Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.049583
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.063147
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.09266
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.030026
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.084027
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/background
Finished invoke:
  name: bg  status: 0  time: 0.016011
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 964.694742
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 95.558149
Invoking:
  centrimo -seqlen 340 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.233666
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.552359
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/background -primary SSCBYWAMCCACTVVGCCAMV /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.471792
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/background -primary SGGRRTCGAACCSVKGAYCTYMNGRTTAN /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.412813
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/background -primary DDDDWDWRRTGTAYGGRTGTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.349933
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/background -primary TAAGGCR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.241506
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.239394
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/background -primary TTTCTTB /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.26429
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/background -primary GCGCTHCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.243881
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/background -primary CTWGACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.253634
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/background -primary ATAGTKTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.254371
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/background -primary TCTCCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.236285
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/background -primary RCGGGGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.213081
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/background -primary TAKCTCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.219829
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/background -primary CKTTGGGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.241026
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/background -primary ATATATR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.227224
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/background --motif SSCBYWAMCCACTVVGCCAMV /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.232157
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/background --motif SGGRRTCGAACCSVKGAYCTYMNGRTTAN /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.257964
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/background --motif DDDDWDWRRTGTAYGGRTGTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.244744
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/background --motif TAAGGCR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.167903
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.164721
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/background --motif TTTCTTB /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.15589
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/background --motif GCGCTHCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.143166
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/background --motif CTWGACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.137829
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/background --motif ATAGTKTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.135294
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/background --motif TCTCCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.136462
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/background --motif RCGGGGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.140166
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/background --motif TAKCTCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.122707
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/background --motif CKTTGGGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.130534
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/background --motif ATATATR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/BY4741--PDR1.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.116273
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--PDR1/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.195871
Done