******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrVII:823272-823664 1.0000 100 chrIV:555372-555709 1.0000 100 chrII:167311-167491 1.0000 100 chrV:77843-78142 1.0000 100 chrXIII:631941-632437 1.0000 100 chrXVI:55880-56554 1.0000 100 chrXIV:546914-547376 1.0000 100 chrVII:730949-731464 1.0000 100 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chrIII:127541-127896 1.0000 100 chrXII:903408-903750 1.0000 100 chrX:354064-354164 1.0000 100 chrXI:551360-551798 1.0000 100 chrV:288275-288720 1.0000 100 chrV:321961-322443 1.0000 100 chrXIII:626089-626419 1.0000 100 chrVII:481765-482527 1.0000 100 chrXII:254967-255204 1.0000 100 chrXIII:124392-124679 1.0000 100 chrXIV:104621-105171 1.0000 100 chrIX:258344-258840 1.0000 100 chrXII:1064896-1065316 1.0000 100 chrXVI:622325-622822 1.0000 100 chrXIII:253259-253755 1.0000 100 chrXVI:745561-745788 1.0000 100 chrXII:198437-198910 1.0000 100 chrVII:311852-312270 1.0000 100 chrXII:202483-202829 1.0000 100 chrII:605742-606112 1.0000 100 chrIV:1201515-1202069 1.0000 100 chrVI:149481-149977 1.0000 100 chrXIV:559105-559356 1.0000 100 chrII:235772-236138 1.0000 100 chrXI:202831-203315 1.0000 100 chrXVI:376860-377356 1.0000 100 chrII:378446-378942 1.0000 100 chrXII:131310-131806 1.0000 100 chrX:227788-227888 1.0000 100 chrXV:159475-159971 1.0000 100 chrVII:401288-401779 1.0000 100 chrIV:308052-308388 1.0000 100 chrXV:896540-896670 1.0000 100 chrX:120271-120371 1.0000 100 chrXIV:628568-628785 1.0000 100 chrVIII:410834-411716 1.0000 100 chrVII:328364-328918 1.0000 100 chrVIII:107475-107971 1.0000 100 chrXII:1028210-1028520 1.0000 100 chrVII:876183-876679 1.0000 100 chrIV:556368-556781 1.0000 100 chrX:651213-651313 1.0000 100 chrIV:83369-83694 1.0000 100 chrIII:142630-142968 1.0000 100 chrIV:521577-521810 1.0000 100 chrXIV:379156-379652 1.0000 100 chrIV:433995-434543 1.0000 100 chrIV:1150495-1151147 1.0000 100 chrII:350622-350967 1.0000 100 chrXI:519295-519524 1.0000 100 chrXI:140731-141333 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 566 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 56600 N= 566 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.319 C 0.181 G 0.181 T 0.319 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MOT1/background): A 0.323 C 0.177 G 0.177 T 0.323 ******************************************************************************** ******************************************************************************** MOTIF TAAYCNKRAGRTCMKSGGTTCGAYYCCSVK MEME-1 width = 30 sites = 61 llr = 1345 E-value = 7.8e-290 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAAYCNKRAGRTCMKSGGTTCGAYYCCSVK MEME-1 Description -------------------------------------------------------------------------------- Simplified A 168::3236243:4::1::::3a1::::3: pos.-specific C 221472:111:17524::::a::24a8641 probability G :1113355366::1468a:::7:1:::425 matrix T 7::5:231:1:63:31::aa:::55:2::4 bits 2.5 * * * 2.2 * * * 2.0 * * * 1.7 * ** * * Relative 1.5 * ***** * * Entropy 1.2 * * * ******* *** (31.8 bits) 1.0 * * * ******** *** 0.7 * * * ** *********** ****** 0.5 ***** ***************** ****** 0.2 ***** ************************ 0.0 ------------------------------ Multilevel TAATCGGGAGGTCCGGGGTTCGATTCCCCG consensus CC CGATAGAAATATC A CC GAT sequence T C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAYCNKRAGRTCMKSGGTTCGAYYCCSVK MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXI:140731-141333 - 44 9.14e-15 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCCCG TATCGGAGTT chrVII:328364-328918 + 26 9.14e-15 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCCCG TATCGGAGTT chrVII:401288-401779 - 52 9.14e-15 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCCCG TATCGGAGTA chrV:487161-487564 - 27 9.14e-15 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCCCG TATCGGAGTA chrX:115694-115794 - 55 9.14e-15 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCCCG TATCGGAGTA chrV:354663-355327 + 23 9.14e-15 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCCCG TATCGGAGTA chrXIV:569703-570059 - 44 1.65e-14 ACCGTGCTAA TAACGCGGGGATCAGCGGTTCGATCCCGCT AGAGACCATT chrXVI:880142-880541 - 13 1.65e-14 ACCGTGCTAA TAACGCGGGGATCAGCGGTTCGATCCCGCT AGAGACCATT chrV:551136-551526 - 12 1.65e-14 ACCGTGCTAA TAACGCGGGGATCAGCGGTTCGATCCCGCT AGAGACCAAT chrIV:667771-668255 - 52 1.65e-14 ACCGTGCTAA TAACGCGGGGATCAGCGGTTCGATCCCGCT AGAGACCATT chrIX:210485-210946 + 36 1.65e-14 ACCGTGCTAA TAACGCGGGGATCAGCGGTTCGATCCCGCT AGAGACCATA chrVII:876183-876679 + 48 3.62e-13 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCCCCT ACAGGGCTTT chrXI:202831-203315 + 11 3.62e-13 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCCCCT ACAGGGCTTT chrIV:1201515-1202069 + 43 3.62e-13 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCCCCT ACAGGGCTAA chrV:135157-135693 - 58 3.62e-13 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCCCCT ACAGGGCTTT chrXVI:581878-582396 + 10 3.62e-13 TATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCCCCT ACAGGGCTTT chrVII:185477-185961 - 53 3.62e-13 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCCCCT ACAGGGCTAT chrII:405653-406193 + 39 1.75e-12 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCCAT CGTGAGTGCT chrVII:736150-736590 + 54 1.75e-12 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCCAT CGTGAGTGTT chrV:138457-139001 + 21 1.75e-12 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCCAT CGTGAGTGTT chrVII:405307-405790 + 6 1.75e-12 ACTTC TAATCAGAAGATTATGGGTTCGACCCCCAT CGTGAGTGCT chrXI:162285-162716 - 45 1.75e-12 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCCAT CGTGAGTGTT chrI:166028-166640 + 18 4.35e-12 GCTTCCCTTG CAAGGAAGAGGTCATCGGTTCGATTCCGGT TGCGTCCAAA chrXV:854007-854433 - 25 4.35e-12 GCTTCCCTTG CAAGGAAGAGGTCATCGGTTCGATTCCGGT TGCGTCCAAT chrX:531605-531705 + 34 7.11e-12 TCCAACGTTG CCATCGTTGGGCCCCCGGTTCGATTCCGGG CTTGCGCAGT chrXV:281963-282408 + 62 7.11e-12 TCCAACGTTG CCATCGTTGGGCCCCCGGTTCGATTCCGGG CTTGCGCAT chrIV:433995-434543 - 53 2.24e-11 GCCACACTAG TAATGTGGAGATCATCGGTTCAAATCCGAT TGGAAGCATA chrIV:644980-645406 - 18 2.24e-11 CTTTCGGTTT TGATCCGGACAACCCCGGTTCGAATCCGGG TAGGACCTTT chrXV:113655-113992 + 64 2.24e-11 GCCACACTAG TAATGTGGAGATCATCGGTTCAAATCCGAT TGGAAGC chrII:266184-266654 + 44 2.24e-11 GCCACACTAG TAATGTGGAGATCATCGGTTCAAATCCGAT TGGAAGCATT chrIV:802539-803011 - 14 2.24e-11 CTTTCGGTTT TGATCCGGACAACCCCGGTTCGAATCCGGG TAGGACCTCT chrXIV:560488-560982 - 16 2.24e-11 GCCACACTAG TAATGTGGAGATCATCGGTTCAAATCCGAT TGGAAGCATA chrX:58940-59040 - 3 2.24e-11 GCCACACTAG TAATGTGGAGATCATCGGTTCAAATCCGAT TG chrXV:980482-981023 + 48 7.05e-11 AGGAACAAAG CATGCGAGAGGCCCTGGGTTCAATTCCCAG CTCGCCCCTT chrXIV:567890-568490 + 40 7.05e-11 GAAGACAAAG CATGCGAGAGGCCCTGGGTTCAATTCCCAG CTCGCCCCTT chrXIV:546914-547376 + 64 7.05e-11 GAAGACAAAG CATGCGAGAGGCCCTGGGTTCAATTCCCAG CTCGCCC chrX:541316-541416 + 70 1.15e-10 TGGGCGCTTG TCGCGTGCCAGATCGGGGTTCAATTCCCCG T chrX:374187-374287 - 14 1.15e-10 TGGGCGCTTG TCGCGTGCCAGATCGGGGTTCAATTCCCCG TCGCGGAGAT chrVII:544408-544858 - 2 1.15e-10 TGGGCGCTTG TCGCGTGCCAGATCGGGGTTCAATTCCCCG T chrIX:324058-324554 - 55 1.15e-10 TGGGCGCTTG TCGCGTGCCAGATCGGGGTTCAATTCCCCG TCGCGGAGAT chrXIII:463327-463921 + 14 1.15e-10 TGGGCGCTTG TCGCGTGCCAGATCGGGGTTCAATTCCCCG TCGCGGAGAT chrXII:426961-427454 + 9 1.15e-10 GGCGCTTG TCGCGTGCCAGATCGGGGTTCAATTCCCCG TCGCGGAGAA chrXV:438447-438966 + 45 1.83e-10 TTAAGCAAGG ATACCGAAATGTCAGGGGTTCGAGCCCCCT ATGAGGAGTT chrIV:359361-359872 + 69 1.83e-10 TTAAGCAAGG ATACCGAAATGTCAGGGGTTCGAGCCCCCT AT chrXIV:96057-96504 - 19 2.85e-10 TCCCACCCTT CCAAGGTGGGGACACGGGTTCGATTCTCGT ACCGCTCAAA chrXII:687648-688120 - 33 5.17e-10 ATCTGCTTAA CACGCAGAACGTCCCCAGTTCGATCCTGGG CGAAATCATT chrX:378178-378278 + 71 5.17e-10 ATCTGCTTAA CACGCAGAACGTCCCCAGTTCGATCCTGGG chrVII:412102-412567 - 18 5.17e-10 ATCTGCTTAA CACGCAGAACGTCCCCAGTTCGATCCTGGG CGAAATCAAG chrV:438523-438957 + 46 5.17e-10 ATCTGCTTAA CACGCAGAACGTCCCCAGTTCGATCCTGGG CGAAATCAAT chrXVI:622325-622822 - 25 1.33e-09 TTCGGTCAAG TTATCTGGAGGTCCTGTGTTCGATCCACAG AATTCGCATT chrXVI:338751-339059 - 1 1.33e-09 GCAGGGCTCA TAACCCTGATGTCCTCGGATCGAAACCGAG chrX:517645-517745 - 16 1.33e-09 GCAGGGCTCA TAACCCTGATGTCCTCGGATCGAAACCGAG CGGCGCTAAG chrX:354064-354164 + 24 2.94e-09 TACCACTACG AAATCTTGAGATCGGGCGTTCGACTCGCCC CCGGGAGATT chrXIII:168588-169111 + 47 2.94e-09 TACCACTACG AAATCTTGAGATCGGGCGTTCGACTCGCCC CCGGGAGATA chrVI:137253-137739 - 48 3.86e-09 GTGCGACTGT TAATCGCAAGATCGTGAGTTCAACCCTCAC TGGGGTCGTT chrVII:730949-731464 + 17 3.86e-09 GTGCGACTGT TAATCGCAAGATCGTGAGTTCAACCCTCAC TGGGGTCGTT chrVIII:466766-467249 + 67 1.33e-08 GTTGCACTTG TAATGCAAAGGTCGCTAGTTCAATTCTGGC AGGT chrXVI:55880-56554 - 10 1.67e-08 AATAAGATTG CAATCGAAGGGTTGCAGGTTCAATTCCTGT CCGTTTCAA chrXVI:435654-436168 - 40 1.77e-08 AGCAGATTGC AAATCTGTTGGTCCTTAGTTCGATCCTGAG TGCGAGCTTT chrV:434357-434791 - 25 3.71e-08 CACATCGTTG TGGCCGATGAAACCCTGGTTCGATTCTAGG AGATGGCATT chrVII:319603-320062 + 33 3.71e-08 CACATCGTTG TGGCCGATGAAACCCTGGTTCGATTCTAGG AGATGGCATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAYCNKRAGRTCMKSGGTTCGAYYCCSVK MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXI:140731-141333 9.1e-15 43_[-1]_27 chrVII:328364-328918 9.1e-15 25_[+1]_45 chrVII:401288-401779 9.1e-15 51_[-1]_19 chrV:487161-487564 9.1e-15 26_[-1]_44 chrX:115694-115794 9.1e-15 54_[-1]_16 chrV:354663-355327 9.1e-15 22_[+1]_48 chrXIV:569703-570059 1.7e-14 43_[-1]_27 chrXVI:880142-880541 1.7e-14 12_[-1]_58 chrV:551136-551526 1.7e-14 11_[-1]_59 chrIV:667771-668255 1.7e-14 51_[-1]_19 chrIX:210485-210946 1.7e-14 35_[+1]_35 chrVII:876183-876679 3.6e-13 47_[+1]_23 chrXI:202831-203315 3.6e-13 10_[+1]_60 chrIV:1201515-1202069 3.6e-13 42_[+1]_28 chrV:135157-135693 3.6e-13 57_[-1]_13 chrXVI:581878-582396 3.6e-13 9_[+1]_61 chrVII:185477-185961 3.6e-13 52_[-1]_18 chrII:405653-406193 1.8e-12 38_[+1]_32 chrVII:736150-736590 1.8e-12 53_[+1]_17 chrV:138457-139001 1.8e-12 20_[+1]_50 chrVII:405307-405790 1.8e-12 5_[+1]_65 chrXI:162285-162716 1.8e-12 44_[-1]_26 chrI:166028-166640 4.4e-12 17_[+1]_53 chrXV:854007-854433 4.4e-12 24_[-1]_46 chrX:531605-531705 7.1e-12 33_[+1]_37 chrXV:281963-282408 7.1e-12 61_[+1]_9 chrIV:433995-434543 2.2e-11 52_[-1]_18 chrIV:644980-645406 2.2e-11 17_[-1]_53 chrXV:113655-113992 2.2e-11 63_[+1]_7 chrII:266184-266654 2.2e-11 43_[+1]_27 chrIV:802539-803011 2.2e-11 13_[-1]_57 chrXIV:560488-560982 2.2e-11 15_[-1]_55 chrX:58940-59040 2.2e-11 2_[-1]_68 chrXV:980482-981023 7.1e-11 47_[+1]_23 chrXIV:567890-568490 7.1e-11 39_[+1]_31 chrXIV:546914-547376 7.1e-11 63_[+1]_7 chrX:541316-541416 1.1e-10 69_[+1]_1 chrX:374187-374287 1.1e-10 13_[-1]_57 chrVII:544408-544858 1.1e-10 1_[-1]_69 chrIX:324058-324554 1.1e-10 54_[-1]_16 chrXIII:463327-463921 1.1e-10 13_[+1]_57 chrXII:426961-427454 1.1e-10 8_[+1]_62 chrXV:438447-438966 1.8e-10 44_[+1]_26 chrIV:359361-359872 1.8e-10 68_[+1]_2 chrXIV:96057-96504 2.9e-10 18_[-1]_52 chrXII:687648-688120 5.2e-10 32_[-1]_38 chrX:378178-378278 5.2e-10 70_[+1] chrVII:412102-412567 5.2e-10 17_[-1]_53 chrV:438523-438957 5.2e-10 45_[+1]_25 chrXVI:622325-622822 1.3e-09 24_[-1]_46 chrXVI:338751-339059 1.3e-09 [-1]_70 chrX:517645-517745 1.3e-09 15_[-1]_55 chrX:354064-354164 2.9e-09 23_[+1]_47 chrXIII:168588-169111 2.9e-09 46_[+1]_24 chrVI:137253-137739 3.9e-09 47_[-1]_23 chrVII:730949-731464 3.9e-09 16_[+1]_54 chrVIII:466766-467249 1.3e-08 66_[+1]_4 chrXVI:55880-56554 1.7e-08 9_[-1]_61 chrXVI:435654-436168 1.8e-08 39_[-1]_31 chrV:434357-434791 3.7e-08 24_[-1]_46 chrVII:319603-320062 3.7e-08 32_[+1]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAYCNKRAGRTCMKSGGTTCGAYYCCSVK MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAAYCNKRAGRTCMKSGGTTCGAYYCCSVK width=30 seqs=61 chrXI:140731-141333 ( 44) TCACCGTGGAGACCGGGGTTCGACTCCCCG 1 chrVII:328364-328918 ( 26) TCACCGTGGAGACCGGGGTTCGACTCCCCG 1 chrVII:401288-401779 ( 52) TCACCGTGGAGACCGGGGTTCGACTCCCCG 1 chrV:487161-487564 ( 27) TCACCGTGGAGACCGGGGTTCGACTCCCCG 1 chrX:115694-115794 ( 55) TCACCGTGGAGACCGGGGTTCGACTCCCCG 1 chrV:354663-355327 ( 23) TCACCGTGGAGACCGGGGTTCGACTCCCCG 1 chrXIV:569703-570059 ( 44) TAACGCGGGGATCAGCGGTTCGATCCCGCT 1 chrXVI:880142-880541 ( 13) TAACGCGGGGATCAGCGGTTCGATCCCGCT 1 chrV:551136-551526 ( 12) TAACGCGGGGATCAGCGGTTCGATCCCGCT 1 chrIV:667771-668255 ( 52) TAACGCGGGGATCAGCGGTTCGATCCCGCT 1 chrIX:210485-210946 ( 36) TAACGCGGGGATCAGCGGTTCGATCCCGCT 1 chrVII:876183-876679 ( 48) TAATCATAAGGTTAGGGGTTCGAGCCCCCT 1 chrXI:202831-203315 ( 11) TAATCATAAGGTTAGGGGTTCGAGCCCCCT 1 chrIV:1201515-1202069 ( 43) TAATCATAAGGTTAGGGGTTCGAGCCCCCT 1 chrV:135157-135693 ( 58) TAATCATAAGGTTAGGGGTTCGAGCCCCCT 1 chrXVI:581878-582396 ( 10) TAATCATAAGGTTAGGGGTTCGAGCCCCCT 1 chrVII:185477-185961 ( 53) TAATCATAAGGTTAGGGGTTCGAGCCCCCT 1 chrII:405653-406193 ( 39) TAATCAGAAGATTATGGGTTCGACCCCCAT 1 chrVII:736150-736590 ( 54) TAATCAGAAGATTATGGGTTCGACCCCCAT 1 chrV:138457-139001 ( 21) TAATCAGAAGATTATGGGTTCGACCCCCAT 1 chrVII:405307-405790 ( 6) TAATCAGAAGATTATGGGTTCGACCCCCAT 1 chrXI:162285-162716 ( 45) TAATCAGAAGATTATGGGTTCGACCCCCAT 1 chrI:166028-166640 ( 18) CAAGGAAGAGGTCATCGGTTCGATTCCGGT 1 chrXV:854007-854433 ( 25) CAAGGAAGAGGTCATCGGTTCGATTCCGGT 1 chrX:531605-531705 ( 34) CCATCGTTGGGCCCCCGGTTCGATTCCGGG 1 chrXV:281963-282408 ( 62) CCATCGTTGGGCCCCCGGTTCGATTCCGGG 1 chrIV:433995-434543 ( 53) TAATGTGGAGATCATCGGTTCAAATCCGAT 1 chrIV:644980-645406 ( 18) TGATCCGGACAACCCCGGTTCGAATCCGGG 1 chrXV:113655-113992 ( 64) TAATGTGGAGATCATCGGTTCAAATCCGAT 1 chrII:266184-266654 ( 44) TAATGTGGAGATCATCGGTTCAAATCCGAT 1 chrIV:802539-803011 ( 14) TGATCCGGACAACCCCGGTTCGAATCCGGG 1 chrXIV:560488-560982 ( 16) TAATGTGGAGATCATCGGTTCAAATCCGAT 1 chrX:58940-59040 ( 3) TAATGTGGAGATCATCGGTTCAAATCCGAT 1 chrXV:980482-981023 ( 48) CATGCGAGAGGCCCTGGGTTCAATTCCCAG 1 chrXIV:567890-568490 ( 40) CATGCGAGAGGCCCTGGGTTCAATTCCCAG 1 chrXIV:546914-547376 ( 64) CATGCGAGAGGCCCTGGGTTCAATTCCCAG 1 chrX:541316-541416 ( 70) TCGCGTGCCAGATCGGGGTTCAATTCCCCG 1 chrX:374187-374287 ( 14) TCGCGTGCCAGATCGGGGTTCAATTCCCCG 1 chrVII:544408-544858 ( 2) TCGCGTGCCAGATCGGGGTTCAATTCCCCG 1 chrIX:324058-324554 ( 55) TCGCGTGCCAGATCGGGGTTCAATTCCCCG 1 chrXIII:463327-463921 ( 14) TCGCGTGCCAGATCGGGGTTCAATTCCCCG 1 chrXII:426961-427454 ( 9) TCGCGTGCCAGATCGGGGTTCAATTCCCCG 1 chrXV:438447-438966 ( 45) ATACCGAAATGTCAGGGGTTCGAGCCCCCT 1 chrIV:359361-359872 ( 69) ATACCGAAATGTCAGGGGTTCGAGCCCCCT 1 chrXIV:96057-96504 ( 19) CCAAGGTGGGGACACGGGTTCGATTCTCGT 1 chrXII:687648-688120 ( 33) CACGCAGAACGTCCCCAGTTCGATCCTGGG 1 chrX:378178-378278 ( 71) CACGCAGAACGTCCCCAGTTCGATCCTGGG 1 chrVII:412102-412567 ( 18) CACGCAGAACGTCCCCAGTTCGATCCTGGG 1 chrV:438523-438957 ( 46) CACGCAGAACGTCCCCAGTTCGATCCTGGG 1 chrXVI:622325-622822 ( 25) TTATCTGGAGGTCCTGTGTTCGATCCACAG 1 chrXVI:338751-339059 ( 1) TAACCCTGATGTCCTCGGATCGAAACCGAG 1 chrX:517645-517745 ( 16) TAACCCTGATGTCCTCGGATCGAAACCGAG 1 chrX:354064-354164 ( 24) AAATCTTGAGATCGGGCGTTCGACTCGCCC 1 chrXIII:168588-169111 ( 47) AAATCTTGAGATCGGGCGTTCGACTCGCCC 1 chrVI:137253-137739 ( 48) TAATCGCAAGATCGTGAGTTCAACCCTCAC 1 chrVII:730949-731464 ( 17) TAATCGCAAGATCGTGAGTTCAACCCTCAC 1 chrVIII:466766-467249 ( 67) TAATGCAAAGGTCGCTAGTTCAATTCTGGC 1 chrXVI:55880-56554 ( 10) CAATCGAAGGGTTGCAGGTTCAATTCCTGT 1 chrXVI:435654-436168 ( 40) AAATCTGTTGGTCCTTAGTTCGATCCTGAG 1 chrV:434357-434791 ( 25) TGGCCGATGAAACCCTGGTTCGATTCTAGG 1 chrVII:319603-320062 ( 33) TGGCCGATGAAACCCTGGTTCGATTCTAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAYCNKRAGRTCMKSGGTTCGAYYCCSVK MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 40186 bayes= 11.349 E= 7.8e-290 -198 26 -1257 113 99 47 -144 -271 123 -144 -44 -271 -429 109 -27 51 -1257 192 89 -1257 -21 -11 81 -39 -84 -244 142 -5 9 -85 142 -198 91 -85 65 -429 -49 -85 177 -230 23 -1257 181 -1257 -21 -111 -1257 99 -1257 199 -1257 -13 40 142 -85 -1257 -1257 26 132 9 -429 102 165 -230 -130 -244 221 -429 -1257 -1257 249 -1257 -330 -1257 -1257 158 -1257 -1257 -1257 163 -1257 249 -1257 -1257 -13 -1257 199 -1257 163 -1257 -1257 -1257 -113 47 -44 56 -330 126 -1257 75 -1257 249 -1257 -1257 -429 212 -244 -84 -330 165 115 -429 -5 132 47 -1257 -1257 -111 142 46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAYCNKRAGRTCMKSGGTTCGAYYCCSVK MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 61 E= 7.8e-290 0.081967 0.213115 0.000000 0.704918 0.639344 0.245902 0.065574 0.049180 0.754098 0.065574 0.131148 0.049180 0.016393 0.377049 0.147541 0.459016 0.000000 0.672131 0.327869 0.000000 0.278689 0.163934 0.311475 0.245902 0.180328 0.032787 0.475410 0.311475 0.344262 0.098361 0.475410 0.081967 0.606557 0.098361 0.278689 0.016393 0.229508 0.098361 0.606557 0.065574 0.377049 0.000000 0.622951 0.000000 0.278689 0.081967 0.000000 0.639344 0.000000 0.704918 0.000000 0.295082 0.426230 0.475410 0.098361 0.000000 0.000000 0.213115 0.442623 0.344262 0.016393 0.360656 0.557377 0.065574 0.131148 0.032787 0.819672 0.016393 0.000000 0.000000 1.000000 0.000000 0.032787 0.000000 0.000000 0.967213 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.295082 0.000000 0.704918 0.000000 1.000000 0.000000 0.000000 0.000000 0.147541 0.245902 0.131148 0.475410 0.032787 0.426230 0.000000 0.540984 0.000000 1.000000 0.000000 0.000000 0.016393 0.770492 0.032787 0.180328 0.032787 0.557377 0.393443 0.016393 0.311475 0.442623 0.245902 0.000000 0.000000 0.081967 0.475410 0.442623 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAYCNKRAGRTCMKSGGTTCGAYYCCSVK MEME-1 regular expression -------------------------------------------------------------------------------- [TC][AC]A[TC][CG][GAT][GT][GA][AG][GA][GA][TA][CT][CA][GTC][GC]GGTTC[GA]A[TC][TC]CC[CG][CAG][GT] -------------------------------------------------------------------------------- Time 312.28 secs. ******************************************************************************** ******************************************************************************** MOTIF GSKBNBDTGGYBYAGTKGKT MEME-2 width = 20 sites = 71 llr = 1036 E-value = 3.7e-147 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSKBNBDTGGYBYAGTKGKT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :111212:2:::1a2::::3 pos.-specific C :42434::::654:::2::: probability G 9532324:8a:31:8:5a5: matrix T ::43344a::425::93:57 bits 2.5 * * 2.2 * * 2.0 * * * 1.7 * * * ** * Relative 1.5 * *** ** * Entropy 1.2 * *** *** * (21.0 bits) 1.0 ** **** *** * 0.7 ** ***** ****** 0.5 ** ****** ******* 0.2 ******************** 0.0 -------------------- Multilevel GGTCCCGTGGCCTAGTGGGT consensus CGTTTT A TGC T TA sequence G A T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSKBNBDTGGYBYAGTKGKT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chrXVI:856706-857085 + 57 7.66e-11 AACAAGATTC GGGCGTGTGGCGTAGTCGGT AGCGCGCTCC chrIV:410199-410519 + 70 7.66e-11 TACAAATATT GGGCGTGTGGCGTAGTCGGT AGCGCGCTCC chrXI:219720-220043 + 64 7.66e-11 ACAGTAAATA GGGCGTGTGGCGTAGTCGGT AGCGCGCTCC chrVII:738876-739337 + 66 2.98e-10 GAAAAAAATA GGTCTCTTGGCCCAGTTGGT TAAGGCACCG chrXVI:880142-880541 - 59 2.98e-10 ACAATATAAT GGTCTCTTGGCCCAGTTGGT TAAGGCACCG chrV:551136-551526 - 58 2.98e-10 ACAGATTACA GGTCTCTTGGCCCAGTTGGT TAAGGCACCG chrXII:1051912-1052363 - 38 2.98e-10 TCCTTTTCAT GGTCTCTTGGCCCAGTTGGT TAAGGCACCG chrXVI:819308-819724 + 63 2.98e-10 ACAATAGAAT GGTCTCTTGGCCCAGTTGGT TAAGGCACCG chrXV:300855-301408 + 16 1.15e-09 AGAAAAGATC GGGCGTGTGGTCTAGTGGTA TGATTCTCGC chrXII:687648-688120 - 79 1.92e-09 TA GGTTTCGTGGTCTAGTCGGT TATGGCATCT chrX:378178-378278 + 35 1.92e-09 TAAATTAATA GGTTTCGTGGTCTAGTCGGT TATGGCATCT chrVIII:85229-85528 - 24 1.92e-09 ATAAGAATTT GGTTTCGTGGTCTAGTCGGT TATGGCATCT chrVII:794211-794622 + 51 1.92e-09 CATAGATTGC GGGCACATGGCGCAGTTGGT AGCGCGCTTC chrXIII:420428-420874 - 41 1.92e-09 ACAAATAACA GGTTTCGTGGTCTAGTCGGT TATGGCATCT chrVII:412102-412567 - 64 1.92e-09 TCAAAAAACT GGTTTCGTGGTCTAGTCGGT TATGGCATCT chrXI:308070-308370 - 28 1.92e-09 ACAATTAAGT GGTTTCGTGGTCTAGTCGGT TATGGCATCT chrV:438523-438957 + 10 1.92e-09 AACAAATTA GGTTTCGTGGTCTAGTCGGT TATGGCATCT chrXV:854007-854433 - 70 1.92e-09 ACAGTCATCA GGGCACATGGCGCAGTTGGT AGCGCGCTTC chrXI:379489-379826 + 73 1.92e-09 CAGATTAATA GGTTTCGTGGTCTAGTCGGT TATGGCAT chrVII:823272-823664 + 64 1.92e-09 CAATAAGAGT GGTTTCGTGGTCTAGTCGGT TATGGCATCT chrXII:731892-732266 + 61 1.00e-08 AACATACAAT GGGAGTTTGGCCGAGTGGTT TAAGGCGTCA chrXII:592372-592807 - 61 1.00e-08 AACATACAAT GGGAGTTTGGCCGAGTGGTT TAAGGCGTCA chrXIV:96057-96504 - 63 1.70e-08 TCCAACACAT GGGCGGTTAGTGTAGTGGTT ATCATCCCAC chrXV:110807-111239 - 41 1.70e-08 CAATTAACCC GGGCGGTTAGTGTAGTGGTT ATCATCCCAC chrVII:779403-779835 + 47 1.70e-08 AGTTAACCCC GGGCGGTTAGTGTAGTGGTT ATCATCCCAC chrV:288275-288720 - 58 2.47e-08 CATAATGATA GGCACTATGGCCGAGTGGTT AAGGCGACAG chrIII:227727-228199 + 29 2.47e-08 AAATCGAAAT GGCACTATGGCCGAGTGGTT AAGGCGAGAG chrIV:644980-645406 - 62 3.53e-08 CAGTTGTTAC GGTCCTATAGTGTAGTGGTT ATCACTTTCG chrIV:802539-803011 - 58 3.53e-08 ATGAATTGTC GGTCCTATAGTGTAGTGGTT ATCACTTTCG chrIV:520767-521127 + 75 3.53e-08 TCCATTTTAG GGTCCTATAGTGTAGTGGTT ATCACT chrXII:448496-448922 - 43 3.53e-08 AAGAAGTTCC GGTCCTATAGTGTAGTGGTT ATCACTTTCG chrXV:113655-113992 + 29 5.55e-08 CAGAGATTTA GCTTCTATGGCCAAGTTGGT AAGGCGCCAC chrII:266184-266654 + 9 5.55e-08 CAAAAACT GCTTCTATGGCCAAGTTGGT AAGGCGCCAC chrXIV:560488-560982 - 61 5.55e-08 GTAATAACGG GCTTCTATGGCCAAGTTGGT AAGGCGCCAC chrX:58940-59040 - 48 5.55e-08 TAAAATAGAA GCTTCTATGGCCAAGTTGGT AAGGCGCCAC chrXIV:631724-632122 - 25 6.19e-08 AACTTCTACC GGGCGTGTGGTCTAGAGGTA TGATTCTCGC chrIII:123429-123909 - 10 6.19e-08 TTTCAAAGGA GGGCGTGTGGTCTAGAGGTA TGATTCTCG chrVII:876183-876679 + 13 8.53e-08 TAATAGAATA GCCTTGTTGGCGCAATCGGT AGCGCGTATG chrIV:1201515-1202069 + 8 8.53e-08 ATAAATA GCCTTGTTGGCGCAATCGGT AGCGCGTATG chrVIII:466766-467249 + 33 1.16e-07 TGTATTTTTA GCCTCCTTAGCTTAGTGGTA GAGCGTTGCA chrII:405653-406193 + 5 1.28e-07 AGTA GCTCGCGTGGCGTAATGGCA ACGCGTCTGA chrVII:736150-736590 + 20 1.28e-07 AATTTCAATA GCTCGCGTGGCGTAATGGCA ACGCGTCTGA chrIII:142630-142968 - 3 1.72e-07 AAGATTACTA GCGCAAGTGGTTTAGTGGTA AA chrIV:83369-83694 + 67 1.72e-07 AGTTCACTTA GCGCAAGTGGTTTAGTGGTA AAATCCAACG chrVII:845463-845851 + 42 1.72e-07 TAAATAACAA GCGCAAGTGGTTTAGTGGTA AAATCCAACG chrIV:992556-993086 + 61 1.72e-07 ACAATTGTGA GCGCAAGTGGTTTAGTGGTA AAATCCAACG chrXV:281963-282408 + 29 1.72e-07 ACATGAAAGC GCGCAAGTGGTTTAGTGGTA AAATCCAACG chrIII:127541-127896 + 48 1.89e-07 AAGATAAAAT GACTCCATGGCCAAGTTGGT TAAGGCGTGC chrXVI:810404-810905 + 72 1.89e-07 CATTATTTGC GACTCCATGGCCAAGTTGGT TAAGGCGTG chrII:347397-347827 + 41 2.08e-07 TCATTTATAC GGAGGGTTGGCCGAGTGGTC TAAGGCGGCA chrX:424262-424362 - 56 2.08e-07 TAAATAAGAT GGAGGGTTGGCCGAGTGGTC TAAGGCGGCA chrIV:1256927-1257291 - 1 2.74e-07 GATCTTCTTA GCGAAAGTGGTTCAGTGGTT chrXV:709997-710367 + 69 4.25e-07 AAGAATTAGC AGCGCCGTGGCGCAGTGGAA GCGCGCAGGG chrXVI:338751-339059 - 45 4.25e-07 ATGATTTAGC AGCGCCGTGGCGCAGTGGAA GCGCGCAGGG chrX:517645-517745 - 60 4.25e-07 ATAAAAGTTA AGCGCCGTGGCGCAGTGGAA GCGCGCAGGG chrXI:326835-327195 - 8 7.54e-07 CAAGAGAATG GCCGCTATGGACCAATGGTT AGAAATG chrII:36222-36555 + 60 1.11e-06 TTAGTTGTAA GCGGATTTAGCTCAGTTGGG AGAGCGCCAG chrXIII:352079-352462 + 60 1.11e-06 ATGAATATAA GCGGATTTAGCTCAGTTGGG AGAGCGCCAG chrVIII:237692-238148 - 50 1.11e-06 CAAATAGTAA GCGGATTTAGCTCAGTTGGG AGAGCGCCAG chrVII:878645-878989 - 29 1.19e-06 ATTTCAAGAT GAAGCGGTGGCTCAATGGTA GAGCTTTCGA chrVII:287200-287662 - 55 1.19e-06 ATTTCAAGAT GAAGCGGTGGCTCAATGGTA GAGCTTTCGA chrX:415857-415957 - 8 1.19e-06 AACAAAAGTT GAAGCGGTGGCTCAATGGTA GAGCTTT chrIV:1461555-1462058 - 54 1.19e-06 ACAAATAAGT GGTTGTTTGGCCGAGCGGTC TAAGGCGCCT chrXI:302659-303196 + 41 1.19e-06 ATTCCAAGAT GAAGCGGTGGCTCAATGGTA GAGCTTTCGA chrXII:818418-818792 + 54 1.48e-06 AATTTATTAT GCTCCTCTAGTGCAATGGTT AGCATGCATT chrXV:622335-622831 + 52 2.25e-06 CACACTTCTG GATTGTTTGGCCGAAAGGGT TACCATGGGT chrVII:559972-560189 - 66 2.93e-06 CATATATATA GCTAGCTTGGATCAATTGGT CTGTCTCGGA chrIV:359361-359872 + 11 2.93e-06 GAAGAACTCA TCCTTGTTAGCTCAGTTGGT AGAGCGTTCG chrVII:115270-115761 + 23 2.93e-06 GAAGAACTCA TCCTTGTTAGCTCAGTTGGT AGAGCGTTCG chrV:434357-434791 - 69 3.54e-06 TTGAAAAGTC GCCATCTTAGTATAGTGGTT AGTACACATC chrXIII:887286-887782 - 8 5.08e-06 AGCAGATGCA TCTGTGTTGGTGTAATTGTT AGTAACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSKBNBDTGGYBYAGTKGKT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:856706-857085 7.7e-11 56_[+2]_24 chrIV:410199-410519 7.7e-11 69_[+2]_11 chrXI:219720-220043 7.7e-11 63_[+2]_17 chrVII:738876-739337 3e-10 65_[+2]_15 chrXVI:880142-880541 3e-10 58_[-2]_22 chrV:551136-551526 3e-10 57_[-2]_23 chrXII:1051912-1052363 3e-10 37_[-2]_43 chrXVI:819308-819724 3e-10 62_[+2]_18 chrXV:300855-301408 1.1e-09 15_[+2]_65 chrXII:687648-688120 1.9e-09 78_[-2]_2 chrX:378178-378278 1.9e-09 34_[+2]_46 chrVIII:85229-85528 1.9e-09 23_[-2]_57 chrVII:794211-794622 1.9e-09 50_[+2]_30 chrXIII:420428-420874 1.9e-09 40_[-2]_40 chrVII:412102-412567 1.9e-09 63_[-2]_17 chrXI:308070-308370 1.9e-09 27_[-2]_53 chrV:438523-438957 1.9e-09 9_[+2]_71 chrXV:854007-854433 1.9e-09 69_[-2]_11 chrXI:379489-379826 1.9e-09 72_[+2]_8 chrVII:823272-823664 1.9e-09 63_[+2]_17 chrXII:731892-732266 1e-08 60_[+2]_20 chrXII:592372-592807 1e-08 60_[-2]_20 chrXIV:96057-96504 1.7e-08 62_[-2]_18 chrXV:110807-111239 1.7e-08 40_[-2]_40 chrVII:779403-779835 1.7e-08 46_[+2]_34 chrV:288275-288720 2.5e-08 57_[-2]_23 chrIII:227727-228199 2.5e-08 28_[+2]_52 chrIV:644980-645406 3.5e-08 61_[-2]_19 chrIV:802539-803011 3.5e-08 57_[-2]_23 chrIV:520767-521127 3.5e-08 74_[+2]_6 chrXII:448496-448922 3.5e-08 42_[-2]_38 chrXV:113655-113992 5.6e-08 28_[+2]_52 chrII:266184-266654 5.6e-08 8_[+2]_72 chrXIV:560488-560982 5.6e-08 60_[-2]_20 chrX:58940-59040 5.6e-08 47_[-2]_33 chrXIV:631724-632122 6.2e-08 24_[-2]_56 chrIII:123429-123909 6.2e-08 9_[-2]_71 chrVII:876183-876679 8.5e-08 12_[+2]_68 chrIV:1201515-1202069 8.5e-08 7_[+2]_73 chrVIII:466766-467249 1.2e-07 32_[+2]_48 chrII:405653-406193 1.3e-07 4_[+2]_76 chrVII:736150-736590 1.3e-07 19_[+2]_61 chrIII:142630-142968 1.7e-07 2_[-2]_78 chrIV:83369-83694 1.7e-07 66_[+2]_14 chrVII:845463-845851 1.7e-07 41_[+2]_39 chrIV:992556-993086 1.7e-07 60_[+2]_20 chrXV:281963-282408 1.7e-07 28_[+2]_52 chrIII:127541-127896 1.9e-07 47_[+2]_33 chrXVI:810404-810905 1.9e-07 71_[+2]_9 chrII:347397-347827 2.1e-07 40_[+2]_40 chrX:424262-424362 2.1e-07 55_[-2]_25 chrIV:1256927-1257291 2.7e-07 [-2]_80 chrXV:709997-710367 4.2e-07 68_[+2]_12 chrXVI:338751-339059 4.2e-07 44_[-2]_36 chrX:517645-517745 4.2e-07 59_[-2]_21 chrXI:326835-327195 7.5e-07 7_[-2]_73 chrII:36222-36555 1.1e-06 59_[+2]_21 chrXIII:352079-352462 1.1e-06 59_[+2]_21 chrVIII:237692-238148 1.1e-06 49_[-2]_31 chrVII:878645-878989 1.2e-06 28_[-2]_52 chrVII:287200-287662 1.2e-06 54_[-2]_26 chrX:415857-415957 1.2e-06 7_[-2]_73 chrIV:1461555-1462058 1.2e-06 53_[-2]_27 chrXI:302659-303196 1.2e-06 40_[+2]_40 chrXII:818418-818792 1.5e-06 53_[+2]_27 chrXV:622335-622831 2.2e-06 51_[+2]_29 chrVII:559972-560189 2.9e-06 65_[-2]_15 chrIV:359361-359872 2.9e-06 10_[+2]_70 chrVII:115270-115761 2.9e-06 22_[+2]_58 chrV:434357-434791 3.5e-06 68_[-2]_12 chrXIII:887286-887782 5.1e-06 7_[-2]_73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSKBNBDTGGYBYAGTKGKT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSKBNBDTGGYBYAGTKGKT width=20 seqs=71 chrXVI:856706-857085 ( 57) GGGCGTGTGGCGTAGTCGGT 1 chrIV:410199-410519 ( 70) GGGCGTGTGGCGTAGTCGGT 1 chrXI:219720-220043 ( 64) GGGCGTGTGGCGTAGTCGGT 1 chrVII:738876-739337 ( 66) GGTCTCTTGGCCCAGTTGGT 1 chrXVI:880142-880541 ( 59) GGTCTCTTGGCCCAGTTGGT 1 chrV:551136-551526 ( 58) GGTCTCTTGGCCCAGTTGGT 1 chrXII:1051912-1052363 ( 38) GGTCTCTTGGCCCAGTTGGT 1 chrXVI:819308-819724 ( 63) GGTCTCTTGGCCCAGTTGGT 1 chrXV:300855-301408 ( 16) GGGCGTGTGGTCTAGTGGTA 1 chrXII:687648-688120 ( 79) GGTTTCGTGGTCTAGTCGGT 1 chrX:378178-378278 ( 35) GGTTTCGTGGTCTAGTCGGT 1 chrVIII:85229-85528 ( 24) GGTTTCGTGGTCTAGTCGGT 1 chrVII:794211-794622 ( 51) GGGCACATGGCGCAGTTGGT 1 chrXIII:420428-420874 ( 41) GGTTTCGTGGTCTAGTCGGT 1 chrVII:412102-412567 ( 64) GGTTTCGTGGTCTAGTCGGT 1 chrXI:308070-308370 ( 28) GGTTTCGTGGTCTAGTCGGT 1 chrV:438523-438957 ( 10) GGTTTCGTGGTCTAGTCGGT 1 chrXV:854007-854433 ( 70) GGGCACATGGCGCAGTTGGT 1 chrXI:379489-379826 ( 73) GGTTTCGTGGTCTAGTCGGT 1 chrVII:823272-823664 ( 64) GGTTTCGTGGTCTAGTCGGT 1 chrXII:731892-732266 ( 61) GGGAGTTTGGCCGAGTGGTT 1 chrXII:592372-592807 ( 61) GGGAGTTTGGCCGAGTGGTT 1 chrXIV:96057-96504 ( 63) GGGCGGTTAGTGTAGTGGTT 1 chrXV:110807-111239 ( 41) GGGCGGTTAGTGTAGTGGTT 1 chrVII:779403-779835 ( 47) GGGCGGTTAGTGTAGTGGTT 1 chrV:288275-288720 ( 58) GGCACTATGGCCGAGTGGTT 1 chrIII:227727-228199 ( 29) GGCACTATGGCCGAGTGGTT 1 chrIV:644980-645406 ( 62) GGTCCTATAGTGTAGTGGTT 1 chrIV:802539-803011 ( 58) GGTCCTATAGTGTAGTGGTT 1 chrIV:520767-521127 ( 75) GGTCCTATAGTGTAGTGGTT 1 chrXII:448496-448922 ( 43) GGTCCTATAGTGTAGTGGTT 1 chrXV:113655-113992 ( 29) GCTTCTATGGCCAAGTTGGT 1 chrII:266184-266654 ( 9) GCTTCTATGGCCAAGTTGGT 1 chrXIV:560488-560982 ( 61) GCTTCTATGGCCAAGTTGGT 1 chrX:58940-59040 ( 48) GCTTCTATGGCCAAGTTGGT 1 chrXIV:631724-632122 ( 25) GGGCGTGTGGTCTAGAGGTA 1 chrIII:123429-123909 ( 10) GGGCGTGTGGTCTAGAGGTA 1 chrVII:876183-876679 ( 13) GCCTTGTTGGCGCAATCGGT 1 chrIV:1201515-1202069 ( 8) GCCTTGTTGGCGCAATCGGT 1 chrVIII:466766-467249 ( 33) GCCTCCTTAGCTTAGTGGTA 1 chrII:405653-406193 ( 5) GCTCGCGTGGCGTAATGGCA 1 chrVII:736150-736590 ( 20) GCTCGCGTGGCGTAATGGCA 1 chrIII:142630-142968 ( 3) GCGCAAGTGGTTTAGTGGTA 1 chrIV:83369-83694 ( 67) GCGCAAGTGGTTTAGTGGTA 1 chrVII:845463-845851 ( 42) GCGCAAGTGGTTTAGTGGTA 1 chrIV:992556-993086 ( 61) GCGCAAGTGGTTTAGTGGTA 1 chrXV:281963-282408 ( 29) GCGCAAGTGGTTTAGTGGTA 1 chrIII:127541-127896 ( 48) GACTCCATGGCCAAGTTGGT 1 chrXVI:810404-810905 ( 72) GACTCCATGGCCAAGTTGGT 1 chrII:347397-347827 ( 41) GGAGGGTTGGCCGAGTGGTC 1 chrX:424262-424362 ( 56) GGAGGGTTGGCCGAGTGGTC 1 chrIV:1256927-1257291 ( 1) GCGAAAGTGGTTCAGTGGTT 1 chrXV:709997-710367 ( 69) AGCGCCGTGGCGCAGTGGAA 1 chrXVI:338751-339059 ( 45) AGCGCCGTGGCGCAGTGGAA 1 chrX:517645-517745 ( 60) AGCGCCGTGGCGCAGTGGAA 1 chrXI:326835-327195 ( 8) GCCGCTATGGACCAATGGTT 1 chrII:36222-36555 ( 60) GCGGATTTAGCTCAGTTGGG 1 chrXIII:352079-352462 ( 60) GCGGATTTAGCTCAGTTGGG 1 chrVIII:237692-238148 ( 50) GCGGATTTAGCTCAGTTGGG 1 chrVII:878645-878989 ( 29) GAAGCGGTGGCTCAATGGTA 1 chrVII:287200-287662 ( 55) GAAGCGGTGGCTCAATGGTA 1 chrX:415857-415957 ( 8) GAAGCGGTGGCTCAATGGTA 1 chrIV:1461555-1462058 ( 54) GGTTGTTTGGCCGAGCGGTC 1 chrXI:302659-303196 ( 41) GAAGCGGTGGCTCAATGGTA 1 chrXII:818418-818792 ( 54) GCTCCTCTAGTGCAATGGTT 1 chrXV:622335-622831 ( 52) GATTGTTTGGCCGAAAGGGT 1 chrVII:559972-560189 ( 66) GCTAGCTTGGATCAATTGGT 1 chrIV:359361-359872 ( 11) TCCTTGTTAGCTCAGTTGGT 1 chrVII:115270-115761 ( 23) TCCTTGTTAGCTCAGTTGGT 1 chrV:434357-434791 ( 69) GCCATCTTAGTATAGTGGTT 1 chrXIII:887286-887782 ( 8) TCTGTGTTGGTGTAATTGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSKBNBDTGGYBYAGTKGKT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 45846 bayes= 8.61541 E= 3.7e-147 -293 -1279 237 -293 -171 99 163 -1279 -193 15 80 34 -171 115 15 -6 -106 80 51 -20 -193 104 15 13 -61 -365 125 13 -1279 -1279 -1279 163 -61 -1279 215 -1279 -1279 -1279 249 -1279 -351 170 -1279 29 -451 134 74 -43 -193 99 -66 48 163 -1279 -1279 -1279 -82 -1279 220 -1279 -293 -365 -1279 155 -1279 15 155 -20 -1279 -1279 249 -1279 -293 -265 143 48 -35 -207 -207 104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSKBNBDTGGYBYAGTKGKT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 71 E= 3.7e-147 0.042254 0.000000 0.915493 0.042254 0.098592 0.352113 0.549296 0.000000 0.084507 0.197183 0.309859 0.408451 0.098592 0.394366 0.197183 0.309859 0.154930 0.309859 0.253521 0.281690 0.084507 0.366197 0.197183 0.352113 0.211268 0.014085 0.422535 0.352113 0.000000 0.000000 0.000000 1.000000 0.211268 0.000000 0.788732 0.000000 0.000000 0.000000 1.000000 0.000000 0.028169 0.577465 0.000000 0.394366 0.014085 0.450704 0.295775 0.239437 0.084507 0.352113 0.112676 0.450704 1.000000 0.000000 0.000000 0.000000 0.183099 0.000000 0.816901 0.000000 0.042254 0.014085 0.000000 0.943662 0.000000 0.197183 0.521127 0.281690 0.000000 0.000000 1.000000 0.000000 0.042254 0.028169 0.478873 0.450704 0.253521 0.042254 0.042254 0.661972 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSKBNBDTGGYBYAGTKGKT MEME-2 regular expression -------------------------------------------------------------------------------- G[GC][TG][CT][CTG][CT][GTA]T[GA]G[CT][CGT][TC]AGT[GT]G[GT][TA] -------------------------------------------------------------------------------- Time 599.30 secs. ******************************************************************************** ******************************************************************************** MOTIF HHACAYCCRTACAYM MEME-3 width = 15 sites = 56 llr = 675 E-value = 1.5e-052 ******************************************************************************** -------------------------------------------------------------------------------- Motif HHACAYCCRTACAYM MEME-3 Description -------------------------------------------------------------------------------- Simplified A 32819:1:619:913 pos.-specific C 43191699:2:a146 probability G :11:::::411:::: matrix T 44:::4:1:7:::62 bits 2.5 2.2 * * 2.0 ** * 1.7 * ** * Relative 1.5 ** ** * Entropy 1.2 ***** *** (17.4 bits) 1.0 ****** *** 0.7 ******* ***** 0.5 * ************* 0.2 *************** 0.0 --------------- Multilevel TTACACCCATACATC consensus CC T GC CA sequence AA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HHACAYCCRTACAYM MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chrIV:221977-222278 - 58 1.11e-10 ACGACGGTTA CCACACCCGTACACC CTTATCTCAT chrXII:1064896-1065316 - 37 3.00e-09 ACCACACCCA CCACACCCACACACC ACACACACAC chrV:6227-6525 + 21 3.00e-09 TCACCCACAC CCACACCCACACACC ATGCTCACCT chrXI:666467-666793 - 32 3.00e-09 CACACCCACA CCACACCCACACACC CACAACCCTA chrVI:4492-4952 + 31 3.00e-09 CCCACACACA CCACACCCACACACC CACACCCACA chrIV:59-255 + 9 3.00e-09 CACCACAC CCACACCCACACACC ACACCCACAC chrXIV:6586-6833 + 4 3.00e-09 CAC CCACACCCACACACC CACACCCACA chrVIII:556711-557151 - 9 4.97e-08 CACACCACAC CCACACCCACACACA CCACACCC chrXII:932118-932455 - 39 8.88e-08 ATTACATAGT ATACATCCGTACATC CGTACATCCG chrXV:92705-93467 - 76 1.18e-07 CGTGACACAA CTACATCCGTACACA TGTGACGTTC chrV:110397-110893 + 81 1.99e-07 AATGTGACAA ACACACCCAGACACC TCAAT chrXV:161125-161334 - 67 1.99e-07 TTTCTGGCAA CCAAACCCATACATC GGGATTCCTA chrXV:79820-80054 - 61 2.89e-07 AACTCCATGT AAACACCCGTACATA TTAAATAAGT chrXII:241628-241982 + 50 2.89e-07 ATTTCCCTTT TTACATCCGTACATA TAAAATGTAA chrXII:818826-819173 + 48 2.89e-07 CATACCTTTC CAACATCCGTACATA TTGATTATTG chrXII:922149-922510 + 64 3.23e-07 CGTTTGAAAT TGACACCCGTACATA TTCCAATTCT chrVIII:125957-126272 + 36 3.23e-07 AAAGACGTTA ATGCATCCGTACACC TACATCTTTA chrIV:1062916-1063080 - 9 3.64e-07 TGAAAATAAA TAGCACCCACACATC GCATGATG chrXII:650960-651248 + 84 4.09e-07 ACAATTATCT CAACACCCACACATT TC chrXV:678872-679141 - 54 4.51e-07 TTTTGGGACC ATACATCCGTACATA TTGTGGACCC chrXIII:225364-225668 + 77 5.06e-07 CATCCGTGCA TTACATCCGTACATT CTATTTTTT chrIX:68219-68451 + 63 5.06e-07 TTTGAGTTTA TTACATCCGTACATT ACTAAGATGT chrXIII:754467-754775 - 1 5.62e-07 CAAACATAAA ATACCCCCATACATC chrV:423172-423439 + 15 6.25e-07 TGCTGCATAT TTACCTCCGTACACC TTCTACACCC chrXVI:279877-280373 + 37 6.25e-07 AAGGAGAAGT CCGCATCCGTGCACC TCACAATTCC chrV:53567-53941 + 13 6.94e-07 TCTCTTTGTT TGACACCCACACATA TTTGGTGTTC chrIV:411364-411558 + 22 9.24e-07 GAAACAAATC AAACACCCACACCCC GGGCACCCAA chrII:605742-606112 + 37 1.03e-06 TCTGACAGTT TTACACCTGTACATC TTCACCATCA chrIV:1359423-1359798 + 34 1.24e-06 AAAAGACATT AAACATCCGTACATT ACGCACCCAT chrXV:505145-505474 + 58 1.24e-06 ATGAACCTTA TCACACCCAAACATA TGATATGGTA chrVII:371126-371622 + 29 1.24e-06 AAAAAAATAC CGGCACCCATGCACC TCACACCGCC chrIV:1401261-1401566 + 68 1.36e-06 CCCAATCATT TTCCACCCACACATA TATTACCCTT chrX:651213-651313 + 78 1.48e-06 TTTTATACAA CAACACCCATATACC CATAATTA chrVII:648842-649419 - 69 1.48e-06 AGGACATTTT AAACATCCGTACAAC GAGAACCCAT chrVII:479116-480210 - 20 1.64e-06 TTAGCTTCAC ACACACACACACACC GAAGCTGGTT chrXV:866583-866901 - 64 1.79e-06 AAAACCGGTG TAACACCCATACAAA CCCAGAATGC chrVII:788320-788735 - 52 1.97e-06 ATATTCCTTA CAACATCCGTGCATA CTCTAAACCC chrXV:884012-884265 + 70 2.34e-06 ACATTACGTA ACACATACGTACATC TAAATACGAT chrVIII:382983-383339 - 7 2.57e-06 TAAAAGACAG TGACATCCGAACATC CGATAC chrXIV:495233-495548 - 38 3.05e-06 CGTACACTAT ACACACCCAAACCTC CTTTAAAAAT chrII:332307-332716 + 62 3.31e-06 TATTTCCTTG CTGCACCCATACAAT TCTAAACCCA chrIV:117179-117579 + 39 3.94e-06 TGTATTAATC TCAGACCCATACATA TCTACACCCA chrXV:903929-904146 + 20 4.26e-06 TCTACTTTCG TCCAATCCATACATC GCCCAATTAG chrVII:438620-438879 - 59 4.62e-06 AAAAAGACCT TACCATCCATACATT TTGGAACGTT chrIV:556579-557075 - 41 4.62e-06 TCTATTGATG TTACACCTGGACACC CCTTTTCTGG chrXIII:124392-124679 - 28 5.43e-06 AAGACTGCTA TTAAATCCGTACATT ATTAAAATGT chrXI:618822-619160 + 40 5.43e-06 AATGGAAAGA TTGCACCCAGACAAC TACACAAATC chrXII:1028210-1028520 + 81 5.88e-06 AAAGACAAAA TATCACCCATGCACC AAAAT chrVII:599738-600234 - 22 6.85e-06 AAAACGACGG CCACACCAATACCTC TTTGATTCCA chrIV:308052-308388 + 52 7.37e-06 ACATTTCCTG TTACATCCTTACATA TATGCAGGCA chrV:354663-355327 - 84 7.99e-06 TC CTAACCCCATACATA CACTGTATGA chrXII:257766-257993 + 54 1.07e-05 TCGTACGCAC ATACATACATACATA TAGGTACATA chrXV:253727-254223 - 53 1.15e-05 ACAAAACTTT TTTAATCCGTACACC GCGCGTATAA chrIX:316139-316546 + 58 1.15e-05 GTTTTCAGAC TAGAACCCATACATT ATTTTACAAA chrXVI:406253-406795 + 15 1.73e-05 GTGAGGTAAG ATCCATCCATACCTT AGCAAATATG chrVII:76226-76722 - 80 2.72e-05 GTGTTC CTACATCTATATACC ACCATGCCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HHACAYCCRTACAYM MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:221977-222278 1.1e-10 57_[-3]_28 chrXII:1064896-1065316 3e-09 36_[-3]_49 chrV:6227-6525 3e-09 20_[+3]_65 chrXI:666467-666793 3e-09 31_[-3]_54 chrVI:4492-4952 3e-09 30_[+3]_55 chrIV:59-255 3e-09 8_[+3]_77 chrXIV:6586-6833 3e-09 3_[+3]_82 chrVIII:556711-557151 5e-08 8_[-3]_77 chrXII:932118-932455 8.9e-08 38_[-3]_47 chrXV:92705-93467 1.2e-07 75_[-3]_10 chrV:110397-110893 2e-07 80_[+3]_5 chrXV:161125-161334 2e-07 66_[-3]_19 chrXV:79820-80054 2.9e-07 60_[-3]_25 chrXII:241628-241982 2.9e-07 49_[+3]_36 chrXII:818826-819173 2.9e-07 47_[+3]_38 chrXII:922149-922510 3.2e-07 63_[+3]_22 chrVIII:125957-126272 3.2e-07 35_[+3]_50 chrIV:1062916-1063080 3.6e-07 8_[-3]_77 chrXII:650960-651248 4.1e-07 83_[+3]_2 chrXV:678872-679141 4.5e-07 53_[-3]_32 chrXIII:225364-225668 5.1e-07 76_[+3]_9 chrIX:68219-68451 5.1e-07 62_[+3]_23 chrXIII:754467-754775 5.6e-07 [-3]_85 chrV:423172-423439 6.2e-07 14_[+3]_71 chrXVI:279877-280373 6.2e-07 36_[+3]_49 chrV:53567-53941 6.9e-07 12_[+3]_73 chrIV:411364-411558 9.2e-07 21_[+3]_64 chrII:605742-606112 1e-06 36_[+3]_49 chrIV:1359423-1359798 1.2e-06 33_[+3]_52 chrXV:505145-505474 1.2e-06 57_[+3]_28 chrVII:371126-371622 1.2e-06 28_[+3]_57 chrIV:1401261-1401566 1.4e-06 67_[+3]_18 chrX:651213-651313 1.5e-06 77_[+3]_8 chrVII:648842-649419 1.5e-06 68_[-3]_17 chrVII:479116-480210 1.6e-06 19_[-3]_66 chrXV:866583-866901 1.8e-06 63_[-3]_22 chrVII:788320-788735 2e-06 51_[-3]_34 chrXV:884012-884265 2.3e-06 69_[+3]_16 chrVIII:382983-383339 2.6e-06 6_[-3]_79 chrXIV:495233-495548 3e-06 37_[-3]_48 chrII:332307-332716 3.3e-06 61_[+3]_24 chrIV:117179-117579 3.9e-06 38_[+3]_47 chrXV:903929-904146 4.3e-06 19_[+3]_66 chrVII:438620-438879 4.6e-06 58_[-3]_27 chrIV:556579-557075 4.6e-06 40_[-3]_45 chrXIII:124392-124679 5.4e-06 27_[-3]_58 chrXI:618822-619160 5.4e-06 39_[+3]_46 chrXII:1028210-1028520 5.9e-06 80_[+3]_5 chrVII:599738-600234 6.9e-06 21_[-3]_64 chrIV:308052-308388 7.4e-06 51_[+3]_34 chrV:354663-355327 8e-06 83_[-3]_2 chrXII:257766-257993 1.1e-05 53_[+3]_32 chrXV:253727-254223 1.1e-05 52_[-3]_33 chrIX:316139-316546 1.1e-05 57_[+3]_28 chrXVI:406253-406795 1.7e-05 14_[+3]_71 chrVII:76226-76722 2.7e-05 79_[-3]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HHACAYCCRTACAYM MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF HHACAYCCRTACAYM width=15 seqs=56 chrIV:221977-222278 ( 58) CCACACCCGTACACC 1 chrXII:1064896-1065316 ( 37) CCACACCCACACACC 1 chrV:6227-6525 ( 21) CCACACCCACACACC 1 chrXI:666467-666793 ( 32) CCACACCCACACACC 1 chrVI:4492-4952 ( 31) CCACACCCACACACC 1 chrIV:59-255 ( 9) CCACACCCACACACC 1 chrXIV:6586-6833 ( 4) CCACACCCACACACC 1 chrVIII:556711-557151 ( 9) CCACACCCACACACA 1 chrXII:932118-932455 ( 39) ATACATCCGTACATC 1 chrXV:92705-93467 ( 76) CTACATCCGTACACA 1 chrV:110397-110893 ( 81) ACACACCCAGACACC 1 chrXV:161125-161334 ( 67) CCAAACCCATACATC 1 chrXV:79820-80054 ( 61) AAACACCCGTACATA 1 chrXII:241628-241982 ( 50) TTACATCCGTACATA 1 chrXII:818826-819173 ( 48) CAACATCCGTACATA 1 chrXII:922149-922510 ( 64) TGACACCCGTACATA 1 chrVIII:125957-126272 ( 36) ATGCATCCGTACACC 1 chrIV:1062916-1063080 ( 9) TAGCACCCACACATC 1 chrXII:650960-651248 ( 84) CAACACCCACACATT 1 chrXV:678872-679141 ( 54) ATACATCCGTACATA 1 chrXIII:225364-225668 ( 77) TTACATCCGTACATT 1 chrIX:68219-68451 ( 63) TTACATCCGTACATT 1 chrXIII:754467-754775 ( 1) ATACCCCCATACATC 1 chrV:423172-423439 ( 15) TTACCTCCGTACACC 1 chrXVI:279877-280373 ( 37) CCGCATCCGTGCACC 1 chrV:53567-53941 ( 13) TGACACCCACACATA 1 chrIV:411364-411558 ( 22) AAACACCCACACCCC 1 chrII:605742-606112 ( 37) TTACACCTGTACATC 1 chrIV:1359423-1359798 ( 34) AAACATCCGTACATT 1 chrXV:505145-505474 ( 58) TCACACCCAAACATA 1 chrVII:371126-371622 ( 29) CGGCACCCATGCACC 1 chrIV:1401261-1401566 ( 68) TTCCACCCACACATA 1 chrX:651213-651313 ( 78) CAACACCCATATACC 1 chrVII:648842-649419 ( 69) AAACATCCGTACAAC 1 chrVII:479116-480210 ( 20) ACACACACACACACC 1 chrXV:866583-866901 ( 64) TAACACCCATACAAA 1 chrVII:788320-788735 ( 52) CAACATCCGTGCATA 1 chrXV:884012-884265 ( 70) ACACATACGTACATC 1 chrVIII:382983-383339 ( 7) TGACATCCGAACATC 1 chrXIV:495233-495548 ( 38) ACACACCCAAACCTC 1 chrII:332307-332716 ( 62) CTGCACCCATACAAT 1 chrIV:117179-117579 ( 39) TCAGACCCATACATA 1 chrXV:903929-904146 ( 20) TCCAATCCATACATC 1 chrVII:438620-438879 ( 59) TACCATCCATACATT 1 chrIV:556579-557075 ( 41) TTACACCTGGACACC 1 chrXIII:124392-124679 ( 28) TTAAATCCGTACATT 1 chrXI:618822-619160 ( 40) TTGCACCCAGACAAC 1 chrXII:1028210-1028520 ( 81) TATCACCCATGCACC 1 chrVII:599738-600234 ( 22) CCACACCAATACCTC 1 chrIV:308052-308388 ( 52) TTACATCCTTACATA 1 chrV:354663-355327 ( 84) CTAACCCCATACATA 1 chrXII:257766-257993 ( 54) ATACATACATACATA 1 chrXV:253727-254223 ( 53) TTTAATCCGTACACC 1 chrIX:316139-316546 ( 58) TAGAACCCATACATT 1 chrXVI:406253-406795 ( 15) ATCCATCCATACCTT 1 chrVII:76226-76722 ( 80) CTACATCTATATACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HHACAYCCRTACAYM MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 48676 bayes= 10.9852 E= 1.5e-052 -37 101 -1245 28 -47 86 -131 22 125 -131 -51 -317 -159 230 -331 -1245 155 -173 -1245 -1245 -1245 173 -1245 35 -259 241 -1245 -1245 -417 239 -1245 -259 87 -1245 115 -417 -259 39 -173 103 153 -1245 -131 -1245 -1245 244 -1245 -317 153 -131 -1245 -1245 -217 108 -1245 78 -17 164 -1245 -100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HHACAYCCRTACAYM MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 56 E= 1.5e-052 0.250000 0.357143 0.000000 0.392857 0.232143 0.321429 0.071429 0.375000 0.767857 0.071429 0.125000 0.035714 0.107143 0.875000 0.017857 0.000000 0.946429 0.053571 0.000000 0.000000 0.000000 0.589286 0.000000 0.410714 0.053571 0.946429 0.000000 0.000000 0.017857 0.928571 0.000000 0.053571 0.589286 0.000000 0.392857 0.017857 0.053571 0.232143 0.053571 0.660714 0.928571 0.000000 0.071429 0.000000 0.000000 0.964286 0.000000 0.035714 0.928571 0.071429 0.000000 0.000000 0.071429 0.375000 0.000000 0.553571 0.285714 0.553571 0.000000 0.160714 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HHACAYCCRTACAYM MEME-3 regular expression -------------------------------------------------------------------------------- [TCA][TCA]ACA[CT]CC[AG][TC]ACA[TC][CA] -------------------------------------------------------------------------------- Time 880.45 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:823272-823664 2.12e-06 63_[+2(1.92e-09)]_17 chrIV:555372-555709 9.80e-01 100 chrII:167311-167491 4.18e-01 100 chrV:77843-78142 6.59e-01 100 chrXIII:631941-632437 4.60e-01 100 chrXVI:55880-56554 2.72e-05 9_[-1(1.67e-08)]_61 chrXIV:546914-547376 2.42e-07 63_[+1(7.05e-11)]_7 chrVII:730949-731464 5.58e-05 16_[+1(3.86e-09)]_54 chrII:378446-378637 8.43e-01 100 chrXI:219720-220043 3.79e-07 63_[+2(7.66e-11)]_17 chrIV:987410-987746 2.14e-01 100 chrV:268045-268316 3.74e-01 100 chrXVI:819308-819724 6.72e-06 62_[+2(2.98e-10)]_18 chrV:441801-442626 5.31e-01 100 chrVII:599738-600234 1.00e-03 21_[-3(6.85e-06)]_64 chrXI:458387-458917 3.51e-01 100 chrVII:802094-802287 6.20e-01 100 chrXVI:689367-689915 6.53e-01 100 chrXII:693881-694377 2.28e-01 100 chrXVI:172880-173706 6.52e-01 100 chrVI:82857-83487 4.79e-01 100 chrVI:137253-137739 2.09e-05 47_[-1(3.86e-09)]_23 chrVII:788320-788735 2.68e-03 51_[-3(1.97e-06)]_34 chrXIII:302568-303064 5.17e-01 100 chrXIV:720797-721293 9.76e-01 100 chrXIV:723008-723332 7.15e-01 100 chrXVI:433922-434418 6.71e-01 100 chrVIII:115332-115630 4.06e-01 100 chrXVI:700362-700732 9.81e-01 100 chrIV:1449788-1450284 5.09e-02 100 chrXV:621344-621816 6.60e-01 100 chrXI:490741-491083 6.74e-01 100 chrV:151645-152141 6.33e-01 100 chrXI:379489-379826 2.24e-05 72_[+2(1.92e-09)]_8 chrXV:854007-854433 1.77e-14 24_[-1(4.35e-12)]_15_[-2(1.92e-09)]_\ 11 chrVII:547361-547857 5.53e-01 100 chrX:424262-424362 5.15e-04 55_[-2(2.08e-07)]_25 chrXV:725039-725535 9.33e-01 100 chrXVI:653923-654452 9.04e-02 100 chrXI:106801-107297 6.46e-01 100 chrXIII:549946-550229 9.28e-01 100 chrXIII:667125-667621 3.85e-02 7_[-1(3.27e-05)]_63 chrXII:490555-490861 1.60e-01 100 chrXV:882234-882730 4.80e-01 100 chrV:60895-62175 7.39e-01 100 chrXII:124750-125246 8.00e-01 100 chrV:268929-269425 8.36e-01 100 chrXIII:164150-164370 4.67e-01 100 chrXIV:499384-499788 9.70e-01 100 chrIV:238707-239203 6.11e-01 100 chrXII:127252-127748 7.72e-01 100 chrVII:115270-115761 8.26e-03 22_[+2(2.93e-06)]_58 chrXVI:770640-771136 9.13e-01 100 chrXII:720439-720651 3.50e-01 100 chrV:167487-167824 3.48e-01 100 chrXIII:733205-733502 2.52e-01 100 chrIX:68219-68451 1.51e-03 62_[+3(5.06e-07)]_23 chrXII:650960-651248 3.22e-04 83_[+3(4.09e-07)]_2 chrXV:93873-94361 8.36e-01 100 chrXIV:575292-575760 3.54e-01 100 chrVII:641785-641996 6.97e-01 100 chrXI:30-186 1.83e-02 100 chrIV:507623-507900 9.76e-01 100 chrXII:898944-899604 2.06e-01 100 chrXI:618822-619160 5.48e-03 39_[+3(5.43e-06)]_15_[-3(1.23e-05)]_\ 16 chrX:517645-517745 3.05e-09 15_[-1(1.33e-09)]_14_[-2(4.25e-07)]_\ 21 chrXII:820015-820511 3.98e-01 100 chrXII:710151-710647 5.81e-01 100 chrXVI:378001-378316 9.00e-01 100 chrIV:472887-473383 8.20e-01 100 chrVI:83863-84461 3.07e-01 100 chrXIII:664504-664752 9.01e-01 100 chrXIII:887706-888029 2.00e-01 100 chrV:313936-314432 9.63e-01 100 chrXII:448496-448922 2.62e-06 42_[-2(3.53e-08)]_38 chrVII:779403-779835 4.31e-05 46_[+2(1.70e-08)]_34 chrXV:304985-305481 2.47e-01 100 chrVII:440453-441260 2.17e-02 100 chrXII:638378-639359 3.88e-01 100 chrII:604192-604608 7.72e-01 100 chrIV:525157-525653 2.30e-01 100 chrXII:950881-951360 7.79e-01 100 chrXVI:516250-516746 5.14e-01 100 chrXII:1019029-1019330 6.61e-02 13_[-3(3.70e-05)]_72 chrXV:903929-904146 8.04e-03 19_[+3(4.26e-06)]_66 chrXVI:280617-281273 7.73e-01 100 chrVIII:386662-386875 1.29e-01 100 chrXVI:308524-308648 9.98e-01 100 chrXIV:6586-6833 2.75e-05 3_[+3(3.00e-09)]_82 chrXV:109980-110429 5.90e-01 100 chrXV:884012-884265 1.45e-02 69_[+3(2.34e-06)]_16 chrXIV:442846-443326 4.15e-01 100 chrXV:606214-606468 9.79e-01 100 chrXV:161125-161334 6.45e-04 66_[-3(1.99e-07)]_19 chrVIII:361870-362155 3.34e-01 100 chrVII:959187-959683 7.82e-01 100 chrXII:201787-202093 9.55e-01 100 chrXVI:736793-737289 1.57e-01 100 chrXII:818826-819173 3.37e-04 47_[+3(2.89e-07)]_38 chrX:204530-204630 1.20e-01 100 chrVII:599192-599392 3.71e-01 100 chrX:265159-265259 4.25e-01 100 chrXVI:207728-208224 8.03e-01 100 chrVIII:150507-151003 5.01e-01 100 chrX:58940-59040 9.10e-12 2_[-1(2.24e-11)]_15_[-2(5.55e-08)]_\ 33 chrXIII:761805-762283 5.11e-01 100 chrXII:592568-593064 2.98e-01 100 chrIV:218420-218673 1.46e-01 100 chrXVI:804387-804883 7.74e-01 100 chrXVI:736593-737089 7.48e-01 100 chrXVI:404807-405640 9.00e-01 100 chrXIV:174289-174722 5.82e-01 100 chrV:438523-438957 7.26e-12 9_[+2(1.92e-09)]_16_[+1(5.17e-10)]_\ 25 chrIV:1305447-1305949 3.60e-01 100 chrXVI:575229-575725 6.27e-01 100 chrVII:785557-786053 4.72e-01 100 chrXI:308070-308370 7.41e-06 27_[-2(1.92e-09)]_53 chrXVI:277285-277781 1.71e-02 21_[+2(2.49e-05)]_59 chrVII:726796-727095 9.63e-01 100 chrXIV:352490-352810 3.66e-01 100 chrXII:368569-368740 8.16e-01 100 chrXIII:504699-505264 3.81e-01 100 chrII:89276-89624 8.38e-02 42_[-3(8.59e-05)]_43 chrXV:678534-678990 9.82e-01 100 chrXV:256089-256585 2.69e-01 100 chrXII:426961-427454 1.96e-06 8_[+1(1.15e-10)]_62 chrXI:112419-112915 9.49e-01 100 chrXII:793725-795525 9.75e-01 100 chrVII:727676-728088 7.11e-01 100 chrXIII:463327-463921 8.88e-07 13_[+1(1.15e-10)]_22_[+1(9.33e-05)]_\ 5 chrXI:158226-158753 9.76e-01 100 chrVII:786871-787367 5.60e-01 100 chrIV:359361-359872 2.86e-10 10_[+2(2.93e-06)]_38_[+1(1.83e-10)]_\ 2 chrXIII:168588-169111 1.23e-05 46_[+1(2.94e-09)]_24 chrIV:770151-770340 9.97e-01 100 chrVIII:125957-126272 2.25e-03 35_[+3(3.23e-07)]_50 chrVIII:148522-148862 7.83e-01 100 chrXVI:279877-280373 3.15e-03 36_[+3(6.25e-07)]_49 chrVII:366142-366800 1.29e-01 100 chrIV:428399-428692 6.53e-01 100 chrXIV:179376-179872 7.92e-01 100 chrXII:898025-898275 2.94e-01 100 chrVI:222968-223224 9.96e-01 100 chrVII:185477-185961 1.78e-09 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9.61e-01 100 chrVII:400239-400516 5.96e-01 100 chrXII:687648-688120 7.26e-12 32_[-1(5.17e-10)]_16_[-2(1.92e-09)]_\ 2 chrXII:371033-371319 5.08e-01 100 chrX:647278-647378 9.78e-01 100 chrXIII:300556-301052 9.97e-01 100 chrXV:505145-505474 2.99e-03 32_[+3(1.13e-06)]_10_[+3(1.24e-06)]_\ 28 chrIV:644980-645406 4.46e-13 17_[-1(2.24e-11)]_14_[-2(3.53e-08)]_\ 19 chrX:139182-139282 7.91e-01 100 chrII:567489-567985 5.10e-01 100 chrV:487161-487564 7.79e-12 26_[-1(9.14e-15)]_44 chrXV:900878-901118 9.87e-01 100 chrXII:257766-257993 1.72e-02 53_[+3(1.07e-05)]_32 chrXI:461280-461776 1.34e-01 100 chrXIII:222581-222891 7.37e-01 100 chrII:607238-607380 2.26e-01 100 chrVI:64030-64482 6.51e-01 100 chrVII:738876-739337 1.41e-06 65_[+2(2.98e-10)]_15 chrII:417708-418204 1.45e-01 21_[-2(7.06e-05)]_59 chrXIV:569703-570059 1.15e-10 43_[-1(1.65e-14)]_27 chrXIV:495233-495548 1.17e-02 37_[-3(3.05e-06)]_2_[-3(1.62e-05)]_\ 31 chrVII:498011-498507 3.16e-01 100 chrXI:46359-46727 6.81e-01 100 chrII:299882-300378 8.72e-01 100 chrVII:845463-845851 6.26e-04 41_[+2(1.72e-07)]_39 chrIV:1359423-1359798 3.84e-03 33_[+3(1.24e-06)]_52 chrXVI:577193-577689 4.09e-01 100 chrXIV:160219-160715 2.16e-01 100 chrXVI:785749-785879 2.49e-01 100 chrX:531605-531705 9.76e-12 [+2(1.72e-07)]_13_[+1(7.11e-12)]_37 chrIII:127541-127896 9.88e-04 47_[+2(1.89e-07)]_33 chrXII:903408-903750 9.24e-01 100 chrX:354064-354164 7.52e-06 23_[+1(2.94e-09)]_47 chrXI:551360-551798 8.33e-01 100 chrV:288275-288720 1.30e-04 57_[-2(2.47e-08)]_23 chrV:321961-322443 2.98e-01 100 chrXIII:626089-626419 8.22e-02 100 chrVII:481765-482527 3.64e-01 100 chrXII:254967-255204 3.42e-01 100 chrXIII:124392-124679 2.58e-02 7_[+3(6.33e-06)]_5_[-3(5.43e-06)]_\ 58 chrXIV:104621-105171 2.65e-01 100 chrIX:258344-258840 4.43e-01 100 chrXII:1064896-1065316 3.81e-06 3_[-3(3.00e-09)]_3_[-3(1.64e-06)]_\ [-3(3.00e-09)]_11_[-3(5.62e-07)]_3_[-3(5.62e-07)]_5 chrXVI:622325-622822 1.07e-05 24_[-1(1.33e-09)]_46 chrXIII:253259-253755 2.01e-01 100 chrXVI:745561-745788 4.85e-01 100 chrXII:198437-198910 9.52e-01 100 chrVII:311852-312270 7.72e-01 100 chrXII:202483-202829 3.37e-02 100 chrII:605742-606112 3.80e-04 36_[+3(1.03e-06)]_49 chrIV:1201515-1202069 6.92e-14 7_[+2(8.53e-08)]_15_[+1(3.62e-13)]_\ 28 chrVI:149481-149977 8.03e-01 100 chrXIV:559105-559356 4.05e-01 100 chrII:235772-236138 5.09e-01 100 chrXI:202831-203315 1.74e-09 10_[+1(3.62e-13)]_60 chrXVI:376860-377356 3.15e-01 100 chrII:378446-378942 7.39e-01 100 chrXII:131310-131806 9.26e-01 100 chrX:227788-227888 4.12e-01 100 chrXV:159475-159971 4.30e-03 68_[+1(4.08e-05)]_2 chrVII:401288-401779 3.39e-10 51_[-1(9.14e-15)]_19 chrIV:308052-308388 7.77e-03 31_[+3(9.53e-05)]_5_[+3(7.37e-06)]_\ 34 chrXV:896540-896670 9.85e-01 100 chrX:120271-120371 6.54e-01 100 chrXIV:628568-628785 9.91e-01 100 chrVIII:410834-411716 9.05e-01 100 chrVII:328364-328918 2.70e-10 25_[+1(9.14e-15)]_45 chrVIII:107475-107971 3.94e-01 100 chrXII:1028210-1028520 1.14e-02 80_[+3(5.88e-06)]_5 chrVII:876183-876679 6.92e-14 12_[+2(8.53e-08)]_15_[+1(3.62e-13)]_\ 23 chrIV:556368-556781 5.71e-01 100 chrX:651213-651313 3.59e-03 77_[+3(1.48e-06)]_8 chrIV:83369-83694 1.01e-04 66_[+2(1.72e-07)]_14 chrIII:142630-142968 4.49e-05 2_[-2(1.72e-07)]_78 chrIV:521577-521810 8.35e-01 100 chrXIV:379156-379652 1.58e-01 100 chrIV:433995-434543 1.67e-07 52_[-1(2.24e-11)]_18 chrIV:1150495-1151147 4.09e-01 100 chrII:350622-350967 8.96e-01 100 chrXI:519295-519524 8.98e-01 100 chrXI:140731-141333 2.70e-10 43_[-1(9.14e-15)]_27 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************