Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/BY4741--MIG2.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.014768 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/BY4741--MIG2.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.077091 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/BY4741--MIG2.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.098858 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.042836 Invoking: fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/seqs-sampled Finished invoke: name: sample_seqs status: 0 time: 0.093165 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/BY4741--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/background Finished invoke: name: bg status: 0 time: 0.036268 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 891.5028 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/seqs-shuffled Finished invoke: name: dreme status: 0 time: 76.59218 Invoking: centrimo -seqlen 380 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/BY4741--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.201268 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.61743 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/background -primary WAMCCACTRSGCCAHRNRVSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/BY4741--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.427017 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/background -primary TAAYCRDRAGGTCMBSGGTTCGAHYCCSVK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/BY4741--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.367724 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/BY4741--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.195165 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/background -primary BTAAGGCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/BY4741--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.215247 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/background -primary AYCCGTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/BY4741--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.178382 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/background -primary CGTTGCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/BY4741--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.220568 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/background -primary TAKCTCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/BY4741--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.211245 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/background -primary ACGGTR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/BY4741--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.246979 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/background -primary AGAAR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/BY4741--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.320959 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/background -primary ACCAGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/BY4741--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 0.22075 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/background --motif WAMCCACTRSGCCAHRNRVSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/BY4741--MIG2.fa Finished invoke: name: fimo1 status: 0 time: 0.264105 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/background --motif TAAYCRDRAGGTCMBSGGTTCGAHYCCSVK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/BY4741--MIG2.fa Finished invoke: name: fimo2 status: 0 time: 0.263175 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/BY4741--MIG2.fa Finished invoke: name: fimo3 status: 0 time: 0.170935 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/background --motif BTAAGGCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/BY4741--MIG2.fa Finished invoke: name: fimo4 status: 0 time: 0.170698 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/background --motif AYCCGTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/BY4741--MIG2.fa Finished invoke: name: fimo5 status: 0 time: 0.164161 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/background --motif CGTTGCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/BY4741--MIG2.fa Finished invoke: name: fimo6 status: 0 time: 0.17146 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/background --motif TAKCTCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/BY4741--MIG2.fa Finished invoke: name: fimo7 status: 0 time: 0.169764 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/background --motif ACGGTR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/BY4741--MIG2.fa Finished invoke: name: fimo8 status: 0 time: 0.155525 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/background --motif AGAAR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/BY4741--MIG2.fa Finished invoke: name: fimo9 status: 0 time: 0.1505 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/background --motif ACCAGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/BY4741--MIG2.fa Finished invoke: name: fimo10 status: 0 time: 0.162379 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/summary.tsv Finished invoke: name: summary status: 0 time: 0.220159 Done