******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIV:117168-117553 1.0000 100 chrXVI:770804-771028 1.0000 100 chrVII:117420-117884 1.0000 100 chrIV:1489064-1489712 1.0000 100 chrIV:915667-915882 1.0000 100 chrVI:4429-4997 1.0000 100 chrV:69022-69380 1.0000 100 chrVII:882341-884052 1.0000 100 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chrIII:197449-197913 1.0000 100 chrIV:437536-437992 1.0000 100 chrIV:753194-753658 1.0000 100 chrXVI:581877-582393 1.0000 100 chrV:304013-304477 1.0000 100 chrXV:87420-87881 1.0000 100 chrV:148515-148667 1.0000 100 chrXIII:540378-540691 1.0000 100 chrXIV:24360-24824 1.0000 100 chrXV:876717-877181 1.0000 100 chrIV:490910-491256 1.0000 100 chrXV:877551-878015 1.0000 100 chrII:89053-89268 1.0000 100 chrX:348981-349081 1.0000 100 chrVIII:358283-358778 1.0000 100 chrXV:340114-340570 1.0000 100 chrVII:823261-823703 1.0000 100 chrXV:81526-81726 1.0000 100 chrXI:309530-309810 1.0000 100 chrXIII:632627-633091 1.0000 100 chrIV:980844-981270 1.0000 100 chrXI:432131-432362 1.0000 100 chrXII:639809-640190 1.0000 100 chrXVI:622399-622839 1.0000 100 chrXI:313283-313668 1.0000 100 chrXIV:507341-507533 1.0000 100 chrX:120652-120752 1.0000 100 chrXIV:619797-619991 1.0000 100 chrIV:1016913-1017490 1.0000 100 chrXVI:821580-822185 1.0000 100 chrIV:1305433-1305884 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 548 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 54800 N= 548 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.318 C 0.182 G 0.182 T 0.318 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT3/background): A 0.318 C 0.182 G 0.182 T 0.318 ******************************************************************************** ******************************************************************************** MOTIF CYTWAMCCACTRSRCCAHRNRVSC MEME-1 width = 24 sites = 77 llr = 1195 E-value = 1.8e-190 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYTWAMCCACTRSRCCAHRNRVSC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 111365:2a::524::a3323411 pos.-specific C 6321:4a6:9:23:a8:5131359 probability G 122:11:2:::356::::42434: matrix T 14663::::1a1:::2:212111: bits 2.5 * 2.2 * * 2.0 * * 1.7 * * *** * Relative 1.5 * *** *** * Entropy 1.2 * *** **** * (22.4 bits) 1.0 * *** **** ** 0.7 * ***** ***** ** 0.5 * * ****** ****** ** 0.2 ******************* **** 0.0 ------------------------ Multilevel CTTTAACCACTAGGCCACGCGACC consensus C ATC A GCA AATACG sequence A T A G G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTWAMCCACTRSRCCAHRNRVSC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------ chrXI:219709-220131 - 25 4.70e-11 TAAGGGAGCG CGCTACCGACTACGCCACACGCCC TATTTACTGT chrXVI:856716-857109 - 40 4.70e-11 TAAGGGAGCG CGCTACCGACTACGCCACACGCCC GAATCTTGTT chrIV:1305433-1305884 - 22 6.85e-11 TAATCTTTCG CCTTAACCACTCGGCCAAGTTGCC TTAATTTGTA chrIV:980844-981270 + 25 6.85e-11 TAATCTTTCG CCTTAACCACTCGGCCAAGTTGCC TCAATTTACA chrIV:437536-437992 - 58 6.85e-11 TAATCTTTCG CCTTAACCACTCGGCCAAGTTGCC TTACTAATGA chrXIII:259035-259451 + 23 6.85e-11 TAATCTTTCG CCTTAACCACTCGGCCAAGTTGCC ATACTAACTT chrXVI:819291-819786 - 41 9.87e-11 AGCACGGTGC CTTAACCAACTGGGCCAAGAGACC ATTCTATTGT chrXIV:569753-570093 + 44 9.87e-11 AGCACGGTGC CTTAACCAACTGGGCCAAGAGACC ACTGTTATCT chrIX:183259-183710 + 56 9.87e-11 AGCACGGTGC CTTAACCAACTGGGCCAAGAGACC AGGAATTTGT chrIII:227700-228201 - 42 1.98e-10 GAGTCTCTCG CCTTAACCACTCGGCCATAGTGCC ATTTCGATTT chrXVI:689341-689830 - 30 1.98e-10 AAGTCTGTCG CCTTAACCACTCGGCCATAGTGCC CAAAATAATC chrXII:214707-215151 + 53 3.24e-10 AAGGGAAGCG CGCTACCAACTGCGCCATGTGCCC TAAAACGCGT chrVII:794175-794647 - 56 3.24e-10 AAGGGAAGCG CGCTACCAACTGCGCCATGTGCCC GCAATCTATG chrXII:731859-732284 - 69 3.80e-10 TCTGACGC CTTAAACCACTCGGCCAAACTCCC ATTGTATGTT chrX:617723-617823 - 46 3.80e-10 AATCTGACGC CTTAAACCACTCGGCCAAACTCCC ATTGTTTGTT chrVII:823261-823703 - 50 1.45e-09 AAGCAGATGC CATAACCGACTAGACCACGAAACC ACTCTTATTG chrVIII:85179-85564 + 27 1.45e-09 AAGCAGATGC CATAACCGACTAGACCACGAAACC AAATTCTTAT chrX:378171-378271 - 33 1.45e-09 AAGCAGATGC CATAACCGACTAGACCACGAAACC TATTAATTTA chrXIII:372315-372714 + 31 1.45e-09 AAGCAGATGC CATAACCGACTAGACCACGAAACC AGGTTTTATT chrVII:73673-74149 + 18 1.45e-09 AAGCAGATGC CATAACCGACTAGACCACGAAACC ACTTAATTGA chrV:438502-438912 - 43 1.45e-09 AAGCAGATGC CATAACCGACTAGACCACGAAACC TAATTTGTTG chrXIII:420431-420857 + 44 1.45e-09 AAGCAGATGC CATAACCGACTAGACCACGAAACC TGTTATTTGT chrXI:308005-308401 + 41 1.45e-09 AAGCAGATGC CATAACCGACTAGACCACGAAACC ACTTAATTGT chrXII:687674-688154 + 45 1.45e-09 AAGCAGATGC CATAACCGACTAGACCACGAAACC TATTATTTAT chrIV:884166-884604 - 26 1.66e-09 AAGCACGAAG CTCTAACCACTGAGCTACACGAGC ATTTTCGAAA chrX:58928-59028 + 61 1.91e-09 TAGTGTGGCG CCTTACCAACTTGGCCATAGAAGC TTCTATTTTA chrXIV:560464-560982 + 69 1.91e-09 TAGTGTGGCG CCTTACCAACTTGGCCATAGAAGC CCGTTATT chrVIII:115970-116368 + 37 1.91e-09 TAGTGTGGCG CCTTACCAACTTGGCCATAGAAGC TCTAATAGTG chrIII:295292-295740 - 18 1.91e-09 TAGTGTGGCG CCTTACCAACTTGGCCATAGAAGC TTAATTGTAT chrVII:706917-707368 + 64 1.10e-08 GCAATCTGCT GCGCTACCACTGCGCCATACGAGC TTGATTTTCT chrXVI:775630-776026 + 35 1.10e-08 GCAATCTGCT GCGCTACCACTGCGCCATACGAGC TTTTGAATTA chrII:9386-9803 - 39 1.73e-08 AGTCTGCCGC CTTAGACCACTCGGCCAACCCTCC ACGAATTTTC chrXI:162274-162775 + 61 1.73e-08 GAAGTCAGAC GCGTTGCCATTACGCCACGCGAGC TAATATTTGT chrXIII:747735-748188 + 29 1.73e-08 GAAGTCAGAC GCGTTGCCATTACGCCACGCGAGC TAGTCATATG chrX:424346-424446 + 15 1.73e-08 AGTCTGCCGC CTTAGACCACTCGGCCAACCCTCC ATCTTATTTA chrVII:405278-405737 - 13 1.73e-08 GAAGTCAGAC GCGTTGCCATTACGCCACGCGAGC TACTGTTTGT chrIV:519553-519953 - 40 1.73e-08 AGTCTGCCGC CTTAGACCACTCGGCCAACCCTCC GTAAAATCAC chrXII:962834-963306 + 12 1.73e-08 AGTCTGCCGC CTTAGACCACTCGGCCAACCCTCC GTCGATAATA chrII:405667-406157 - 16 1.73e-08 GAAGTCAGAC GCGTTGCCATTACGCCACGCGAGC TACTATTTGT chrIV:568682-569179 - 2 1.73e-08 GAAGTCAGAC GCGTTGCCATTACGCCACGCGAGC T chrIII:142558-142969 + 35 1.93e-08 GCAACGTTGG ATTTTACCACTAAACCACTTGCGC TAGTAATCTT chrVII:845445-845903 - 25 1.93e-08 GCAACGTTGG ATTTTACCACTAAACCACTTGCGC TTGTTATTTA chrIV:992579-993047 - 69 1.93e-08 AACGTTGG ATTTTACCACTAAACCACTTGCGC TCACAATTGT chrXV:281887-282400 - 71 1.93e-08 CGTTGG ATTTTACCACTAAACCACTTGCGC GCTTTCATGT chrXIII:183729-184116 + 73 1.93e-08 GCAACGTTGG ATTTTACCACTAAACCACTTGCGC GATC chrVI:162034-162430 - 46 1.93e-08 GCAACGTTGG ATTTTACCACTAAACCACTTGCGC TTGTTTTCTT chrVII:930793-931219 + 44 1.93e-08 GCAACGTTGG ATTTTACCACTAAACCACTTGCGC TTACTGATTA chrXVI:860183-860575 - 50 1.93e-08 GCAACGTTGG ATTTTACCACTAAACCACTTGCGC TTGTTATTTA chrX:531631-531731 - 6 1.93e-08 GCAACGTTGG ATTTTACCACTAAACCACTTGCGC TCACT chrVII:857267-857666 + 52 2.15e-08 AATCAGGCGC CTTAGACCGCTCGGCCAAACAACC ACTTATTTGT chrIV:1461588-1462078 + 23 2.15e-08 AATCAGGCGC CTTAGACCGCTCGGCCAAACAACC ACTTATTTGT chrXV:228127-228552 - 42 3.29e-08 AGTCGCACGC CTTAACCAACTTGGCCATGGAGTC TAATATTTTA chrXIV:102533-102984 - 8 3.29e-08 AGTCGCACGC CTTAACCAACTTGGCCATGGAGTC TTATAAT chrXVI:810416-810922 - 57 3.29e-08 AGTCGCACGC CTTAACCAACTTGGCCATGGAGTC GCAAATAATG chrXII:975850-976264 + 26 3.29e-08 AGTCGCACGC CTTAACCAACTTGGCCATGGAGTC TTTTATTTCC chrV:435626-436043 + 17 6.66e-08 GAGTCATACG CGCTACCGATTGCGCCAACAAGGC TCTTATTGTT chrVI:226495-226935 + 72 6.66e-08 GAGTCATACG CGCTACCGATTGCGCCAACAAGGC ATTTT chrVIII:466762-467247 - 36 8.88e-08 CAAGTGCAAC GCTCTACCACTAAGCTAAGGAGGC TAAAAATACA chrIV:1256909-1257288 + 8 1.69e-07 GCATGAA TTCTAACCACTGAACCACTTTCGC TAAGAAGATC chrIII:123419-123812 + 60 2.01e-07 CTAAGCGAGA ATCATACCTCTAGACCACACGCCC TCCTTTGAAA chrXV:340114-340570 + 56 3.35e-07 TAGCCAGACG CCGTGACCATTGGGCCACGAGGAA CAGATCTTGA chrV:492191-492605 + 53 3.35e-07 TAGCCAGACG CCGTGACCATTGGGCCACGAGGAA TAGGATGTTC chrX:422694-422794 - 23 4.65e-07 GAGACTGACG CTCTTCCTACTGAGCTACTGAAGC ATACAAAGGA chrVII:779392-779843 - 49 5.03e-07 AAGGGTGGGA TGATAACCACTACACTAACCGCCC GGGGTTAACT chrXV:110771-111228 + 61 5.03e-07 AAGGGTGGGA TGATAACCACTACACTAACCGCCC GGGTTAATTG chrXII:448486-448930 + 40 5.89e-07 AAACCGAAAG TGATAACCACTACACTATAGGACC GGAACTTCTT chrIV:520748-521193 - 52 5.89e-07 AAACCGAAAG TGATAACCACTACACTATAGGACC CTAAAATGGA chrXVI:622399-622839 + 39 7.43e-07 CAGTCTGGCG CTCTCCCAACTGAGCTAAATCCGC ATATCAGAAT chrVIII:358283-358778 + 66 7.43e-07 CAGTCTGGCG CTCTCCCAACTGAGCTAAATCCGC TTACTATTTG chrXV:709962-710402 - 69 1.08e-06 AGCCCTGC GCGCTTCCACTGCGCCACGGCGCT GCTAATTCTT chrXVI:338699-339113 + 40 1.08e-06 TGAGCCCTGC GCGCTTCCACTGCGCCACGGCGCT GCTAAATCAT chrX:517666-517766 + 50 1.08e-06 TGAGCCCTGC GCGCTTCCACTGCGCCACGGCGCT TAACTTTTAT chrVII:115302-115738 - 18 1.25e-06 AAGCCGAACG CTCTACCAACTGAGCTAACAAGGA TGAGTTCTTC chrV:130966-131349 + 23 1.44e-06 AAACCGAAAG TGATAACCACTACACTATAAAACC TCTTAATTAT chrV:306483-306813 + 32 9.12e-06 AATGATATCT AGCTAACCATTATGCTACAGGAAC CTTTTTTGGA chrV:148515-148667 + 46 5.58e-05 AGATTCAAGT CGTTAAAAACTAAACCATATATAA AATCTATTGC chrV:138463-139051 + 52 3.37e-04 TATTCCTAAC CAGTAAATACCAGAACATACGGCA GATTATAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTWAMCCACTRSRCCAHRNRVSC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXI:219709-220131 4.7e-11 24_[-1]_52 chrXVI:856716-857109 4.7e-11 39_[-1]_37 chrIV:1305433-1305884 6.9e-11 21_[-1]_55 chrIV:980844-981270 6.9e-11 24_[+1]_52 chrIV:437536-437992 6.9e-11 57_[-1]_19 chrXIII:259035-259451 6.9e-11 22_[+1]_54 chrXVI:819291-819786 9.9e-11 40_[-1]_36 chrXIV:569753-570093 9.9e-11 43_[+1]_33 chrIX:183259-183710 9.9e-11 55_[+1]_21 chrIII:227700-228201 2e-10 41_[-1]_35 chrXVI:689341-689830 2e-10 29_[-1]_47 chrXII:214707-215151 3.2e-10 52_[+1]_24 chrVII:794175-794647 3.2e-10 55_[-1]_21 chrXII:731859-732284 3.8e-10 68_[-1]_8 chrX:617723-617823 3.8e-10 45_[-1]_31 chrVII:823261-823703 1.4e-09 49_[-1]_27 chrVIII:85179-85564 1.4e-09 26_[+1]_50 chrX:378171-378271 1.4e-09 32_[-1]_44 chrXIII:372315-372714 1.4e-09 30_[+1]_46 chrVII:73673-74149 1.4e-09 17_[+1]_59 chrV:438502-438912 1.4e-09 42_[-1]_34 chrXIII:420431-420857 1.4e-09 43_[+1]_33 chrXI:308005-308401 1.4e-09 40_[+1]_36 chrXII:687674-688154 1.4e-09 44_[+1]_32 chrIV:884166-884604 1.7e-09 25_[-1]_51 chrX:58928-59028 1.9e-09 60_[+1]_16 chrXIV:560464-560982 1.9e-09 68_[+1]_8 chrVIII:115970-116368 1.9e-09 36_[+1]_40 chrIII:295292-295740 1.9e-09 17_[-1]_59 chrVII:706917-707368 1.1e-08 63_[+1]_13 chrXVI:775630-776026 1.1e-08 34_[+1]_42 chrII:9386-9803 1.7e-08 38_[-1]_38 chrXI:162274-162775 1.7e-08 60_[+1]_16 chrXIII:747735-748188 1.7e-08 28_[+1]_48 chrX:424346-424446 1.7e-08 14_[+1]_62 chrVII:405278-405737 1.7e-08 12_[-1]_64 chrIV:519553-519953 1.7e-08 39_[-1]_37 chrXII:962834-963306 1.7e-08 11_[+1]_65 chrII:405667-406157 1.7e-08 15_[-1]_61 chrIV:568682-569179 1.7e-08 1_[-1]_75 chrIII:142558-142969 1.9e-08 34_[+1]_42 chrVII:845445-845903 1.9e-08 24_[-1]_52 chrIV:992579-993047 1.9e-08 68_[-1]_8 chrXV:281887-282400 1.9e-08 70_[-1]_6 chrXIII:183729-184116 1.9e-08 72_[+1]_4 chrVI:162034-162430 1.9e-08 45_[-1]_31 chrVII:930793-931219 1.9e-08 43_[+1]_33 chrXVI:860183-860575 1.9e-08 49_[-1]_27 chrX:531631-531731 1.9e-08 5_[-1]_71 chrVII:857267-857666 2.2e-08 51_[+1]_25 chrIV:1461588-1462078 2.2e-08 22_[+1]_54 chrXV:228127-228552 3.3e-08 41_[-1]_35 chrXIV:102533-102984 3.3e-08 7_[-1]_69 chrXVI:810416-810922 3.3e-08 56_[-1]_20 chrXII:975850-976264 3.3e-08 25_[+1]_51 chrV:435626-436043 6.7e-08 16_[+1]_60 chrVI:226495-226935 6.7e-08 71_[+1]_5 chrVIII:466762-467247 8.9e-08 35_[-1]_41 chrIV:1256909-1257288 1.7e-07 7_[+1]_69 chrIII:123419-123812 2e-07 59_[+1]_17 chrXV:340114-340570 3.4e-07 55_[+1]_21 chrV:492191-492605 3.4e-07 52_[+1]_24 chrX:422694-422794 4.6e-07 22_[-1]_54 chrVII:779392-779843 5e-07 48_[-1]_28 chrXV:110771-111228 5e-07 60_[+1]_16 chrXII:448486-448930 5.9e-07 39_[+1]_37 chrIV:520748-521193 5.9e-07 51_[-1]_25 chrXVI:622399-622839 7.4e-07 38_[+1]_38 chrVIII:358283-358778 7.4e-07 65_[+1]_11 chrXV:709962-710402 1.1e-06 68_[-1]_8 chrXVI:338699-339113 1.1e-06 39_[+1]_37 chrX:517666-517766 1.1e-06 49_[+1]_27 chrVII:115302-115738 1.2e-06 17_[-1]_59 chrV:130966-131349 1.4e-06 22_[+1]_54 chrV:306483-306813 9.1e-06 31_[+1]_45 chrV:148515-148667 5.6e-05 45_[+1]_31 chrV:138463-139051 0.00034 51_[+1]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTWAMCCACTRSRCCAHRNRVSC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYTWAMCCACTRSRCCAHRNRVSC width=24 seqs=77 chrXI:219709-220131 ( 25) CGCTACCGACTACGCCACACGCCC 1 chrXVI:856716-857109 ( 40) CGCTACCGACTACGCCACACGCCC 1 chrIV:1305433-1305884 ( 22) CCTTAACCACTCGGCCAAGTTGCC 1 chrIV:980844-981270 ( 25) CCTTAACCACTCGGCCAAGTTGCC 1 chrIV:437536-437992 ( 58) CCTTAACCACTCGGCCAAGTTGCC 1 chrXIII:259035-259451 ( 23) CCTTAACCACTCGGCCAAGTTGCC 1 chrXVI:819291-819786 ( 41) CTTAACCAACTGGGCCAAGAGACC 1 chrXIV:569753-570093 ( 44) CTTAACCAACTGGGCCAAGAGACC 1 chrIX:183259-183710 ( 56) CTTAACCAACTGGGCCAAGAGACC 1 chrIII:227700-228201 ( 42) CCTTAACCACTCGGCCATAGTGCC 1 chrXVI:689341-689830 ( 30) CCTTAACCACTCGGCCATAGTGCC 1 chrXII:214707-215151 ( 53) CGCTACCAACTGCGCCATGTGCCC 1 chrVII:794175-794647 ( 56) CGCTACCAACTGCGCCATGTGCCC 1 chrXII:731859-732284 ( 69) CTTAAACCACTCGGCCAAACTCCC 1 chrX:617723-617823 ( 46) CTTAAACCACTCGGCCAAACTCCC 1 chrVII:823261-823703 ( 50) CATAACCGACTAGACCACGAAACC 1 chrVIII:85179-85564 ( 27) CATAACCGACTAGACCACGAAACC 1 chrX:378171-378271 ( 33) CATAACCGACTAGACCACGAAACC 1 chrXIII:372315-372714 ( 31) CATAACCGACTAGACCACGAAACC 1 chrVII:73673-74149 ( 18) CATAACCGACTAGACCACGAAACC 1 chrV:438502-438912 ( 43) CATAACCGACTAGACCACGAAACC 1 chrXIII:420431-420857 ( 44) CATAACCGACTAGACCACGAAACC 1 chrXI:308005-308401 ( 41) CATAACCGACTAGACCACGAAACC 1 chrXII:687674-688154 ( 45) CATAACCGACTAGACCACGAAACC 1 chrIV:884166-884604 ( 26) CTCTAACCACTGAGCTACACGAGC 1 chrX:58928-59028 ( 61) CCTTACCAACTTGGCCATAGAAGC 1 chrXIV:560464-560982 ( 69) CCTTACCAACTTGGCCATAGAAGC 1 chrVIII:115970-116368 ( 37) CCTTACCAACTTGGCCATAGAAGC 1 chrIII:295292-295740 ( 18) CCTTACCAACTTGGCCATAGAAGC 1 chrVII:706917-707368 ( 64) GCGCTACCACTGCGCCATACGAGC 1 chrXVI:775630-776026 ( 35) GCGCTACCACTGCGCCATACGAGC 1 chrII:9386-9803 ( 39) CTTAGACCACTCGGCCAACCCTCC 1 chrXI:162274-162775 ( 61) GCGTTGCCATTACGCCACGCGAGC 1 chrXIII:747735-748188 ( 29) GCGTTGCCATTACGCCACGCGAGC 1 chrX:424346-424446 ( 15) CTTAGACCACTCGGCCAACCCTCC 1 chrVII:405278-405737 ( 13) GCGTTGCCATTACGCCACGCGAGC 1 chrIV:519553-519953 ( 40) CTTAGACCACTCGGCCAACCCTCC 1 chrXII:962834-963306 ( 12) CTTAGACCACTCGGCCAACCCTCC 1 chrII:405667-406157 ( 16) GCGTTGCCATTACGCCACGCGAGC 1 chrIV:568682-569179 ( 2) GCGTTGCCATTACGCCACGCGAGC 1 chrIII:142558-142969 ( 35) ATTTTACCACTAAACCACTTGCGC 1 chrVII:845445-845903 ( 25) ATTTTACCACTAAACCACTTGCGC 1 chrIV:992579-993047 ( 69) ATTTTACCACTAAACCACTTGCGC 1 chrXV:281887-282400 ( 71) ATTTTACCACTAAACCACTTGCGC 1 chrXIII:183729-184116 ( 73) ATTTTACCACTAAACCACTTGCGC 1 chrVI:162034-162430 ( 46) ATTTTACCACTAAACCACTTGCGC 1 chrVII:930793-931219 ( 44) ATTTTACCACTAAACCACTTGCGC 1 chrXVI:860183-860575 ( 50) ATTTTACCACTAAACCACTTGCGC 1 chrX:531631-531731 ( 6) ATTTTACCACTAAACCACTTGCGC 1 chrVII:857267-857666 ( 52) CTTAGACCGCTCGGCCAAACAACC 1 chrIV:1461588-1462078 ( 23) CTTAGACCGCTCGGCCAAACAACC 1 chrXV:228127-228552 ( 42) CTTAACCAACTTGGCCATGGAGTC 1 chrXIV:102533-102984 ( 8) CTTAACCAACTTGGCCATGGAGTC 1 chrXVI:810416-810922 ( 57) CTTAACCAACTTGGCCATGGAGTC 1 chrXII:975850-976264 ( 26) CTTAACCAACTTGGCCATGGAGTC 1 chrV:435626-436043 ( 17) CGCTACCGATTGCGCCAACAAGGC 1 chrVI:226495-226935 ( 72) CGCTACCGATTGCGCCAACAAGGC 1 chrVIII:466762-467247 ( 36) GCTCTACCACTAAGCTAAGGAGGC 1 chrIV:1256909-1257288 ( 8) TTCTAACCACTGAACCACTTTCGC 1 chrIII:123419-123812 ( 60) ATCATACCTCTAGACCACACGCCC 1 chrXV:340114-340570 ( 56) CCGTGACCATTGGGCCACGAGGAA 1 chrV:492191-492605 ( 53) CCGTGACCATTGGGCCACGAGGAA 1 chrX:422694-422794 ( 23) CTCTTCCTACTGAGCTACTGAAGC 1 chrVII:779392-779843 ( 49) TGATAACCACTACACTAACCGCCC 1 chrXV:110771-111228 ( 61) TGATAACCACTACACTAACCGCCC 1 chrXII:448486-448930 ( 40) TGATAACCACTACACTATAGGACC 1 chrIV:520748-521193 ( 52) TGATAACCACTACACTATAGGACC 1 chrXVI:622399-622839 ( 39) CTCTCCCAACTGAGCTAAATCCGC 1 chrVIII:358283-358778 ( 66) CTCTCCCAACTGAGCTAAATCCGC 1 chrXV:709962-710402 ( 69) GCGCTTCCACTGCGCCACGGCGCT 1 chrXVI:338699-339113 ( 40) GCGCTTCCACTGCGCCACGGCGCT 1 chrX:517666-517766 ( 50) GCGCTTCCACTGCGCCACGGCGCT 1 chrVII:115302-115738 ( 18) CTCTACCAACTGAGCTAACAAGGA 1 chrV:130966-131349 ( 23) TGATAACCACTACACTATAAAACC 1 chrV:306483-306813 ( 32) AGCTAACCATTATGCTACAGGAAC 1 chrV:148515-148667 ( 46) CGTTAAAAACTAAACCATATATAA 1 chrV:138463-139051 ( 52) CAGTAAATACCAGAACATACGGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTWAMCCACTRSRCCAHRNRVSC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 24 n= 42196 bayes= 6.6189 E= 1.8e-190 -116 181 -35 -203 -129 72 -11 34 -229 0 -11 88 3 -122 -1291 91 88 -281 -81 -16 67 110 -148 -303 -361 242 -1291 -1291 -53 169 -11 -361 159 -1291 -281 -461 -1291 226 -1291 -129 -1291 -380 -1291 163 51 0 52 -161 -53 59 144 -461 14 -1291 184 -1291 -461 244 -1291 -1291 -1291 222 -1291 -103 165 -1291 -1291 -1291 -9 132 -1291 -37 -3 -64 124 -116 -45 65 36 -37 9 -64 124 -144 34 59 52 -229 -261 152 105 -261 -229 230 -1291 -303 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTWAMCCACTRSRCCAHRNRVSC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 24 nsites= 77 E= 1.8e-190 0.142857 0.636364 0.142857 0.077922 0.129870 0.298701 0.168831 0.402597 0.064935 0.181818 0.168831 0.584416 0.324675 0.077922 0.000000 0.597403 0.584416 0.025974 0.103896 0.285714 0.506494 0.389610 0.064935 0.038961 0.025974 0.974026 0.000000 0.000000 0.220779 0.584416 0.168831 0.025974 0.961039 0.000000 0.025974 0.012987 0.000000 0.870130 0.000000 0.129870 0.000000 0.012987 0.000000 0.987013 0.454545 0.181818 0.259740 0.103896 0.220779 0.272727 0.493506 0.012987 0.350649 0.000000 0.649351 0.000000 0.012987 0.987013 0.000000 0.000000 0.000000 0.844156 0.000000 0.155844 1.000000 0.000000 0.000000 0.000000 0.298701 0.454545 0.000000 0.246753 0.311688 0.116883 0.428571 0.142857 0.233766 0.285714 0.233766 0.246753 0.337662 0.116883 0.428571 0.116883 0.402597 0.272727 0.259740 0.064935 0.051948 0.519481 0.376623 0.051948 0.064935 0.896104 0.000000 0.038961 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTWAMCCACTRSRCCAHRNRVSC MEME-1 regular expression -------------------------------------------------------------------------------- C[TC]T[TA][AT][AC]C[CA]ACT[AG][GCA][GA]CCA[CAT][GA][CTAG][GA][ACG][CG]C -------------------------------------------------------------------------------- Time 292.53 secs. ******************************************************************************** ******************************************************************************** MOTIF TAAYCNKRAGRTCMBSGGTTCGATYCC MEME-2 width = 27 sites = 59 llr = 1151 E-value = 7.8e-221 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAAYCNKRAGRTCMBSGGTTCGATYCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 177::3247242:3112::::3a2::: pos.-specific C 221372:111:17533::::a::24a7 probability G 11123354376::1358a:::7:2::: matrix T 6:15:231:::73:31::aa:::56:3 bits 2.5 * * * 2.2 * * * 2.0 * * * 1.7 * ** * * Relative 1.5 * * ****** * Entropy 1.2 * * * ******* ** (28.1 bits) 1.0 * ** * ******* ** 0.7 * * *** ** ******** *** 0.5 ***** ******** ******** *** 0.2 ***** ***************** *** 0.0 --------------------------- Multilevel TAATCGGGAGGTCCCGGGTTCGATTCC consensus CC CGATAG AATATC A CC T sequence T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAYCNKRAGRTCMBSGGTTCGATYCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------------- chrIV:667779-668275 - 41 8.83e-13 ACCGTGCTAA TAACGCGGGGATCAGCGGTTCGATCCC GCTAGAGACC chrXVI:880061-880561 - 46 8.83e-13 ACCGTGCTAA TAACGCGGGGATCAGCGGTTCGATCCC GCTAGAGACC chrXIV:569753-570093 - 5 8.83e-13 ACCGTGCTAA TAACGCGGGGATCAGCGGTTCGATCCC GCTA chrIX:183259-183710 - 17 8.83e-13 ACCGTGCTAA TAACGCGGGGATCAGCGGTTCGATCCC GCTAGAGACC chrXI:162274-162775 - 24 8.24e-12 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCC CATCGTGAGT chrVII:405278-405737 + 47 8.24e-12 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCC CATCGTGAGT chrVII:736152-736666 + 15 8.24e-12 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCC CATCGTGAGT chrII:405667-406157 + 50 8.24e-12 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCC CATCGTGAGT chrIV:568682-569179 + 36 8.24e-12 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCC CATCGTGAGT chrIV:1016913-1017490 - 67 9.53e-12 CACGTTC TCACCGTGGAGACCGGGGTTCGACTCC CCGCTTCGGA chrXVI:581877-582393 + 12 9.53e-12 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCC CCTACAGGGC chrV:354699-355303 + 17 9.53e-12 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCC CCGTATCGGA chrVII:876204-876707 + 24 9.53e-12 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCC CCTACAGGGC chrV:135156-135693 - 62 9.53e-12 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCC CCTACAGGGC chrVII:328322-328972 + 20 9.53e-12 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCC CCGTATCGGA chrVI:226495-226935 - 34 9.53e-12 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCC CCTACAGGGC chrXVI:209903-210478 - 63 9.53e-12 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCC CCGTATCGGA chrVII:845445-845903 + 58 1.46e-11 TCCAACGTTG CCATCGTTGGGCCCCCGGTTCGATTCC GGGCTTGCGC chrXIII:183729-184116 - 37 1.46e-11 TCCAACGTTG CCATCGTTGGGCCCCCGGTTCGATTCC GGGCTTGCGC chrVII:930793-931219 - 8 1.46e-11 TCCAACGTTG CCATCGTTGGGCCCCCGGTTCGATTCC GGGCTTG chrX:531631-531731 + 39 1.46e-11 TCCAACGTTG CCATCGTTGGGCCCCCGGTTCGATTCC GGGCTTGCGC chrXII:214707-215151 - 15 1.92e-11 GCTTCCCTTG CAAGGAAGAGGTCATCGGTTCGATTCC GGTTGCGTCC chrIII:123419-123812 - 23 2.20e-11 TCTCGCTTAG GGTGCGGGAGGTCCCGGGTTCGAGTCC CGGCTCGCCC chrX:58928-59028 - 23 7.01e-11 GCCACACTAG TAATGTGGAGATCATCGGTTCAAATCC GATTGGAAGC chrXIV:560464-560982 - 31 7.01e-11 GCCACACTAG TAATGTGGAGATCATCGGTTCAAATCC GATTGGAAGC chrXIV:104616-105156 + 4 7.01e-11 TAG TAATGTGGAGATCATCGGTTCAAATCC GATTGGAAGC chrIII:295292-295740 + 53 7.01e-11 GCCACACTAG TAATGTGGAGATCATCGGTTCAAATCC GATTGGAAGC chrXV:300860-301465 + 49 1.80e-10 GGGGACAAAG CATGCGAGAGGCCCTGGGTTCAATTCC CAGCTCGCCC chrXV:980468-981045 + 44 1.80e-10 AGGAACAAAG CATGCGAGAGGCCCTGGGTTCAATTCC CAGCTCGCCC chrXIV:567918-568449 + 47 1.80e-10 GAAGACAAAG CATGCGAGAGGCCCTGGGTTCAATTCC CAGCTCGCCC chrXII:448486-448930 - 3 2.02e-10 CTTTCGGTTT TGATCCGGACAACCCCGGTTCGAATCC GG chrXV:340114-340570 - 18 7.96e-10 GTCTGGCTAC GAACCAGAAGATTCCAGGTTCAAGTCC TGGCGGGGAA chrIV:619757-620201 - 51 7.96e-10 GTCTGGCTAC GAACCAGAAGATTCCAGGTTCAAGTCC TGGCGGGGAA chrV:492191-492605 - 15 7.96e-10 GTCTGGCTAC GAACCAGAAGATTCCAGGTTCAAGTCC TGGCGGGGAA chrXII:374160-374699 + 11 7.96e-10 GTCTGGCTAC GAACCAGAAGATTCCAGGTTCAAGTCC TGGCGGGGAA chrXV:976196-976803 + 7 1.07e-09 GTCTCA TAATCTGAAGGTCGAGAGTTCGAACCT CCCCTGGAGC chrX:422694-422794 + 58 1.07e-09 GTCAGTCTCA TAATCTGAAGGTCGAGAGTTCGAACCT CCCCTGGAGC chrIV:1175636-1176160 + 16 1.07e-09 GTCAGTCTCA TAATCTGAAGGTCGAGAGTTCGAACCT CCCCTGGAGC chrXI:219709-220131 + 60 1.42e-09 GCTCCCTTAG CATGGGAGAGGTCTCCGGTTCGATTCC GGACTCGTCC chrX:378171-378271 + 69 1.56e-09 ATCTGCTTAA CACGCAGAACGTCCCCAGTTCGATCCT GGGCG chrXIII:420431-420857 - 5 1.56e-09 ATCTGCTTAA CACGCAGAACGTCCCCAGTTCGATCCT GGGC chrXII:687674-688154 - 6 1.56e-09 ATCTGCTTAA CACGCAGAACGTCCCCAGTTCGATCCT GGGCG chrIV:488510-489088 - 59 1.71e-09 GTCGCCTTTA CACGGCGAAGATCCCGAGTTCGAACCT CGGTTGGATC chrXV:110771-111228 - 24 2.95e-09 TCCCACCCTT CCAAGGTGGGGACACGGGTTCGATTCT CGTACCGCTC chrXIV:102533-102984 + 44 8.01e-09 GTGCGACTGT TAATCGCAAGATCGTGAGTTCAACCCT CACTGGGGTC chrVIII:466762-467247 + 70 1.01e-08 GTTGCACTTG TAATGCAAAGGTCGCTAGTTCAATTCT GGCA chrXVI:744118-744555 + 32 1.59e-08 GTTGCACTTG TAATGCAAAGGTCGTTAGTTCAATTCT GACAGGTGGC chrXVI:338699-339113 - 3 1.71e-08 GCAGGGCTCA TAACCCTGATGTCCTCGGATCGAAACC GA chrX:517666-517766 - 13 1.71e-08 GCAGGGCTCA TAACCCTGATGTCCTCGGATCGAAACC GAGCGGCGCT chrX:354045-354145 + 42 2.12e-08 TACCACTACG AAATCTTGAGATCGGGCGTTCGACTCG CCCCCGGGAG chrIV:946114-946622 + 45 2.12e-08 TATCACTACG AAATCTTGAGATCGGGCGTTCGACTCG CCCCCGGGAG chrVIII:358283-358778 - 9 2.62e-08 TTCGGTCAAG TTATCTGGAGGTCCTGTGTTCGATCCA CAGAATTC chrX:541307-541407 + 53 3.67e-08 TGGGCGCTTG TCGCGTGCCAGATCGGGGTTCAATTCC CCGTCGCGGA chrIX:324038-324557 - 67 3.67e-08 GCGCTTG TCGCGTGCCAGATCGGGGTTCAATTCC CCGTCGCGGA chrXIII:463336-463938 + 1 3.67e-08 . TCGCGTGCCAGATCGGGGTTCAATTCC CCGTCGCGGA chrV:434361-434797 - 23 4.19e-08 CACATCGTTG TGGCCGATGAAACCCTGGTTCGATTCT AGGAGATGGC chrV:207143-207621 + 59 4.19e-08 CACATCGTTG TGGCCGATGAAACCCTGGTTCGATTCT AGGAGATGGC chrXIII:362877-363411 + 4 4.19e-08 TTG TGGCCGATGAAACCCTGGTTCGATTCT AGGAGATGGC chrVII:706917-707368 - 27 5.76e-08 AGCAGATTGC AAATCTGTTGGTCCTTAGTTCGATCCT GAGTGCGAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAYCNKRAGRTCMBSGGTTCGATYCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:667779-668275 8.8e-13 40_[-2]_33 chrXVI:880061-880561 8.8e-13 45_[-2]_28 chrXIV:569753-570093 8.8e-13 4_[-2]_69 chrIX:183259-183710 8.8e-13 16_[-2]_57 chrXI:162274-162775 8.2e-12 23_[-2]_50 chrVII:405278-405737 8.2e-12 46_[+2]_27 chrVII:736152-736666 8.2e-12 14_[+2]_59 chrII:405667-406157 8.2e-12 49_[+2]_24 chrIV:568682-569179 8.2e-12 35_[+2]_38 chrIV:1016913-1017490 9.5e-12 66_[-2]_7 chrXVI:581877-582393 9.5e-12 11_[+2]_62 chrV:354699-355303 9.5e-12 16_[+2]_57 chrVII:876204-876707 9.5e-12 23_[+2]_50 chrV:135156-135693 9.5e-12 61_[-2]_12 chrVII:328322-328972 9.5e-12 19_[+2]_54 chrVI:226495-226935 9.5e-12 33_[-2]_40 chrXVI:209903-210478 9.5e-12 62_[-2]_11 chrVII:845445-845903 1.5e-11 57_[+2]_16 chrXIII:183729-184116 1.5e-11 36_[-2]_37 chrVII:930793-931219 1.5e-11 7_[-2]_66 chrX:531631-531731 1.5e-11 38_[+2]_35 chrXII:214707-215151 1.9e-11 14_[-2]_59 chrIII:123419-123812 2.2e-11 22_[-2]_51 chrX:58928-59028 7e-11 22_[-2]_51 chrXIV:560464-560982 7e-11 30_[-2]_43 chrXIV:104616-105156 7e-11 3_[+2]_70 chrIII:295292-295740 7e-11 52_[+2]_21 chrXV:300860-301465 1.8e-10 48_[+2]_25 chrXV:980468-981045 1.8e-10 43_[+2]_30 chrXIV:567918-568449 1.8e-10 46_[+2]_27 chrXII:448486-448930 2e-10 2_[-2]_71 chrXV:340114-340570 8e-10 17_[-2]_56 chrIV:619757-620201 8e-10 50_[-2]_23 chrV:492191-492605 8e-10 14_[-2]_59 chrXII:374160-374699 8e-10 10_[+2]_63 chrXV:976196-976803 1.1e-09 6_[+2]_67 chrX:422694-422794 1.1e-09 57_[+2]_16 chrIV:1175636-1176160 1.1e-09 15_[+2]_58 chrXI:219709-220131 1.4e-09 59_[+2]_14 chrX:378171-378271 1.6e-09 68_[+2]_5 chrXIII:420431-420857 1.6e-09 4_[-2]_69 chrXII:687674-688154 1.6e-09 5_[-2]_68 chrIV:488510-489088 1.7e-09 58_[-2]_15 chrXV:110771-111228 2.9e-09 23_[-2]_50 chrXIV:102533-102984 8e-09 43_[+2]_30 chrVIII:466762-467247 1e-08 69_[+2]_4 chrXVI:744118-744555 1.6e-08 31_[+2]_42 chrXVI:338699-339113 1.7e-08 2_[-2]_71 chrX:517666-517766 1.7e-08 12_[-2]_61 chrX:354045-354145 2.1e-08 41_[+2]_32 chrIV:946114-946622 2.1e-08 44_[+2]_29 chrVIII:358283-358778 2.6e-08 8_[-2]_65 chrX:541307-541407 3.7e-08 52_[+2]_21 chrIX:324038-324557 3.7e-08 66_[-2]_7 chrXIII:463336-463938 3.7e-08 [+2]_73 chrV:434361-434797 4.2e-08 22_[-2]_51 chrV:207143-207621 4.2e-08 58_[+2]_15 chrXIII:362877-363411 4.2e-08 3_[+2]_70 chrVII:706917-707368 5.8e-08 26_[-2]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAYCNKRAGRTCMBSGGTTCGATYCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAAYCNKRAGRTCMBSGGTTCGATYCC width=27 seqs=59 chrIV:667779-668275 ( 41) TAACGCGGGGATCAGCGGTTCGATCCC 1 chrXVI:880061-880561 ( 46) TAACGCGGGGATCAGCGGTTCGATCCC 1 chrXIV:569753-570093 ( 5) TAACGCGGGGATCAGCGGTTCGATCCC 1 chrIX:183259-183710 ( 17) TAACGCGGGGATCAGCGGTTCGATCCC 1 chrXI:162274-162775 ( 24) TAATCAGAAGATTATGGGTTCGACCCC 1 chrVII:405278-405737 ( 47) TAATCAGAAGATTATGGGTTCGACCCC 1 chrVII:736152-736666 ( 15) TAATCAGAAGATTATGGGTTCGACCCC 1 chrII:405667-406157 ( 50) TAATCAGAAGATTATGGGTTCGACCCC 1 chrIV:568682-569179 ( 36) TAATCAGAAGATTATGGGTTCGACCCC 1 chrIV:1016913-1017490 ( 67) TCACCGTGGAGACCGGGGTTCGACTCC 1 chrXVI:581877-582393 ( 12) TAATCATAAGGTTAGGGGTTCGAGCCC 1 chrV:354699-355303 ( 17) TCACCGTGGAGACCGGGGTTCGACTCC 1 chrVII:876204-876707 ( 24) TAATCATAAGGTTAGGGGTTCGAGCCC 1 chrV:135156-135693 ( 62) TAATCATAAGGTTAGGGGTTCGAGCCC 1 chrVII:328322-328972 ( 20) TCACCGTGGAGACCGGGGTTCGACTCC 1 chrVI:226495-226935 ( 34) TAATCATAAGGTTAGGGGTTCGAGCCC 1 chrXVI:209903-210478 ( 63) TCACCGTGGAGACCGGGGTTCGACTCC 1 chrVII:845445-845903 ( 58) CCATCGTTGGGCCCCCGGTTCGATTCC 1 chrXIII:183729-184116 ( 37) CCATCGTTGGGCCCCCGGTTCGATTCC 1 chrVII:930793-931219 ( 8) CCATCGTTGGGCCCCCGGTTCGATTCC 1 chrX:531631-531731 ( 39) CCATCGTTGGGCCCCCGGTTCGATTCC 1 chrXII:214707-215151 ( 15) CAAGGAAGAGGTCATCGGTTCGATTCC 1 chrIII:123419-123812 ( 23) GGTGCGGGAGGTCCCGGGTTCGAGTCC 1 chrX:58928-59028 ( 23) TAATGTGGAGATCATCGGTTCAAATCC 1 chrXIV:560464-560982 ( 31) TAATGTGGAGATCATCGGTTCAAATCC 1 chrXIV:104616-105156 ( 4) TAATGTGGAGATCATCGGTTCAAATCC 1 chrIII:295292-295740 ( 53) TAATGTGGAGATCATCGGTTCAAATCC 1 chrXV:300860-301465 ( 49) CATGCGAGAGGCCCTGGGTTCAATTCC 1 chrXV:980468-981045 ( 44) CATGCGAGAGGCCCTGGGTTCAATTCC 1 chrXIV:567918-568449 ( 47) CATGCGAGAGGCCCTGGGTTCAATTCC 1 chrXII:448486-448930 ( 3) TGATCCGGACAACCCCGGTTCGAATCC 1 chrXV:340114-340570 ( 18) GAACCAGAAGATTCCAGGTTCAAGTCC 1 chrIV:619757-620201 ( 51) GAACCAGAAGATTCCAGGTTCAAGTCC 1 chrV:492191-492605 ( 15) GAACCAGAAGATTCCAGGTTCAAGTCC 1 chrXII:374160-374699 ( 11) GAACCAGAAGATTCCAGGTTCAAGTCC 1 chrXV:976196-976803 ( 7) TAATCTGAAGGTCGAGAGTTCGAACCT 1 chrX:422694-422794 ( 58) TAATCTGAAGGTCGAGAGTTCGAACCT 1 chrIV:1175636-1176160 ( 16) TAATCTGAAGGTCGAGAGTTCGAACCT 1 chrXI:219709-220131 ( 60) CATGGGAGAGGTCTCCGGTTCGATTCC 1 chrX:378171-378271 ( 69) CACGCAGAACGTCCCCAGTTCGATCCT 1 chrXIII:420431-420857 ( 5) CACGCAGAACGTCCCCAGTTCGATCCT 1 chrXII:687674-688154 ( 6) CACGCAGAACGTCCCCAGTTCGATCCT 1 chrIV:488510-489088 ( 59) CACGGCGAAGATCCCGAGTTCGAACCT 1 chrXV:110771-111228 ( 24) CCAAGGTGGGGACACGGGTTCGATTCT 1 chrXIV:102533-102984 ( 44) TAATCGCAAGATCGTGAGTTCAACCCT 1 chrVIII:466762-467247 ( 70) TAATGCAAAGGTCGCTAGTTCAATTCT 1 chrXVI:744118-744555 ( 32) TAATGCAAAGGTCGTTAGTTCAATTCT 1 chrXVI:338699-339113 ( 3) TAACCCTGATGTCCTCGGATCGAAACC 1 chrX:517666-517766 ( 13) TAACCCTGATGTCCTCGGATCGAAACC 1 chrX:354045-354145 ( 42) AAATCTTGAGATCGGGCGTTCGACTCG 1 chrIV:946114-946622 ( 45) AAATCTTGAGATCGGGCGTTCGACTCG 1 chrVIII:358283-358778 ( 9) TTATCTGGAGGTCCTGTGTTCGATCCA 1 chrX:541307-541407 ( 53) TCGCGTGCCAGATCGGGGTTCAATTCC 1 chrIX:324038-324557 ( 67) TCGCGTGCCAGATCGGGGTTCAATTCC 1 chrXIII:463336-463938 ( 1) TCGCGTGCCAGATCGGGGTTCAATTCC 1 chrV:434361-434797 ( 23) TGGCCGATGAAACCCTGGTTCGATTCT 1 chrV:207143-207621 ( 59) TGGCCGATGAAACCCTGGTTCGATTCT 1 chrXIII:362877-363411 ( 4) TGGCCGATGAAACCCTGGTTCGATTCT 1 chrVII:706917-707368 ( 27) AAATCTGTTGGTCCTTAGTTCGATCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAYCNKRAGRTCMBSGGTTCGATYCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 27 n= 40552 bayes= 10.0812 E= 7.8e-221 -264 39 -110 98 113 16 -110 -423 123 -142 -84 -191 -423 90 -10 58 -1253 197 67 -1253 -14 -10 75 -42 -91 -342 153 -14 29 -184 122 -123 105 -184 58 -423 -91 -142 200 -323 41 -1253 167 -1253 -65 -61 -1253 109 -1253 200 -1253 -23 2 153 -42 -423 -264 90 67 2 -223 90 144 -165 -77 -242 207 -423 -1253 -1253 246 -1253 -323 -1253 -1253 160 -1253 -1253 -1253 165 -1253 246 -1253 -1253 -14 -1253 197 -1253 165 -1253 -1253 -1253 -77 16 -25 52 -323 110 -1253 86 -1253 246 -1253 -1253 -423 194 -242 -32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAYCNKRAGRTCMBSGGTTCGATYCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 27 nsites= 59 E= 7.8e-221 0.050847 0.237288 0.084746 0.627119 0.694915 0.203390 0.084746 0.016949 0.745763 0.067797 0.101695 0.084746 0.016949 0.338983 0.169492 0.474576 0.000000 0.711864 0.288136 0.000000 0.288136 0.169492 0.305085 0.237288 0.169492 0.016949 0.525424 0.288136 0.389831 0.050847 0.423729 0.135593 0.661017 0.050847 0.271186 0.016949 0.169492 0.067797 0.728814 0.033898 0.423729 0.000000 0.576271 0.000000 0.203390 0.118644 0.000000 0.677966 0.000000 0.728814 0.000000 0.271186 0.322034 0.525424 0.135593 0.016949 0.050847 0.338983 0.288136 0.322034 0.067797 0.338983 0.491525 0.101695 0.186441 0.033898 0.762712 0.016949 0.000000 0.000000 1.000000 0.000000 0.033898 0.000000 0.000000 0.966102 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.288136 0.000000 0.711864 0.000000 1.000000 0.000000 0.000000 0.000000 0.186441 0.203390 0.152542 0.457627 0.033898 0.389831 0.000000 0.576271 0.000000 1.000000 0.000000 0.000000 0.016949 0.694915 0.033898 0.254237 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAYCNKRAGRTCMBSGGTTCGATYCC MEME-2 regular expression -------------------------------------------------------------------------------- [TC][AC]A[TC][CG][GAT][GT][GA][AG]G[GA][TA][CT][CA][CTG][GC]GGTTC[GA]A[TC][TC]C[CT] -------------------------------------------------------------------------------- Time 555.57 secs. ******************************************************************************** ******************************************************************************** MOTIF YACAYCCRYACATH MEME-3 width = 14 sites = 57 llr = 702 E-value = 3.8e-064 ******************************************************************************** -------------------------------------------------------------------------------- Motif YACAYCCRYACATH MEME-3 Description -------------------------------------------------------------------------------- Simplified A 27:a:1:5:9:8:3 pos.-specific C 41a:699:4:a235 probability G 12:::::4:1:::: matrix T 4:::4:1:5:::73 bits 2.5 * 2.2 * * * 2.0 * ** * 1.7 * ** * Relative 1.5 ** ** * Entropy 1.2 ***** *** (17.8 bits) 1.0 ***** **** 0.7 *********** 0.5 ************* 0.2 ************** 0.0 -------------- Multilevel TACACCCATACATC consensus C T GC CA sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YACAYCCRYACATH MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------- chrXIV:6561-6862 + 3 6.28e-09 CC CACACCCACACACC CACACCCACA chrVIII:562233-562629 - 85 6.28e-09 CC CACACCCACACACC ACACCCACAC chrXI:666440-666804 - 40 6.28e-09 ACACCCACAC CACACCCACACACC CACAACCCTA chrXII:11047-11524 + 33 6.28e-09 CCACACACAC CACACCCACACACC ACACCCACAC chrV:6166-6554 + 38 6.28e-09 CACCCACACC CACACCCACACACC ATGCTCACCT chrXIII:5284-5803 + 81 6.28e-09 ACCCACACAC CACACCCACACACC CTAACA chrXII:5438-5922 + 35 6.28e-09 ATATATACAC CACACCCACACACC ACACCCACAC chrVI:4429-4997 + 41 6.28e-09 CCACACACAC CACACCCACACACC CACACCCACA chrXIII:732035-732397 + 39 3.66e-08 CAAGACATAA TACATCCGCACATC GCGCATGTGT chrIV:538980-539191 + 69 7.54e-08 CATGAATTAT CACACCCACACCCC TCATTCAATC chrXII:932087-932487 - 38 1.02e-07 TTACATAGTA TACATCCGTACATC CGTACATCCG chrXII:710644-710881 + 20 1.02e-07 AAGCAGGAAT CACACCCACGCATC TCATTTTGCG chrVI:95517-95828 - 14 1.27e-07 CAATCAGTCA TGCACCCACACACC GGACTGCGTA chrIX:254280-254497 - 20 2.60e-07 GGCGAGCTTC CGCACCCACACATT CTAATTGCCG chrXI:431330-431625 + 66 2.60e-07 ACAGCGCAAA TACACCCATACACT ATTTTTACAT chrII:477058-477422 + 43 3.76e-07 ACATTCATGT TGCACCCACACATT TATACACCCA chrX:75360-75460 - 33 3.76e-07 AATTCCTCTA TACATCCACACCTC ACTATTTGAA chrIX:68221-68482 + 48 4.54e-07 TTGAGTTTAT TACATCCGTACATT ACTAAGATGT chrXV:678845-679159 - 58 4.54e-07 TTTGGGACCA TACATCCGTACATA TTGTGGACCC chrXIII:225369-225711 + 54 4.54e-07 ATCCGTGCAT TACATCCGTACATT CTATTTTTTA chrXII:241619-241997 + 48 4.54e-07 TTTCCCTTTT TACATCCGTACATA TAAAATGTAA chrIV:229535-229741 + 65 4.54e-07 TCTTACACAA AACATCCGTACATC AGAAGGATTA chrIV:1401262-1401569 + 67 5.10e-07 CCAATCATTT TCCACCCACACATA TATTACCCTT chrIII:163464-163873 - 29 5.10e-07 GTTAAATTAC CGCACCCACGCACC CAACCGCGGC chrV:396219-396547 + 45 5.75e-07 CCCTGTTGTA TACATCCGTACACT TTTGTGAACC chrV:69022-69380 - 29 5.75e-07 AAGCCGAGCA TGCACCCGTACCCC ACAAAGCTTC chrX:607937-608037 + 15 7.21e-07 ATGCCAACCC TCCATCCATACATC CTTTTTAACC chrXVI:794517-794762 + 65 7.21e-07 AACATCTCCA AACACCCATACATA TTTATATTAT chrXVI:731934-732306 + 33 7.21e-07 GCATCGTCAG TACACCCATACCTT TAGGATGGTT chrV:53553-53915 + 34 7.93e-07 CTCTTTGTTT GACACCCACACATA TTTGGTGTTC chrXII:922148-922523 + 59 8.70e-07 GTTTGAAATT GACACCCGTACATA TTCCAATTCT chrIV:130594-130949 - 28 8.70e-07 GACATATACA AACATCCGCACATT TTATAGCTTT chrV:85125-85500 + 37 9.37e-07 AGTGATATCA TCCACCCATACCCC TCGATGTATT chrXII:818847-819166 + 42 1.23e-06 ATACCTTTCC AACATCCGTACATA TTGATTATTG chrXV:81526-81726 - 63 1.61e-06 CAAACACACA CACACACACACATA TATATATATT chrXV:905964-906428 - 6 1.61e-06 CATATACATA CACACACACACATA TATAT chrXII:282516-282882 + 7 1.74e-06 CTTTTT TACACCTGTACATC TTTTCCCTCC chrXIV:495217-495569 - 35 2.20e-06 GTACACTATA CACACCCAAACCTC CTTTAAAAAT chrXV:505130-505490 + 58 2.20e-06 TGAACCTTAT CACACCCAAACATA TGATATGGTA chrXI:313283-313668 + 70 2.55e-06 AGTTTTTGGT TACATCTGCACATC TGGTTGAATA chrVI:221767-222073 - 50 2.77e-06 TAAGACTTTT TTCACCCGTACATT TTTAACACCC chrXVI:406213-406524 + 52 2.77e-06 TATGAAGTTT AACATCCGTACCTT TCCACCTCCA chrVII:534657-535283 - 84 3.18e-06 ATA TGCATCCGTGCATT TGTGTAACCC chrXII:781479-781823 - 55 3.18e-06 CTAGAGAAAA TGCATCCGTGCATT TTCATAAACC chrVII:788346-788732 - 40 3.45e-06 TATTCCTTAC AACATCCGTGCATA CTCTAAACCC chrVII:483364-483718 - 57 3.45e-06 CATTGCTGGG ATCACCCATACATC ACTCTGTTTT chrXI:618844-619190 - 44 3.69e-06 AAATACTATT TCCATCCGTGCCTC TAATAGATTT chrV:423126-423448 + 34 3.97e-06 GCTGCATATT TACCTCCGTACACC TTCTACACCC chrXV:34-258 + 5 4.36e-06 ACCA CCCACACACACACA ACACTACCCT chrV:23517-23930 + 23 4.36e-06 AAACGCATAC CCCACCCCCACATT TCTCATTTAA chrXV:216249-216651 + 58 5.48e-06 GGAACATCCG AGCACCCGCGCCTT CCTCAACCCA chrXII:257707-258006 + 78 5.48e-06 CGTACGCACA TACATACATACATA TAGGTACAT chrIV:117168-117553 + 59 5.83e-06 GTATTAATCT CAGACCCATACATA TCTACACCCA chrXII:897733-898001 + 43 7.56e-06 AGAATTCTAC AACACCTGTACCTC CAAAAAACCC chrIV:308031-308373 + 71 8.70e-06 CATTTCCTGT TACATCCTTACATA TATGCAGGCA chrV:354699-355303 - 74 1.05e-05 GGCTCCTAAC CCCATACATACACT GTATGATGTC chrXVI:876028-876199 - 9 1.89e-05 AACAAAAAAA GGCATACGTACATA CAATGAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YACAYCCRYACATH MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:6561-6862 6.3e-09 2_[+3]_84 chrVIII:562233-562629 6.3e-09 84_[-3]_2 chrXI:666440-666804 6.3e-09 39_[-3]_47 chrXII:11047-11524 6.3e-09 32_[+3]_54 chrV:6166-6554 6.3e-09 37_[+3]_49 chrXIII:5284-5803 6.3e-09 80_[+3]_6 chrXII:5438-5922 6.3e-09 34_[+3]_52 chrVI:4429-4997 6.3e-09 40_[+3]_46 chrXIII:732035-732397 3.7e-08 38_[+3]_48 chrIV:538980-539191 7.5e-08 68_[+3]_18 chrXII:932087-932487 1e-07 37_[-3]_49 chrXII:710644-710881 1e-07 19_[+3]_67 chrVI:95517-95828 1.3e-07 13_[-3]_73 chrIX:254280-254497 2.6e-07 19_[-3]_67 chrXI:431330-431625 2.6e-07 65_[+3]_21 chrII:477058-477422 3.8e-07 42_[+3]_44 chrX:75360-75460 3.8e-07 32_[-3]_54 chrIX:68221-68482 4.5e-07 47_[+3]_39 chrXV:678845-679159 4.5e-07 57_[-3]_29 chrXIII:225369-225711 4.5e-07 53_[+3]_33 chrXII:241619-241997 4.5e-07 47_[+3]_39 chrIV:229535-229741 4.5e-07 64_[+3]_22 chrIV:1401262-1401569 5.1e-07 66_[+3]_20 chrIII:163464-163873 5.1e-07 28_[-3]_58 chrV:396219-396547 5.7e-07 44_[+3]_42 chrV:69022-69380 5.7e-07 28_[-3]_58 chrX:607937-608037 7.2e-07 14_[+3]_72 chrXVI:794517-794762 7.2e-07 64_[+3]_22 chrXVI:731934-732306 7.2e-07 32_[+3]_54 chrV:53553-53915 7.9e-07 33_[+3]_53 chrXII:922148-922523 8.7e-07 58_[+3]_28 chrIV:130594-130949 8.7e-07 27_[-3]_59 chrV:85125-85500 9.4e-07 36_[+3]_50 chrXII:818847-819166 1.2e-06 41_[+3]_45 chrXV:81526-81726 1.6e-06 62_[-3]_24 chrXV:905964-906428 1.6e-06 5_[-3]_81 chrXII:282516-282882 1.7e-06 6_[+3]_80 chrXIV:495217-495569 2.2e-06 34_[-3]_52 chrXV:505130-505490 2.2e-06 57_[+3]_29 chrXI:313283-313668 2.6e-06 69_[+3]_17 chrVI:221767-222073 2.8e-06 49_[-3]_37 chrXVI:406213-406524 2.8e-06 51_[+3]_35 chrVII:534657-535283 3.2e-06 83_[-3]_3 chrXII:781479-781823 3.2e-06 54_[-3]_32 chrVII:788346-788732 3.4e-06 39_[-3]_47 chrVII:483364-483718 3.4e-06 56_[-3]_30 chrXI:618844-619190 3.7e-06 43_[-3]_43 chrV:423126-423448 4e-06 33_[+3]_53 chrXV:34-258 4.4e-06 4_[+3]_82 chrV:23517-23930 4.4e-06 22_[+3]_64 chrXV:216249-216651 5.5e-06 57_[+3]_29 chrXII:257707-258006 5.5e-06 77_[+3]_9 chrIV:117168-117553 5.8e-06 58_[+3]_28 chrXII:897733-898001 7.6e-06 42_[+3]_44 chrIV:308031-308373 8.7e-06 70_[+3]_16 chrV:354699-355303 1.1e-05 73_[-3]_13 chrXVI:876028-876199 1.9e-05 8_[-3]_78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YACAYCCRYACATH MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YACAYCCRYACATH width=14 seqs=57 chrXIV:6561-6862 ( 3) CACACCCACACACC 1 chrVIII:562233-562629 ( 85) CACACCCACACACC 1 chrXI:666440-666804 ( 40) CACACCCACACACC 1 chrXII:11047-11524 ( 33) CACACCCACACACC 1 chrV:6166-6554 ( 38) CACACCCACACACC 1 chrXIII:5284-5803 ( 81) CACACCCACACACC 1 chrXII:5438-5922 ( 35) CACACCCACACACC 1 chrVI:4429-4997 ( 41) CACACCCACACACC 1 chrXIII:732035-732397 ( 39) TACATCCGCACATC 1 chrIV:538980-539191 ( 69) CACACCCACACCCC 1 chrXII:932087-932487 ( 38) TACATCCGTACATC 1 chrXII:710644-710881 ( 20) CACACCCACGCATC 1 chrVI:95517-95828 ( 14) TGCACCCACACACC 1 chrIX:254280-254497 ( 20) CGCACCCACACATT 1 chrXI:431330-431625 ( 66) TACACCCATACACT 1 chrII:477058-477422 ( 43) TGCACCCACACATT 1 chrX:75360-75460 ( 33) TACATCCACACCTC 1 chrIX:68221-68482 ( 48) TACATCCGTACATT 1 chrXV:678845-679159 ( 58) TACATCCGTACATA 1 chrXIII:225369-225711 ( 54) TACATCCGTACATT 1 chrXII:241619-241997 ( 48) TACATCCGTACATA 1 chrIV:229535-229741 ( 65) AACATCCGTACATC 1 chrIV:1401262-1401569 ( 67) TCCACCCACACATA 1 chrIII:163464-163873 ( 29) CGCACCCACGCACC 1 chrV:396219-396547 ( 45) TACATCCGTACACT 1 chrV:69022-69380 ( 29) TGCACCCGTACCCC 1 chrX:607937-608037 ( 15) TCCATCCATACATC 1 chrXVI:794517-794762 ( 65) AACACCCATACATA 1 chrXVI:731934-732306 ( 33) TACACCCATACCTT 1 chrV:53553-53915 ( 34) GACACCCACACATA 1 chrXII:922148-922523 ( 59) GACACCCGTACATA 1 chrIV:130594-130949 ( 28) AACATCCGCACATT 1 chrV:85125-85500 ( 37) TCCACCCATACCCC 1 chrXII:818847-819166 ( 42) AACATCCGTACATA 1 chrXV:81526-81726 ( 63) CACACACACACATA 1 chrXV:905964-906428 ( 6) CACACACACACATA 1 chrXII:282516-282882 ( 7) TACACCTGTACATC 1 chrXIV:495217-495569 ( 35) CACACCCAAACCTC 1 chrXV:505130-505490 ( 58) CACACCCAAACATA 1 chrXI:313283-313668 ( 70) TACATCTGCACATC 1 chrVI:221767-222073 ( 50) TTCACCCGTACATT 1 chrXVI:406213-406524 ( 52) AACATCCGTACCTT 1 chrVII:534657-535283 ( 84) TGCATCCGTGCATT 1 chrXII:781479-781823 ( 55) TGCATCCGTGCATT 1 chrVII:788346-788732 ( 40) AACATCCGTGCATA 1 chrVII:483364-483718 ( 57) ATCACCCATACATC 1 chrXI:618844-619190 ( 44) TCCATCCGTGCCTC 1 chrV:423126-423448 ( 34) TACCTCCGTACACC 1 chrXV:34-258 ( 5) CCCACACACACACA 1 chrV:23517-23930 ( 23) CCCACCCCCACATT 1 chrXV:216249-216651 ( 58) AGCACCCGCGCCTT 1 chrXII:257707-258006 ( 78) TACATACATACATA 1 chrIV:117168-117553 ( 59) CAGACCCATACATA 1 chrXII:897733-898001 ( 43) AACACCTGTACCTC 1 chrIV:308031-308373 ( 71) TACATCCTTACATA 1 chrV:354699-355303 ( 74) CCCATACATACACT 1 chrXVI:876028-876199 ( 9) GGCATACGTACATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YACAYCCRYACATH MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 14 n= 47676 bayes= 11.3866 E= 3.8e-064 -101 95 -179 46 110 -57 -20 -318 -1248 243 -337 -1248 163 -337 -1248 -1248 -1248 171 -1248 34 -160 230 -1248 -1248 -1248 238 -1248 -260 77 -337 121 -418 -318 127 -1248 73 146 -1248 -57 -1248 -1248 246 -1248 -1248 137 -5 -1248 -1248 -1248 80 -1248 110 -18 133 -1248 -27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YACAYCCRYACATH MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 14 nsites= 57 E= 3.8e-064 0.157895 0.350877 0.052632 0.438596 0.684211 0.122807 0.157895 0.035088 0.000000 0.982456 0.017544 0.000000 0.982456 0.017544 0.000000 0.000000 0.000000 0.596491 0.000000 0.403509 0.105263 0.894737 0.000000 0.000000 0.000000 0.947368 0.000000 0.052632 0.543860 0.017544 0.421053 0.017544 0.035088 0.438596 0.000000 0.526316 0.877193 0.000000 0.122807 0.000000 0.000000 1.000000 0.000000 0.000000 0.824561 0.175439 0.000000 0.000000 0.000000 0.315789 0.000000 0.684211 0.280702 0.456140 0.000000 0.263158 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YACAYCCRYACATH MEME-3 regular expression -------------------------------------------------------------------------------- [TC]ACA[CT]CC[AG][TC]ACA[TC][CAT] -------------------------------------------------------------------------------- Time 814.84 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:117168-117553 1.97e-02 58_[+3(5.83e-06)]_28 chrXVI:770804-771028 7.62e-01 100 chrVII:117420-117884 7.54e-01 100 chrIV:1489064-1489712 7.21e-01 100 chrIV:915667-915882 9.74e-01 100 chrVI:4429-4997 1.43e-05 25_[+3(7.54e-08)]_1_[+3(6.28e-09)]_\ [+3(6.28e-09)]_10_[+3(6.28e-09)]_8 chrV:69022-69380 5.69e-04 28_[-3(5.75e-07)]_58 chrVII:882341-884052 4.35e-02 60_[+1(7.90e-05)]_16 chrXII:1038766-1039230 2.39e-02 100 chrXIII:552847-553191 2.90e-01 100 chrXII:818847-819166 8.04e-04 41_[+3(1.23e-06)]_45 chrIV:229535-229741 2.00e-03 64_[+3(4.54e-07)]_22 chrVII:541562-542161 1.19e-08 72_[+2(9.53e-12)]_1 chrX:617723-617823 2.97e-06 45_[-1(3.80e-10)]_31 chrI:679-1143 3.70e-01 100 chrXVI:209903-210478 1.40e-07 62_[-2(9.53e-12)]_11 chrXI:552263-552475 3.37e-01 100 chrIX:183259-183710 6.36e-16 16_[-2(8.83e-13)]_12_[+1(9.87e-11)]_\ 21 chrXVI:718369-719408 3.01e-01 100 chrX:531631-531731 2.75e-12 5_[-1(1.93e-08)]_9_[+2(1.46e-11)]_\ 35 chrVII:806910-807077 5.15e-01 100 chrVII:794175-794647 1.83e-06 55_[-1(3.24e-10)]_21 chrV:85125-85500 4.10e-03 36_[+3(9.37e-07)]_50 chrXIII:57363-57827 3.68e-01 100 chrX:519452-519552 6.55e-01 100 chrXV:83182-83440 1.35e-01 18_[-1(9.73e-05)]_15_[-1(7.90e-05)]_\ 19 chrII:557919-558085 7.63e-01 100 chrXI:99759-99943 9.74e-02 100 chrVII:316942-317344 8.94e-01 100 chrX:536004-536104 6.84e-02 100 chrIV:1236747-1237101 6.73e-01 100 chrXVI:406213-406524 2.10e-03 51_[+3(2.77e-06)]_2_[+3(2.90e-05)]_\ 19 chrXV:444764-446162 4.75e-01 100 chrV:430984-431577 9.23e-03 15_[-2(6.71e-05)]_58 chrXV:110771-111228 4.11e-09 23_[-2(2.95e-09)]_10_[+1(5.03e-07)]_\ 16 chrXII:445276-445740 9.65e-01 100 chrIV:568682-569179 1.70e-12 1_[-1(1.73e-08)]_10_[+2(8.24e-12)]_\ 38 chrXIV:575288-575726 1.35e-01 100 chrXV:407667-408218 9.29e-01 100 chrXIII:887569-888055 7.96e-01 100 chrXII:710644-710881 4.82e-04 19_[+3(1.02e-07)]_67 chrXV:779708-780966 5.25e-01 100 chrXII:897733-898001 1.05e-02 42_[+3(7.56e-06)]_44 chrX:123501-123601 3.52e-01 100 chrXIV:505564-505832 5.71e-01 100 chrVIII:126403-126880 5.43e-01 100 chrXII:815529-815993 5.57e-01 100 chrIII:14578-14772 7.93e-01 100 chrXIV:351925-352375 8.66e-01 100 chrIV:1202553-1203017 7.74e-01 100 chrIV:338107-338571 8.37e-01 100 chrXIII:352083-352463 1.61e-03 56_[-1(7.43e-07)]_20 chrII:0-414 4.42e-01 100 chrXII:258672-259136 2.10e-01 100 chrXII:257707-258006 1.56e-02 73_[+3(4.36e-06)]_13 chrXVI:376997-377333 9.02e-01 100 chrXII:975850-976264 3.03e-04 25_[+1(3.29e-08)]_51 chrXIV:567918-568449 1.35e-06 46_[+2(1.80e-10)]_27 chrXII:687674-688154 2.32e-11 5_[-2(1.56e-09)]_12_[+1(1.45e-09)]_\ 32 chrXII:5438-5922 2.51e-05 34_[+3(6.28e-09)]_16_[+3(7.54e-08)]_\ 3_[+3(7.54e-08)]_5 chrVII:345809-346652 1.58e-02 69_[-2(8.65e-05)]_4 chrXII:712246-712532 7.71e-01 100 chrXIV:332100-332220 9.68e-01 100 chrVII:779392-779843 8.56e-04 48_[-1(5.03e-07)]_28 chrXI:308005-308401 2.32e-11 1_[-2(1.56e-09)]_12_[+1(1.45e-09)]_\ 36 chrXIV:585788-586570 9.57e-01 100 chrXII:151031-151244 9.81e-01 100 chrXV:415989-416453 5.53e-01 100 chrII:613681-614145 3.72e-01 100 chrXV:896589-896817 9.48e-01 100 chrVII:310510-312249 9.39e-01 100 chrXIII:390674-390885 7.62e-01 100 chrX:121769-121869 9.74e-02 100 chrIV:555374-555756 9.55e-01 100 chrIV:1175636-1176160 4.49e-06 15_[+2(1.07e-09)]_58 chrX:227748-227848 8.60e-01 100 chrX:440789-440889 5.14e-01 100 chrXIII:420431-420857 5.20e-12 4_[-2(1.56e-09)]_12_[+1(1.45e-09)]_\ 33 chrXV:912211-912675 4.52e-01 100 chrXII:369221-370315 8.84e-01 100 chrXV:905964-906428 9.78e-03 5_[-3(1.61e-06)]_81 chrXIII:463336-463938 2.18e-04 [+2(3.67e-08)]_73 chrXIII:759759-760223 8.23e-01 100 chrVII:1050239-1050481 5.97e-01 100 chrVIII:119743-120018 8.90e-01 100 chrIV:217441-217905 2.91e-01 100 chrXVI:731934-732306 2.80e-03 32_[+3(7.21e-07)]_54 chrXVI:795110-795356 7.30e-01 100 chrVII:366106-366749 8.79e-01 100 chrIV:449458-449959 9.95e-01 100 chrXVI:172931-174125 7.90e-01 100 chrXV:1004368-1005075 9.95e-01 100 chrXV:1003923-1004409 6.52e-01 100 chrXIII:751197-751661 3.18e-02 100 chrV:303009-303423 6.06e-01 100 chrVIII:386387-386917 4.21e-01 100 chrIX:438883-439343 7.77e-02 100 chrXIV:301805-302269 9.73e-01 100 chrXII:781479-781823 1.27e-02 54_[-3(3.18e-06)]_32 chrV:130966-131349 4.34e-03 22_[+1(1.44e-06)]_54 chrXI:284210-284825 8.16e-01 100 chrIII:295292-295740 1.61e-13 17_[-1(1.91e-09)]_11_[+2(7.01e-11)]_\ 21 chrXI:44924-45083 4.43e-01 100 chrIII:292599-292955 5.51e-01 100 chrIII:177121-177601 6.85e-01 100 chrX:415846-415946 1.02e-03 6_[+1(4.46e-06)]_70 chrV:322034-322953 7.55e-01 100 chrXIV:253120-253584 5.34e-04 62_[+2(1.27e-05)]_11 chrXIII:5284-5803 1.79e-05 48_[+3(6.28e-09)]_5_[+3(6.28e-09)]_\ 1_[+3(2.76e-05)]_4 chrXII:241619-241997 1.72e-04 47_[+3(4.54e-07)]_39 chrXVI:810416-810922 1.11e-04 56_[-1(3.29e-08)]_20 chrXVI:856716-857109 5.66e-08 39_[-1(4.70e-11)]_37 chrVII:440415-441331 2.46e-01 100 chrIV:1204422-1204886 8.38e-01 100 chrXII:363095-363559 1.78e-01 100 chrX:156731-156831 8.87e-01 100 chrIV:1461588-1462078 3.45e-05 22_[+1(2.15e-08)]_54 chrV:51931-52774 9.78e-01 100 chrVIII:451400-452975 1.13e-01 100 chrXI:100236-100645 9.98e-01 100 chrXIII:302832-303050 7.00e-02 100 chrXVI:860183-860575 5.86e-05 49_[-1(1.93e-08)]_27 chrVII:930793-931219 2.69e-12 7_[-2(1.46e-11)]_9_[+1(1.93e-08)]_\ 33 chrXIII:626332-626934 9.79e-01 100 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chrXVI:819291-819786 8.56e-07 40_[-1(9.87e-11)]_36 chrXII:282516-282882 5.66e-03 6_[+3(1.74e-06)]_3_[+3(1.39e-05)]_\ 63 chrXV:900063-900343 1.00e+00 100 chrI:558-731 4.13e-01 100 chrIV:1256909-1257288 1.04e-03 7_[+1(1.69e-07)]_69 chrXVI:731061-731278 8.15e-01 100 chrIX:68221-68482 2.15e-03 47_[+3(4.54e-07)]_39 chrVII:706917-707368 3.65e-09 26_[-2(5.76e-08)]_10_[+1(1.10e-08)]_\ 13 chrX:541307-541407 2.99e-06 18_[-1(5.34e-05)]_10_[+2(3.67e-08)]_\ 21 chrVII:400148-400597 9.86e-01 100 chrV:424762-425272 9.38e-01 100 chrXV:1006597-1007061 6.64e-01 100 chrXIII:259035-259451 1.41e-06 22_[+1(6.85e-11)]_54 chrXIV:174043-174639 7.06e-01 100 chrV:305611-306182 8.76e-01 100 chrI:31-204 5.03e-01 100 chrXV:832352-832788 9.89e-01 100 chrXII:673525-674240 3.96e-01 100 chrIX:136214-136678 8.59e-01 100 chrVII:115302-115738 4.01e-03 17_[-1(1.25e-06)]_59 chrXIII:667062-667526 3.18e-01 100 chrIV:117892-118204 7.52e-01 100 chrXV:976196-976803 5.28e-06 6_[+2(1.07e-09)]_67 chrXV:520665-520905 4.87e-02 100 chrVII:544466-544848 5.60e-02 17_[+1(5.34e-05)]_59 chrVII:784767-785231 2.35e-01 100 chrXII:448486-448930 6.94e-10 2_[-2(2.02e-10)]_10_[+1(5.89e-07)]_\ 37 chrV:396219-396547 5.78e-04 44_[+3(5.75e-07)]_42 chrXVI:514395-514545 8.22e-01 100 chrVII:799894-800358 7.49e-01 100 chrIV:1270104-1270568 3.70e-01 100 chrXV:678011-678314 7.17e-01 100 chrXIII:500224-500688 2.25e-01 100 chrVII:437913-438049 8.61e-01 100 chrX:58928-59028 1.61e-13 22_[-2(7.01e-11)]_11_[+1(1.91e-09)]_\ 16 chrVIII:562233-562629 6.22e-05 84_[-3(6.28e-09)]_2 chrXV:409668-409930 7.91e-01 100 chrXIII:532839-533303 7.96e-01 100 chrVI:95517-95828 8.36e-06 13_[-3(1.27e-07)]_1_[-1(8.96e-05)]_\ 48 chrXII:214707-215151 2.23e-14 14_[-2(1.92e-11)]_11_[+1(3.24e-10)]_\ 24 chrIV:472993-473457 9.15e-01 100 chrIV:976096-976512 4.39e-02 100 chrXVI:277816-278280 9.94e-01 100 chrIX:316128-316585 7.25e-02 100 chrXV:253053-253517 7.35e-01 100 chrIV:1202293-1202757 1.28e-01 100 chrIX:254280-254497 2.09e-04 19_[-3(2.60e-07)]_67 chrV:354699-355303 8.31e-10 16_[+2(9.53e-12)]_30_[-3(1.05e-05)]_\ 13 chrXV:709962-710402 5.06e-03 68_[-1(1.08e-06)]_8 chrIV:1161580-1161895 1.34e-01 100 chrV:434361-434797 1.04e-06 22_[-2(4.19e-08)]_10_[+1(8.61e-06)]_\ 17 chrXI:162274-162775 1.70e-12 23_[-2(8.24e-12)]_10_[+1(1.73e-08)]_\ 16 chrII:606508-606718 6.18e-01 100 chrIV:579311-580464 4.03e-01 100 chrV:101335-101620 4.90e-01 100 chrXI:218295-218571 6.22e-01 100 chrXVI:744118-744555 1.18e-06 31_[+2(1.59e-08)]_42 chrIV:720772-721236 9.48e-01 100 chrXIII:671527-671723 8.55e-01 100 chrXIV:6561-6862 2.05e-05 2_[+3(6.28e-09)]_[+3(3.76e-07)]_70 chrXVI:575244-575708 6.79e-01 100 chrXVI:745725-745846 5.49e-01 100 chrXV:673318-673782 7.34e-01 100 chrIII:142558-142969 5.97e-05 34_[+1(1.93e-08)]_42 chrXII:712928-713539 1.45e-01 100 chrVII:561383-561953 3.75e-01 100 chrXVI:188635-188944 8.18e-02 100 chrII:9386-9803 3.24e-06 38_[-1(1.73e-08)]_38 chrIV:1401262-1401569 1.53e-03 66_[+3(5.10e-07)]_20 chrVII:55865-56329 1.69e-01 100 chrXI:665920-666152 2.63e-01 100 chrVIII:554045-554506 8.60e-01 100 chrXVI:876010-876474 9.64e-01 100 chrIII:197449-197913 9.17e-01 100 chrIV:437536-437992 1.65e-06 57_[-1(6.85e-11)]_19 chrIV:753194-753658 7.90e-01 100 chrXVI:581877-582393 9.70e-08 11_[+2(9.53e-12)]_62 chrV:304013-304477 3.64e-01 100 chrXV:87420-87881 9.74e-01 100 chrV:148515-148667 1.36e-01 45_[+1(5.58e-05)]_31 chrXIII:540378-540691 8.23e-01 100 chrXIV:24360-24824 9.62e-01 100 chrXV:876717-877181 7.23e-01 100 chrIV:490910-491256 2.59e-01 100 chrXV:877551-878015 5.25e-01 100 chrII:89053-89268 9.69e-01 100 chrX:348981-349081 9.39e-02 100 chrVIII:358283-358778 5.15e-08 8_[-2(2.62e-08)]_30_[+1(7.43e-07)]_\ 11 chrXV:340114-340570 5.28e-10 17_[-2(7.96e-10)]_11_[+1(3.35e-07)]_\ 21 chrVII:823261-823703 4.58e-06 49_[-1(1.45e-09)]_27 chrXV:81526-81726 2.51e-03 62_[-3(1.61e-06)]_8_[-3(5.64e-05)]_\ 2 chrXI:309530-309810 2.88e-01 100 chrXIII:632627-633091 9.65e-01 100 chrIV:980844-981270 1.88e-06 24_[+1(6.85e-11)]_52 chrXI:432131-432362 8.66e-01 100 chrXII:639809-640190 8.95e-01 100 chrXVI:622399-622839 4.36e-04 38_[+1(7.43e-07)]_38 chrXI:313283-313668 5.15e-05 23_[+1(8.61e-06)]_22_[+3(2.55e-06)]_\ 17 chrXIV:507341-507533 7.97e-01 100 chrX:120652-120752 8.42e-01 100 chrXIV:619797-619991 8.34e-01 100 chrIV:1016913-1017490 2.40e-07 66_[-2(9.53e-12)]_7 chrXVI:821580-822185 9.99e-01 100 chrIV:1305433-1305884 2.62e-07 21_[-1(6.85e-11)]_55 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************