******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--NOT3/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIV:1359233-1359783 1.0000 100 chrXV:900786-900953 1.0000 100 chrX:52663-52763 1.0000 100 chrVII:794184-794646 1.0000 100 chrIV:340418-340611 1.0000 100 chrXV:216241-216659 1.0000 100 chrVI:101152-101666 1.0000 100 chrXV:620966-621366 1.0000 100 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100 chrXVI:185003-185403 1.0000 100 chrXIII:191689-192089 1.0000 100 chrXIV:721897-722297 1.0000 100 chrXVI:942228-942385 1.0000 100 chrXI:791-998 1.0000 100 chrXV:1073538-1073938 1.0000 100 chrVI:144207-144607 1.0000 100 chrIX:297513-297913 1.0000 100 chrXII:899378-899478 1.0000 100 chrXVI:933457-933599 1.0000 100 chrX:267385-267485 1.0000 100 chrV:430998-431654 1.0000 100 chrIV:1180870-1181270 1.0000 100 chrII:414919-415019 1.0000 100 chrXII:195318-195453 1.0000 100 chrXVI:880120-880548 1.0000 100 chrVII:541567-542167 1.0000 100 chrXIV:758834-759234 1.0000 100 chrVIII:505840-506195 1.0000 100 chrXIII:131656-132101 1.0000 100 chrXII:673729-674218 1.0000 100 chrVII:412151-412604 1.0000 100 chrVII:146143-146543 1.0000 100 chrXVI:622422-622833 1.0000 100 chrVII:171006-171106 1.0000 100 chrXII:712986-713557 1.0000 100 chrXI:109727-109921 1.0000 100 chrIII:131821-132221 1.0000 100 chrII:514299-514699 1.0000 100 chrVII:422887-423323 1.0000 100 chrXV:468999-469399 1.0000 100 chrXI:140820-141350 1.0000 100 chrVI:134050-134450 1.0000 100 chrIV:568653-569200 1.0000 100 chrVII:882495-882869 1.0000 100 chrXVI:744098-744548 1.0000 100 chrX:213621-213721 1.0000 100 chrXII:92314-92803 1.0000 100 chrXIV:725902-726405 1.0000 100 chrXIII:362887-363398 1.0000 100 chrXIII:808066-808538 1.0000 100 chrXV:110846-111253 1.0000 100 chrXIII:57643-58043 1.0000 100 chrXV:150043-150443 1.0000 100 chrIII:163455-163860 1.0000 100 chrIII:300497-300897 1.0000 100 chrVIII:553393-553793 1.0000 100 chrVI:137264-137745 1.0000 100 chrXIII:194764-195164 1.0000 100 chrXVI:516538-516938 1.0000 100 chrXVI:188648-188902 1.0000 100 chrII:234911-235311 1.0000 100 chrXIV:631716-632177 1.0000 100 chrXII:796912-797371 1.0000 100 chrXVI:935688-936088 1.0000 100 chrXV:710897-711297 1.0000 100 chrXII:734652-735035 1.0000 100 chrV:311916-312353 1.0000 100 chrI:8357-8757 1.0000 100 chrXII:1063975-1064375 1.0000 100 chrVIII:307956-308356 1.0000 100 chrIV:645061-645425 1.0000 100 chrI:29-198 1.0000 100 chrX:675905-676005 1.0000 100 chrV:490658-490880 1.0000 100 chrVII:498060-498460 1.0000 100 chrIV:323221-323621 1.0000 100 chrXII:967953-968353 1.0000 100 chrIV:579663-579879 1.0000 100 chrII:417661-418061 1.0000 100 chrIV:899281-899681 1.0000 100 chrXII:791860-792018 1.0000 100 chrV:484859-485259 1.0000 100 chrXVI:520191-520515 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--NOT3/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--NOT3/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--NOT3/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 593 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 59300 N= 593 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.324 C 0.176 G 0.176 T 0.324 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--NOT3/background): A 0.328 C 0.172 G 0.172 T 0.328 ******************************************************************************** ******************************************************************************** MOTIF GSBYBBKTGGCSYAGTGGKWW MEME-1 width = 21 sites = 116 llr = 1724 E-value = 1.2e-302 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSBYBBKTGGCSYAGTGGKWW MEME-1 Description -------------------------------------------------------------------------------- Simplified A :111212:2:::1a2::::36 pos.-specific C 143534::::753:::1:11: probability G 9431325:8a:31:8:6a4:1 matrix T :133233a::324::93:563 bits 2.5 * * 2.3 * * 2.0 * * 1.8 * * * * Relative 1.5 * *** ** * Entropy 1.3 * **** *** * (21.4 bits) 1.0 * **** *** * 0.8 ** ***** ****** 0.5 ** * ****** ****** 0.3 ********************* 0.0 --------------------- Multilevel GGTCCCGTGGCCTAGTGGTTA consensus CCTGTT A TGC T GAT sequence G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYBBKTGGCSYAGTGGKWW MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrIV:410190-410540 + 64 8.30e-11 TACAAATATT GGGCGTGTGGCGTAGTCGGTA GCGCGCTCCC chrVII:774109-774556 + 67 8.30e-11 TCAATTAATT GGGCGTGTGGCGTAGTCGGTA GCGCGCTCCC chrXI:219709-220119 + 31 8.30e-11 ACAGTAAATA GGGCGTGTGGCGTAGTCGGTA GCGCGCTCCC chrXIII:320981-321412 - 53 8.30e-11 AATACAAATC GGGCGTGTGGCGTAGTCGGTA GCGCGCTCCC chrVI:204786-205168 - 49 8.30e-11 ACAAACGTTC GGGCGTGTGGCGTAGTCGGTA GCGCGCTCCC chrXVI:856698-857083 + 62 8.30e-11 AACAAGATTC GGGCGTGTGGCGTAGTCGGTA GCGCGCTCCC chrXII:92314-92803 + 40 4.73e-10 AAGTTAATAA GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrXIV:546909-547318 + 31 4.73e-10 CGAAATAATC GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrXV:464206-464705 + 45 4.73e-10 AAGTTAACAA GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrVIII:388784-389213 - 27 4.73e-10 ACAGATACAT GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrXV:300811-301432 + 26 4.73e-10 AGAAAAGATC GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrXIII:195905-196426 - 35 4.73e-10 AAGTTCACAA GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrVI:101152-101666 + 17 4.73e-10 ACAATAATTC GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrXII:734652-735035 + 9 9.40e-10 CAAAGTTT GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrXVI:880120-880548 - 65 9.40e-10 ACAATATAAT GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrIX:210462-210938 + 15 9.40e-10 TGAAATATCT GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrXII:1051959-1052359 - 15 9.40e-10 TCCTTTTCAT GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrIX:183249-183715 - 61 9.40e-10 ACAAATTCCT GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrIV:667800-668261 - 80 9.40e-10 . GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrIV:1150655-1151168 - 60 1.53e-09 AAGTGTTTCA GTCCCAGTGGCCGAGTGGTTA AGGCGATGCC chrVI:191303-191850 - 67 1.53e-09 AAGAGATTCT GTCCCAGTGGCCGAGTGGTTA AGGCGATGCC chrXII:214704-215180 - 43 1.53e-09 ACGCGTTTTA GGGCACATGGCGCAGTTGGTA GCGCGCTTCC chrXII:784176-784552 + 40 1.53e-09 TTGTTCAACC GTCCCAGTGGCCGAGTGGTTA AGGCGATGCC chrI:166048-166480 + 53 1.53e-09 GTAATGAGTT GGGCACATGGCGCAGTTGGTA GCGCGCTTCC chrVII:794184-794646 + 52 1.53e-09 CATAGATTGC GGGCACATGGCGCAGTTGGTA GCGCGCTTCC chrXVI:775637-776028 - 34 5.08e-09 TAATTCAAAA GCTCGTATGGCGCAGTGGTAG CGCAGCAGAT chrXVI:435719-436251 - 9 5.08e-09 TACAACAAAA GCTCGTATGGCGCAGTGGTAG CGCAGCAG chrVII:706951-707362 - 53 5.08e-09 AGAAAATCAA GCTCGTATGGCGCAGTGGTAG CGCAGCAGAT chrVII:412151-412604 - 20 6.71e-09 TCAAAAAACT GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrXII:167814-168227 - 35 6.71e-09 ATAGTCATAT GGCAACTTGGCCGAGTGGTTA AGGCGAAAGA chrX:523778-523878 - 78 6.71e-09 AA GGCAACTTGGCCGAGTGGTTA AGGCGAAAGA chrV:469192-469744 + 39 6.71e-09 AGAAATAATT GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrVIII:85186-85590 - 13 6.71e-09 ATAAGAATTT GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrVII:561414-561997 - 68 6.71e-09 TGTATACATT GGCAACTTGGCCGAGTGGTTA AGGCGAAAGA chrVII:823258-823661 + 73 6.71e-09 CAATAAGAGT GGTTTCGTGGTCTAGTCGGTT ATGGCAT chrIV:1305439-1305873 + 24 6.71e-09 TACAAATTAA GGCAACTTGGCCGAGTGGTTA AGGCGAAAGA chrXI:308050-308374 - 35 6.71e-09 ACAATTAAGT GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrXII:687659-688201 - 32 6.71e-09 ATAAATAATA GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrII:226833-227336 + 41 6.71e-09 TGTAAAACGA GGCAACTTGGCCGAGTGGTTA AGGCGAAAGA chrV:438491-438916 + 47 6.71e-09 CAACAAATTA GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrXVI:689306-689803 + 61 7.69e-09 GATTATTTTG GGCACTATGGCCGAGTGGTTA AGGCGACAGA chrIV:568653-569200 + 6 8.80e-09 TAGTA GCTCGCGTGGCGTAATGGCAA CGCGTCTGAC chrXIII:131656-132101 - 48 8.80e-09 AAGAAATTTA GCTCGCGTGGCGTAATGGCAA CGCGTCTGAC chrXIII:747735-748211 - 20 8.80e-09 CATATGACTA GCTCGCGTGGCGTAATGGCAA CGCGTCTGAC chrV:138433-138966 + 17 8.80e-09 AATAAATAAT GCTCGCGTGGCGTAATGGCAA CGCGTCTGAC chrVII:405292-405693 + 28 8.80e-09 ACAAACAGTA GCTCGCGTGGCGTAATGGCAA CGCGTCTGAC chrVII:828546-828994 - 54 8.80e-09 ACAAACAGTA GCTCGCGTGGCGTAATGGCAA CGCGTCTGAC chrXV:110846-111253 - 14 1.00e-08 CAATTAACCC GGGCGGTTAGTGTAGTGGTTA TCATCCCACC chrVII:779351-779841 + 70 1.00e-08 AGTTAACCCC GGGCGGTTAGTGTAGTGGTTA TCATCCCACC chrXIV:96070-96482 - 66 1.00e-08 TCCAACACAT GGGCGGTTAGTGTAGTGGTTA TCATCCCACC chrXII:592378-592883 - 19 1.15e-08 AACATACAAT GGGAGTTTGGCCGAGTGGTTT AAGGCGTCAG chrX:531631-531731 + 20 2.74e-08 CAATTAGTGA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrVII:845422-845864 + 56 2.74e-08 TAAATAACAA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrIV:992607-992999 + 79 2.74e-08 ACAATTGTGA GCGCAAGTGGTTTAGTGGTAA A chrVIII:116010-116388 - 10 2.74e-08 CACTATTAGA GCTTCTATGGCCAAGTTGGTA AGGCGCCAC chrX:58976-59076 - 36 2.74e-08 TAAAATAGAA GCTTCTATGGCCAAGTTGGTA AGGCGCCACA chrXIII:183725-184136 - 68 2.74e-08 AATAAAGATC GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrII:266160-266665 + 16 2.74e-08 ATCAAAAACT GCTTCTATGGCCAAGTTGGTA AGGCGCCACA chrIII:142581-142987 - 17 2.74e-08 AAGATTACTA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrX:396551-396651 - 36 2.74e-08 TCAAAAGTAA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrIV:434017-434600 - 58 2.74e-08 CAAATCAGAA GCTTCTATGGCCAAGTTGGTA AGGCGCCACA chrVII:930757-931288 - 31 2.74e-08 TAATCAGTAA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrXV:113545-114026 + 67 2.74e-08 CAGAGATTTA GCTTCTATGGCCAAGTTGGTA AGGCGCCACA chrXIV:560452-561018 - 60 2.74e-08 GTAATAACGG GCTTCTATGGCCAAGTTGGTA AGGCGCCACA chrVI:162014-162424 + 59 2.74e-08 AAGAAAACAA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrIV:645061-645425 - 11 3.08e-08 CAGTTGTTAC GGTCCTATAGTGTAGTGGTTA TCACTTTCGG chrXIII:808066-808538 - 45 3.08e-08 AGAAGAAAAA GGTCCTATAGTGTAGTGGTTA TCACTTTCGG chrXII:448535-448964 - 2 3.08e-08 AAGAAGTTCC GGTCCTATAGTGTAGTGGTTA T chrXVI:744098-744548 + 11 5.46e-08 CAGTGTAAAA GCCTCCTTAGCTTAGTGGTAG AGCGTTGCAC chrVIII:466737-467224 + 60 5.46e-08 TGTATTTTTA GCCTCCTTAGCTTAGTGGTAG AGCGTTGCAC chrXIV:631716-632177 - 1 6.80e-08 AACTTCTACC GGGCGTGTGGTCTAGAGGTAT chrVII:185540-185951 - 71 6.80e-08 AACGAAATA GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrV:135182-135733 - 70 6.80e-08 CAAGAAAAAA GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrXI:202812-203210 + 38 6.80e-08 ACGTTTAAAA GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrIII:123457-123791 - 54 6.80e-08 TTTCAAAGGA GGGCGTGTGGTCTAGAGGTAT GATTCTCGCT chrIV:1201474-1201992 + 67 6.80e-08 CAAATAAATA GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrX:538312-538412 + 70 6.80e-08 AACCAAGTTG GTTCCGTTGGCGTAATGGTAA CGCGTCTCCC chrVII:730934-731395 + 23 1.15e-07 TAGTCAAAAA GACTCCATGGCCAAGTTGGTT AAGGCGTGCG chrXIV:102540-102980 + 6 1.15e-07 TATAA GACTCCATGGCCAAGTTGGTT AAGGCGTGCG chrXVI:810434-810896 + 61 1.15e-07 CATTATTTGC GACTCCATGGCCAAGTTGGTT AAGGCGTGCG chrIII:127550-127873 + 55 1.15e-07 AAGATAAAAT GACTCCATGGCCAAGTTGGTT AAGGCGTGCG chrIV:488575-489066 - 80 1.72e-07 . GGTCCAATGGTCCAGTGGTTC AAGACGTCGC chrIV:519546-519967 + 37 2.52e-07 GTGATTTTAC GGAGGGTTGGCCGAGTGGTCT AAGGCGGCAG chrII:9355-9800 + 56 2.52e-07 GAAAATTCGT GGAGGGTTGGCCGAGTGGTCT AAGGCGGCAG chrVII:422887-423323 + 37 3.99e-07 ACAGATAAGT GGTTGTTTGGCCGAGCGGTCT AAGGCGCCTG chrVII:205279-205723 + 70 3.99e-07 ACAAATAAGT GGTTGTTTGGCCGAGCGGTCT AAGGCGCCTG chrV:430998-431654 - 70 4.76e-07 ATTTTGTAGT GCCCTCTTGGGCTAGCGGTAA AGGTGCGCAT chrX:517666-517766 - 45 7.92e-07 ATAAAAGTTA AGCGCCGTGGCGCAGTGGAAG CGCGCAGGGC chrXVI:338751-339096 - 26 7.92e-07 ATGATTTAGC AGCGCCGTGGCGCAGTGGAAG CGCGCAGGGC chrXV:709971-710405 + 63 7.92e-07 AAGAATTAGC AGCGCCGTGGCGCAGTGGAAG CGCGCAGGGC chrX:422673-422773 + 39 8.59e-07 TCCTTTGTAT GCTTCAGTAGCTCAGTAGGAA GAGCGTCAGT chrX:390894-390994 - 49 8.59e-07 AAGAAATAGT GCTTCAGTAGCTCAGTAGGAA GAGCGTCAGT chrXIII:572711-573216 - 22 8.59e-07 ATAACAGACA GCTTCAGTAGCTCAGTAGGAA GAGCGTCAGT chrX:233706-233806 + 32 1.01e-06 TATATTCTTG TTCCTCGTGGCCCAATGGTCA CGGCGTCTGG chrV:492145-492643 - 60 1.01e-06 GAACATCCTA TTCCTCGTGGCCCAATGGTCA CGGCGTCTGG chrXI:313305-313681 - 9 1.28e-06 ACAGTTGTTT GCCATCTTAGTATAGTGGTTA GTACACAT chrVII:319600-319999 + 32 1.28e-06 AAAGAAATTA GCCATCTTAGTATAGTGGTTA GTACACATCG chrV:434435-434810 - 20 1.28e-06 TTGAAAAGTC GCCATCTTAGTATAGTGGTTA GTACACATCG chrV:207125-207591 + 49 1.28e-06 ATATAAGTTC GCCATCTTAGTATAGTGGTTA GTACACATCG chrVI:210442-210892 - 70 1.49e-06 ACAAAAACGA CTCTCGGTAGCCAAGTTGGTT TAAGGCGCAA chrX:542785-542885 - 55 1.49e-06 CAATTAAATA CTCTCGGTAGCCAAGTTGGTT TAAGGCGCAA chrXV:287987-288354 + 72 1.49e-06 AAAATAGCTT CTCTCGGTAGCCAAGTTGGTT TAAGGCGC chrXIII:837682-838188 + 43 1.49e-06 AGTTAATTGA CTCTCGGTAGCCAAGTTGGTT TAAGGCGCAA chrIV:946123-946579 + 11 1.49e-06 AAGAAATCGA CTCTCGGTAGCCAAGTTGGTT TAAGGCGCAA chrXIII:168571-169073 + 23 1.49e-06 AAAATAGTCA CTCTCGGTAGCCAAGTTGGTT TAAGGCGCAA chrXII:818438-818779 + 51 1.73e-06 AATTTATTAT GCTCCTCTAGTGCAATGGTTA GCATGCATTC chrXVI:622422-622833 - 34 2.16e-06 ATTCTGATAT GCGGATTTAGCTCAGTTGGGA GAGCGCCAGA chrXVI:559991-560543 - 52 2.16e-06 TAGAAATTGA GCGGATTTAGCTCAGTTGGGA GAGCGCCAGA chrVIII:358314-358813 - 36 2.16e-06 CAAATAGTAA GCGGATTTAGCTCAGTTGGGA GAGCGCCAGA chrVII:115285-115728 + 32 2.67e-06 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTA GAGCGTTCGG chrXV:438374-438915 + 49 2.67e-06 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTA GAGCGTTCGG chrXI:302636-303201 + 50 2.87e-06 ATTCCAAGAT GAAGCGGTGGCTCAATGGTAG AGCTTTCGAC chrXVI:56074-56513 - 11 2.87e-06 AACAATAGTT GAAGCGGTGGCTCAATGGTAG AGCTTTCGAC chrVII:878630-879014 - 23 2.87e-06 ATTTCAAGAT GAAGCGGTGGCTCAATGGTAG AGCTTTCGAC chrVII:287226-287692 - 26 2.87e-06 ATTTCAAGAT GAAGCGGTGGCTCAATGGTAG AGCTTTCGAC chrIV:1075316-1075712 - 60 6.30e-06 CCGTAATATT GTTCCAATAGTGTAGCGGCTA TCACGTTGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYBBKTGGCSYAGTGGKWW MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:410190-410540 8.3e-11 63_[+1]_16 chrVII:774109-774556 8.3e-11 66_[+1]_13 chrXI:219709-220119 8.3e-11 30_[+1]_49 chrXIII:320981-321412 8.3e-11 52_[-1]_27 chrVI:204786-205168 8.3e-11 48_[-1]_31 chrXVI:856698-857083 8.3e-11 61_[+1]_18 chrXII:92314-92803 4.7e-10 39_[+1]_40 chrXIV:546909-547318 4.7e-10 30_[+1]_49 chrXV:464206-464705 4.7e-10 44_[+1]_35 chrVIII:388784-389213 4.7e-10 26_[-1]_53 chrXV:300811-301432 4.7e-10 25_[+1]_54 chrXIII:195905-196426 4.7e-10 34_[-1]_45 chrVI:101152-101666 4.7e-10 16_[+1]_63 chrXII:734652-735035 9.4e-10 8_[+1]_71 chrXVI:880120-880548 9.4e-10 64_[-1]_15 chrIX:210462-210938 9.4e-10 14_[+1]_65 chrXII:1051959-1052359 9.4e-10 14_[-1]_65 chrIX:183249-183715 9.4e-10 60_[-1]_19 chrIV:667800-668261 9.4e-10 79_[-1] chrIV:1150655-1151168 1.5e-09 59_[-1]_20 chrVI:191303-191850 1.5e-09 66_[-1]_13 chrXII:214704-215180 1.5e-09 42_[-1]_37 chrXII:784176-784552 1.5e-09 39_[+1]_40 chrI:166048-166480 1.5e-09 52_[+1]_27 chrVII:794184-794646 1.5e-09 51_[+1]_28 chrXVI:775637-776028 5.1e-09 33_[-1]_46 chrXVI:435719-436251 5.1e-09 8_[-1]_71 chrVII:706951-707362 5.1e-09 52_[-1]_27 chrVII:412151-412604 6.7e-09 19_[-1]_60 chrXII:167814-168227 6.7e-09 34_[-1]_45 chrX:523778-523878 6.7e-09 77_[-1]_2 chrV:469192-469744 6.7e-09 38_[+1]_41 chrVIII:85186-85590 6.7e-09 12_[-1]_67 chrVII:561414-561997 6.7e-09 67_[-1]_12 chrVII:823258-823661 6.7e-09 72_[+1]_7 chrIV:1305439-1305873 6.7e-09 23_[+1]_56 chrXI:308050-308374 6.7e-09 34_[-1]_45 chrXII:687659-688201 6.7e-09 31_[-1]_48 chrII:226833-227336 6.7e-09 40_[+1]_39 chrV:438491-438916 6.7e-09 46_[+1]_33 chrXVI:689306-689803 7.7e-09 60_[+1]_19 chrIV:568653-569200 8.8e-09 5_[+1]_74 chrXIII:131656-132101 8.8e-09 47_[-1]_32 chrXIII:747735-748211 8.8e-09 19_[-1]_60 chrV:138433-138966 8.8e-09 16_[+1]_63 chrVII:405292-405693 8.8e-09 27_[+1]_52 chrVII:828546-828994 8.8e-09 53_[-1]_26 chrXV:110846-111253 1e-08 13_[-1]_66 chrVII:779351-779841 1e-08 69_[+1]_10 chrXIV:96070-96482 1e-08 65_[-1]_14 chrXII:592378-592883 1.1e-08 18_[-1]_61 chrX:531631-531731 2.7e-08 19_[+1]_60 chrVII:845422-845864 2.7e-08 55_[+1]_24 chrIV:992607-992999 2.7e-08 78_[+1]_1 chrVIII:116010-116388 2.7e-08 9_[-1]_70 chrX:58976-59076 2.7e-08 35_[-1]_44 chrXIII:183725-184136 2.7e-08 67_[-1]_12 chrII:266160-266665 2.7e-08 15_[+1]_64 chrIII:142581-142987 2.7e-08 16_[-1]_63 chrX:396551-396651 2.7e-08 35_[-1]_44 chrIV:434017-434600 2.7e-08 57_[-1]_22 chrVII:930757-931288 2.7e-08 30_[-1]_49 chrXV:113545-114026 2.7e-08 66_[+1]_13 chrXIV:560452-561018 2.7e-08 59_[-1]_20 chrVI:162014-162424 2.7e-08 58_[+1]_21 chrIV:645061-645425 3.1e-08 10_[-1]_69 chrXIII:808066-808538 3.1e-08 44_[-1]_35 chrXII:448535-448964 3.1e-08 1_[-1]_78 chrXVI:744098-744548 5.5e-08 10_[+1]_69 chrVIII:466737-467224 5.5e-08 59_[+1]_20 chrXIV:631716-632177 6.8e-08 [-1]_79 chrVII:185540-185951 6.8e-08 70_[-1]_9 chrV:135182-135733 6.8e-08 69_[-1]_10 chrXI:202812-203210 6.8e-08 37_[+1]_42 chrIII:123457-123791 6.8e-08 53_[-1]_26 chrIV:1201474-1201992 6.8e-08 66_[+1]_13 chrX:538312-538412 6.8e-08 69_[+1]_10 chrVII:730934-731395 1.2e-07 22_[+1]_57 chrXIV:102540-102980 1.2e-07 5_[+1]_74 chrXVI:810434-810896 1.2e-07 60_[+1]_19 chrIII:127550-127873 1.2e-07 54_[+1]_25 chrIV:488575-489066 1.7e-07 79_[-1] chrIV:519546-519967 2.5e-07 36_[+1]_43 chrII:9355-9800 2.5e-07 55_[+1]_24 chrVII:422887-423323 4e-07 36_[+1]_43 chrVII:205279-205723 4e-07 69_[+1]_10 chrV:430998-431654 4.8e-07 69_[-1]_10 chrX:517666-517766 7.9e-07 44_[-1]_35 chrXVI:338751-339096 7.9e-07 25_[-1]_54 chrXV:709971-710405 7.9e-07 62_[+1]_17 chrX:422673-422773 8.6e-07 38_[+1]_41 chrX:390894-390994 8.6e-07 48_[-1]_31 chrXIII:572711-573216 8.6e-07 21_[-1]_58 chrX:233706-233806 1e-06 31_[+1]_48 chrV:492145-492643 1e-06 59_[-1]_20 chrXI:313305-313681 1.3e-06 8_[-1]_71 chrVII:319600-319999 1.3e-06 31_[+1]_48 chrV:434435-434810 1.3e-06 19_[-1]_60 chrV:207125-207591 1.3e-06 48_[+1]_31 chrVI:210442-210892 1.5e-06 69_[-1]_10 chrX:542785-542885 1.5e-06 54_[-1]_25 chrXV:287987-288354 1.5e-06 71_[+1]_8 chrXIII:837682-838188 1.5e-06 42_[+1]_37 chrIV:946123-946579 1.5e-06 10_[+1]_69 chrXIII:168571-169073 1.5e-06 22_[+1]_57 chrXII:818438-818779 1.7e-06 50_[+1]_29 chrXVI:622422-622833 2.2e-06 33_[-1]_46 chrXVI:559991-560543 2.2e-06 51_[-1]_28 chrVIII:358314-358813 2.2e-06 35_[-1]_44 chrVII:115285-115728 2.7e-06 31_[+1]_48 chrXV:438374-438915 2.7e-06 48_[+1]_31 chrXI:302636-303201 2.9e-06 49_[+1]_30 chrXVI:56074-56513 2.9e-06 10_[-1]_69 chrVII:878630-879014 2.9e-06 22_[-1]_57 chrVII:287226-287692 2.9e-06 25_[-1]_54 chrIV:1075316-1075712 6.3e-06 59_[-1]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYBBKTGGCSYAGTGGKWW MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSBYBBKTGGCSYAGTGGKWW width=21 seqs=116 chrIV:410190-410540 ( 64) GGGCGTGTGGCGTAGTCGGTA 1 chrVII:774109-774556 ( 67) GGGCGTGTGGCGTAGTCGGTA 1 chrXI:219709-220119 ( 31) GGGCGTGTGGCGTAGTCGGTA 1 chrXIII:320981-321412 ( 53) GGGCGTGTGGCGTAGTCGGTA 1 chrVI:204786-205168 ( 49) GGGCGTGTGGCGTAGTCGGTA 1 chrXVI:856698-857083 ( 62) GGGCGTGTGGCGTAGTCGGTA 1 chrXII:92314-92803 ( 40) GGGCGTGTGGTCTAGTGGTAT 1 chrXIV:546909-547318 ( 31) GGGCGTGTGGTCTAGTGGTAT 1 chrXV:464206-464705 ( 45) GGGCGTGTGGTCTAGTGGTAT 1 chrVIII:388784-389213 ( 27) GGGCGTGTGGTCTAGTGGTAT 1 chrXV:300811-301432 ( 26) GGGCGTGTGGTCTAGTGGTAT 1 chrXIII:195905-196426 ( 35) GGGCGTGTGGTCTAGTGGTAT 1 chrVI:101152-101666 ( 17) GGGCGTGTGGTCTAGTGGTAT 1 chrXII:734652-735035 ( 9) GGTCTCTTGGCCCAGTTGGTT 1 chrXVI:880120-880548 ( 65) GGTCTCTTGGCCCAGTTGGTT 1 chrIX:210462-210938 ( 15) GGTCTCTTGGCCCAGTTGGTT 1 chrXII:1051959-1052359 ( 15) GGTCTCTTGGCCCAGTTGGTT 1 chrIX:183249-183715 ( 61) GGTCTCTTGGCCCAGTTGGTT 1 chrIV:667800-668261 ( 80) GGTCTCTTGGCCCAGTTGGTT 1 chrIV:1150655-1151168 ( 60) GTCCCAGTGGCCGAGTGGTTA 1 chrVI:191303-191850 ( 67) GTCCCAGTGGCCGAGTGGTTA 1 chrXII:214704-215180 ( 43) GGGCACATGGCGCAGTTGGTA 1 chrXII:784176-784552 ( 40) GTCCCAGTGGCCGAGTGGTTA 1 chrI:166048-166480 ( 53) GGGCACATGGCGCAGTTGGTA 1 chrVII:794184-794646 ( 52) GGGCACATGGCGCAGTTGGTA 1 chrXVI:775637-776028 ( 34) GCTCGTATGGCGCAGTGGTAG 1 chrXVI:435719-436251 ( 9) GCTCGTATGGCGCAGTGGTAG 1 chrVII:706951-707362 ( 53) GCTCGTATGGCGCAGTGGTAG 1 chrVII:412151-412604 ( 20) GGTTTCGTGGTCTAGTCGGTT 1 chrXII:167814-168227 ( 35) GGCAACTTGGCCGAGTGGTTA 1 chrX:523778-523878 ( 78) GGCAACTTGGCCGAGTGGTTA 1 chrV:469192-469744 ( 39) GGTTTCGTGGTCTAGTCGGTT 1 chrVIII:85186-85590 ( 13) GGTTTCGTGGTCTAGTCGGTT 1 chrVII:561414-561997 ( 68) GGCAACTTGGCCGAGTGGTTA 1 chrVII:823258-823661 ( 73) GGTTTCGTGGTCTAGTCGGTT 1 chrIV:1305439-1305873 ( 24) GGCAACTTGGCCGAGTGGTTA 1 chrXI:308050-308374 ( 35) GGTTTCGTGGTCTAGTCGGTT 1 chrXII:687659-688201 ( 32) GGTTTCGTGGTCTAGTCGGTT 1 chrII:226833-227336 ( 41) GGCAACTTGGCCGAGTGGTTA 1 chrV:438491-438916 ( 47) GGTTTCGTGGTCTAGTCGGTT 1 chrXVI:689306-689803 ( 61) GGCACTATGGCCGAGTGGTTA 1 chrIV:568653-569200 ( 6) GCTCGCGTGGCGTAATGGCAA 1 chrXIII:131656-132101 ( 48) GCTCGCGTGGCGTAATGGCAA 1 chrXIII:747735-748211 ( 20) GCTCGCGTGGCGTAATGGCAA 1 chrV:138433-138966 ( 17) GCTCGCGTGGCGTAATGGCAA 1 chrVII:405292-405693 ( 28) GCTCGCGTGGCGTAATGGCAA 1 chrVII:828546-828994 ( 54) GCTCGCGTGGCGTAATGGCAA 1 chrXV:110846-111253 ( 14) GGGCGGTTAGTGTAGTGGTTA 1 chrVII:779351-779841 ( 70) GGGCGGTTAGTGTAGTGGTTA 1 chrXIV:96070-96482 ( 66) GGGCGGTTAGTGTAGTGGTTA 1 chrXII:592378-592883 ( 19) GGGAGTTTGGCCGAGTGGTTT 1 chrX:531631-531731 ( 20) GCGCAAGTGGTTTAGTGGTAA 1 chrVII:845422-845864 ( 56) GCGCAAGTGGTTTAGTGGTAA 1 chrIV:992607-992999 ( 79) GCGCAAGTGGTTTAGTGGTAA 1 chrVIII:116010-116388 ( 10) GCTTCTATGGCCAAGTTGGTA 1 chrX:58976-59076 ( 36) GCTTCTATGGCCAAGTTGGTA 1 chrXIII:183725-184136 ( 68) GCGCAAGTGGTTTAGTGGTAA 1 chrII:266160-266665 ( 16) GCTTCTATGGCCAAGTTGGTA 1 chrIII:142581-142987 ( 17) GCGCAAGTGGTTTAGTGGTAA 1 chrX:396551-396651 ( 36) GCGCAAGTGGTTTAGTGGTAA 1 chrIV:434017-434600 ( 58) GCTTCTATGGCCAAGTTGGTA 1 chrVII:930757-931288 ( 31) GCGCAAGTGGTTTAGTGGTAA 1 chrXV:113545-114026 ( 67) GCTTCTATGGCCAAGTTGGTA 1 chrXIV:560452-561018 ( 60) GCTTCTATGGCCAAGTTGGTA 1 chrVI:162014-162424 ( 59) GCGCAAGTGGTTTAGTGGTAA 1 chrIV:645061-645425 ( 11) GGTCCTATAGTGTAGTGGTTA 1 chrXIII:808066-808538 ( 45) GGTCCTATAGTGTAGTGGTTA 1 chrXII:448535-448964 ( 2) GGTCCTATAGTGTAGTGGTTA 1 chrXVI:744098-744548 ( 11) GCCTCCTTAGCTTAGTGGTAG 1 chrVIII:466737-467224 ( 60) GCCTCCTTAGCTTAGTGGTAG 1 chrXIV:631716-632177 ( 1) GGGCGTGTGGTCTAGAGGTAT 1 chrVII:185540-185951 ( 71) GCCTTGTTGGCGCAATCGGTA 1 chrV:135182-135733 ( 70) GCCTTGTTGGCGCAATCGGTA 1 chrXI:202812-203210 ( 38) GCCTTGTTGGCGCAATCGGTA 1 chrIII:123457-123791 ( 54) GGGCGTGTGGTCTAGAGGTAT 1 chrIV:1201474-1201992 ( 67) GCCTTGTTGGCGCAATCGGTA 1 chrX:538312-538412 ( 70) GTTCCGTTGGCGTAATGGTAA 1 chrVII:730934-731395 ( 23) GACTCCATGGCCAAGTTGGTT 1 chrXIV:102540-102980 ( 6) GACTCCATGGCCAAGTTGGTT 1 chrXVI:810434-810896 ( 61) GACTCCATGGCCAAGTTGGTT 1 chrIII:127550-127873 ( 55) GACTCCATGGCCAAGTTGGTT 1 chrIV:488575-489066 ( 80) GGTCCAATGGTCCAGTGGTTC 1 chrIV:519546-519967 ( 37) GGAGGGTTGGCCGAGTGGTCT 1 chrII:9355-9800 ( 56) GGAGGGTTGGCCGAGTGGTCT 1 chrVII:422887-423323 ( 37) GGTTGTTTGGCCGAGCGGTCT 1 chrVII:205279-205723 ( 70) GGTTGTTTGGCCGAGCGGTCT 1 chrV:430998-431654 ( 70) GCCCTCTTGGGCTAGCGGTAA 1 chrX:517666-517766 ( 45) AGCGCCGTGGCGCAGTGGAAG 1 chrXVI:338751-339096 ( 26) AGCGCCGTGGCGCAGTGGAAG 1 chrXV:709971-710405 ( 63) AGCGCCGTGGCGCAGTGGAAG 1 chrX:422673-422773 ( 39) GCTTCAGTAGCTCAGTAGGAA 1 chrX:390894-390994 ( 49) GCTTCAGTAGCTCAGTAGGAA 1 chrXIII:572711-573216 ( 22) GCTTCAGTAGCTCAGTAGGAA 1 chrX:233706-233806 ( 32) TTCCTCGTGGCCCAATGGTCA 1 chrV:492145-492643 ( 60) TTCCTCGTGGCCCAATGGTCA 1 chrXI:313305-313681 ( 9) GCCATCTTAGTATAGTGGTTA 1 chrVII:319600-319999 ( 32) GCCATCTTAGTATAGTGGTTA 1 chrV:434435-434810 ( 20) GCCATCTTAGTATAGTGGTTA 1 chrV:207125-207591 ( 49) GCCATCTTAGTATAGTGGTTA 1 chrVI:210442-210892 ( 70) CTCTCGGTAGCCAAGTTGGTT 1 chrX:542785-542885 ( 55) CTCTCGGTAGCCAAGTTGGTT 1 chrXV:287987-288354 ( 72) CTCTCGGTAGCCAAGTTGGTT 1 chrXIII:837682-838188 ( 43) CTCTCGGTAGCCAAGTTGGTT 1 chrIV:946123-946579 ( 11) CTCTCGGTAGCCAAGTTGGTT 1 chrXIII:168571-169073 ( 23) CTCTCGGTAGCCAAGTTGGTT 1 chrXII:818438-818779 ( 51) GCTCCTCTAGTGCAATGGTTA 1 chrXVI:622422-622833 ( 34) GCGGATTTAGCTCAGTTGGGA 1 chrXVI:559991-560543 ( 52) GCGGATTTAGCTCAGTTGGGA 1 chrVIII:358314-358813 ( 36) GCGGATTTAGCTCAGTTGGGA 1 chrVII:115285-115728 ( 32) TCCTTGTTAGCTCAGTTGGTA 1 chrXV:438374-438915 ( 49) TCCTTGTTAGCTCAGTTGGTA 1 chrXI:302636-303201 ( 50) GAAGCGGTGGCTCAATGGTAG 1 chrXVI:56074-56513 ( 11) GAAGCGGTGGCTCAATGGTAG 1 chrVII:878630-879014 ( 23) GAAGCGGTGGCTCAATGGTAG 1 chrVII:287226-287692 ( 26) GAAGCGGTGGCTCAATGGTAG 1 chrIV:1075316-1075712 ( 60) GTTCCAATAGTGTAGCGGCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYBBKTGGCSYAGTGGKWW MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 47440 bayes= 9.31432 E= 1.2e-302 -366 -174 237 -325 -225 111 138 -155 -266 89 72 7 -179 151 -74 -8 -100 96 68 -55 -125 111 14 -12 -79 -432 151 -8 -1350 -1350 -1350 161 -44 -1350 214 -1350 -1350 -1350 254 -1350 -1350 196 -432 -4 -325 149 77 -79 -125 81 -51 42 161 -1350 -1350 -1350 -108 -1350 229 -1350 -425 -232 -1350 153 -366 -23 172 -34 -1350 -1350 254 -1350 -366 -151 132 56 7 -174 -274 82 80 -432 -74 -4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYBBKTGGCSYAGTGGKWW MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 116 E= 1.2e-302 0.025862 0.051724 0.887931 0.034483 0.068966 0.370690 0.448276 0.112069 0.051724 0.318966 0.284483 0.344828 0.094828 0.491379 0.103448 0.310345 0.163793 0.336207 0.275862 0.224138 0.137931 0.370690 0.189655 0.301724 0.189655 0.008621 0.491379 0.310345 0.000000 0.000000 0.000000 1.000000 0.241379 0.000000 0.758621 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.672414 0.008621 0.318966 0.034483 0.482759 0.293103 0.189655 0.137931 0.301724 0.120690 0.439655 1.000000 0.000000 0.000000 0.000000 0.155172 0.000000 0.844828 0.000000 0.017241 0.034483 0.000000 0.948276 0.025862 0.146552 0.568966 0.258621 0.000000 0.000000 1.000000 0.000000 0.025862 0.060345 0.431034 0.482759 0.344828 0.051724 0.025862 0.577586 0.568966 0.008621 0.103448 0.318966 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYBBKTGGCSYAGTGGKWW MEME-1 regular expression -------------------------------------------------------------------------------- G[GC][TCG][CT][CGT][CT][GT]T[GA]G[CT][CG][TC]AGT[GT]G[TG][TA][AT] -------------------------------------------------------------------------------- Time 349.24 secs. ******************************************************************************** ******************************************************************************** MOTIF DMBSGGRRTCGAACCSVKGAYCTYCNSRTT MEME-2 width = 30 sites = 55 llr = 1182 E-value = 1.6e-237 ******************************************************************************** -------------------------------------------------------------------------------- Motif DMBSGGRRTCGAACCSVKGAYCTYCNSRTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 34:12:54:::aa::13137:::122:511 pos.-specific C :4341::1:7:::a8541::4835534111 probability G 41457a53::a:::133471::111264:2 matrix T 313::::2a3::::21:4:2626422::87 bits 2.5 * * 2.3 * * * 2.0 * * * 1.8 * * * Relative 1.5 * ****** * Entropy 1.3 ** ******* * * * (31.0 bits) 1.0 **** ******* * ** * 0.8 ***** ******** ***** * * 0.5 ******* ***************** **** 0.3 ****************************** 0.0 ------------------------------ Multilevel GCGGGGAATCGAACCCCGGATCTCCCGATT consensus AATCA GG T GATATC CTAACG sequence T C G T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMBSGGRRTCGAACCSVKGAYCTYCNSRTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXII:734652-735035 - 46 2.29e-14 AAATGGTCTC TAGCGGGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrXVI:880120-880548 + 19 2.29e-14 AAATGGTCTC TAGCGGGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrIX:210462-210938 - 52 2.29e-14 ATATGGTCTC TAGCGGGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrIX:183249-183715 + 15 2.29e-14 AAGTGGTCTC TAGCGGGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrII:197233-197904 - 13 2.29e-14 AAATGGTCTC TAGCGGGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrIV:667800-668261 + 34 2.29e-14 AAATGGTCTC TAGCGGGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrIV:1016873-1017554 + 51 7.56e-14 AAACTCCGAA GCGGGGAGTCGAACCCCGGTCTCCACGGTG AGAACGTGAT chrIII:123457-123791 + 10 1.96e-13 GTGGGGCGA GCCGGGACTCGAACCCGGGACCTCCCGCAC CCTAAGCGAG chrIV:568653-569200 - 41 3.57e-13 AAGCACTCAC GATGGGGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrXIII:131656-132101 + 4 3.57e-13 CAC GATGGGGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrVII:541567-542167 - 68 3.57e-13 GAT ACGGGGAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrVII:736135-736666 - 25 3.57e-13 CAACACTCAC GATGGGGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrXVI:209952-210509 + 19 3.57e-13 AAACTCCGAT ACGGGGAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrV:138433-138966 - 52 3.57e-13 AAACACTCAC GATGGGGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrII:645001-645386 - 59 3.57e-13 TAACTCCGAT ACGGGGAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrVII:405292-405693 - 63 3.57e-13 GCACTCAC GATGGGGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrVII:828546-828994 + 10 3.57e-13 AGCACTCAC GATGGGGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrX:374258-374358 + 55 3.57e-13 AAGCACTCAC GATGGGGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrVII:185540-185951 + 26 3.61e-12 GATAGCCCTG TAGGGGGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrV:135182-135733 + 25 3.61e-12 GAAAGCCCTG TAGGGGGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrX:531631-531731 - 54 5.24e-12 AACTGCGCAA GCCCGGAATCGAACCGGGGGCCCAACGATG GCAACGTTGG chrXIII:183725-184136 + 25 5.24e-12 ATATGCGCAA GCCCGGAATCGAACCGGGGGCCCAACGATG GCAACGTTGG chrIX:174856-175320 - 29 2.13e-11 AATTGCTTCC AATCGGATTTGAACCGATGATCTCCACATT ACTAGTGTGG chrII:266160-266665 - 52 2.13e-11 AAATGCTTCC AATCGGATTTGAACCGATGATCTCCACATT ACTAGTGTGG chrIV:434017-434600 + 13 2.13e-11 ATATGCTTCC AATCGGATTTGAACCGATGATCTCCACATT ACTAGTGTGG chrXIV:560452-561018 + 15 2.13e-11 TTATGCTTCC AATCGGATTTGAACCGATGATCTCCACATT ACTAGTGTGG chrX:233706-233806 - 68 2.66e-11 CCC GCCAGGACTCGAACCTGGAATCTCCTGGTT CGTAGCCAGA chrXIV:567890-568463 - 55 2.66e-11 AAAGGGGCGA GCTGGGAATTGAACCCAGGGCCTCTCGCAT GCTTTGTCTT chrVI:210442-210892 + 9 4.09e-11 ATCTCCCG GGGGCGAGTCGAACGCCCGATCTCAAGATT TCGTAGTGGT chrIV:946123-946579 - 63 4.09e-11 ATCTCCCG GGGGCGAGTCGAACGCCCGATCTCAAGATT TCGTAGTGAT chrX:354051-354151 - 24 4.09e-11 AAATCTCCCG GGGGCGAGTCGAACGCCCGATCTCAAGATT TCGTAGTGGT chrXI:578801-579234 - 57 1.26e-10 GAACTCCTCA TAGGGGGCTCGAACCCCTGACATTTCGGTA TCCTTGCTTA chrIV:488575-489066 + 34 2.46e-10 TTCTGATCCA ACCGAGGTTCGAACTCGGGATCTTCGCCGT GTAAAGGCGA chrXII:374133-374678 - 36 2.97e-10 AATCTTCCCC GCCAGGACTTGAACCTGGAATCTTCTGGTT CGTAGCCAGA chrV:492145-492643 + 15 2.97e-10 ATCCTTCCCC GCCAGGACTTGAACCTGGAATCTTCTGGTT CGTAGCCAGA chrXI:219709-220119 - 67 3.25e-10 ACGA GTCCGGAATCGAACCGGAGACCTCTCCCAT GCTAAGGGAG chrXIII:320981-321412 + 8 3.25e-10 TGGACGA GTCCGGAATCGAACCGGAGACCTCTCCCAT GCTAAGGGAG chrVI:204786-205168 + 4 3.25e-10 CGA GTCCGGAATCGAACCGGAGACCTCTCCCAT GCTAAGGGAG chrIV:1075316-1075712 + 15 3.56e-10 AAATGTTCCA ACCGAGGATCGAACTCGGGACCTTTGCCGT GTGAAGGCAA chrX:390894-390994 + 4 4.27e-10 CCA GGGGAGGTTCGAACTCTCGACCTTCAGATT ATGAGACTGA chrXIV:96070-96482 + 22 5.10e-10 ATTTGAGCGG TACGAGAATCGAACCCGTGTCCCCACCTTG GAAGGGTGGG chrVI:137264-137745 + 39 7.87e-10 AAACGACCCC AGTGAGGGTTGAACTCACGATCTTGCGATT AACAGTCGCA chrVII:730934-731395 - 60 7.87e-10 AAACGACCCC AGTGAGGGTTGAACTCACGATCTTGCGATT AACAGTCGCA chrXIV:102540-102980 - 43 7.87e-10 AAACGACCCC AGTGAGGGTTGAACTCACGATCTTGCGATT AACAGTCGCA chrXIII:808066-808538 + 1 1.95e-09 . ACCCGGATTCGAACTGGGGTTGTTCGGATC AGAACCGAAA chrIV:1095146-1095645 + 32 1.95e-09 AAATGCGAAC TCTGTGGATCGAACACAGGACCTCCAGATA TCTTGACCAA chrXIII:463329-463834 - 58 3.62e-09 AATCTCCGCG ACGGGGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrXII:793725-794176 - 53 3.62e-09 AATCTCCGCG ACGGGGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrIX:324059-324547 + 57 3.62e-09 AATCTCCGCG ACGGGGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrX:517666-517766 + 1 6.52e-09 . GCTCGGTTTCGATCCGAGGACATCAGGGTT ATGAGCCCTG chrVII:706951-707362 + 9 6.52e-09 AAGCTCGC ACTCAGGATCGAACTAAGGACCAACAGATT TGCAATCTGC chrXVI:744098-744548 - 46 1.49e-08 TTTTGCCACC TGTCAGAATTGAACTAACGACCTTTGCATT ACAAGTGCAA chrXIII:362887-363398 - 7 1.03e-07 AAATGCCATC TCCTAGAATCGAACCAGGGTTTCATCGGCC ACAACG chrVII:319600-319999 - 67 1.03e-07 CATC TCCTAGAATCGAACCAGGGTTTCATCGGCC ACAACGATGT chrXIV:725902-726405 - 28 1.51e-07 ACGGTTGTCC GCGCGAGTTCGAACCTCGCATCCTTCAGTA TTTTTTTTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMBSGGRRTCGAACCSVKGAYCTYCNSRTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:734652-735035 2.3e-14 45_[-2]_25 chrXVI:880120-880548 2.3e-14 18_[+2]_52 chrIX:210462-210938 2.3e-14 51_[-2]_19 chrIX:183249-183715 2.3e-14 14_[+2]_56 chrII:197233-197904 2.3e-14 12_[-2]_58 chrIV:667800-668261 2.3e-14 33_[+2]_37 chrIV:1016873-1017554 7.6e-14 50_[+2]_20 chrIII:123457-123791 2e-13 9_[+2]_61 chrIV:568653-569200 3.6e-13 40_[-2]_30 chrXIII:131656-132101 3.6e-13 3_[+2]_67 chrVII:541567-542167 3.6e-13 67_[-2]_3 chrVII:736135-736666 3.6e-13 24_[-2]_46 chrXVI:209952-210509 3.6e-13 18_[+2]_52 chrV:138433-138966 3.6e-13 51_[-2]_19 chrII:645001-645386 3.6e-13 58_[-2]_12 chrVII:405292-405693 3.6e-13 62_[-2]_8 chrVII:828546-828994 3.6e-13 9_[+2]_61 chrX:374258-374358 3.6e-13 54_[+2]_16 chrVII:185540-185951 3.6e-12 25_[+2]_45 chrV:135182-135733 3.6e-12 24_[+2]_46 chrX:531631-531731 5.2e-12 53_[-2]_17 chrXIII:183725-184136 5.2e-12 24_[+2]_46 chrIX:174856-175320 2.1e-11 28_[-2]_42 chrII:266160-266665 2.1e-11 51_[-2]_19 chrIV:434017-434600 2.1e-11 12_[+2]_58 chrXIV:560452-561018 2.1e-11 14_[+2]_56 chrX:233706-233806 2.7e-11 67_[-2]_3 chrXIV:567890-568463 2.7e-11 54_[-2]_16 chrVI:210442-210892 4.1e-11 8_[+2]_62 chrIV:946123-946579 4.1e-11 62_[-2]_8 chrX:354051-354151 4.1e-11 23_[-2]_47 chrXI:578801-579234 1.3e-10 56_[-2]_14 chrIV:488575-489066 2.5e-10 33_[+2]_37 chrXII:374133-374678 3e-10 35_[-2]_35 chrV:492145-492643 3e-10 14_[+2]_56 chrXI:219709-220119 3.3e-10 66_[-2]_4 chrXIII:320981-321412 3.3e-10 7_[+2]_63 chrVI:204786-205168 3.3e-10 3_[+2]_67 chrIV:1075316-1075712 3.6e-10 14_[+2]_56 chrX:390894-390994 4.3e-10 3_[+2]_67 chrXIV:96070-96482 5.1e-10 21_[+2]_49 chrVI:137264-137745 7.9e-10 38_[+2]_32 chrVII:730934-731395 7.9e-10 59_[-2]_11 chrXIV:102540-102980 7.9e-10 42_[-2]_28 chrXIII:808066-808538 1.9e-09 [+2]_70 chrIV:1095146-1095645 1.9e-09 31_[+2]_39 chrXIII:463329-463834 3.6e-09 57_[-2]_13 chrXII:793725-794176 3.6e-09 52_[-2]_18 chrIX:324059-324547 3.6e-09 56_[+2]_14 chrX:517666-517766 6.5e-09 [+2]_70 chrVII:706951-707362 6.5e-09 8_[+2]_62 chrXVI:744098-744548 1.5e-08 45_[-2]_25 chrXIII:362887-363398 1e-07 6_[-2]_64 chrVII:319600-319999 1e-07 66_[-2]_4 chrXIV:725902-726405 1.5e-07 27_[-2]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMBSGGRRTCGAACCSVKGAYCTYCNSRTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DMBSGGRRTCGAACCSVKGAYCTYCNSRTT width=30 seqs=55 chrXII:734652-735035 ( 46) TAGCGGGATCGAACCGCTGATCCCCGCGTT 1 chrXVI:880120-880548 ( 19) TAGCGGGATCGAACCGCTGATCCCCGCGTT 1 chrIX:210462-210938 ( 52) TAGCGGGATCGAACCGCTGATCCCCGCGTT 1 chrIX:183249-183715 ( 15) TAGCGGGATCGAACCGCTGATCCCCGCGTT 1 chrII:197233-197904 ( 13) TAGCGGGATCGAACCGCTGATCCCCGCGTT 1 chrIV:667800-668261 ( 34) TAGCGGGATCGAACCGCTGATCCCCGCGTT 1 chrIV:1016873-1017554 ( 51) GCGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrIII:123457-123791 ( 10) GCCGGGACTCGAACCCGGGACCTCCCGCAC 1 chrIV:568653-569200 ( 41) GATGGGGGTCGAACCCATAATCTTCTGATT 1 chrXIII:131656-132101 ( 4) GATGGGGGTCGAACCCATAATCTTCTGATT 1 chrVII:541567-542167 ( 68) ACGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrVII:736135-736666 ( 25) GATGGGGGTCGAACCCATAATCTTCTGATT 1 chrXVI:209952-210509 ( 19) ACGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrV:138433-138966 ( 52) GATGGGGGTCGAACCCATAATCTTCTGATT 1 chrII:645001-645386 ( 59) ACGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrVII:405292-405693 ( 63) GATGGGGGTCGAACCCATAATCTTCTGATT 1 chrVII:828546-828994 ( 10) GATGGGGGTCGAACCCATAATCTTCTGATT 1 chrX:374258-374358 ( 55) GATGGGGGTCGAACCCATAATCTTCTGATT 1 chrVII:185540-185951 ( 26) TAGGGGGCTCGAACCCCTAACCTTATGATT 1 chrV:135182-135733 ( 25) TAGGGGGCTCGAACCCCTAACCTTATGATT 1 chrX:531631-531731 ( 54) GCCCGGAATCGAACCGGGGGCCCAACGATG 1 chrXIII:183725-184136 ( 25) GCCCGGAATCGAACCGGGGGCCCAACGATG 1 chrIX:174856-175320 ( 29) AATCGGATTTGAACCGATGATCTCCACATT 1 chrII:266160-266665 ( 52) AATCGGATTTGAACCGATGATCTCCACATT 1 chrIV:434017-434600 ( 13) AATCGGATTTGAACCGATGATCTCCACATT 1 chrXIV:560452-561018 ( 15) AATCGGATTTGAACCGATGATCTCCACATT 1 chrX:233706-233806 ( 68) GCCAGGACTCGAACCTGGAATCTCCTGGTT 1 chrXIV:567890-568463 ( 55) GCTGGGAATTGAACCCAGGGCCTCTCGCAT 1 chrVI:210442-210892 ( 9) GGGGCGAGTCGAACGCCCGATCTCAAGATT 1 chrIV:946123-946579 ( 63) GGGGCGAGTCGAACGCCCGATCTCAAGATT 1 chrX:354051-354151 ( 24) GGGGCGAGTCGAACGCCCGATCTCAAGATT 1 chrXI:578801-579234 ( 57) TAGGGGGCTCGAACCCCTGACATTTCGGTA 1 chrIV:488575-489066 ( 34) ACCGAGGTTCGAACTCGGGATCTTCGCCGT 1 chrXII:374133-374678 ( 36) GCCAGGACTTGAACCTGGAATCTTCTGGTT 1 chrV:492145-492643 ( 15) GCCAGGACTTGAACCTGGAATCTTCTGGTT 1 chrXI:219709-220119 ( 67) GTCCGGAATCGAACCGGAGACCTCTCCCAT 1 chrXIII:320981-321412 ( 8) GTCCGGAATCGAACCGGAGACCTCTCCCAT 1 chrVI:204786-205168 ( 4) GTCCGGAATCGAACCGGAGACCTCTCCCAT 1 chrIV:1075316-1075712 ( 15) ACCGAGGATCGAACTCGGGACCTTTGCCGT 1 chrX:390894-390994 ( 4) GGGGAGGTTCGAACTCTCGACCTTCAGATT 1 chrXIV:96070-96482 ( 22) TACGAGAATCGAACCCGTGTCCCCACCTTG 1 chrVI:137264-137745 ( 39) AGTGAGGGTTGAACTCACGATCTTGCGATT 1 chrVII:730934-731395 ( 60) AGTGAGGGTTGAACTCACGATCTTGCGATT 1 chrXIV:102540-102980 ( 43) AGTGAGGGTTGAACTCACGATCTTGCGATT 1 chrXIII:808066-808538 ( 1) ACCCGGATTCGAACTGGGGTTGTTCGGATC 1 chrIV:1095146-1095645 ( 32) TCTGTGGATCGAACACAGGACCTCCAGATA 1 chrXIII:463329-463834 ( 58) ACGGGGAATTGAACCCCGATCTGGCACGCG 1 chrXII:793725-794176 ( 53) ACGGGGAATTGAACCCCGATCTGGCACGCG 1 chrIX:324059-324547 ( 57) ACGGGGAATTGAACCCCGATCTGGCACGCG 1 chrX:517666-517766 ( 1) GCTCGGTTTCGATCCGAGGACATCAGGGTT 1 chrVII:706951-707362 ( 9) ACTCAGGATCGAACTAAGGACCAACAGATT 1 chrXVI:744098-744548 ( 46) TGTCAGAATTGAACTAACGACCTTTGCATT 1 chrXIII:362887-363398 ( 7) TCCTAGAATCGAACCAGGGTTTCATCGGCC 1 chrVII:319600-319999 ( 67) TCCTAGAATCGAACCAGGGTTTCATCGGCC 1 chrXIV:725902-726405 ( 28) GCGCGAGTTCGAACCTCGCATCCTTCAGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMBSGGRRTCGAACCSVKGAYCTYCNSRTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42103 bayes= 9.40066 E= 1.6e-237 -8 -1243 134 -36 22 128 -24 -259 -1243 66 115 8 -259 108 166 -317 -71 -166 208 -417 -417 -1243 251 -1243 69 -1243 140 -417 29 -44 84 -100 -1243 -1243 -1243 161 -1243 211 -1243 -36 -1243 -1243 254 -1243 161 -1243 -1243 -1243 158 -1243 -1243 -417 -1243 254 -1243 -1243 -417 215 -166 -100 -217 166 84 -217 8 108 66 -417 -259 -24 128 22 -26 -324 204 -1243 119 -1243 -166 -71 -1243 134 -1243 78 -317 218 -324 -100 -417 76 -166 96 -185 146 -166 22 -47 161 -166 -85 -47 100 22 -59 -417 108 184 -1243 53 -44 115 -417 -185 -92 -224 125 -259 -124 8 108 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMBSGGRRTCGAACCSVKGAYCTYCNSRTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 55 E= 1.6e-237 0.309091 0.000000 0.436364 0.254545 0.381818 0.418182 0.145455 0.054545 0.000000 0.272727 0.381818 0.345455 0.054545 0.363636 0.545455 0.036364 0.200000 0.054545 0.727273 0.018182 0.018182 0.000000 0.981818 0.000000 0.527273 0.000000 0.454545 0.018182 0.400000 0.127273 0.309091 0.163636 0.000000 0.000000 0.000000 1.000000 0.000000 0.745455 0.000000 0.254545 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.981818 0.000000 0.000000 0.018182 0.000000 1.000000 0.000000 0.000000 0.018182 0.763636 0.054545 0.163636 0.072727 0.545455 0.309091 0.072727 0.345455 0.363636 0.272727 0.018182 0.054545 0.145455 0.418182 0.381818 0.272727 0.018182 0.709091 0.000000 0.745455 0.000000 0.054545 0.200000 0.000000 0.436364 0.000000 0.563636 0.036364 0.781818 0.018182 0.163636 0.018182 0.290909 0.054545 0.636364 0.090909 0.472727 0.054545 0.381818 0.236364 0.527273 0.054545 0.181818 0.236364 0.345455 0.200000 0.218182 0.018182 0.363636 0.618182 0.000000 0.472727 0.127273 0.381818 0.018182 0.090909 0.090909 0.036364 0.781818 0.054545 0.072727 0.181818 0.690909 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMBSGGRRTCGAACCSVKGAYCTYCNSRTT MEME-2 regular expression -------------------------------------------------------------------------------- [GAT][CA][GTC][GC][GA]G[AG][AG]T[CT]GAACC[CG][CAG][GT][GA][AT][TC]C[TC][CT][CA][CATG][GC][AG]TT -------------------------------------------------------------------------------- Time 656.56 secs. ******************************************************************************** ******************************************************************************** MOTIF WACAYCCRTACAYY MEME-3 width = 14 sites = 82 llr = 974 E-value = 8.1e-099 ******************************************************************************** -------------------------------------------------------------------------------- Motif WACAYCCRTACAYY MEME-3 Description -------------------------------------------------------------------------------- Simplified A 37:9:::517:8:2 pos.-specific C 219:6a9:2:a255 probability G :1:::::5:3:::: matrix T 5:::4:1:7:::54 bits 2.5 * * 2.3 * * 2.0 * ** * 1.8 * ** * Relative 1.5 * ** * Entropy 1.3 ***** * (17.1 bits) 1.0 ***** *** 0.8 ****** **** 0.5 ************* 0.3 ************** 0.0 -------------- Multilevel TACACCCATACATC consensus A T GCG CT sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WACAYCCRTACAYY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------- chrXI:666436-666805 - 42 3.09e-08 ACACCCACAC CACACCCACACACC CACAACCCTA chrIII:30-535 + 52 3.09e-08 ACACCCACAC CACACCCACACACC ACACCCACAC chrIV:48-302 + 11 3.09e-08 ACACCACACC CACACCCACACACC ACACACTACC chrV:6162-6575 + 30 3.09e-08 CACCCACACC CACACCCACACACC ATGCTCACCT chrXII:5386-5957 + 44 3.09e-08 ATATATACAC CACACCCACACACC ACACCCACAC chrXII:1064864-1065372 - 25 3.09e-08 CCACACCCAC CACACCCACACACC ACACACACAC chrXIII:5265-5874 + 55 3.09e-08 ACCCACACAC CACACCCACACACC CTAACACAAT chrXI:431332-431638 + 58 4.91e-08 ACAGCGCAAA TACACCCATACACT ATTTTTACAT chrII:89674-89926 - 51 7.61e-08 TTTGTGACTT TACATCCATACACC CTCTTTAACA chrXIII:145863-146269 + 67 7.61e-08 AGCATTTTTG TACATCCATACACC ATACACCATA chrXII:932080-932506 - 32 7.61e-08 TTACATAGTA TACATCCGTACATC CGTACATCCG chrVII:555303-555666 + 75 1.07e-07 ACATCCCTTT TACACCCGTGCATT AAAGGTGTTT chrV:396204-396556 + 48 1.07e-07 CCCTGTTGTA TACATCCGTACACT TTTGTGAACC chrIV:1355744-1356007 - 14 1.49e-07 CGGTTAAAAT TACACCCATACATT TATAGTATTT chrVIII:125943-126292 + 34 1.49e-07 AAGACGTTAA TGCATCCGTACACC TACATCTTTA chrXIV:783866-784166 - 71 1.49e-07 CCACACACAC CACACCCACACACT ACCCTAACAC chrXIII:225330-225711 + 74 2.75e-07 ATCCGTGCAT TACATCCGTACATT CTATTTTTTA chrIX:68205-68495 + 49 2.75e-07 TTGAGTTTAT TACATCCGTACATT ACTAAGATGT chrVII:726434-726756 + 58 2.75e-07 ATACCCTATA TACACCCATACCCT ATTTTTAAAT chrIII:163455-163860 - 40 3.39e-07 GTTAAATTAC CGCACCCACGCACC CAACCGCGGC chrIV:835768-836152 + 40 3.39e-07 CAACGGCGCG CACACCCACGCCCC GCAACCGCAC chrIV:411292-411626 + 25 3.39e-07 AAACAAATCA AACACCCACACCCC GGGCACCCAA chrIV:1300949-1301325 + 21 4.62e-07 TTTTCCTTCA AACATCCGTGCACT GTGGATGTTT chrXV:79786-80099 - 56 4.62e-07 ACTCCATGTA AACACCCGTACATA TTAAATAAGT chrVIII:556628-557242 - 5 4.62e-07 ACACCACACC CACACCCACACACA CCAC chrXVI:731931-732333 + 21 5.62e-07 GCATCGTCAG TACACCCATACCTT TAGGATGGTT chrV:110516-110898 + 20 5.62e-07 ATGTGACAAA CACACCCAGACACC TCAATAGACA chrXV:94487-94837 + 22 5.62e-07 AAATAGAATT AACACCCATGCATT ATTGTCTTCG chrXIII:924140-924426 - 70 5.62e-07 ACACACACAC CACACCCACACCCT AACACTACCC chrXV:678854-679163 - 52 7.36e-07 TTTGGGACCA TACATCCGTACATA TTGTGGACCC chrXII:241570-241994 + 74 7.36e-07 TTTCCCTTTT TACATCCGTACATA TAAAATGTAA chrV:423119-423442 + 41 7.36e-07 GCTGCATATT TACCTCCGTACACC TTCTACACCC chrIV:321693-321930 + 37 7.36e-07 TTCATACCTT TACCTCCGTACACC AATCTTTATT chrII:45011-45334 + 47 8.72e-07 GAGACAATCA TGCATCCGTACATT CTATGTATGT chrII:605735-606095 + 50 8.72e-07 CTGACAGTTT TACACCTGTACATC TTCACCATCA chrV:53549-54007 - 7 1.04e-06 TACCCTGTTT AACATCCGAACACC AAATAT chrIV:341293-341615 - 39 1.30e-06 AGTCTACTTT TCCATCCGTACATT TTAACACCCA chrXII:781468-781849 - 48 1.30e-06 CTAGAGAAAA TGCATCCGTGCATT TTCATAAACC chrVII:366107-366450 - 9 1.30e-06 TGATCATATA AACACCCACACATA TCTATAAA chrVII:534788-535282 - 19 1.30e-06 ATTTTATATA TGCATCCGTGCATT TGTGTAACCC chrVIII:505840-506195 - 34 1.46e-06 GAGACAATTA TGCATCCATACATT TCACCCAGAC chrXII:796410-796912 - 23 1.46e-06 TTCTATCTTT TGCATCCGTGCCTC CTGGATAATA chrXII:922116-922536 + 68 1.46e-06 GTTTGAAATT GACACCCGTACATA TTCCAATTCT chrXIV:444486-444783 - 37 1.46e-06 TTCTACGGTC TCCATCCGTACCTC TTTAAATCCG chrIV:358130-358393 - 38 1.46e-06 TGGTGTACAC ACCACCCATACATT ATCTGACAAG chrVIII:148953-149285 - 13 1.56e-06 CCCATACATT TTCACCCATGCACC ATTGGATTAT chrXV:216241-216659 + 50 1.56e-06 ATTTTATCGG AACATCCGAGCACC CGCGCCTTCC chrXVI:281631-281857 + 71 1.67e-06 CTTACCTCTT TACACCCTTACACT TCCTTTGATT chrXV:167958-168466 - 26 1.87e-06 GGCGGCTTTA AACACCCGTGCCTA TATTTAAGTT chrVII:788354-788755 - 25 1.87e-06 TATTCCTTAC AACATCCGTGCATA CTCTAAACCC chrXV:1004129-1004371 - 47 1.87e-06 AAAAAAAAAA AACACCCTTGCACC CATAACATAC chrXI:618840-619210 - 36 2.12e-06 AAATACTATT TCCATCCGTGCCTC TAATAGATTT chrVIII:74931-75410 + 32 2.12e-06 CCTGCAAGTT CACACCTGTACATT TTCTACATCC chrII:60848-61297 - 51 2.12e-06 AGACTACATT AACATCTGTACACC CCCAACTGCT chrV:140473-140859 - 59 2.28e-06 GGACGCACAA AGCACCCATACCTT TTACAATGCC chrXIV:63131-63577 - 14 2.28e-06 AATACTACTT TACATCCGAACATT TTAGCAACCC chrXII:1028192-1028546 + 78 2.43e-06 AAGACAAAAT ATCACCCATGCACC AAAATGTAT chrXIII:551377-551788 + 86 2.43e-06 AGTACATATT GGCACCCATACATT A chrIV:1401247-1401567 + 75 2.67e-06 CCAATCATTT TCCACCCACACATA TATTACCCTT chrX:73385-73485 + 49 2.67e-06 CACATCATTG TACATCCTTGCACC ACACTGAAAA chrXI:313305-313681 + 52 3.00e-06 AGTTTTTGGT TACATCTGCACATC TGGTTGAATA chrVII:648971-649407 - 10 3.00e-06 GGACATTTTA AACATCCGTACAAC GAGAACCCA chrXII:897719-898017 + 42 3.26e-06 AGAATTCTAC AACACCTGTACCTC CAAAAAACCC chrXV:505133-505488 + 58 3.48e-06 TGAACCTTAT CACACCCAAACATA TGATATGGTA chrVIII:382934-383368 - 17 4.22e-06 AAAAGACAGT GACATCCGAACATC CGATACACCC chrXV:968183-968308 - 74 4.22e-06 TCGAGCAGCG CACGCCCACGCACC CCACGCTTTT chrXV:779713-780085 + 53 4.60e-06 AATTTTTTCA CCCCCCCATACCCC ACATACCTTT chrXV:866571-866916 + 44 4.90e-06 ATTTTTTCCC TACATCCAAGCATT CTGGGTTTGT chrIX:257380-257703 + 41 4.90e-06 GGTATGTGAC GACATCTGTACACC GCAAAGTTGT chrXVI:188648-188902 + 64 5.83e-06 CGTGACTTTT AAAACCCATGCATC GGTTACTATG chrIV:1450945-1451229 - 46 5.83e-06 TTTAGACATT AACACCTGTACATA TTTGTATTTT chrII:332285-332725 + 69 5.83e-06 ATTTCCTTGC TGCACCCATACAAT TCTAAACCCA chrIII:178365-178677 - 1 6.36e-06 GGACTTAATA AACATCTGTACATT chrXIII:124355-124723 - 24 7.27e-06 AGACTGCTAT TAAATCCGTACATT ATTAAAATGT chrXVI:520191-520515 + 60 8.63e-06 GCCTGAGTGT TCCACCCAGGCCTC GCCGGAGGAA chrX:651215-651315 + 69 8.63e-06 TTTATACAAC AACACCCATATACC CATAATTATT chrVIII:307956-308356 - 35 1.06e-05 CAAATATTCT AGCATCCAAACATT TGTCAGATAG chrXVI:699947-700352 + 69 1.30e-05 CCCACAAGTG ATCCCCCACACACC ATAGCTTCAA chrXI:158223-158586 + 45 1.61e-05 TTCATTTATT TCAACCCGTGCACA CTGGAAATAA chrIV:117148-117577 + 57 1.70e-05 GTATTAATCT CAGACCCATACATA TCTACACCCA chrX:90089-90189 + 42 1.94e-05 CTTTTCAATT TGCACCTGGACATT CTCACCCATA chrV:362188-362467 + 72 2.94e-05 CCAAGAAATT TAAACCCATACAAT ATATTTCAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WACAYCCRTACAYY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXI:666436-666805 3.1e-08 41_[-3]_45 chrIII:30-535 3.1e-08 51_[+3]_35 chrIV:48-302 3.1e-08 10_[+3]_76 chrV:6162-6575 3.1e-08 29_[+3]_57 chrXII:5386-5957 3.1e-08 43_[+3]_43 chrXII:1064864-1065372 3.1e-08 24_[-3]_62 chrXIII:5265-5874 3.1e-08 54_[+3]_32 chrXI:431332-431638 4.9e-08 57_[+3]_29 chrII:89674-89926 7.6e-08 50_[-3]_36 chrXIII:145863-146269 7.6e-08 66_[+3]_20 chrXII:932080-932506 7.6e-08 31_[-3]_55 chrVII:555303-555666 1.1e-07 74_[+3]_12 chrV:396204-396556 1.1e-07 47_[+3]_39 chrIV:1355744-1356007 1.5e-07 13_[-3]_73 chrVIII:125943-126292 1.5e-07 33_[+3]_53 chrXIV:783866-784166 1.5e-07 70_[-3]_16 chrXIII:225330-225711 2.7e-07 73_[+3]_13 chrIX:68205-68495 2.7e-07 48_[+3]_38 chrVII:726434-726756 2.7e-07 57_[+3]_29 chrIII:163455-163860 3.4e-07 39_[-3]_47 chrIV:835768-836152 3.4e-07 39_[+3]_47 chrIV:411292-411626 3.4e-07 24_[+3]_62 chrIV:1300949-1301325 4.6e-07 20_[+3]_66 chrXV:79786-80099 4.6e-07 55_[-3]_31 chrVIII:556628-557242 4.6e-07 4_[-3]_82 chrXVI:731931-732333 5.6e-07 20_[+3]_66 chrV:110516-110898 5.6e-07 19_[+3]_67 chrXV:94487-94837 5.6e-07 21_[+3]_65 chrXIII:924140-924426 5.6e-07 69_[-3]_17 chrXV:678854-679163 7.4e-07 51_[-3]_35 chrXII:241570-241994 7.4e-07 73_[+3]_13 chrV:423119-423442 7.4e-07 40_[+3]_46 chrIV:321693-321930 7.4e-07 36_[+3]_50 chrII:45011-45334 8.7e-07 46_[+3]_40 chrII:605735-606095 8.7e-07 49_[+3]_37 chrV:53549-54007 1e-06 6_[-3]_80 chrIV:341293-341615 1.3e-06 38_[-3]_48 chrXII:781468-781849 1.3e-06 47_[-3]_39 chrVII:366107-366450 1.3e-06 8_[-3]_78 chrVII:534788-535282 1.3e-06 18_[-3]_68 chrVIII:505840-506195 1.5e-06 33_[-3]_53 chrXII:796410-796912 1.5e-06 22_[-3]_64 chrXII:922116-922536 1.5e-06 67_[+3]_19 chrXIV:444486-444783 1.5e-06 36_[-3]_50 chrIV:358130-358393 1.5e-06 37_[-3]_49 chrVIII:148953-149285 1.6e-06 12_[-3]_74 chrXV:216241-216659 1.6e-06 49_[+3]_37 chrXVI:281631-281857 1.7e-06 70_[+3]_16 chrXV:167958-168466 1.9e-06 25_[-3]_61 chrVII:788354-788755 1.9e-06 24_[-3]_62 chrXV:1004129-1004371 1.9e-06 46_[-3]_40 chrXI:618840-619210 2.1e-06 35_[-3]_51 chrVIII:74931-75410 2.1e-06 31_[+3]_55 chrII:60848-61297 2.1e-06 50_[-3]_36 chrV:140473-140859 2.3e-06 58_[-3]_28 chrXIV:63131-63577 2.3e-06 13_[-3]_73 chrXII:1028192-1028546 2.4e-06 77_[+3]_9 chrXIII:551377-551788 2.4e-06 85_[+3]_1 chrIV:1401247-1401567 2.7e-06 74_[+3]_12 chrX:73385-73485 2.7e-06 48_[+3]_38 chrXI:313305-313681 3e-06 51_[+3]_35 chrVII:648971-649407 3e-06 9_[-3]_77 chrXII:897719-898017 3.3e-06 41_[+3]_45 chrXV:505133-505488 3.5e-06 57_[+3]_29 chrVIII:382934-383368 4.2e-06 16_[-3]_70 chrXV:968183-968308 4.2e-06 73_[-3]_13 chrXV:779713-780085 4.6e-06 52_[+3]_34 chrXV:866571-866916 4.9e-06 43_[+3]_43 chrIX:257380-257703 4.9e-06 40_[+3]_46 chrXVI:188648-188902 5.8e-06 63_[+3]_23 chrIV:1450945-1451229 5.8e-06 45_[-3]_41 chrII:332285-332725 5.8e-06 68_[+3]_18 chrIII:178365-178677 6.4e-06 [-3]_86 chrXIII:124355-124723 7.3e-06 23_[-3]_63 chrXVI:520191-520515 8.6e-06 59_[+3]_27 chrX:651215-651315 8.6e-06 68_[+3]_18 chrVIII:307956-308356 1.1e-05 34_[-3]_52 chrXVI:699947-700352 1.3e-05 68_[+3]_18 chrXI:158223-158586 1.6e-05 44_[+3]_42 chrIV:117148-117577 1.7e-05 56_[+3]_30 chrX:90089-90189 1.9e-05 41_[+3]_45 chrV:362188-362467 2.9e-05 71_[+3]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WACAYCCRTACAYY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WACAYCCRTACAYY width=14 seqs=82 chrXI:666436-666805 ( 42) CACACCCACACACC 1 chrIII:30-535 ( 52) CACACCCACACACC 1 chrIV:48-302 ( 11) CACACCCACACACC 1 chrV:6162-6575 ( 30) CACACCCACACACC 1 chrXII:5386-5957 ( 44) CACACCCACACACC 1 chrXII:1064864-1065372 ( 25) CACACCCACACACC 1 chrXIII:5265-5874 ( 55) CACACCCACACACC 1 chrXI:431332-431638 ( 58) TACACCCATACACT 1 chrII:89674-89926 ( 51) TACATCCATACACC 1 chrXIII:145863-146269 ( 67) TACATCCATACACC 1 chrXII:932080-932506 ( 32) TACATCCGTACATC 1 chrVII:555303-555666 ( 75) TACACCCGTGCATT 1 chrV:396204-396556 ( 48) TACATCCGTACACT 1 chrIV:1355744-1356007 ( 14) TACACCCATACATT 1 chrVIII:125943-126292 ( 34) TGCATCCGTACACC 1 chrXIV:783866-784166 ( 71) CACACCCACACACT 1 chrXIII:225330-225711 ( 74) TACATCCGTACATT 1 chrIX:68205-68495 ( 49) TACATCCGTACATT 1 chrVII:726434-726756 ( 58) TACACCCATACCCT 1 chrIII:163455-163860 ( 40) CGCACCCACGCACC 1 chrIV:835768-836152 ( 40) CACACCCACGCCCC 1 chrIV:411292-411626 ( 25) AACACCCACACCCC 1 chrIV:1300949-1301325 ( 21) AACATCCGTGCACT 1 chrXV:79786-80099 ( 56) AACACCCGTACATA 1 chrVIII:556628-557242 ( 5) CACACCCACACACA 1 chrXVI:731931-732333 ( 21) TACACCCATACCTT 1 chrV:110516-110898 ( 20) CACACCCAGACACC 1 chrXV:94487-94837 ( 22) AACACCCATGCATT 1 chrXIII:924140-924426 ( 70) CACACCCACACCCT 1 chrXV:678854-679163 ( 52) TACATCCGTACATA 1 chrXII:241570-241994 ( 74) TACATCCGTACATA 1 chrV:423119-423442 ( 41) TACCTCCGTACACC 1 chrIV:321693-321930 ( 37) TACCTCCGTACACC 1 chrII:45011-45334 ( 47) TGCATCCGTACATT 1 chrII:605735-606095 ( 50) TACACCTGTACATC 1 chrV:53549-54007 ( 7) AACATCCGAACACC 1 chrIV:341293-341615 ( 39) TCCATCCGTACATT 1 chrXII:781468-781849 ( 48) TGCATCCGTGCATT 1 chrVII:366107-366450 ( 9) AACACCCACACATA 1 chrVII:534788-535282 ( 19) TGCATCCGTGCATT 1 chrVIII:505840-506195 ( 34) TGCATCCATACATT 1 chrXII:796410-796912 ( 23) TGCATCCGTGCCTC 1 chrXII:922116-922536 ( 68) GACACCCGTACATA 1 chrXIV:444486-444783 ( 37) TCCATCCGTACCTC 1 chrIV:358130-358393 ( 38) ACCACCCATACATT 1 chrVIII:148953-149285 ( 13) TTCACCCATGCACC 1 chrXV:216241-216659 ( 50) AACATCCGAGCACC 1 chrXVI:281631-281857 ( 71) TACACCCTTACACT 1 chrXV:167958-168466 ( 26) AACACCCGTGCCTA 1 chrVII:788354-788755 ( 25) AACATCCGTGCATA 1 chrXV:1004129-1004371 ( 47) AACACCCTTGCACC 1 chrXI:618840-619210 ( 36) TCCATCCGTGCCTC 1 chrVIII:74931-75410 ( 32) CACACCTGTACATT 1 chrII:60848-61297 ( 51) AACATCTGTACACC 1 chrV:140473-140859 ( 59) AGCACCCATACCTT 1 chrXIV:63131-63577 ( 14) TACATCCGAACATT 1 chrXII:1028192-1028546 ( 78) ATCACCCATGCACC 1 chrXIII:551377-551788 ( 86) GGCACCCATACATT 1 chrIV:1401247-1401567 ( 75) TCCACCCACACATA 1 chrX:73385-73485 ( 49) TACATCCTTGCACC 1 chrXI:313305-313681 ( 52) TACATCTGCACATC 1 chrVII:648971-649407 ( 10) AACATCCGTACAAC 1 chrXII:897719-898017 ( 42) AACACCTGTACCTC 1 chrXV:505133-505488 ( 58) CACACCCAAACATA 1 chrVIII:382934-383368 ( 17) GACATCCGAACATC 1 chrXV:968183-968308 ( 74) CACGCCCACGCACC 1 chrXV:779713-780085 ( 53) CCCCCCCATACCCC 1 chrXV:866571-866916 ( 44) TACATCCAAGCATT 1 chrIX:257380-257703 ( 41) GACATCTGTACACC 1 chrXVI:188648-188902 ( 64) AAAACCCATGCATC 1 chrIV:1450945-1451229 ( 46) AACACCTGTACATA 1 chrII:332285-332725 ( 69) TGCACCCATACAAT 1 chrIII:178365-178677 ( 1) AACATCTGTACATT 1 chrXIII:124355-124723 ( 24) TAAATCCGTACATT 1 chrXVI:520191-520515 ( 60) TCCACCCAGGCCTC 1 chrX:651215-651315 ( 69) AACACCCATATACC 1 chrVIII:307956-308356 ( 35) AGCATCCAAACATT 1 chrXVI:699947-700352 ( 69) ATCCCCCACACACC 1 chrXI:158223-158586 ( 45) TCAACCCGTGCACA 1 chrIV:117148-117577 ( 57) CAGACCCATACATA 1 chrX:90089-90189 ( 42) TGCACCTGGACATT 1 chrV:362188-362467 ( 72) TAAACCCATACAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WACAYCCRTACAYY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 14 n= 51591 bayes= 10.7861 E= 8.1e-099 -29 35 -182 50 113 -82 -24 -316 -275 245 -382 -1300 152 -182 -382 -1300 -1300 176 -1300 34 -1300 254 -1300 -1300 -1300 237 -1300 -158 61 -1300 143 -316 -194 35 -223 101 118 -1300 57 -1300 -1300 252 -1300 -474 136 -12 -1300 -1300 -316 139 -1300 64 -105 146 -1300 16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WACAYCCRTACAYY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 14 nsites= 82 E= 8.1e-099 0.268293 0.219512 0.048780 0.463415 0.719512 0.097561 0.146341 0.036585 0.048780 0.939024 0.012195 0.000000 0.939024 0.048780 0.012195 0.000000 0.000000 0.585366 0.000000 0.414634 0.000000 1.000000 0.000000 0.000000 0.000000 0.890244 0.000000 0.109756 0.500000 0.000000 0.463415 0.036585 0.085366 0.219512 0.036585 0.658537 0.743902 0.000000 0.256098 0.000000 0.000000 0.987805 0.000000 0.012195 0.841463 0.158537 0.000000 0.000000 0.036585 0.451220 0.000000 0.512195 0.158537 0.475610 0.000000 0.365854 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WACAYCCRTACAYY MEME-3 regular expression -------------------------------------------------------------------------------- [TAC]ACA[CT]CC[AG][TC][AG]CA[TC][CT] -------------------------------------------------------------------------------- Time 958.21 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1359233-1359783 2.44e-01 100 chrXV:900786-900953 2.59e-01 100 chrX:52663-52763 9.51e-01 100 chrVII:794184-794646 3.86e-06 51_[+1(1.53e-09)]_28 chrIV:340418-340611 9.97e-01 100 chrXV:216241-216659 2.95e-03 49_[+3(1.56e-06)]_10_[+3(2.94e-05)]_\ 13 chrVI:101152-101666 8.47e-07 16_[+1(4.73e-10)]_63 chrXV:620966-621366 1.60e-01 100 chrXII:589098-589277 4.39e-01 100 chrX:204496-204596 4.52e-02 65_[+1(4.46e-05)]_14 chrX:374258-374358 9.52e-11 16_[-1(4.46e-05)]_17_[+2(3.57e-13)]_\ 16 chrIV:338227-338343 6.01e-01 100 chrXIV:96070-96482 1.38e-12 21_[+2(5.10e-10)]_14_[-1(1.00e-08)]_\ 14 chrIV:411292-411626 1.33e-04 24_[+3(3.39e-07)]_14_[+3(1.23e-05)]_\ 34 chrIV:756121-756521 7.54e-01 100 chrXIII:572711-573216 2.74e-03 21_[-1(8.59e-07)]_58 chrXV:332852-333252 9.86e-01 100 chrIX:300100-300562 6.86e-01 100 chrIV:795953-796353 5.57e-02 100 chrVII:726434-726756 1.66e-03 40_[+3(2.75e-07)]_3_[+3(2.75e-07)]_\ 29 chrIV:449524-449659 8.84e-01 100 chrXIII:195905-196426 3.68e-07 34_[-1(4.73e-10)]_45 chrVII:534788-535282 9.31e-03 18_[-3(1.30e-06)]_68 chrVIII:109777-109888 7.55e-01 100 chrIV:1233171-1233292 9.82e-01 100 chrVIII:148953-149285 1.87e-03 12_[-3(1.56e-06)]_74 chrV:15013-15413 7.30e-01 100 chrXIV:764170-764314 8.16e-01 100 chrXI:431332-431638 3.89e-04 57_[+3(4.91e-08)]_5_[+3(6.61e-05)]_\ 10 chrIII:119096-119496 4.53e-02 100 chrIII:130461-130861 7.22e-01 100 chrXV:300811-301432 8.47e-07 25_[+1(4.73e-10)]_54 chrIII:128109-128509 9.72e-01 100 chrXV:505133-505488 1.21e-02 32_[+3(7.27e-06)]_11_[+3(3.48e-06)]_\ 29 chrI:166048-166480 3.68e-06 52_[+1(1.53e-09)]_27 chrXI:76938-77338 2.76e-01 100 chrX:390894-390994 1.82e-09 3_[+2(4.27e-10)]_15_[-1(8.59e-07)]_\ 31 chrXV:16017-16417 9.74e-01 100 chrIX:257380-257703 2.04e-02 12_[+3(9.80e-06)]_14_[+3(4.90e-06)]_\ 46 chrXV:673346-673746 8.57e-01 100 chrVII:28-174 2.68e-02 40_[-1(6.94e-05)]_39 chrIII:155630-155741 4.19e-01 100 chrXII:784176-784552 1.60e-06 39_[+1(1.53e-09)]_40 chrXII:794517-795083 5.77e-01 100 chrIV:964410-964810 5.31e-01 100 chrVII:543169-543569 4.13e-01 100 chrXV:337421-337821 7.96e-01 100 chrVII:842558-842958 7.06e-01 100 chrXVI:856698-857083 1.06e-08 61_[+1(8.30e-11)]_18 chrXIII:296795-297706 9.94e-01 100 chrIV:512650-513050 9.44e-01 100 chrVI:162014-162424 1.49e-04 58_[+1(2.74e-08)]_21 chrIV:1223871-1224271 8.41e-01 100 chrV:483414-483814 5.70e-01 100 chrIV:490873-491262 3.35e-01 100 chrVII:920857-920962 9.95e-01 100 chrV:61068-61441 4.60e-01 100 chrVI:204786-205168 5.97e-14 3_[+2(3.25e-10)]_15_[-1(8.30e-11)]_\ 31 chrVII:353624-354024 8.44e-01 100 chrIII:127550-127873 2.58e-04 54_[+1(1.15e-07)]_25 chrXV:670390-670492 9.76e-01 100 chrXII:749817-750217 9.79e-01 100 chrXVI:177584-177984 8.52e-01 100 chrII:170618-171018 2.27e-01 100 chrVII:828546-828994 4.24e-14 9_[+2(3.57e-13)]_14_[-1(8.80e-09)]_\ 26 chrVIII:388784-389213 3.70e-08 26_[-1(4.73e-10)]_53 chrXI:578801-579234 2.38e-08 56_[-2(1.26e-10)]_14 chrIII:292764-292975 9.15e-01 100 chrXI:7502-7902 7.39e-01 100 chrVII:648971-649407 9.88e-03 9_[-3(3.00e-06)]_77 chrVII:64206-64382 9.33e-01 100 chrXV:1004129-1004371 7.25e-03 46_[-3(1.87e-06)]_40 chrV:101343-101552 9.75e-01 100 chrXV:355297-355697 8.09e-01 100 chrXIII:736870-737270 9.89e-01 100 chrX:90089-90189 2.70e-02 41_[+3(1.94e-05)]_45 chrXIV:560452-561018 4.12e-12 14_[+2(2.13e-11)]_15_[-1(2.74e-08)]_\ 20 chrXI:457528-457928 1.01e-01 18_[+1(6.68e-05)]_61 chrX:538312-538412 2.31e-04 69_[+1(6.80e-08)]_10 chrX:506421-506521 6.97e-01 100 chrII:350574-350982 6.86e-01 100 chrIX:438883-439297 4.66e-03 100 chrIV:1201474-1201992 7.53e-04 66_[+1(6.80e-08)]_13 chrV:559980-560380 1.06e-01 100 chrVII:366107-366450 4.56e-04 8_[-3(1.30e-06)]_78 chrXIV:63131-63577 1.04e-02 13_[-3(2.28e-06)]_73 chrXIII:551377-551788 9.72e-03 10_[-3(5.14e-05)]_61_[+3(2.43e-06)]_\ 1 chrXIV:283030-283215 2.72e-01 100 chrX:212570-212670 2.70e-01 100 chrVIII:411219-411493 8.97e-01 100 chrII:60848-61297 3.34e-03 50_[-3(2.12e-06)]_36 chrV:396204-396556 5.56e-04 47_[+3(1.07e-07)]_4_[+3(3.52e-05)]_\ 21 chrIV:1213321-1213721 3.23e-01 100 chrXV:464206-464705 7.15e-07 44_[+1(4.73e-10)]_35 chrXIII:419138-419538 7.56e-01 100 chrXV:113545-114026 2.68e-04 66_[+1(2.74e-08)]_13 chrIV:576558-576958 6.21e-02 100 chrXV:115677-116077 9.64e-01 100 chrX:354051-354151 8.02e-08 23_[-2(4.09e-11)]_47 chrXV:866571-866916 7.80e-04 43_[+3(4.90e-06)]_5_[-3(7.94e-06)]_\ 24 chrV:438491-438916 4.64e-05 46_[+1(6.71e-09)]_33 chrII:605735-606095 1.46e-04 49_[+3(8.72e-07)]_37 chrII:9355-9800 3.12e-05 55_[+1(2.52e-07)]_24 chrV:465212-465399 9.06e-01 100 chrXIII:923409-923648 3.50e-01 100 chrV:492145-492643 1.38e-09 14_[+2(2.97e-10)]_15_[-1(1.01e-06)]_\ 20 chrI:143131-143473 2.81e-02 24_[+2(2.19e-05)]_46 chrXIII:268094-268494 9.67e-01 100 chrXI:450253-450653 9.88e-01 100 chrXV:621443-621843 6.33e-01 100 chrX:139814-139914 6.09e-01 100 chrII:226833-227336 1.30e-05 40_[+1(6.71e-09)]_39 chrXVI:810434-810896 4.99e-05 60_[+1(1.15e-07)]_19 chrXIII:924140-924426 7.53e-04 69_[-3(5.62e-07)]_17 chrXIII:168571-169073 1.12e-03 22_[+1(1.49e-06)]_57 chrXIV:397788-398188 1.64e-02 46_[+1(2.72e-05)]_33 chrVIII:152395-152795 1.62e-01 100 chrVIII:211994-212394 6.91e-01 100 chrV:441789-442565 2.39e-01 100 chrXVI:153412-153812 4.08e-01 100 chrVIII:121552-121952 9.00e-01 100 chrXIII:5265-5874 2.26e-04 22_[+3(3.09e-08)]_5_[+3(3.09e-08)]_\ 7_[+3(1.61e-05)]_24 chrIV:437488-437982 8.29e-01 100 chrIV:1016873-1017554 1.88e-09 50_[+2(7.56e-14)]_20 chrXV:709971-710405 1.99e-03 62_[+1(7.92e-07)]_17 chrI:229429-229689 7.91e-01 100 chrX:492157-492257 8.69e-01 100 chrXII:267760-268160 9.65e-01 100 chrXII:781468-781849 4.40e-03 29_[-3(3.70e-05)]_4_[-3(1.30e-06)]_\ 39 chrXIII:320981-321412 2.52e-13 7_[+2(3.25e-10)]_15_[-1(8.30e-11)]_\ 27 chrV:139737-140073 3.48e-01 100 chrIX:318042-318159 8.02e-01 100 chrIV:1021620-1022020 9.88e-01 100 chrIV:964611-965011 7.53e-01 100 chrIV:218371-218567 5.86e-01 100 chrXVI:515715-516115 9.90e-01 100 chrI:180948-181466 3.00e-01 100 chrXVI:338751-339096 1.58e-03 25_[-1(7.92e-07)]_54 chrXIII:56467-56867 7.24e-01 100 chrVII:254047-254529 3.44e-01 100 chrIV:1233714-1234061 8.94e-01 100 chrIV:1525324-1525699 9.36e-01 100 chrXVI:722028-722428 9.39e-01 100 chrVII:930757-931288 1.16e-04 30_[-1(2.74e-08)]_49 chrXII:932080-932506 3.83e-04 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chrV:408942-409086 9.97e-01 100 chrXII:796410-796912 8.86e-03 22_[-3(1.46e-06)]_64 chrXII:47093-47493 7.48e-01 100 chrIV:1354553-1354837 9.10e-01 100 chrX:517666-517766 1.44e-08 [+2(6.52e-09)]_14_[-1(7.92e-07)]_35 chrXV:250798-251198 8.74e-01 100 chrXVI:559991-560543 1.13e-03 51_[-1(2.16e-06)]_28 chrXIII:370649-371049 8.71e-01 100 chrXIII:296029-296429 7.11e-01 100 chrII:407800-407901 3.99e-01 100 chrXI:202812-203210 4.44e-05 37_[+1(6.80e-08)]_42 chrVIII:382934-383368 1.79e-03 16_[-3(4.22e-06)]_70 chrXVI:689306-689803 3.70e-05 60_[+1(7.69e-09)]_19 chrVI:191303-191850 4.11e-06 66_[-1(1.53e-09)]_13 chrIV:1228965-1229365 9.99e-01 100 chrXV:287987-288354 1.44e-03 71_[+1(1.49e-06)]_8 chrVII:727748-727977 9.29e-01 100 chrIV:1204362-1204762 2.80e-01 100 chrIV:322480-322586 2.49e-01 100 chrXI:219709-220119 1.95e-13 30_[+1(8.30e-11)]_15_[-2(3.25e-10)]_\ 4 chrXV:363716-364116 8.50e-01 100 chrVIII:125943-126292 8.89e-04 33_[+3(1.49e-07)]_[+3(3.33e-05)]_39 chrXIII:297836-298124 5.68e-01 100 chrIV:835768-836152 1.24e-03 39_[+3(3.39e-07)]_47 chrXI:637095-637495 6.15e-01 100 chrIX:68205-68495 5.63e-04 48_[+3(2.75e-07)]_38 chrV:463719-464119 7.62e-01 100 chrXI:18315-18715 7.39e-01 100 chrXI:52268-52668 8.59e-02 100 chrVIII:108037-108437 7.65e-01 100 chrIV:992607-992999 1.09e-04 78_[+1(2.74e-08)]_1 chrXVI:412493-412683 7.20e-01 100 chrII:89674-89926 1.36e-04 30_[-3(2.67e-06)]_6_[-3(7.61e-08)]_\ 36 chrIV:435403-435503 4.43e-01 100 chrXIII:747735-748211 4.73e-05 19_[-1(8.80e-09)]_60 chrIX:104208-104315 8.63e-01 100 chrVII:792033-792433 8.82e-01 100 chrXII:818438-818779 3.83e-03 50_[+1(1.73e-06)]_29 chrIII:30-535 2.12e-05 2_[+3(3.09e-08)]_14_[+3(4.62e-07)]_\ 7_[+3(3.09e-08)]_13_[+3(4.62e-07)]_8 chrX:519476-519576 9.55e-01 100 chrIII:114491-114891 5.79e-02 40_[-1(6.18e-05)]_39 chrVII:845422-845864 2.98e-05 55_[+1(2.74e-08)]_24 chrV:462421-462821 8.03e-01 100 chrXII:752024-752424 8.47e-01 100 chrXIV:546909-547318 8.16e-07 30_[+1(4.73e-10)]_49 chrVII:561414-561997 2.22e-06 67_[-1(6.71e-09)]_12 chrIV:323020-323420 7.43e-01 100 chrIV:324399-324799 9.93e-01 100 chrXII:691605-692005 2.43e-01 100 chrIV:341293-341615 1.68e-03 38_[-3(1.30e-06)]_48 chrXVI:797778-798178 9.93e-01 100 chrIV:1302590-1302990 6.62e-01 100 chrXIV:282195-282356 9.74e-01 100 chrXII:813656-814056 1.53e-01 100 chrXI:666436-666805 4.36e-05 41_[-3(3.09e-08)]_14_[-3(1.30e-06)]_\ 17 chrXIV:384884-385284 5.78e-01 100 chrVII:364842-365242 9.02e-01 100 chrIV:1095146-1095645 1.28e-06 31_[+2(1.95e-09)]_39 chrXI:309552-309749 9.86e-02 26_[-3(9.59e-05)]_60 chrVIII:556108-556293 5.45e-01 100 chrVII:827042-827148 7.46e-01 100 chrIV:657815-658215 7.05e-02 100 chrX:483748-483848 5.41e-01 100 chrXIII:225330-225711 4.13e-04 73_[+3(2.75e-07)]_13 chrVII:774109-774556 1.25e-06 66_[+1(8.30e-11)]_13 chrI:142503-142628 9.70e-01 100 chrVIII:85186-85590 3.11e-05 12_[-1(6.71e-09)]_67 chrX:702648-702748 8.48e-01 100 chrV:451842-451976 9.50e-01 100 chrX:74652-74752 9.98e-01 100 chrIV:1150655-1151168 6.37e-06 59_[-1(1.53e-09)]_20 chrVIII:105592-105992 7.09e-01 100 chrIV:1450945-1451229 3.99e-03 45_[-3(5.83e-06)]_41 chrX:413834-413934 7.87e-01 100 chrIV:830453-830853 3.97e-01 100 chrIII:178365-178677 1.59e-02 [-3(6.36e-06)]_3_[+3(2.94e-05)]_69 chrX:531631-531731 8.78e-13 19_[+1(2.74e-08)]_13_[-2(5.24e-12)]_\ 17 chrIV:488575-489066 2.17e-10 33_[+2(2.46e-10)]_16_[-1(1.72e-07)] chrIV:1075316-1075712 9.28e-09 14_[+2(3.56e-10)]_15_[-1(6.30e-06)]_\ 20 chrX:542785-542885 1.12e-03 54_[-1(1.49e-06)]_25 chrXIII:124355-124723 1.13e-02 4_[+3(1.15e-05)]_5_[-3(7.27e-06)]_\ 63 chrXVI:56074-56513 1.04e-03 10_[-1(2.87e-06)]_69 chrV:470829-471149 9.85e-01 100 chrIII:293840-294121 7.85e-01 100 chrXI:302636-303201 1.47e-03 49_[+1(2.87e-06)]_30 chrII:167903-168182 1.75e-02 41_[+3(4.85e-05)]_45 chrVIII:150440-150561 9.87e-01 100 chrXI:29-232 5.54e-03 73_[-1(5.05e-05)]_6 chrX:516023-516123 6.98e-01 100 chrXV:805777-806177 4.11e-01 100 chrV:53549-54007 2.02e-04 6_[-3(1.04e-06)]_80 chrIII:177334-177536 7.29e-01 100 chrXI:55479-55879 8.30e-01 100 chrVI:193520-193920 2.87e-02 100 chrII:232479-232879 9.70e-01 100 chrV:135182-135733 2.78e-13 24_[+2(3.61e-12)]_15_[-1(6.80e-08)]_\ 10 chrIV:220784-221184 7.37e-01 100 chrXIII:466099-466499 8.87e-01 100 chrXII:790345-790745 4.32e-01 100 chrXIV:619766-620001 3.20e-01 100 chrV:469192-469744 4.53e-05 38_[+1(6.71e-09)]_41 chrIII:135022-135122 1.73e-01 100 chrXIII:259060-259517 9.81e-01 100 chrXIII:420470-420913 2.95e-01 100 chrVI:210442-210892 4.18e-10 8_[+2(4.09e-11)]_31_[-1(1.49e-06)]_\ 10 chrXI:493871-494271 9.13e-01 100 chrXVI:407625-407787 4.68e-01 100 chrII:236890-237053 7.56e-01 100 chrIX:174856-175320 1.39e-07 28_[-2(2.13e-11)]_42 chrVII:185540-185951 2.78e-13 25_[+2(3.61e-12)]_15_[-1(6.80e-08)]_\ 9 chrXIII:504665-505297 3.16e-01 100 chrIV:410190-410540 3.31e-07 63_[+1(8.30e-11)]_16 chrXII:867840-868240 6.51e-01 100 chrIV:492305-492514 7.94e-01 100 chrIV:191338-191738 9.40e-01 100 chrII:169406-169538 9.58e-01 100 chrIX:115319-115472 4.70e-01 100 chrX:523778-523878 2.22e-06 77_[-1(6.71e-09)]_2 chrVII:879561-879961 5.31e-01 100 chrXII:932759-933159 9.80e-01 100 chrV:491343-491542 2.79e-01 100 chrVII:736135-736666 5.18e-09 24_[-2(3.57e-13)]_46 chrIV:1302091-1302300 7.26e-01 100 chrXII:690162-690317 8.96e-01 100 chrX:541275-541375 3.62e-02 37_[+1(4.46e-05)]_42 chrVII:799726-800126 9.34e-01 100 chrXI:304857-305257 9.08e-01 100 chrIV:1202438-1202838 4.63e-01 100 chrXV:978034-978326 1.30e-01 100 chrXII:167814-168227 1.87e-05 34_[-1(6.71e-09)]_45 chrIV:1355744-1356007 1.00e-03 13_[-3(1.49e-07)]_10_[-3(9.75e-07)]_\ 49 chrXVI:860069-860552 9.68e-01 100 chrXVI:937187-937587 7.06e-01 100 chrV:449489-450068 9.51e-01 100 chrXV:79786-80099 1.24e-03 55_[-3(4.62e-07)]_31 chrXI:490714-491145 6.98e-01 100 chrIV:1300949-1301325 1.83e-03 20_[+3(4.62e-07)]_3_[-3(3.70e-05)]_\ 49 chrX:422673-422773 1.01e-03 38_[+1(8.59e-07)]_41 chrIX:27-317 4.86e-01 100 chrVIII:466737-467224 2.76e-04 59_[+1(5.46e-08)]_20 chrXI:618840-619210 2.10e-03 6_[+3(1.51e-05)]_15_[-3(2.12e-06)]_\ 51 chrXII:144035-144435 7.78e-01 100 chrXV:167958-168466 4.04e-03 25_[-3(1.87e-06)]_4_[+3(2.94e-05)]_\ 43 chrXVI:185003-185403 2.04e-01 100 chrXIII:191689-192089 9.15e-01 100 chrXIV:721897-722297 1.73e-01 100 chrXVI:942228-942385 5.11e-02 100 chrXI:791-998 3.58e-01 100 chrXV:1073538-1073938 8.96e-01 100 chrVI:144207-144607 9.96e-01 100 chrIX:297513-297913 6.46e-02 35_[-2(5.51e-05)]_35 chrXII:899378-899478 8.79e-01 100 chrXVI:933457-933599 9.59e-01 100 chrX:267385-267485 5.31e-01 100 chrV:430998-431654 4.60e-04 69_[-1(4.76e-07)]_10 chrIV:1180870-1181270 7.77e-01 100 chrII:414919-415019 5.80e-01 100 chrXII:195318-195453 9.96e-01 100 chrXVI:880120-880548 2.62e-16 18_[+2(2.29e-14)]_16_[-1(9.40e-10)]_\ 15 chrVII:541567-542167 1.74e-10 32_[+1(8.37e-05)]_14_[-2(3.57e-13)]_\ 3 chrXIV:758834-759234 8.90e-01 100 chrVIII:505840-506195 2.61e-03 33_[-3(1.46e-06)]_53 chrXIII:131656-132101 4.24e-14 3_[+2(3.57e-13)]_14_[-1(8.80e-09)]_\ 32 chrXII:673729-674218 7.77e-01 100 chrVII:412151-412604 5.28e-05 19_[-1(6.71e-09)]_60 chrVII:146143-146543 2.23e-01 100 chrXVI:622422-622833 2.44e-04 33_[-1(2.16e-06)]_46 chrVII:171006-171106 6.49e-01 100 chrXII:712986-713557 9.77e-01 100 chrXI:109727-109921 9.80e-01 100 chrIII:131821-132221 9.24e-01 100 chrII:514299-514699 9.89e-02 100 chrVII:422887-423323 4.48e-04 36_[+1(3.99e-07)]_43 chrXV:468999-469399 6.45e-01 100 chrXI:140820-141350 7.50e-02 33_[-1(8.37e-05)]_46 chrVI:134050-134450 5.50e-01 100 chrIV:568653-569200 4.24e-14 5_[+1(8.80e-09)]_14_[-2(3.57e-13)]_\ 30 chrVII:882495-882869 5.35e-01 100 chrXVI:744098-744548 4.26e-10 10_[+1(5.46e-08)]_14_[-2(1.49e-08)]_\ 25 chrX:213621-213721 8.75e-01 100 chrXII:92314-92803 7.15e-07 39_[+1(4.73e-10)]_40 chrXIV:725902-726405 5.27e-04 27_[-2(1.51e-07)]_43 chrXIII:362887-363398 9.97e-04 6_[-2(1.03e-07)]_64 chrXIII:808066-808538 3.29e-11 [+2(1.95e-09)]_14_[-1(3.08e-08)]_35 chrXV:110846-111253 1.39e-04 13_[-1(1.00e-08)]_66 chrXIII:57643-58043 9.24e-01 100 chrXV:150043-150443 6.15e-01 100 chrIII:163455-163860 8.55e-05 39_[-3(3.39e-07)]_16_[-3(1.15e-05)]_\ 17 chrIII:300497-300897 9.99e-01 100 chrVIII:553393-553793 3.84e-01 100 chrVI:137264-137745 4.91e-07 38_[+2(7.87e-10)]_32 chrXIII:194764-195164 2.37e-01 100 chrXVI:516538-516938 9.02e-02 100 chrXVI:188648-188902 2.90e-04 10_[+1(3.75e-05)]_32_[+3(5.83e-06)]_\ 23 chrII:234911-235311 7.07e-01 100 chrXIV:631716-632177 1.57e-05 [-1(6.80e-08)]_79 chrXII:796912-797371 9.85e-01 100 chrXVI:935688-936088 6.41e-01 100 chrXV:710897-711297 9.98e-01 100 chrXII:734652-735035 2.62e-16 8_[+1(9.40e-10)]_16_[-2(2.29e-14)]_\ 25 chrV:311916-312353 2.37e-01 100 chrI:8357-8757 7.12e-01 100 chrXII:1063975-1064375 9.19e-01 100 chrVIII:307956-308356 8.61e-03 34_[-3(1.06e-05)]_52 chrIV:645061-645425 1.67e-05 10_[-1(3.08e-08)]_69 chrI:29-198 7.29e-02 100 chrX:675905-676005 3.59e-01 100 chrV:490658-490880 3.27e-01 100 chrVII:498060-498460 5.05e-01 100 chrIV:323221-323621 6.69e-01 100 chrXII:967953-968353 8.24e-01 100 chrIV:579663-579879 5.85e-01 100 chrII:417661-418061 8.10e-01 100 chrIV:899281-899681 5.01e-01 100 chrXII:791860-792018 6.54e-01 100 chrV:484859-485259 7.74e-01 100 chrXVI:520191-520515 6.78e-03 59_[+3(8.63e-06)]_27 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************