGAATACATC GAGGGGTATGGGTGGAT GATATCACTG chrIX:254203-254591 + 9 4.52e-07 CGGCAATT AGAATGTGTGGGTGCGG AAGCTCGCCG chrXII:241546-242042 - 61 4.52e-07 GTTTACATTT TATATGTACGGATGTAA AAAGGGAAAT chrXIII:551316-551825 + 6 5.13e-07 AACTA TAAATGTATGGGTGCGT AATGTACAGA chrXII:262738-263135 - 77 5.81e-07 ATTAACA TAAATGTATGGATGTAT TATTAAATGT chrIV:217071-217596 - 29 6.57e-07 ATTATAGAAT AAAATGTACGGGTTCAA AGCAGGGCCT chrXII:922067-922576 - 72 6.57e-07 CGAGAATTGG AATATGTACGGGTGTCA ATTTCAAACG chrXVI:794446-794831 - 65 6.57e-07 CGATAATATA AATATGTATGGGTGTTT GGAGATGTTC chrIV:229460-229808 - 68 7.39e-07 TATAATCCTT CTGATGTACGGATGTTT TGTGTAAGAT chrIV:130532-130993 + 35 7.39e-07 AGAAAGCTAT AAAATGTGCGGATGTTT GTATATGTCA chrXI:382148-382523 - 18 7.39e-07 TGTGTTGGGT GTGATGTCCGGATGCAA CAGCAGCAAA chrIV:1359303-1359857 - 64 7.39e-07 GCATGGGTGC GTAATGTACGGATGTTT AATGTCTTTT chrXII:781383-781907 + 59 8.29e-07 TGGGTTTATG AAAATGCACGGATGCAT TTTCTCTAGA chrXV:94438-94859 - 35 9.30e-07 ACCGAAGACA ATAATGCATGGGTGTTA ATTCTATTTT chrVII:149082-149557 + 47 9.30e-07 TATGTATGGG TGGGTGTATGGATGCTG TAAGCACAGT chrIV:358093-358429 + 36 1.04e-06 TCCTTGTCAG ATAATGTATGGGTGGTG TGTACACCAA chrXV:901425-901732 + 10 1.16e-06 CGGAAACGT AAAATGTACGGGTGAAC AGTCCCGAAA chrIII:163403-163932 + 28 1.16e-06 CAGCCGCGGT TGGGTGCGTGGGTGCGG TAATTTAACG chrVIII:148918-149333 + 5 1.29e-06 TCCA ATGGTGCATGGGTGAAA ATGTATGGGC chrIV:1401210-1401626 - 63 1.44e-06 AAAAGGGTAA TATATGTGTGGGTGGAA AATGATTGGG chrVII:534679-535289 + 68 1.78e-06 ATGGGTTACA CAAATGCACGGATGCAT ATATAAAATA chrV:53462-54022 - 25 1.78e-06 CCGAACACCA AATATGTGTGGGTGTCA AACAAAGAGA chrX:391792-391892 - 59 1.97e-06 CCCGCTCGCA GGGAGGTCTGGGTGTGG GGCGTGTGCG chrV:423075-423515 - 25 1.97e-06 TTGGGTGTAG AAGGTGTACGGAGGTAA ATATGCAGCA chrXVI:731883-732377 - 22 1.97e-06 CCAACCATCC TAAAGGTATGGGTGTAC TGACGATGCG chrXIII:124298-124740 + 42 2.18e-06 ATACATTTTA ATAATGTACGGATTTAA TAGCAGTCTT chrXI:313228-313709 - 76 2.18e-06 TATTCAAC CAGATGTGCAGATGTAA CCAAAAACTT chrIV:835732-836274 - 9 2.41e-06 ACTTTGAGCT GAGGTGTGCGGTTGCGG GGCGTGGG chrXI:618782-619247 + 45 2.66e-06 ACAAATCTAT TAGAGGCACGGATGGAA ATAGTATTTA chrVII:277028-277427 - 48 2.66e-06 TCCCATAGAG CGGGTGTATGGGTCTAG CTTAAATACA chrXV:161101-161417 + 35 2.66e-06 TATAGGAATC CCGATGTATGGGTTTGG TTGCCAGAAA chrXII:424001-424576 - 68 2.94e-06 GTGCACCACA GCAATGTACGTGTGTAG CGACTTACGC chrVII:438521-438921 + 62 2.94e-06 TCAAAAATAT GTGGTGCACAGATGTAA CGTTCCAAAA chrXIII:552867-553211 - 82 3.23e-06 AT GAGATGTATGGGTCTCA TGAATAACGG chrIV:1300861-1301377 - 38 3.56e-06 CCAAACATCC ACAGTGCACGGATGTTT GAAGGAAAAT chrXII:1012096-1012410 - 33 4.30e-06 ACATTTGCGT GTGGTGCATGGGTTCTA TTCCTCATTA chrV:23482-23946 - 31 4.71e-06 TATTAAATGA GAAATGTGGGGGTGGGG TATGCGTTTC chrIV:411226-411694 - 23 4.71e-06 CTTTGGGTGC CCGGGGTGTGGGTGTTT GATTTGTTTC chrXIV:495174-495641 + 36 5.15e-06 TTGGGTGTGT ATAGTGTACGGATTGAA TATGTCAAGG chrVII:310427-310962 - 40 5.64e-06 GTGTGGGTCC CTGGTGTACAGATGTTA CATTGGTTAC chrXII:1028151-1028629 - 56 5.64e-06 CCCATACATT TTGGTGCATGGGTGATA TTTTGTCTTT chrXII:48655-49116 + 66 6.17e-06 AAGGGTGTCT AAGATGTACGGATCTTC ATTGGGATGG chrXV:253772-254161 + 60 6.74e-06 ATTTATACGC GCGGTGTACGGATTAAA AAAGTTTTGT chrXVI:575153-575382 - 81 6.74e-06 GTT CTTGTGTGTGGGTGCTT CAGGCAAAGA chrXV:167918-168487 + 34 9.45e-06 TAAACTTAAA TATAGGCACGGGTGTTT AAAGCCGCCC chrXII:897657-898131 - 15 9.45e-06 ATGGGTTTTT TGGAGGTACAGGTGTTG TAGAATTCTG chrIX:257342-257759 - 31 9.45e-06 TCACAACTTT GCGGTGTACAGATGTCG TCACATACCG chrVIII:175012-175555 - 7 9.45e-06 AAGACTGGGT GTGATGCGGGGGTGGGG GTGTGC chrX:90055-90155 - 30 1.03e-05 TGTATGGGTG AGAATGTCCAGGTGCAA ATTGAAAAGG chrXI:158194-158629 - 37 1.03e-05 ATTTATTTCC AGTGTGCACGGGTTGAA ATAAATGAAT chrXV:968052-968446 + 68 1.03e-05 TCAAAAGCGT GGGGTGCGTGGGCGTGC GCTGCTCGAG chrVIII:296832-297241 - 69 1.11e-05 AGAGCATGCT GTGATGTACTGGTGGAC GAAATTGTGA chrIV:307985-308424 - 68 1.20e-05 ATTGCCTGCA TATATGTAAGGATGTAA CAGGAAATGT chrV:490988-491521 - 14 1.41e-05 CTCCCGCAGG TGGGTGTGCGGGCGCTC AGCCTGCTAT chrVII:479277-479998 + 48 1.90e-05 CCAGCTTCGG TGTGTGTGTGTGTGTGA AGCTAAGAGT chrXII:257810-257987 - 35 2.05e-05 TATATGTACC TATATGTATGTATGTAT GTGCGTACGA chrII:167865-168244 - 46 2.20e-05 TCCGTTTTCC AAGAGGTACTGGTGAAA AATATGTCTG chrV:354674-355310 + 81 2.53e-05 TTGACATCAT ACAGTGTATGTATGGGG TTA chrVIII:103866-104288 - 28 2.71e-05 AAAATAACAA AAAATGTGTGGGCTGAA AACCGTCTTT chrXVI:76275-76738 - 15 2.91e-05 GACCATGACC GAGAGGTCTGGTTGCGA AAGACGCACA chrVII:483254-483723 + 11 4.05e-05 GGTTCTACGT CTCGTGTATGGGTTTAT TTCTGCGGTA chrXII:899297-899613 + 73 4.90e-05 TGTACTTAGT CCGAGGTATGTATGCTA AGATTAGAGG chrXVI:699892-700421 - 26 5.21e-05 GGGATTGGGT GTGATGTAAGGATTCGC GGTCCTCGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARRTGTAYGGRTGTAW MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:221925-222337 7.6e-09 51_[+3]_32 chrII:592867-593302 3.3e-08 48_[+3]_35 chrVIII:382862-383412 4.1e-08 11_[+3]_72 chrII:89626-89965 4.1e-08 53_[+3]_30 chrXIII:5239-5895 6e-08 55_[-3]_28 chrXII:5385-5993 6e-08 24_[-3]_59 chrXII:1064803-1065406 6e-08 36_[+3]_47 chrIV:1355692-1356043 7.3e-08 19_[+3]_64 chrXII:710643-710886 7.3e-08 16_[-3]_67 chrXIII:224041-224409 8.8e-08 12_[+3]_71 chrXIII:225318-225785 1e-07 41_[-3]_42 chrIX:68157-68559 1e-07 39_[-3]_44 chrV:396183-396605 1.2e-07 32_[-3]_51 chrII:415472-415901 1.2e-07 44_[+3]_39 chrIV:538897-539278 1.4e-07 65_[-3]_18 chrXVI:280009-280251 1.7e-07 31_[-3]_52 chrVIII:125858-126344 1.7e-07 48_[-3]_35 chrII:605700-606161 2e-07 33_[-3]_50 chrIV:341229-341640 2e-07 56_[+3]_27 chrXII:650956-651309 2e-07 55_[-3]_28 chrXII:282479-282884 2e-07 23_[-3]_60 chrXII:932019-932545 2e-07 24_[+3]_59 chrXIII:731958-732476 2.3e-07 36_[-3]_47 chrVIII:505783-506247 3e-07 33_[+3]_50 chrVI:221702-222113 3e-07 60_[+3]_23 chrVII:254040-254578 3.5e-07 66_[-3]_17 chrV:110517-110833 3.5e-07 50_[-3]_33 chrVI:223897-224221 3.5e-07 45_[+3]_38 chrV:85071-85518 4e-07 53_[-3]_30 chrIX:254203-254591 4.5e-07 8_[+3]_75 chrXII:241546-242042 4.5e-07 60_[-3]_23 chrXIII:551316-551825 5.1e-07 5_[+3]_78 chrXII:262738-263135 5.8e-07 76_[-3]_7 chrIV:217071-217596 6.6e-07 28_[-3]_55 chrXII:922067-922576 6.6e-07 71_[-3]_12 chrXVI:794446-794831 6.6e-07 64_[-3]_19 chrIV:229460-229808 7.4e-07 67_[-3]_16 chrIV:130532-130993 7.4e-07 34_[+3]_49 chrXI:382148-382523 7.4e-07 17_[-3]_66 chrIV:1359303-1359857 7.4e-07 63_[-3]_20 chrXII:781383-781907 8.3e-07 58_[+3]_25 chrXV:94438-94859 9.3e-07 34_[-3]_49 chrVII:149082-149557 9.3e-07 46_[+3]_37 chrIV:358093-358429 1e-06 35_[+3]_48 chrXV:901425-901732 1.2e-06 9_[+3]_74 chrIII:163403-163932 1.2e-06 27_[+3]_56 chrVIII:148918-149333 1.3e-06 4_[+3]_79 chrIV:1401210-1401626 1.4e-06 62_[-3]_21 chrVII:534679-535289 1.8e-06 67_[+3]_16 chrV:53462-54022 1.8e-06 24_[-3]_59 chrX:391792-391892 2e-06 58_[-3]_25 chrV:423075-423515 2e-06 24_[-3]_59 chrXVI:731883-732377 2e-06 21_[-3]_62 chrXIII:124298-124740 2.2e-06 41_[+3]_42 chrXI:313228-313709 2.2e-06 75_[-3]_8 chrIV:835732-836274 2.4e-06 8_[-3]_75 chrXI:618782-619247 2.7e-06 44_[+3]_39 chrVII:277028-277427 2.7e-06 47_[-3]_36 chrXV:161101-161417 2.7e-06 34_[+3]_49 chrXII:424001-424576 2.9e-06 67_[-3]_16 chrVII:438521-438921 2.9e-06 61_[+3]_22 chrXIII:552867-553211 3.2e-06 81_[-3]_2 chrIV:1300861-1301377 3.6e-06 37_[-3]_46 chrXII:1012096-1012410 4.3e-06 32_[-3]_51 chrV:23482-23946 4.7e-06 30_[-3]_53 chrIV:411226-411694 4.7e-06 22_[-3]_61 chrXIV:495174-495641 5.2e-06 35_[+3]_48 chrVII:310427-310962 5.6e-06 39_[-3]_44 chrXII:1028151-1028629 5.6e-06 55_[-3]_28 chrXII:48655-49116 6.2e-06 65_[+3]_18 chrXV:253772-254161 6.7e-06 59_[+3]_24 chrXVI:575153-575382 6.7e-06 80_[-3]_3 chrXV:167918-168487 9.5e-06 33_[+3]_50 chrXII:897657-898131 9.5e-06 14_[-3]_69 chrIX:257342-257759 9.5e-06 30_[-3]_53 chrVIII:175012-175555 9.5e-06 6_[-3]_77 chrX:90055-90155 1e-05 29_[-3]_54 chrXI:158194-158629 1e-05 36_[-3]_47 chrXV:968052-968446 1e-05 67_[+3]_16 chrVIII:296832-297241 1.1e-05 68_[-3]_15 chrIV:307985-308424 1.2e-05 67_[-3]_16 chrV:490988-491521 1.4e-05 13_[-3]_70 chrVII:479277-479998 1.9e-05 47_[+3]_36 chrXII:257810-257987 2e-05 34_[-3]_49 chrII:167865-168244 2.2e-05 45_[-3]_38 chrV:354674-355310 2.5e-05 80_[+3]_3 chrVIII:103866-104288 2.7e-05 27_[-3]_56 chrXVI:76275-76738 2.9e-05 14_[-3]_69 chrVII:483254-483723 4e-05 10_[+3]_73 chrXII:899297-899613 4.9e-05 72_[+3]_11 chrXVI:699892-700421 5.2e-05 25_[-3]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARRTGTAYGGRTGTAW MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RARRTGTAYGGRTGTAW width=17 seqs=91 chrIV:221925-222337 ( 52) AGGGTGTACGGGTGTGG 1 chrII:592867-593302 ( 49) AAGATGTATGGATGCAA 1 chrVIII:382862-383412 ( 12) ATGATGTATGGGTGTAT 1 chrII:89626-89965 ( 54) AGGGTGTATGGATGTAA 1 chrXIII:5239-5895 ( 56) AGGGTGTGTGGGTGTGG 1 chrXII:5385-5993 ( 25) GTGGTGTGTGGGTGTGG 1 chrXII:1064803-1065406 ( 37) GTGGTGTGTGGGTGTGG 1 chrIV:1355692-1356043 ( 20) TAAATGTATGGGTGTAA 1 chrXII:710643-710886 ( 17) GAGATGCGTGGGTGTGA 1 chrXIII:224041-224409 ( 13) AAAATGTATGGATGTAA 1 chrXIII:225318-225785 ( 42) AGAATGTACGGATGTAA 1 chrIX:68157-68559 ( 40) GTAATGTACGGATGTAA 1 chrV:396183-396605 ( 33) AAAGTGTACGGATGTAT 1 chrII:415472-415901 ( 45) AAAATGCATGGGTGTAA 1 chrIV:538897-539278 ( 66) GAGGGGTGTGGGTGTGA 1 chrXVI:280009-280251 ( 32) GAGGTGCACGGATGCGG 1 chrVIII:125858-126344 ( 49) TAGGTGTACGGATGCAT 1 chrII:605700-606161 ( 34) AAGATGTACAGGTGTAA 1 chrIV:341229-341640 ( 57) AAAATGTACGGATGGAA 1 chrXII:650956-651309 ( 56) GAAATGTGTGGGTGTTG 1 chrXII:282479-282884 ( 24) AAGATGTACAGGTGTAA 1 chrXII:932019-932545 ( 25) CAGATGTACGGATGTAC 1 chrXIII:731958-732476 ( 37) GCGATGTGCGGATGTAT 1 chrVIII:505783-506247 ( 34) GAAATGTATGGATGCAT 1 chrVI:221702-222113 ( 61) AAAATGTACGGGTGAAA 1 chrVII:254040-254578 ( 67) AAGATGTATGGGTTCAA 1 chrV:110517-110833 ( 51) GAGGTGTCTGGGTGTGT 1 chrVI:223897-224221 ( 46) AGTATGTACGGATGTAA 1 chrV:85071-85518 ( 54) GAGGGGTATGGGTGGAT 1 chrIX:254203-254591 ( 9) AGAATGTGTGGGTGCGG 1 chrXII:241546-242042 ( 61) TATATGTACGGATGTAA 1 chrXIII:551316-551825 ( 6) TAAATGTATGGGTGCGT 1 chrXII:262738-263135 ( 77) TAAATGTATGGATGTAT 1 chrIV:217071-217596 ( 29) AAAATGTACGGGTTCAA 1 chrXII:922067-922576 ( 72) AATATGTACGGGTGTCA 1 chrXVI:794446-794831 ( 65) AATATGTATGGGTGTTT 1 chrIV:229460-229808 ( 68) CTGATGTACGGATGTTT 1 chrIV:130532-130993 ( 35) AAAATGTGCGGATGTTT 1 chrXI:382148-382523 ( 18) GTGATGTCCGGATGCAA 1 chrIV:1359303-1359857 ( 64) GTAATGTACGGATGTTT 1 chrXII:781383-781907 ( 59) AAAATGCACGGATGCAT 1 chrXV:94438-94859 ( 35) ATAATGCATGGGTGTTA 1 chrVII:149082-149557 ( 47) TGGGTGTATGGATGCTG 1 chrIV:358093-358429 ( 36) ATAATGTATGGGTGGTG 1 chrXV:901425-901732 ( 10) AAAATGTACGGGTGAAC 1 chrIII:163403-163932 ( 28) TGGGTGCGTGGGTGCGG 1 chrVIII:148918-149333 ( 5) ATGGTGCATGGGTGAAA 1 chrIV:1401210-1401626 ( 63) TATATGTGTGGGTGGAA 1 chrVII:534679-535289 ( 68) CAAATGCACGGATGCAT 1 chrV:53462-54022 ( 25) AATATGTGTGGGTGTCA 1 chrX:391792-391892 ( 59) GGGAGGTCTGGGTGTGG 1 chrV:423075-423515 ( 25) AAGGTGTACGGAGGTAA 1 chrXVI:731883-732377 ( 22) TAAAGGTATGGGTGTAC 1 chrXIII:124298-124740 ( 42) ATAATGTACGGATTTAA 1 chrXI:313228-313709 ( 76) CAGATGTGCAGATGTAA 1 chrIV:835732-836274 ( 9) GAGGTGTGCGGTTGCGG 1 chrXI:618782-619247 ( 45) TAGAGGCACGGATGGAA 1 chrVII:277028-277427 ( 48) CGGGTGTATGGGTCTAG 1 chrXV:161101-161417 ( 35) CCGATGTATGGGTTTGG 1 chrXII:424001-424576 ( 68) GCAATGTACGTGTGTAG 1 chrVII:438521-438921 ( 62) GTGGTGCACAGATGTAA 1 chrXIII:552867-553211 ( 82) GAGATGTATGGGTCTCA 1 chrIV:1300861-1301377 ( 38) ACAGTGCACGGATGTTT 1 chrXII:1012096-1012410 ( 33) GTGGTGCATGGGTTCTA 1 chrV:23482-23946 ( 31) GAAATGTGGGGGTGGGG 1 chrIV:411226-411694 ( 23) CCGGGGTGTGGGTGTTT 1 chrXIV:495174-495641 ( 36) ATAGTGTACGGATTGAA 1 chrVII:310427-310962 ( 40) CTGGTGTACAGATGTTA 1 chrXII:1028151-1028629 ( 56) TTGGTGCATGGGTGATA 1 chrXII:48655-49116 ( 66) AAGATGTACGGATCTTC 1 chrXV:253772-254161 ( 60) GCGGTGTACGGATTAAA 1 chrXVI:575153-575382 ( 81) CTTGTGTGTGGGTGCTT 1 chrXV:167918-168487 ( 34) TATAGGCACGGGTGTTT 1 chrXII:897657-898131 ( 15) TGGAGGTACAGGTGTTG 1 chrIX:257342-257759 ( 31) GCGGTGTACAGATGTCG 1 chrVIII:175012-175555 ( 7) GTGATGCGGGGGTGGGG 1 chrX:90055-90155 ( 30) AGAATGTCCAGGTGCAA 1 chrXI:158194-158629 ( 37) AGTGTGCACGGGTTGAA 1 chrXV:968052-968446 ( 68) GGGGTGCGTGGGCGTGC 1 chrVIII:296832-297241 ( 69) GTGATGTACTGGTGGAC 1 chrIV:307985-308424 ( 68) TATATGTAAGGATGTAA 1 chrV:490988-491521 ( 14) TGGGTGTGCGGGCGCTC 1 chrVII:479277-479998 ( 48) TGTGTGTGTGTGTGTGA 1 chrXII:257810-257987 ( 35) TATATGTATGTATGTAT 1 chrII:167865-168244 ( 46) AAGAGGTACTGGTGAAA 1 chrV:354674-355310 ( 81) ACAGTGTATGTATGGGG 1 chrVIII:103866-104288 ( 28) AAAATGTGTGGGCTGAA 1 chrXVI:76275-76738 ( 15) GAGAGGTCTGGTTGCGA 1 chrVII:483254-483723 ( 11) CTCGTGTATGGGTTTAT 1 chrXII:899297-899613 ( 73) CCGAGGTATGTATGCTA 1 chrXVI:699892-700421 ( 26) GTGATGTAAGGATTCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARRTGTAYGGRTGTAW MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 17 n= 47376 bayes= 10.0777 E= 8.3e-099 35 -66 64 -73 68 -94 -11 -42 9 -411 147 -123 104 -1315 93 -1315 -1315 -1315 -66 151 -1315 -1315 239 -1315 -1315 -3 -1315 139 118 -179 34 -1315 -381 131 -311 64 -182 -1315 222 -381 -1315 -1315 231 -249 43 -1315 156 -381 -1315 -253 -411 163 -1315 -253 215 -136 -223 28 -53 88 74 -211 28 -57 58 -111 21 -42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARRTGTAYGGRTGTAW MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 17 nsites= 91 E= 8.3e-099 0.395604 0.120879 0.296703 0.186813 0.494505 0.098901 0.175824 0.230769 0.329670 0.010989 0.527473 0.131868 0.637363 0.000000 0.362637 0.000000 0.000000 0.000000 0.120879 0.879121 0.000000 0.000000 1.000000 0.000000 0.000000 0.186813 0.000000 0.813187 0.703297 0.054945 0.241758 0.000000 0.021978 0.472527 0.021978 0.483516 0.087912 0.000000 0.890110 0.021978 0.000000 0.000000 0.945055 0.054945 0.417582 0.000000 0.560440 0.021978 0.000000 0.032967 0.010989 0.956044 0.000000 0.032967 0.846154 0.120879 0.065934 0.230769 0.131868 0.571429 0.516484 0.043956 0.230769 0.208791 0.461538 0.087912 0.219780 0.230769 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARRTGTAYGGRTGTAW MEME-3 regular expression -------------------------------------------------------------------------------- [AG][AT][GA][AG]TGT[AG][TC]GG[GA]TG[TC][AGT][ATG] -------------------------------------------------------------------------------- Time 863.06 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVIII:125858-126344 1.39e-03 48_[-3(1.69e-07)]_35 chrIV:538897-539278 1.83e-05 65_[-3(1.44e-07)]_18 chrV:354674-355310 2.13e-11 25_[+2(1.12e-13)]_26_[+3(2.53e-05)]_\ 3 chrX:374196-374296 5.81e-03 25_[-1(1.49e-05)]_45 chrXV:619094-619517 3.68e-01 100 chrXII:932019-932545 1.43e-03 24_[+3(1.98e-07)]_24_[+3(7.39e-07)]_\ 18 chrVI:221702-222113 9.65e-04 60_[+3(3.04e-07)]_23 chrVIII:452442-453023 9.98e-01 100 chrVII:480193-480670 9.36e-01 100 chrVI:101133-101667 1.47e-06 25_[+1(3.53e-09)]_45 chrIII:127523-127912 2.03e-05 48_[+1(1.68e-09)]_22 chrVII:882462-884039 9.95e-02 100 chrVIII:296832-297241 4.16e-03 68_[-3(1.11e-05)]_15 chrX:703228-703328 7.18e-01 100 chrXVI:303483-303959 4.41e-01 100 chrI:182360-182842 2.22e-07 22_[-1(1.00e-11)]_48 chrXVI:67037-67259 4.89e-02 100 chrXI:308001-308437 1.17e-05 18_[-1(9.58e-10)]_52 chrXIV:718414-718890 8.19e-01 100 chrXII:48655-49116 2.81e-02 65_[+3(6.17e-06)]_18 chrXIII:626458-626881 9.14e-01 100 chrVII:412107-412619 1.09e-05 24_[-1(9.58e-10)]_46 chrXVI:731883-732377 2.47e-03 21_[-3(1.97e-06)]_62 chrIV:1489143-1489677 9.98e-01 100 chrXV:445250-445436 3.05e-01 100 chrIII:168104-168570 8.72e-13 22_[-2(1.50e-11)]_4_[-1(4.06e-08)]_\ 15 chrXV:670128-670604 9.94e-01 100 chrII:140499-140667 3.30e-01 100 chrVII:544420-544870 5.81e-03 23_[-1(1.49e-05)]_47 chrVII:811184-811660 7.68e-01 100 chrIX:131719-132195 1.36e-01 52_[-3(7.03e-05)]_2_[-3(7.45e-05)]_\ 12 chrXIII:837674-838196 3.38e-02 42_[+1(3.48e-05)]_28 chrXI:326272-327633 3.21e-02 60_[-1(5.01e-05)]_10 chrXII:241546-242042 1.74e-03 60_[-3(4.52e-07)]_4_[-3(1.52e-05)]_\ 2 chrXII:26-342 4.62e-01 100 chrXII:91509-91985 9.32e-01 100 chrVII:438521-438921 1.03e-02 61_[+3(2.94e-06)]_22 chrXVI:303997-304280 8.82e-01 100 chrX:422638-422738 4.60e-12 32_[+1(7.06e-09)]_5_[+2(1.35e-10)]_\ 4 chrII:405565-406212 3.83e-04 39_[+1(6.97e-08)]_31 chrVIII:4995-5665 8.90e-01 100 chrVIII:379565-379863 1.32e-02 100 chrXV:281839-282429 2.65e-01 100 chrXII:282479-282884 2.00e-03 23_[-3(1.98e-07)]_[-3(1.03e-05)]_43 chrIV:1236735-1236995 5.13e-01 100 chrXVI:434034-434326 9.83e-01 100 chrIV:914228-914704 9.33e-01 100 chrX:156765-156865 9.88e-01 100 chrV:487120-487601 1.73e-10 29_[-2(1.12e-13)]_42 chrXII:232193-234253 2.34e-01 100 chrIX:255009-255485 7.34e-01 100 chrVIII:48134-48628 5.32e-01 100 chrVII:803313-803789 7.99e-01 100 chrXVI:75422-75625 1.52e-01 100 chrXII:793706-795208 7.79e-01 100 chrXVI:280009-280251 7.76e-04 31_[-3(1.69e-07)]_52 chrVII:919819-920254 6.23e-01 100 chrX:414772-414872 4.28e-14 1_[+1(7.06e-09)]_5_[+2(1.14e-12)]_\ 35 chrIV:217071-217663 3.24e-01 100 chrXIII:168561-169135 2.76e-07 47_[+2(1.00e-10)]_24 chrXII:198930-199641 8.75e-02 100 chrVIII:386344-386599 5.87e-01 100 chrXIV:6455-7460 8.02e-01 100 chrXVI:404259-404567 3.64e-02 100 chrIV:83337-83795 3.77e-12 31_[+1(3.91e-09)]_3_[+2(9.02e-11)]_\ 7 chrXV:520536-521039 1.33e-01 100 chrIV:359329-359880 3.41e-05 22_[+1(1.35e-08)]_48 chrIV:509143-509495 9.64e-01 100 chrV:79006-79482 9.65e-01 100 chrII:104-299 6.05e-01 100 chrXIII:25015-25618 3.30e-01 100 chrV:362156-362525 2.63e-01 100 chrXIV:88861-89804 6.03e-01 100 chrXIV:776736-777077 4.71e-01 100 chrXI:109660-109982 9.98e-01 100 chrXII:611653-612119 2.34e-01 100 chrVII:730900-731434 1.61e-11 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chrXV:900247-900723 3.46e-01 100 chrXIV:351881-352364 8.14e-01 100 chrII:135926-136336 5.55e-02 70_[-2(4.67e-05)]_1 chrVII:702768-703374 9.91e-01 100 chrXI:141745-142221 4.29e-01 100 chrIV:217071-217596 1.13e-03 28_[-3(6.57e-07)]_55 chrXIV:301657-302119 3.60e-01 100 chrXVI:810376-810928 3.34e-01 100 chrIV:341229-341640 9.13e-05 56_[+3(1.98e-07)]_27 chrVII:600896-601372 5.87e-01 100 chrXIII:510815-511184 1.19e-01 100 chrXIV:502749-503225 2.08e-01 100 chrI:138939-139454 2.71e-11 5_[+1(3.53e-09)]_35_[+2(4.55e-09)]_\ 1 chrXIII:183721-184178 3.30e-12 7_[-2(9.02e-11)]_3_[-1(3.91e-09)]_\ 31 chrXII:815548-816024 3.05e-01 100 chrXV:113527-114039 1.48e-07 68_[+1(7.13e-12)]_2 chrVII:970404-970880 5.92e-01 100 chrVII:405265-405755 2.68e-12 9_[+1(6.97e-08)]_4_[+2(4.13e-12)]_\ 28 chrXV:161266-161742 4.56e-01 100 chrXV:832394-832690 9.98e-01 100 chrXII:1064803-1065406 3.69e-05 3_[+3(1.98e-07)]_16_[+3(6.04e-08)]_\ 9_[+3(6.17e-06)]_1_[+3(6.17e-06)]_3 chrXI:83952-84439 7.79e-06 62_[+1(1.00e-07)]_8 chrIX:210460-210956 3.06e-20 6_[+1(6.29e-14)]_6_[+2(2.38e-14)]_\ 29 chrIX:300045-300563 2.62e-05 16_[-1(7.06e-09)]_54 chrVII:483254-483723 2.38e-03 10_[+3(4.05e-05)]_11_[+2(4.43e-05)]_\ 33 chrXVI:819280-819784 1.95e-09 46_[+1(6.29e-14)]_24 chrIV:722423-722803 7.74e-02 100 chrXIII:751337-751456 6.17e-03 100 chrXIV:174277-174671 8.81e-01 100 chrX:354038-354138 7.15e-07 33_[+2(1.00e-10)]_38 chrVII:736122-736651 2.68e-12 3_[+1(6.97e-08)]_4_[+2(4.13e-12)]_\ 34 chrXV:89388-89864 9.23e-01 100 chrXII:5385-5993 6.39e-05 24_[-3(6.04e-08)]_13_[-3(5.81e-07)]_\ [-3(4.52e-07)]_12 chrXII:1017814-1018137 9.83e-01 100 chrXII:372724-373200 9.93e-01 100 chrII:605700-606161 6.50e-05 33_[-3(1.98e-07)]_50 chrXIII:549983-550199 7.29e-01 100 chrXIII:761855-762250 8.94e-01 100 chrXI:382148-382523 1.21e-04 17_[-3(7.39e-07)]_66 chrXV:22280-22403 6.42e-01 100 chrVII:779354-779869 1.68e-04 54_[+1(1.74e-07)]_16 chrXI:158194-158629 3.12e-02 36_[-3(1.03e-05)]_4_[-3(4.60e-05)]_\ 26 chrXIII:224041-224409 4.49e-04 12_[+3(8.76e-08)]_8_[+3(7.99e-06)]_\ 46 chrIV:1300861-1301377 1.25e-02 37_[-3(3.56e-06)]_46 chrXV:253029-253505 4.75e-01 100 chrXVI:587297-587600 4.29e-01 100 chrIII:168951-169262 4.74e-01 100 chrV:61016-62201 5.99e-01 100 chrXV:464190-464723 6.64e-07 43_[+1(3.53e-09)]_27 chrXV:438393-438988 5.95e-12 2_[+1(1.35e-08)]_28_[+2(4.18e-10)]_\ 11 chrIV:470281-470757 2.60e-01 100 chrVII:29-227 5.32e-02 100 chrI:20701-21177 2.39e-01 100 chrIV:802540-803055 2.80e-05 25_[-1(4.06e-08)]_45 chrVII:277028-277427 9.81e-03 47_[-3(2.66e-06)]_36 chrIV:992547-993082 2.37e-05 67_[+1(3.91e-09)]_3 chrXI:7841-8125 2.96e-01 100 chrXII:784146-784594 5.74e-07 33_[+1(4.79e-11)]_37 chrXII:950510-950787 2.30e-01 100 chrIV:644985-645429 2.71e-13 4_[-2(1.50e-11)]_4_[-1(4.06e-08)]_\ 33 chrXII:817746-818222 3.62e-01 100 chrIV:1239398-1239874 1.83e-01 100 chrXV:976160-976743 4.60e-12 19_[+1(7.06e-09)]_5_[+2(1.35e-10)]_\ 17 chrXII:1064097-1064843 1.39e-01 100 chrV:53462-54022 3.77e-03 24_[-3(1.78e-06)]_59 chrIV:533-885 4.55e-01 100 chrIV:1155871-1156347 9.86e-01 100 chrXII:731837-732320 3.19e-07 61_[+1(1.13e-10)]_9 chrXII:962825-963385 5.64e-01 100 chrVII:73640-74157 1.13e-05 24_[-1(9.58e-10)]_46 chrII:235773-235990 8.98e-01 100 chrXIII:162403-162710 6.65e-01 100 chrXVI:515884-516360 3.52e-01 100 chrXVI:435666-436243 2.36e-04 30_[-1(2.12e-07)]_40 chrXI:28-1126 1.89e-02 40_[-1(5.53e-05)]_30 chrV:29212-29688 9.16e-01 100 chrXVI:575982-576458 5.71e-01 100 chrXII:242502-242715 8.88e-01 100 chrXIII:306052-307090 1.14e-01 100 chrV:140285-140921 4.23e-02 100 chrVI:191293-191859 1.83e-07 57_[-1(4.79e-11)]_13 chrIV:520735-521202 1.69e-06 17_[-2(9.47e-05)]_7_[+1(4.06e-08)]_\ 17 chrX:378141-378241 5.02e-11 32_[+1(9.58e-10)]_6_[+2(7.57e-09)]_\ 3 chrXV:900736-900995 8.70e-01 100 chrVIII:115948-116397 1.75e-08 27_[-1(7.13e-12)]_43 chrXVI:577317-577545 8.38e-01 100 chrXI:618782-619247 2.09e-03 44_[+3(2.66e-06)]_39 chrVII:205279-205790 5.31e-06 36_[+1(2.32e-09)]_34 chrX:90055-90155 4.33e-02 29_[-3(1.03e-05)]_54 chrVII:997984-998460 1.68e-01 100 chrXV:987321-987797 2.32e-01 100 chrVIII:55330-55722 3.06e-01 100 chrXII:818414-818857 4.31e-07 23_[+1(2.32e-05)]_4_[+2(2.21e-08)]_\ 14 chrIV:221925-222337 2.53e-05 27_[+3(3.55e-05)]_7_[+3(7.60e-09)]_\ 32 chrVIII:385363-385617 9.10e-01 100 chrVII:477770-478246 3.08e-01 100 chrXIII:5239-5895 1.39e-04 23_[-3(6.04e-08)]_2_[-3(6.04e-08)]_\ 41 chrIV:519508-520007 2.09e-05 35_[+1(1.00e-07)]_35 chrIV:1305421-1305911 1.99e-08 13_[+1(1.00e-11)]_57 chrXIV:577028-577504 2.47e-01 100 chrII:644976-645443 1.73e-10 41_[+2(1.12e-13)]_30 chrXIV:505536-505870 7.15e-01 100 chrXIV:500349-500799 3.02e-01 100 chrI:68330-68836 4.56e-01 100 chrVI:4383-5696 6.88e-01 100 chrIV:1150627-1151192 2.62e-07 52_[-1(4.79e-11)]_18 chrX:519419-519519 9.22e-01 100 chrXVI:860145-860602 2.68e-05 55_[+1(3.91e-09)]_15 chrIV:357352-357711 6.75e-02 100 chrIX:183250-183734 3.06e-20 6_[-2(2.38e-14)]_6_[-1(6.29e-14)]_\ 29 chrXIV:442807-443349 1.02e-01 100 chrXV:905869-906100 5.50e-01 100 chrIX:254203-254591 4.50e-04 8_[+3(4.52e-07)]_75 chrV:551113-551565 3.06e-20 4_[-2(2.38e-14)]_6_[-1(6.29e-14)]_\ 31 chrVII:534679-535289 2.72e-03 67_[+3(1.78e-06)]_16 chrVIII:85144-85594 1.14e-05 22_[-1(9.58e-10)]_48 chrIV:509934-510410 7.80e-01 100 chrI:73289-73576 9.54e-01 100 chrXII:1060911-1061387 6.11e-02 100 chrX:224007-224107 5.35e-01 100 chrXIII:747717-748209 3.45e-04 20_[-1(6.97e-08)]_50 chrV:176855-177370 1.73e-10 70_[+2(1.12e-13)]_1 chrV:492149-492620 2.67e-08 26_[-2(3.97e-08)]_5_[-1(1.33e-07)]_\ 10 chrXIII:124298-124740 1.29e-02 23_[-3(3.91e-06)]_1_[+3(2.18e-06)]_\ 42 chrIX:23703-24179 6.73e-01 100 chrXVI:829840-830040 9.94e-01 100 chrVII:845437-845903 3.65e-12 28_[+1(3.91e-09)]_3_[+2(9.02e-11)]_\ 10 chrIII:292601-293008 5.09e-01 100 chrII:375953-376236 7.24e-02 100 chrII:373159-373410 5.12e-01 100 chrXVI:242399-242875 3.47e-01 100 chrIX:336190-336662 5.81e-03 14_[-1(1.49e-05)]_56 chrIV:1468250-1468375 7.80e-01 100 chrXV:725089-725592 8.50e-01 100 chrXVI:880080-880577 3.06e-20 26_[-2(2.38e-14)]_6_[-1(6.29e-14)]_\ 9 chrXIII:362858-363387 6.27e-04 25_[+2(6.74e-08)]_46 chrIV:976021-976572 3.79e-01 100 chrI:72606-73061 4.70e-01 100 chrXVI:694416-694892 2.99e-01 100 chrV:23482-23946 6.97e-03 30_[-3(4.71e-06)]_53 chrX:391792-391892 5.23e-04 58_[-3(1.97e-06)]_25 chrX:617693-617793 8.13e-08 43_[+1(1.13e-10)]_27 chrX:139201-139301 3.93e-01 100 chrXII:639925-640062 7.80e-01 100 chrXII:734617-735063 3.06e-20 11_[+1(6.29e-14)]_6_[+2(2.38e-14)]_\ 24 chrXII:636933-637107 3.86e-02 100 chrXII:837626-839478 6.07e-01 100 chrXI:356084-356439 4.19e-01 100 chrXVI:768939-769514 2.60e-07 39_[-2(4.18e-10)]_32 chrII:235148-235359 7.34e-01 100 chrIV:651799-652275 8.45e-01 100 chrIV:1401210-1401626 3.83e-03 62_[-3(1.44e-06)]_21 chrXV:94438-94859 5.12e-03 34_[-3(9.30e-07)]_49 chrXI:617664-617997 3.70e-01 100 chrIII:30-1399 2.05e-01 100 chrI:198467-198743 5.90e-01 100 chrVII:828501-829032 2.68e-12 15_[-2(4.13e-12)]_4_[-1(6.97e-08)]_\ 22 chrIX:137992-139216 1.40e-01 [+3(9.85e-05)]_83 chrVI:137240-137778 1.07e-11 35_[-2(1.06e-09)]_6_[-1(1.68e-09)] chrIV:130532-130993 2.93e-03 34_[+3(7.39e-07)]_49 chrXV:622779-622974 1.33e-01 100 chrXII:424001-424576 2.47e-03 67_[-3(2.94e-06)]_16 chrXI:379479-380003 2.91e-05 24_[+2(7.57e-09)]_47 chrIII:123398-123835 7.11e-10 19_[-2(3.19e-10)]_4_[-1(2.30e-06)]_\ 18 chrXI:258355-259009 1.74e-02 100 chrVIII:237670-238194 1.13e-04 27_[-1(1.62e-08)]_43 chrVII:598716-599192 2.11e-02 63_[-1(3.26e-05)]_7 chrVIII:103866-104288 7.65e-02 27_[-3(2.71e-05)]_56 chrIII:177159-177597 4.70e-01 100 chrI:71985-72322 5.24e-01 100 chrXII:263047-263579 6.95e-01 100 chrXV:167918-168487 1.11e-02 33_[+3(9.45e-06)]_2_[-3(2.36e-05)]_\ 31 chrXI:68135-68481 1.88e-01 100 chrV:174685-175025 6.30e-01 100 chrV:85896-86187 1.17e-01 100 chrXV:161688-162021 1.01e-02 100 chrXIV:776854-777330 8.72e-01 100 chrXII:637165-637513 6.72e-01 100 chrIV:1441215-1441691 5.94e-01 100 chrII:592867-593302 1.34e-04 31_[+3(6.25e-05)]_[+3(3.28e-08)]_35 chrVII:254040-254578 6.59e-04 66_[-3(3.49e-07)]_17 chrXVI:559983-560548 7.48e-05 44_[-1(1.62e-08)]_26 chrVII:700473-701303 9.98e-01 100 chrXV:978752-979161 1.67e-01 100 chrIV:229460-229808 4.89e-03 43_[-3(1.29e-06)]_7_[-3(7.39e-07)]_\ 16 chrVII:920883-921107 9.54e-01 100 chrVII:959350-959614 6.55e-01 100 chrXIII:420336-420909 5.02e-11 24_[-2(7.57e-09)]_6_[-1(9.58e-10)]_\ 11 chrXVI:942340-942830 3.59e-03 41_[+1(1.77e-05)]_29 chrXI:519514-519825 1.56e-01 100 chrXI:163431-164016 4.43e-02 100 chrXII:899297-899613 1.24e-01 72_[+3(4.90e-05)]_11 chrI:180913-181495 1.04e-01 100 chrXIV:63879-64355 8.13e-01 100 chrV:145475-145951 5.86e-01 100 chrXIII:731958-732476 1.23e-03 36_[-3(2.29e-07)]_47 chrVII:401365-401831 2.46e-01 100 chrV:77516-77884 7.51e-01 100 chrXV:903948-904638 3.19e-01 100 chrVII:876148-876698 4.28e-14 20_[+1(7.06e-09)]_5_[+2(1.14e-12)]_\ 16 chrIV:322989-323383 9.55e-01 100 chrXVI:338702-339121 1.65e-02 100 chrV:59318-59794 4.82e-01 100 chrII:60638-61306 2.50e-01 100 chrV:85071-85518 1.02e-03 24_[-3(1.11e-05)]_12_[-3(3.99e-07)]_\ 30 chrIV:1354608-1354857 9.67e-01 100 chrVIII:358297-358835 3.24e-05 23_[-1(1.62e-08)]_47 chrXII:369164-370318 5.78e-01 100 chrVIII:109657-110133 8.90e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************