Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.035322
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.058098
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.082305
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.019127
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.078977
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background
Finished invoke:
  name: bg  status: 0  time: 0.028795
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 819.644676
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 101.157265
Invoking:
  centrimo -seqlen 464 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.260981
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.465683
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background -primary TAAYCNKRAGRTCMBSGGTTCGATYCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.556196
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background -primary CYTWAMCCACTRSRCCAHRNRVSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.603487
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background -primary YACAYCCRYACATH /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.403739
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background -primary ARAAAAD /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.77335
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background -primary CCAACTKG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.28731
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.258186
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background -primary GTGGTMTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.24863
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.283683
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background -primary TAYATACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.249836
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background -primary SAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.640346
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background -primary AAAGCGWG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.210635
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background -primary GCCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.352213
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background -primary AGCACGGW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.233593
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background -primary MCCGGAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.27353
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background -primary GMTTAACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml
Finished invoke:
  name: spamo15  status: 0  time: 0.255497
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background --motif TAAYCNKRAGRTCMBSGGTTCGATYCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.343499
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background --motif CYTWAMCCACTRSRCCAHRNRVSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.329208
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background --motif YACAYCCRYACATH /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.313258
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background --motif ARAAAAD /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.209336
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background --motif CCAACTKG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.233032
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.240695
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background --motif GTGGTMTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.218811
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.237436
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background --motif TAYATACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.233059
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background --motif SAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.219476
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background --motif AAAGCGWG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.233207
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background --motif GCCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.228675
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background --motif AGCACGGW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.234298
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background --motif MCCGGAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.214273
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background --motif GMTTAACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/BY4741--MOT3.fa
Finished invoke:
  name: fimo15  status: 0  time: 0.231518
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.192827
Done