******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:354742-355260 1.0000 100 chrVIII:455645-455922 1.0000 100 chrIV:221331-221711 1.0000 100 chrXIII:306467-307124 1.0000 100 chrV:61043-62124 1.0000 100 chrV:305782-306168 1.0000 100 chrX:424300-424400 1.0000 100 chrIV:1269172-1269552 1.0000 100 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100 chrXIV:88957-89719 1.0000 100 chrXVI:689402-689845 1.0000 100 chrXVI:572099-572478 1.0000 100 chrVIII:296898-297194 1.0000 100 chrII:405700-406019 1.0000 100 chrXIII:183826-184129 1.0000 100 chrXII:656823-657156 1.0000 100 chrXII:810146-810526 1.0000 100 chrXVI:769022-769475 1.0000 100 chrXIII:420461-420825 1.0000 100 chrXIII:888710-889090 1.0000 100 chrXV:161920-162300 1.0000 100 chrIV:1278673-1279039 1.0000 100 chrXII:214804-215132 1.0000 100 chrIV:568712-569053 1.0000 100 chrXIV:576942-577137 1.0000 100 chrIV:1489150-1489588 1.0000 100 chrIII:123438-123797 1.0000 100 chrXIII:837746-838109 1.0000 100 chrXV:407672-408079 1.0000 100 chrIV:721758-722164 1.0000 100 chrVIII:126631-126809 1.0000 100 chrV:69104-69334 1.0000 100 chrXIV:771909-772408 1.0000 100 chrXI:46656-46952 1.0000 100 chrII:375260-375406 1.0000 100 chrII:301251-301663 1.0000 100 chrXI:100321-100701 1.0000 100 chrIX:316174-316547 1.0000 100 chrXII:592434-592788 1.0000 100 chrVIII:5157-5537 1.0000 100 chrVII:766143-766483 1.0000 100 chrIII:121510-121890 1.0000 100 chrVII:727854-728052 1.0000 100 chrXV:80310-80690 1.0000 100 chrIV:1156416-1156589 1.0000 100 chrXVI:453409-453789 1.0000 100 chrV:27727-28107 1.0000 100 chrXV:416802-417182 1.0000 100 chrX:652203-652303 1.0000 100 chrVI:157791-158169 1.0000 100 chrIV:1345352-1345678 1.0000 100 chrVII:23903-24283 1.0000 100 chrV:396242-396510 1.0000 100 chrIV:1270007-1270181 1.0000 100 chrXII:794149-795189 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 566 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 56595 N= 566 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.294 C 0.206 G 0.206 T 0.294 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG2/background): A 0.304 C 0.196 G 0.196 T 0.304 ******************************************************************************** ******************************************************************************** MOTIF WAMCCACTRSGCCAHRNRVSC MEME-1 width = 21 sites = 107 llr = 1551 E-value = 4.0e-258 ******************************************************************************** -------------------------------------------------------------------------------- Motif WAMCCACTRSGCCAHRNRVSC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 465:29::423::a442341: pos.-specific C 1:4a6:9:23:a7:413135a probability G :1::1:::357::::33434: matrix T 63::::1a1:::3:2121:1: bits 2.3 * * 2.1 * * * 1.9 * * * * 1.6 * ** * * * Relative 1.4 * *** *** * Entropy 1.2 * *** **** * (20.9 bits) 0.9 * *** **** * 0.7 ****** ***** ** 0.5 * ****** ****** *** 0.2 ********************* 0.0 --------------------- Multilevel TAACCACTAGGCCAAACGACC consensus ATC A GCA T CGGAGG sequence T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAMCCACTRSGCCAHRNRVSC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXII:656823-657156 + 47 3.91e-10 GGGAGCGCGC TACCGACTACGCCACACGCCC AATTTTCTTG chrIV:410215-410565 - 39 3.91e-10 GGGAGCGCGC TACCGACTACGCCACACGCCC AATATTTGTA chrVII:774184-774506 - 54 3.91e-10 GGGAGCGCGC TACCGACTACGCCACACGCCC AATTAATTGA chrXVI:856730-857071 - 52 3.91e-10 GGGAGCGCGC TACCGACTACGCCACACGCCC GAATCTTGTT chrX:197216-197316 + 16 3.91e-10 GGGAGCGCGC TACCGACTACGCCACACGCCC TAATATTATT chrXIII:195946-196394 + 30 1.09e-09 AGCGAGAATC ATACCACTAGACCACACGCCC TTGTGAACTT chrXII:92374-92755 - 34 1.09e-09 AGCGAGAATC ATACCACTAGACCACACGCCC TTATTAACTT chrVIII:388782-389169 + 50 1.09e-09 AGCGAGAATC ATACCACTAGACCACACGCCC ATGTATCTGT chrXV:300873-301360 - 31 1.09e-09 AGCGAGAATC ATACCACTAGACCACACGCCC GATCTTTTCT chrI:138985-139349 - 35 1.09e-09 AGCGAGAATC ATACCACTAGACCACACGCCC GTACTAATTG chrXIV:567933-568345 - 26 1.09e-09 AGCGAGAATC ATACCACTAGACCACACGCCC GATTATTTTA chrVI:101227-101581 - 22 1.09e-09 AGCGAGAATC ATACCACTAGACCACACGCCC GAATTATTGT chrXII:592434-592788 + 38 1.59e-09 CTGACGCCTT AAACCACTCGGCCAAACTCCC ATTGTATGTT chrXII:731912-732288 - 40 1.59e-09 CTGACGCCTT AAACCACTCGGCCAAACTCCC ATTGTATGTT chrX:617732-617832 - 67 1.59e-09 CTGACGCCTT AAACCACTCGGCCAAACTCCC ATTGTTTGTT chrV:443137-443462 + 6 1.90e-09 GCCTT AACCAACTGGGCCAAGAGACC AAATTTTAAT chrIX:183323-183674 + 45 1.90e-09 ACGGTGCCTT AACCAACTGGGCCAAGAGACC AGGAATTTGT chrIV:667870-668246 + 52 1.90e-09 ACGGTGCCTT AACCAACTGGGCCAAGAGACC AATTTGGATC chrV:551184-551514 + 39 1.90e-09 ACGGTGCCTT AACCAACTGGGCCAAGAGACC TGTAATCTGT chrVII:738932-739341 - 36 1.90e-09 ACGGTGCCTT AACCAACTGGGCCAAGAGACC TATTTTTTTC chrXI:46656-46952 + 32 3.79e-09 GTGCGATGCC TTACCACTTGGCCAAAAGGGC TGAGTAATTT chrV:86452-86785 - 36 3.79e-09 TCTTTCGCCT TAACCACTCGGCCAAGTTGCC ATAACTCATT chrIV:884230-884582 - 5 3.79e-09 CACGAAGCTC TAACCACTGAGCTACACGAGC ATTT chrI:182412-182778 + 38 3.79e-09 TCTTTCGCCT TAACCACTCGGCCAAGTTGCC AAAATTGTAT chrXIII:259054-259416 + 34 3.79e-09 TCTTTCGCCT TAACCACTCGGCCAAGTTGCC ATACTAACTT chrIV:980886-981232 + 26 3.79e-09 TCTTTCGCCT TAACCACTCGGCCAAGTTGCC TCAATTTACA chrX:523894-523994 + 42 3.79e-09 TCTTTCGCCT TAACCACTCGGCCAAGTTGCC TTTAATCTCT chrVIII:132935-133316 + 12 3.79e-09 TCTTTCGCCT TAACCACTCGGCCAAGTTGCC ACTTATTATA chrXII:214804-215132 + 17 6.11e-09 GGAAGCGCGC TACCAACTGCGCCATGTGCCC TAAAACGCGT chrV:311889-312264 + 49 6.11e-09 GGAAGCGCGC TACCAACTGCGCCATGTGCCC AGAATTTCTG chrXV:274500-274908 - 19 1.11e-08 GGCATCGCCT TAACCACTCGGCCACTGGGAC ACGATTACTT chrIV:1150681-1151106 + 78 1.11e-08 GGCATCGCCT TAACCACTCGGCCACTGGGAC TG chrVI:191386-191787 + 57 1.11e-08 GGCATCGCCT TAACCACTCGGCCACTGGGAC AGAATCTCTT chrXVI:435782-436154 + 26 1.27e-08 ATCTGCTGCG CTACCACTGCGCCATACGAGC TTTTGTTGTA chrVII:706985-707350 + 42 1.27e-08 ATCTGCTGCG CTACCACTGCGCCATACGAGC TTGATTTTCT chrXVI:775684-775991 + 29 1.27e-08 ATCTGCTGCG CTACCACTGCGCCATACGAGC TTTTGAATTA chrXIV:104645-105060 - 3 1.68e-08 TGTGGCGCCT TACCAACTTGGCCATAGAAGC TC chrXV:353944-354290 + 26 1.68e-08 TGTGGCGCCT TACCAACTTGGCCATAGAAGC AGTAAACCGT chrVIII:116010-116348 + 30 1.68e-08 TGTGGCGCCT TACCAACTTGGCCATAGAAGC TCTAATAGTG chrXV:113624-113947 - 67 1.68e-08 TGTGGCGCCT TACCAACTTGGCCATAGAAGC TAAATCTCTG chrXIV:560566-560949 + 38 1.68e-08 TGTGGCGCCT TACCAACTTGGCCATAGAAGC CCGTTATTAC chrIV:434065-434509 + 79 1.68e-08 TGTGGCGCCT TACCAACTTGGCCATAGAAGC T chrXIV:96103-96489 + 46 2.19e-08 GGTGGGATGA TAACCACTACACTAACCGCCC ATGTGTTGGA chrXIII:420461-420825 + 48 2.83e-08 CAGATGCCAT AACCGACTAGACCACGAAACC TGTTATTTGT chrIV:802633-802979 + 26 2.83e-08 CCGAAAGTGA TAACCACTACACTATAGGACC GACAATTCAT chrXI:308062-308389 + 22 2.83e-08 CAGATGCCAT AACCGACTAGACCACGAAACC ACTTAATTGT chrIV:645071-645392 + 23 2.83e-08 CCGAAAGTGA TAACCACTACACTATAGGACC GTAACAACTG chrX:378190-378290 - 36 2.83e-08 CAGATGCCAT AACCGACTAGACCACGAAACC TATTAATTTA chrV:250118-250530 - 12 2.83e-08 CCGAAAGTGA TAACCACTACACTATAGGACC AGTACAACTG chrIV:520804-521122 - 59 2.83e-08 CCGAAAGTGA TAACCACTACACTATAGGACC CTAAAATGGA chrV:438541-438876 - 42 2.83e-08 CAGATGCCAT AACCGACTAGACCACGAAACC TAATTTGTTG chrXV:980537-980928 - 1 5.83e-08 AGCGAGAATC ATTCCACTAGACCACACGCCC chrXIII:183826-184129 + 21 1.13e-07 ACGTTGGATT TTACCACTAAACCACTTGCGC GATCTTTATT chrXVI:572099-572478 - 31 1.13e-07 ACGTTGGATT TTACCACTAAACCACTTGCGC GAAGTATTGT chrVII:422928-423319 - 19 1.13e-07 CAGGCGCCTT AGACCGCTCGGCCAAACAACC ACTTATCTGT chrXIII:504723-505127 - 20 1.13e-07 CAGGCGCCTT AGACCGCTCGGCCAAACAACC ACTTATCTGT chrVII:845480-845844 - 37 1.13e-07 ACGTTGGATT TTACCACTAAACCACTTGCGC TTGTTATTTA chrVII:205349-205729 - 32 1.13e-07 CAGGCGCCTT AGACCGCTCGGCCAAACAACC ACTTATTTGT chrXVI:860207-860529 - 61 1.13e-07 ACGTTGGATT TTACCACTAAACCACTTGCGC TTGTTATTTA chrIV:1461588-1462031 + 50 1.13e-07 CAGGCGCCTT AGACCGCTCGGCCAAACAACC ACTTATTTGT chrVII:857288-857661 + 47 1.13e-07 CAGGCGCCTT AGACCGCTCGGCCAAACAACC ACTTATTTGT chrIII:123438-123797 + 61 1.39e-07 AGCGAGAATC ATACCTCTAGACCACACGCCC TCCTTTGAAA chrXIV:631767-632086 + 21 1.39e-07 AGCGAGAATC ATACCTCTAGACCACACGCCC GGTAGAAGTT chrV:131007-131316 + 22 1.39e-07 CCGAAAGTGA TAACCACTACACTATAAAACC TCTTAATTAT chrVII:661574-661913 - 56 1.53e-07 GTGCAACGCT CTACCACTAAGCTAAGGAGGC AAATTTTTAC chrVIII:466804-467143 - 67 1.53e-07 GTGCAACGCT CTACCACTAAGCTAAGGAGGC TAAAAATACA chrXVI:744123-744495 - 25 1.53e-07 GTGCAACGCT CTACCACTAAGCTAAGGAGGC TTTTACACTG chrXIV:102552-102860 - 60 2.06e-07 CGCACGCCTT AACCAACTTGGCCATGGAGTC TTATAATATA chrIII:127562-127885 - 43 2.06e-07 CGCACGCCTT AACCAACTTGGCCATGGAGTC ATTTTATCTT chrXV:487276-487626 - 38 2.06e-07 CGCACGCCTT AACCAACTTGGCCATGGAGTC TAACTTTGTT chrXII:975902-976204 + 33 2.06e-07 CGCACGCCTT AACCAACTTGGCCATGGAGTC TTTTATTTCC chrXVI:810487-810829 - 68 2.06e-07 CGCACGCCTT AACCAACTTGGCCATGGAGTC GCAAATAATG chrIV:568712-569053 - 50 2.27e-07 GTCAGACGCG TTGCCATTACGCCACGCGAGC TACTATTTGT chrII:405700-406019 - 69 2.27e-07 GTCAGACGCG TTGCCATTACGCCACGCGAGC TACTATTTGT chrVII:736167-736544 - 35 2.27e-07 GTCAGACGCG TTGCCATTACGCCACGCGAGC TATTGAAATT chrIV:1256935-1257252 + 16 2.27e-07 GCATGAATTC TAACCACTGAACCACTTTCGC TAAGAAGATC chrVII:122082-122474 - 41 3.30e-07 TCATACGCGC TACCGATTGCGCCAACAAGGC TAATTCGTTG chrV:435659-435999 + 25 3.30e-07 TCATACGCGC TACCGATTGCGCCAACAAGGC TCTTATTGTT chrIV:1201563-1201983 - 27 3.30e-07 TCATACGCGC TACCGATTGCGCCAACAAGGC TATTTATTTG chrIX:300129-300480 + 26 3.30e-07 TCATACGCGC TACCGATTGCGCCAACAAGGC TATTTCGTTG chrV:135265-135668 + 61 3.30e-07 TCATACGCGC TACCGATTGCGCCAACAAGGC TTTTTTCTTG chrVII:876253-876588 - 24 3.30e-07 TCATACGCGC TACCGATTGCGCCAACAAGGC TATTCTATTA chrII:326702-327044 + 22 3.61e-07 GCGACGTCTT GAACCACTGGACCATTGGACC CGGAACTCGA chrII:9421-9780 - 33 5.12e-07 CTGCCGCCTT AGACCACTCGGCCAACCCTCC ACGAATTTTC chrXIV:726055-726384 + 28 5.12e-07 CTGCCGCCTT AGACCACTCGGCCAACCCTCC AAAGATTTAT chrX:538393-538493 - 59 5.12e-07 GGGAGACGCG TTACCATTACGCCAACGGAAC CAACTTGGTT chrX:424300-424400 + 50 5.12e-07 CTGCCGCCTT AGACCACTCGGCCAACCCTCC ATCTTATTTA chrXII:489305-489578 - 28 8.39e-07 CGCGTATGGT CACCCACTACACTACTCGGTC AGGCTCTTAC chrX:390944-391044 + 40 1.06e-06 ACTGACGCTC TTCCTACTGAGCTACTGAAGC ACTATTTCTT chrXV:976230-976672 - 20 1.06e-06 ACTGACGCTC TTCCTACTGAGCTACTGAAGC GCACAAAATA chrX:422749-422849 - 42 1.06e-06 ACTGACGCTC TTCCTACTGAGCTACTGAAGC ATACAAAGGA chrIV:1175655-1176057 - 23 1.06e-06 ACTGACGCTC TTCCTACTGAGCTACTGAAGC TTTGTTTTGT chrVII:110451-110875 + 63 1.14e-06 CGATGTGTAC TAACCACTATACTAAGATGGC AGGTAATTAT chrXIII:362888-363250 - 45 1.14e-06 CGATGTGTAC TAACCACTATACTAAGATGGC AAACTTGGAT chrVIII:62589-62925 - 48 1.14e-06 CGATGTGTAC TAACCACTATACTAAGATGGC ATATGATTTT chrVII:319618-320021 - 12 1.14e-06 CGATGTGTAC TAACCACTATACTAAGATGGC TAATTTCTTT chrVI:157791-158169 + 57 1.33e-06 TCTGGCGCTC TCCCAACTGAGCTAAATCCGC TTCTATTTAT chrVIII:237726-238124 + 44 1.33e-06 TCTGGCGCTC TCCCAACTGAGCTAAATCCGC TTACTATTTG chrII:36246-36556 - 47 1.33e-06 TCTGGCGCTC TCCCAACTGAGCTAAATCCGC TTACAACTAA chrXIII:352104-352431 - 63 1.33e-06 TCTGGCGCTC TCCCAACTGAGCTAAATCCGC TTATATTCAT chrXVI:622412-622802 + 54 1.33e-06 TCTGGCGCTC TCCCAACTGAGCTAAATCCGC ATATCAGAAT chrXII:818451-818758 - 55 2.51e-06 GAATGCATGC TAACCATTGCACTAGAGGAGC ATAATAAATT chrXIII:837746-838109 - 51 5.63e-06 TTGCGCCTTA AACCAACTTGGCTACCGAGAG TCAATTAACT chrXV:710042-710335 - 63 5.63e-06 GCCCTGCGCG CTTCCACTGCGCCACGGCGCT GCTAATTCTT chrXIII:168623-169006 - 31 5.63e-06 TTGCGCCTTA AACCAACTTGGCTACCGAGAG TGACTATTTT chrV:99955-100352 - 30 5.63e-06 GCCCTGCGCG CTTCCACTGCGCCACGGCGCT TAGCCAACTT chrX:542861-542961 + 35 5.63e-06 TTGCGCCTTA AACCAACTTGGCTACCGAGAG TATTTAATTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAMCCACTRSGCCAHRNRVSC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:656823-657156 3.9e-10 46_[+1]_33 chrIV:410215-410565 3.9e-10 38_[-1]_41 chrVII:774184-774506 3.9e-10 53_[-1]_26 chrXVI:856730-857071 3.9e-10 51_[-1]_28 chrX:197216-197316 3.9e-10 15_[+1]_64 chrXIII:195946-196394 1.1e-09 29_[+1]_50 chrXII:92374-92755 1.1e-09 33_[-1]_46 chrVIII:388782-389169 1.1e-09 49_[+1]_30 chrXV:300873-301360 1.1e-09 30_[-1]_49 chrI:138985-139349 1.1e-09 34_[-1]_45 chrXIV:567933-568345 1.1e-09 25_[-1]_54 chrVI:101227-101581 1.1e-09 21_[-1]_58 chrXII:592434-592788 1.6e-09 37_[+1]_42 chrXII:731912-732288 1.6e-09 39_[-1]_40 chrX:617732-617832 1.6e-09 66_[-1]_13 chrV:443137-443462 1.9e-09 5_[+1]_74 chrIX:183323-183674 1.9e-09 44_[+1]_35 chrIV:667870-668246 1.9e-09 51_[+1]_28 chrV:551184-551514 1.9e-09 38_[+1]_41 chrVII:738932-739341 1.9e-09 35_[-1]_44 chrXI:46656-46952 3.8e-09 31_[+1]_48 chrV:86452-86785 3.8e-09 35_[-1]_44 chrIV:884230-884582 3.8e-09 4_[-1]_75 chrI:182412-182778 3.8e-09 37_[+1]_42 chrXIII:259054-259416 3.8e-09 33_[+1]_46 chrIV:980886-981232 3.8e-09 25_[+1]_54 chrX:523894-523994 3.8e-09 41_[+1]_38 chrVIII:132935-133316 3.8e-09 11_[+1]_68 chrXII:214804-215132 6.1e-09 16_[+1]_63 chrV:311889-312264 6.1e-09 48_[+1]_31 chrXV:274500-274908 1.1e-08 18_[-1]_61 chrIV:1150681-1151106 1.1e-08 77_[+1]_2 chrVI:191386-191787 1.1e-08 56_[+1]_23 chrXVI:435782-436154 1.3e-08 25_[+1]_54 chrVII:706985-707350 1.3e-08 41_[+1]_38 chrXVI:775684-775991 1.3e-08 28_[+1]_51 chrXIV:104645-105060 1.7e-08 2_[-1]_77 chrXV:353944-354290 1.7e-08 25_[+1]_54 chrVIII:116010-116348 1.7e-08 29_[+1]_50 chrXV:113624-113947 1.7e-08 66_[-1]_13 chrXIV:560566-560949 1.7e-08 37_[+1]_42 chrIV:434065-434509 1.7e-08 78_[+1]_1 chrXIV:96103-96489 2.2e-08 45_[+1]_34 chrXIII:420461-420825 2.8e-08 47_[+1]_32 chrIV:802633-802979 2.8e-08 25_[+1]_54 chrXI:308062-308389 2.8e-08 21_[+1]_58 chrIV:645071-645392 2.8e-08 22_[+1]_57 chrX:378190-378290 2.8e-08 35_[-1]_44 chrV:250118-250530 2.8e-08 11_[-1]_68 chrIV:520804-521122 2.8e-08 58_[-1]_21 chrV:438541-438876 2.8e-08 41_[-1]_38 chrXV:980537-980928 5.8e-08 [-1]_79 chrXIII:183826-184129 1.1e-07 20_[+1]_59 chrXVI:572099-572478 1.1e-07 30_[-1]_49 chrVII:422928-423319 1.1e-07 18_[-1]_61 chrXIII:504723-505127 1.1e-07 19_[-1]_60 chrVII:845480-845844 1.1e-07 36_[-1]_43 chrVII:205349-205729 1.1e-07 31_[-1]_48 chrXVI:860207-860529 1.1e-07 60_[-1]_19 chrIV:1461588-1462031 1.1e-07 49_[+1]_30 chrVII:857288-857661 1.1e-07 46_[+1]_33 chrIII:123438-123797 1.4e-07 60_[+1]_19 chrXIV:631767-632086 1.4e-07 20_[+1]_59 chrV:131007-131316 1.4e-07 21_[+1]_58 chrVII:661574-661913 1.5e-07 55_[-1]_24 chrVIII:466804-467143 1.5e-07 66_[-1]_13 chrXVI:744123-744495 1.5e-07 24_[-1]_55 chrXIV:102552-102860 2.1e-07 59_[-1]_20 chrIII:127562-127885 2.1e-07 42_[-1]_37 chrXV:487276-487626 2.1e-07 37_[-1]_42 chrXII:975902-976204 2.1e-07 32_[+1]_47 chrXVI:810487-810829 2.1e-07 67_[-1]_12 chrIV:568712-569053 2.3e-07 49_[-1]_30 chrII:405700-406019 2.3e-07 68_[-1]_11 chrVII:736167-736544 2.3e-07 34_[-1]_45 chrIV:1256935-1257252 2.3e-07 15_[+1]_64 chrVII:122082-122474 3.3e-07 40_[-1]_39 chrV:435659-435999 3.3e-07 24_[+1]_55 chrIV:1201563-1201983 3.3e-07 26_[-1]_53 chrIX:300129-300480 3.3e-07 25_[+1]_54 chrV:135265-135668 3.3e-07 60_[+1]_19 chrVII:876253-876588 3.3e-07 23_[-1]_56 chrII:326702-327044 3.6e-07 21_[+1]_58 chrII:9421-9780 5.1e-07 32_[-1]_47 chrXIV:726055-726384 5.1e-07 27_[+1]_52 chrX:538393-538493 5.1e-07 58_[-1]_21 chrX:424300-424400 5.1e-07 49_[+1]_30 chrXII:489305-489578 8.4e-07 27_[-1]_52 chrX:390944-391044 1.1e-06 39_[+1]_40 chrXV:976230-976672 1.1e-06 19_[-1]_60 chrX:422749-422849 1.1e-06 41_[-1]_38 chrIV:1175655-1176057 1.1e-06 22_[-1]_57 chrVII:110451-110875 1.1e-06 62_[+1]_17 chrXIII:362888-363250 1.1e-06 44_[-1]_35 chrVIII:62589-62925 1.1e-06 47_[-1]_32 chrVII:319618-320021 1.1e-06 11_[-1]_68 chrVI:157791-158169 1.3e-06 56_[+1]_23 chrVIII:237726-238124 1.3e-06 43_[+1]_36 chrII:36246-36556 1.3e-06 46_[-1]_33 chrXIII:352104-352431 1.3e-06 62_[-1]_17 chrXVI:622412-622802 1.3e-06 53_[+1]_26 chrXII:818451-818758 2.5e-06 54_[-1]_25 chrXIII:837746-838109 5.6e-06 50_[-1]_29 chrXV:710042-710335 5.6e-06 62_[-1]_17 chrXIII:168623-169006 5.6e-06 30_[-1]_49 chrV:99955-100352 5.6e-06 29_[-1]_50 chrX:542861-542961 5.6e-06 34_[+1]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAMCCACTRSGCCAHRNRVSC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WAMCCACTRSGCCAHRNRVSC width=21 seqs=107 chrXII:656823-657156 ( 47) TACCGACTACGCCACACGCCC 1 chrIV:410215-410565 ( 39) TACCGACTACGCCACACGCCC 1 chrVII:774184-774506 ( 54) TACCGACTACGCCACACGCCC 1 chrXVI:856730-857071 ( 52) TACCGACTACGCCACACGCCC 1 chrX:197216-197316 ( 16) TACCGACTACGCCACACGCCC 1 chrXIII:195946-196394 ( 30) ATACCACTAGACCACACGCCC 1 chrXII:92374-92755 ( 34) ATACCACTAGACCACACGCCC 1 chrVIII:388782-389169 ( 50) ATACCACTAGACCACACGCCC 1 chrXV:300873-301360 ( 31) ATACCACTAGACCACACGCCC 1 chrI:138985-139349 ( 35) ATACCACTAGACCACACGCCC 1 chrXIV:567933-568345 ( 26) ATACCACTAGACCACACGCCC 1 chrVI:101227-101581 ( 22) ATACCACTAGACCACACGCCC 1 chrXII:592434-592788 ( 38) AAACCACTCGGCCAAACTCCC 1 chrXII:731912-732288 ( 40) AAACCACTCGGCCAAACTCCC 1 chrX:617732-617832 ( 67) AAACCACTCGGCCAAACTCCC 1 chrV:443137-443462 ( 6) AACCAACTGGGCCAAGAGACC 1 chrIX:183323-183674 ( 45) AACCAACTGGGCCAAGAGACC 1 chrIV:667870-668246 ( 52) AACCAACTGGGCCAAGAGACC 1 chrV:551184-551514 ( 39) AACCAACTGGGCCAAGAGACC 1 chrVII:738932-739341 ( 36) AACCAACTGGGCCAAGAGACC 1 chrXI:46656-46952 ( 32) TTACCACTTGGCCAAAAGGGC 1 chrV:86452-86785 ( 36) TAACCACTCGGCCAAGTTGCC 1 chrIV:884230-884582 ( 5) TAACCACTGAGCTACACGAGC 1 chrI:182412-182778 ( 38) TAACCACTCGGCCAAGTTGCC 1 chrXIII:259054-259416 ( 34) TAACCACTCGGCCAAGTTGCC 1 chrIV:980886-981232 ( 26) TAACCACTCGGCCAAGTTGCC 1 chrX:523894-523994 ( 42) TAACCACTCGGCCAAGTTGCC 1 chrVIII:132935-133316 ( 12) TAACCACTCGGCCAAGTTGCC 1 chrXII:214804-215132 ( 17) TACCAACTGCGCCATGTGCCC 1 chrV:311889-312264 ( 49) TACCAACTGCGCCATGTGCCC 1 chrXV:274500-274908 ( 19) TAACCACTCGGCCACTGGGAC 1 chrIV:1150681-1151106 ( 78) TAACCACTCGGCCACTGGGAC 1 chrVI:191386-191787 ( 57) TAACCACTCGGCCACTGGGAC 1 chrXVI:435782-436154 ( 26) CTACCACTGCGCCATACGAGC 1 chrVII:706985-707350 ( 42) CTACCACTGCGCCATACGAGC 1 chrXVI:775684-775991 ( 29) CTACCACTGCGCCATACGAGC 1 chrXIV:104645-105060 ( 3) TACCAACTTGGCCATAGAAGC 1 chrXV:353944-354290 ( 26) TACCAACTTGGCCATAGAAGC 1 chrVIII:116010-116348 ( 30) TACCAACTTGGCCATAGAAGC 1 chrXV:113624-113947 ( 67) TACCAACTTGGCCATAGAAGC 1 chrXIV:560566-560949 ( 38) TACCAACTTGGCCATAGAAGC 1 chrIV:434065-434509 ( 79) TACCAACTTGGCCATAGAAGC 1 chrXIV:96103-96489 ( 46) TAACCACTACACTAACCGCCC 1 chrXIII:420461-420825 ( 48) AACCGACTAGACCACGAAACC 1 chrIV:802633-802979 ( 26) TAACCACTACACTATAGGACC 1 chrXI:308062-308389 ( 22) AACCGACTAGACCACGAAACC 1 chrIV:645071-645392 ( 23) TAACCACTACACTATAGGACC 1 chrX:378190-378290 ( 36) AACCGACTAGACCACGAAACC 1 chrV:250118-250530 ( 12) TAACCACTACACTATAGGACC 1 chrIV:520804-521122 ( 59) TAACCACTACACTATAGGACC 1 chrV:438541-438876 ( 42) AACCGACTAGACCACGAAACC 1 chrXV:980537-980928 ( 1) ATTCCACTAGACCACACGCCC 1 chrXIII:183826-184129 ( 21) TTACCACTAAACCACTTGCGC 1 chrXVI:572099-572478 ( 31) TTACCACTAAACCACTTGCGC 1 chrVII:422928-423319 ( 19) AGACCGCTCGGCCAAACAACC 1 chrXIII:504723-505127 ( 20) AGACCGCTCGGCCAAACAACC 1 chrVII:845480-845844 ( 37) TTACCACTAAACCACTTGCGC 1 chrVII:205349-205729 ( 32) AGACCGCTCGGCCAAACAACC 1 chrXVI:860207-860529 ( 61) TTACCACTAAACCACTTGCGC 1 chrIV:1461588-1462031 ( 50) AGACCGCTCGGCCAAACAACC 1 chrVII:857288-857661 ( 47) AGACCGCTCGGCCAAACAACC 1 chrIII:123438-123797 ( 61) ATACCTCTAGACCACACGCCC 1 chrXIV:631767-632086 ( 21) ATACCTCTAGACCACACGCCC 1 chrV:131007-131316 ( 22) TAACCACTACACTATAAAACC 1 chrVII:661574-661913 ( 56) CTACCACTAAGCTAAGGAGGC 1 chrVIII:466804-467143 ( 67) CTACCACTAAGCTAAGGAGGC 1 chrXVI:744123-744495 ( 25) CTACCACTAAGCTAAGGAGGC 1 chrXIV:102552-102860 ( 60) AACCAACTTGGCCATGGAGTC 1 chrIII:127562-127885 ( 43) AACCAACTTGGCCATGGAGTC 1 chrXV:487276-487626 ( 38) AACCAACTTGGCCATGGAGTC 1 chrXII:975902-976204 ( 33) AACCAACTTGGCCATGGAGTC 1 chrXVI:810487-810829 ( 68) AACCAACTTGGCCATGGAGTC 1 chrIV:568712-569053 ( 50) TTGCCATTACGCCACGCGAGC 1 chrII:405700-406019 ( 69) TTGCCATTACGCCACGCGAGC 1 chrVII:736167-736544 ( 35) TTGCCATTACGCCACGCGAGC 1 chrIV:1256935-1257252 ( 16) TAACCACTGAACCACTTTCGC 1 chrVII:122082-122474 ( 41) TACCGATTGCGCCAACAAGGC 1 chrV:435659-435999 ( 25) TACCGATTGCGCCAACAAGGC 1 chrIV:1201563-1201983 ( 27) TACCGATTGCGCCAACAAGGC 1 chrIX:300129-300480 ( 26) TACCGATTGCGCCAACAAGGC 1 chrV:135265-135668 ( 61) TACCGATTGCGCCAACAAGGC 1 chrVII:876253-876588 ( 24) TACCGATTGCGCCAACAAGGC 1 chrII:326702-327044 ( 22) GAACCACTGGACCATTGGACC 1 chrII:9421-9780 ( 33) AGACCACTCGGCCAACCCTCC 1 chrXIV:726055-726384 ( 28) AGACCACTCGGCCAACCCTCC 1 chrX:538393-538493 ( 59) TTACCATTACGCCAACGGAAC 1 chrX:424300-424400 ( 50) AGACCACTCGGCCAACCCTCC 1 chrXII:489305-489578 ( 28) CACCCACTACACTACTCGGTC 1 chrX:390944-391044 ( 40) TTCCTACTGAGCTACTGAAGC 1 chrXV:976230-976672 ( 20) TTCCTACTGAGCTACTGAAGC 1 chrX:422749-422849 ( 42) TTCCTACTGAGCTACTGAAGC 1 chrIV:1175655-1176057 ( 23) TTCCTACTGAGCTACTGAAGC 1 chrVII:110451-110875 ( 63) TAACCACTATACTAAGATGGC 1 chrXIII:362888-363250 ( 45) TAACCACTATACTAAGATGGC 1 chrVIII:62589-62925 ( 48) TAACCACTATACTAAGATGGC 1 chrVII:319618-320021 ( 12) TAACCACTATACTAAGATGGC 1 chrVI:157791-158169 ( 57) TCCCAACTGAGCTAAATCCGC 1 chrVIII:237726-238124 ( 44) TCCCAACTGAGCTAAATCCGC 1 chrII:36246-36556 ( 47) TCCCAACTGAGCTAAATCCGC 1 chrXIII:352104-352431 ( 63) TCCCAACTGAGCTAAATCCGC 1 chrXVI:622412-622802 ( 54) TCCCAACTGAGCTAAATCCGC 1 chrXII:818451-818758 ( 55) TAACCATTGCACTAGAGGAGC 1 chrXIII:837746-838109 ( 51) AACCAACTTGGCTACCGAGAG 1 chrXV:710042-710335 ( 63) CTTCCACTGCGCCACGGCGCT 1 chrXIII:168623-169006 ( 31) AACCAACTTGGCTACCGAGAG 1 chrV:99955-100352 ( 30) CTTCCACTGCGCCACGGCGCT 1 chrX:542861-542961 ( 35) AACCAACTTGGCTACCGAGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAMCCACTRSGCCAHRNRVSC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 45275 bayes= 8.51061 E= 4.0e-258 23 -122 -439 86 96 -207 -139 -7 76 113 -281 -344 -1339 235 -1339 -1339 -32 156 -49 -302 162 -1339 -207 -402 -1339 219 -1339 -156 -1339 -1339 -1339 172 34 -7 56 -112 -85 51 139 -302 -2 -1339 184 -1339 -1339 235 -1339 -1339 -1339 191 -1339 -21 172 -1339 -1339 -1339 40 96 -439 -56 47 -59 69 -121 -63 74 65 -85 19 -107 113 -121 26 56 69 -344 -221 131 100 -244 -1339 228 -281 -402 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAMCCACTRSGCCAHRNRVSC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 107 E= 4.0e-258 0.355140 0.084112 0.009346 0.551402 0.588785 0.046729 0.074766 0.289720 0.514019 0.429907 0.028037 0.028037 0.000000 1.000000 0.000000 0.000000 0.242991 0.579439 0.140187 0.037383 0.934579 0.000000 0.046729 0.018692 0.000000 0.897196 0.000000 0.102804 0.000000 0.000000 0.000000 1.000000 0.383178 0.186916 0.289720 0.140187 0.168224 0.280374 0.514019 0.037383 0.299065 0.000000 0.700935 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.738318 0.000000 0.261682 1.000000 0.000000 0.000000 0.000000 0.401869 0.383178 0.009346 0.205607 0.420561 0.130841 0.317757 0.130841 0.196262 0.327103 0.308411 0.168224 0.345794 0.093458 0.429907 0.130841 0.364486 0.289720 0.317757 0.028037 0.065421 0.485981 0.392523 0.056075 0.000000 0.953271 0.028037 0.018692 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAMCCACTRSGCCAHRNRVSC MEME-1 regular expression -------------------------------------------------------------------------------- [TA][AT][AC]C[CA]ACT[AG][GC][GA]C[CT]A[ACT][AG][CG][GA][AGC][CG]C -------------------------------------------------------------------------------- Time 319.38 secs. ******************************************************************************** ******************************************************************************** MOTIF TAAYCRDRAGGTCMBSGGTTCGAHYCCSVK MEME-2 width = 30 sites = 35 llr = 737 E-value = 7.7e-120 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAAYCRDRAGGTCMBSGGTTCGAHYCCSVK MEME-2 Description -------------------------------------------------------------------------------- Simplified A 168::3347233:41:1::::2a2:::12: pos.-specific C 321371:::1:18433::::a::24a7641 probability G :1123445377::1368a:::8:2:::344 matrix T 6115:231:1:72:31::aa:::46:2::4 bits 2.3 * * * 2.1 * * * 1.9 * * * 1.6 ****** * Relative 1.4 * * ******* * Entropy 1.2 * * * ******* ** (30.4 bits) 0.9 * * * * ******** **** 0.7 * * *** * ******** ***** 0.5 ***** ******** ******** ****** 0.2 *********************** ****** 0.0 ------------------------------ Multilevel TAATCGGGAGGTCCGGGGTTCGATTCCCCG consensus CC CGATAGAAATACC CC TGGT sequence G A T A A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAYCRDRAGGTCMBSGGTTCGAHYCCSVK MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXI:140824-141281 - 24 9.15e-14 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCCCG TATCGGAGTT chrV:176917-177341 + 54 9.15e-14 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCCCG TATCGGAGTA chrVII:541672-542120 + 38 9.15e-14 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCCCG TATCGGAGTG chrV:354742-355260 + 17 9.15e-14 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCCCG TATCGGAGTA chrIV:1201563-1201983 + 62 4.73e-13 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCCCCT ACAGGGCTA chrV:135265-135668 - 17 4.73e-13 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCCCCT ACAGGGCTTT chrVII:876253-876588 + 59 4.73e-13 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCCCCT ACAGGGCTTT chrIV:667870-668246 - 7 1.15e-12 ACCGTGCTAA TAACGCGGGGATCAGCGGTTCGATCCCGCT AGAGAC chrV:311889-312264 - 5 2.01e-12 GCTTCCCTTG CAAGGAAGAGGTCATCGGTTCGATTCCGGT TGCG chrI:166092-166561 + 26 2.01e-12 GCTTCCCTTG CAAGGAAGAGGTCATCGGTTCGATTCCGGT TGCGTCCAAA chrXVI:572099-572478 + 64 3.43e-12 TCCAACGTTG CCATCGTTGGGCCCCCGGTTCGATTCCGGG CTTGCGC chrVII:845480-845844 + 70 3.43e-12 TCCAACGTTG CCATCGTTGGGCCCCCGGTTCGATTCCGGG C chrIII:123438-123797 - 18 8.30e-12 TCTCGCTTAG GGTGCGGGAGGTCCCGGGTTCGAGTCCCGG CTCGCCCCAC chrVII:828510-828963 - 45 8.30e-12 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCCAT CGTGAGTGCT chrVII:736167-736544 + 69 8.30e-12 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCCAT CG chrV:138488-138972 + 20 8.30e-12 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCCAT CGTGAGTGTT chrV:250118-250530 + 46 6.22e-11 CTTTCGGTTT TGATCCGGACAACCCCGGTTCGAATCCGGG TAGGACCTTT chrXV:980537-980928 + 68 6.90e-11 AGGAACAAAG CATGCGAGAGGCCCTGGGTTCAATTCCCAG CTC chrXIV:96103-96489 - 3 8.44e-11 TCCCACCCTT CCAAGGTGGGGACACGGGTTCGATTCTCGT AC chrXVI:769022-769475 - 17 1.25e-10 TTAAGCAAGG ATACCGAAATGTCAGGGGTTCGAGCCCCCT ATGAGGAGTT chrXV:438479-438938 + 43 1.25e-10 TTAAGCAAGG ATACCGAAATGTCAGGGGTTCGAGCCCCCT ATGAGGAGTT chrXIV:104645-105060 + 38 1.67e-10 GCCACACTAG TAATGTGGAGATCATCGGTTCAAATCCGAT TGGAAGCATA chrIV:434065-434509 - 35 1.67e-10 GCCACACTAG TAATGTGGAGATCATCGGTTCAAATCCGAT TGGAAGCATA chrXV:976230-976672 + 55 5.35e-10 GTCAGTCTCA TAATCTGAAGGTCGAGAGTTCGAACCTCCC CTGGAGCAAT chrIV:1175655-1176057 + 58 5.35e-10 GTCAGTCTCA TAATCTGAAGGTCGAGAGTTCGAACCTCCC CTGGAGCATT chrIV:488545-489047 - 59 7.47e-10 GTCGCCTTTA CACGGCGAAGATCCCGAGTTCGAACCTCGG TTGGATCAGA chrXIII:420461-420825 - 3 1.12e-09 ATCTGCTTAA CACGCAGAACGTCCCCAGTTCGATCCTGGG CG chrXII:656823-657156 - 3 1.41e-09 GCTCCCTTAG CATGGGAGAGGTCTCCGGTTCGATTCCGGA CT chrIV:946140-946601 + 43 5.14e-09 TATCACTACG AAATCTTGAGATCGGGCGTTCGACTCGCCC CCGGGAGATT chrXVI:55903-56468 - 42 5.49e-09 AATAAGATTG CAATCGAAGGGTTGCAGGTTCAATTCCTGT CCGTTTCAAT chrV:99955-100352 + 64 5.87e-09 GCAGGGCTCA TAACCCTGATGTCCTCGGATCGAAACCGAG CGGCGCT chrXVI:744123-744495 + 59 1.88e-08 GTTGCACTTG TAATGCAAAGGTCGTTAGTTCAATTCTGAC AGGTGGCAAA chrIX:324153-324538 - 16 1.99e-08 TGGGCGCTTG TCGCGTGCCAGATCGGGGTTCAATTCCCCG TCGCGGAGAT chrVII:110451-110875 - 20 2.48e-08 CACATCGTTG TGGCCGATGAAACCCTGGTTCGATTCTAGG AGATGGCAAT chrVII:319618-320021 + 46 2.48e-08 CACATCGTTG TGGCCGATGAAACCCTGGTTCGATTCTAGG AGATGGCATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAYCRDRAGGTCMBSGGTTCGAHYCCSVK MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXI:140824-141281 9.1e-14 23_[-2]_47 chrV:176917-177341 9.1e-14 53_[+2]_17 chrVII:541672-542120 9.1e-14 37_[+2]_33 chrV:354742-355260 9.1e-14 16_[+2]_54 chrIV:1201563-1201983 4.7e-13 61_[+2]_9 chrV:135265-135668 4.7e-13 16_[-2]_54 chrVII:876253-876588 4.7e-13 58_[+2]_12 chrIV:667870-668246 1.1e-12 6_[-2]_64 chrV:311889-312264 2e-12 4_[-2]_66 chrI:166092-166561 2e-12 25_[+2]_45 chrXVI:572099-572478 3.4e-12 63_[+2]_7 chrVII:845480-845844 3.4e-12 69_[+2]_1 chrIII:123438-123797 8.3e-12 17_[-2]_53 chrVII:828510-828963 8.3e-12 44_[-2]_26 chrVII:736167-736544 8.3e-12 68_[+2]_2 chrV:138488-138972 8.3e-12 19_[+2]_51 chrV:250118-250530 6.2e-11 45_[+2]_25 chrXV:980537-980928 6.9e-11 67_[+2]_3 chrXIV:96103-96489 8.4e-11 2_[-2]_68 chrXVI:769022-769475 1.3e-10 16_[-2]_54 chrXV:438479-438938 1.3e-10 42_[+2]_28 chrXIV:104645-105060 1.7e-10 37_[+2]_33 chrIV:434065-434509 1.7e-10 34_[-2]_36 chrXV:976230-976672 5.3e-10 54_[+2]_16 chrIV:1175655-1176057 5.3e-10 57_[+2]_13 chrIV:488545-489047 7.5e-10 58_[-2]_12 chrXIII:420461-420825 1.1e-09 2_[-2]_68 chrXII:656823-657156 1.4e-09 2_[-2]_68 chrIV:946140-946601 5.1e-09 42_[+2]_28 chrXVI:55903-56468 5.5e-09 41_[-2]_29 chrV:99955-100352 5.9e-09 63_[+2]_7 chrXVI:744123-744495 1.9e-08 58_[+2]_12 chrIX:324153-324538 2e-08 15_[-2]_55 chrVII:110451-110875 2.5e-08 19_[-2]_51 chrVII:319618-320021 2.5e-08 45_[+2]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAYCRDRAGGTCMBSGGTTCGAHYCCSVK MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAAYCRDRAGGTCMBSGGTTCGAHYCCSVK width=30 seqs=35 chrXI:140824-141281 ( 24) TCACCGTGGAGACCGGGGTTCGACTCCCCG 1 chrV:176917-177341 ( 54) TCACCGTGGAGACCGGGGTTCGACTCCCCG 1 chrVII:541672-542120 ( 38) TCACCGTGGAGACCGGGGTTCGACTCCCCG 1 chrV:354742-355260 ( 17) TCACCGTGGAGACCGGGGTTCGACTCCCCG 1 chrIV:1201563-1201983 ( 62) TAATCATAAGGTTAGGGGTTCGAGCCCCCT 1 chrV:135265-135668 ( 17) TAATCATAAGGTTAGGGGTTCGAGCCCCCT 1 chrVII:876253-876588 ( 59) TAATCATAAGGTTAGGGGTTCGAGCCCCCT 1 chrIV:667870-668246 ( 7) TAACGCGGGGATCAGCGGTTCGATCCCGCT 1 chrV:311889-312264 ( 5) CAAGGAAGAGGTCATCGGTTCGATTCCGGT 1 chrI:166092-166561 ( 26) CAAGGAAGAGGTCATCGGTTCGATTCCGGT 1 chrXVI:572099-572478 ( 64) CCATCGTTGGGCCCCCGGTTCGATTCCGGG 1 chrVII:845480-845844 ( 70) CCATCGTTGGGCCCCCGGTTCGATTCCGGG 1 chrIII:123438-123797 ( 18) GGTGCGGGAGGTCCCGGGTTCGAGTCCCGG 1 chrVII:828510-828963 ( 45) TAATCAGAAGATTATGGGTTCGACCCCCAT 1 chrVII:736167-736544 ( 69) TAATCAGAAGATTATGGGTTCGACCCCCAT 1 chrV:138488-138972 ( 20) TAATCAGAAGATTATGGGTTCGACCCCCAT 1 chrV:250118-250530 ( 46) TGATCCGGACAACCCCGGTTCGAATCCGGG 1 chrXV:980537-980928 ( 68) CATGCGAGAGGCCCTGGGTTCAATTCCCAG 1 chrXIV:96103-96489 ( 3) CCAAGGTGGGGACACGGGTTCGATTCTCGT 1 chrXVI:769022-769475 ( 17) ATACCGAAATGTCAGGGGTTCGAGCCCCCT 1 chrXV:438479-438938 ( 43) ATACCGAAATGTCAGGGGTTCGAGCCCCCT 1 chrXIV:104645-105060 ( 38) TAATGTGGAGATCATCGGTTCAAATCCGAT 1 chrIV:434065-434509 ( 35) TAATGTGGAGATCATCGGTTCAAATCCGAT 1 chrXV:976230-976672 ( 55) TAATCTGAAGGTCGAGAGTTCGAACCTCCC 1 chrIV:1175655-1176057 ( 58) TAATCTGAAGGTCGAGAGTTCGAACCTCCC 1 chrIV:488545-489047 ( 59) CACGGCGAAGATCCCGAGTTCGAACCTCGG 1 chrXIII:420461-420825 ( 3) CACGCAGAACGTCCCCAGTTCGATCCTGGG 1 chrXII:656823-657156 ( 3) CATGGGAGAGGTCTCCGGTTCGATTCCGGA 1 chrIV:946140-946601 ( 43) AAATCTTGAGATCGGGCGTTCGACTCGCCC 1 chrXVI:55903-56468 ( 42) CAATCGAAGGGTTGCAGGTTCAATTCCTGT 1 chrV:99955-100352 ( 64) TAACCCTGATGTCCTCGGATCGAAACCGAG 1 chrXVI:744123-744495 ( 59) TAATGCAAAGGTCGTTAGTTCAATTCTGAC 1 chrIX:324153-324538 ( 16) TCGCGTGCCAGATCGGGGTTCAATTCCCCG 1 chrVII:110451-110875 ( 20) TGGCCGATGAAACCCTGGTTCGATTCTAGG 1 chrVII:319618-320021 ( 46) TGGCCGATGAAACCCTGGTTCGATTCTAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAYCRDRAGGTCMBSGGTTCGAHYCCSVK MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 40181 bayes= 11.9434 E= 7.7e-120 -182 54 -278 98 98 22 -78 -241 134 -178 -119 -182 -341 68 3 59 -1177 186 54 -1177 -24 -46 113 -82 -9 -1177 92 17 40 -278 122 -141 111 -278 68 -1177 -60 -178 174 -182 5 -1177 180 -1177 -24 -119 -1177 111 -1177 197 -1177 -41 40 113 -46 -341 -241 68 80 -9 -341 68 154 -182 -109 -278 208 -1177 -1177 -1177 235 -1177 -341 -1177 -1177 168 -1177 -1177 -1177 172 -1177 235 -1177 -1177 -82 -1177 208 -1177 172 -1177 -1177 -1177 -60 22 -20 40 -341 92 -1177 98 -1177 235 -1177 -1177 -1177 192 -278 -41 -241 154 80 -341 -41 103 92 -1177 -341 -78 113 50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAYCRDRAGGTCMBSGGTTCGAHYCCSVK MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 35 E= 7.7e-120 0.085714 0.285714 0.028571 0.600000 0.600000 0.228571 0.114286 0.057143 0.771429 0.057143 0.085714 0.085714 0.028571 0.314286 0.200000 0.457143 0.000000 0.714286 0.285714 0.000000 0.257143 0.142857 0.428571 0.171429 0.285714 0.000000 0.371429 0.342857 0.400000 0.028571 0.457143 0.114286 0.657143 0.028571 0.314286 0.000000 0.200000 0.057143 0.657143 0.085714 0.314286 0.000000 0.685714 0.000000 0.257143 0.085714 0.000000 0.657143 0.000000 0.771429 0.000000 0.228571 0.400000 0.428571 0.142857 0.028571 0.057143 0.314286 0.342857 0.285714 0.028571 0.314286 0.571429 0.085714 0.142857 0.028571 0.828571 0.000000 0.000000 0.000000 1.000000 0.000000 0.028571 0.000000 0.000000 0.971429 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.171429 0.000000 0.828571 0.000000 1.000000 0.000000 0.000000 0.000000 0.200000 0.228571 0.171429 0.400000 0.028571 0.371429 0.000000 0.600000 0.000000 1.000000 0.000000 0.000000 0.000000 0.742857 0.028571 0.228571 0.057143 0.571429 0.342857 0.028571 0.228571 0.400000 0.371429 0.000000 0.028571 0.114286 0.428571 0.428571 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAYCRDRAGGTCMBSGGTTCGAHYCCSVK MEME-2 regular expression -------------------------------------------------------------------------------- [TC][AC]A[TCG][CG][GA][GTA][GA][AG][GA][GA][TA][CT][CA][GCT][GC]GGTTCGA[TCA][TC]C[CT][CG][CGA][GT] -------------------------------------------------------------------------------- Time 604.56 secs. ******************************************************************************** ******************************************************************************** MOTIF HHHACAYCCRTACAYYWYNHWMMMHHMMHH MEME-3 width = 30 sites = 66 llr = 888 E-value = 7.8e-082 ******************************************************************************** -------------------------------------------------------------------------------- Motif HHHACAYCCRTACAYYWYNHWMMMHHMMHH MEME-3 Description -------------------------------------------------------------------------------- Simplified A 32362a1::5:9:71241325353435443 pos.-specific C 33318:6a9:2:a34414242535443434 probability G 11:3:::::411::::1131:111:111:: matrix T 4331::3:::7:::5444223112221233 bits 2.3 * 2.1 * * 1.9 ** * 1.6 * ** * Relative 1.4 ** ** ** Entropy 1.2 ** ** ** (19.4 bits) 0.9 ***** *** 0.7 *********** 0.5 ************* * * * 0.2 * **************** *********** 0.0 ------------------------------ Multilevel TCTACACCCATACATCTCACACACCCACAC consensus ATAGA T GC CCTATGATACAAACACA sequence C C T TT TT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HHHACAYCCRTACAYYWYNHWMMMHHMMHH MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXII:1064869-1065322 - 34 5.50e-14 CACCACACCC ACCACACCCACACACCACACACACACACAC CACACCACAC chrXIII:5317-5781 + 60 5.50e-14 ACACACCACA CCCACACCCACACACCACACCCACACACCC TAACACAATC chrIII:30-545 + 45 1.56e-13 ACACACCCAC ACCACACCCACACACCACACCCACACACCC ACACCCACAC chrVI:4460-4973 + 50 4.10e-12 CACCCACACA CCCACACCCACACACCACACCCACACCACA CCCACACACC chrXI:666445-666805 - 62 1.46e-11 CACACCCAC ACCACACCCACACCACACCCACACCCACAC CACACCCACA chrV:6188-6510 + 47 1.46e-11 TTCACCCACA CCCACACCCACACACCATGCTCACCTTCAC TTGTATACAC chrIV:50-302 + 8 1.69e-10 CACCACA CCCACACCCACACACCACACACTACCCCTA ACACTACCCT chrX:157460-157560 - 47 5.41e-10 CGACAATGTG TTTACACCCGTACACTTTATACATCCATAC ATCTCCATAA chrVIII:562284-562628 - 46 6.51e-10 CACACACACA CCCACACCCACACACCACACCCACACTTTT CACATCTATC chrIV:1525320-1525636 - 1 6.51e-10 TACACACCAC ACCACACCCACACACACCACACCACACCCA chrXIV:783853-784171 - 61 6.51e-10 ACCCACACAC ACCACACCCACACACTACCCTAACACTACC CTAACACTAC chrIV:1359441-1359769 + 38 6.51e-10 AAAAAGACAT TAAACATCCGTACATTACGCACCCATGCAT GCTATCTGAA chrVII:371272-371464 + 34 4.19e-09 AAAAAAAATA CCGGCACCCATGCACCTCACACCGCCGCAC GCGAGTGAGG chrXIV:495249-495560 - 27 4.19e-09 TCCTTGACAT ATTCAATCCGTACACTATACACACCCAAAC CTCCTTTAAA chrVI:221819-222025 - 34 1.03e-08 AATAAGACTT TTTTCACCCGTACATTTTTAACACCCAATT CCTTTCCGGC chrIV:229533-229712 + 55 1.58e-08 CAGATATTCC TTTAAACCCATACATATCTTACACAAAACA TCCGTACATC chrXVI:406191-406534 + 56 2.08e-08 TTTATGAAGT TTAACATCCGTACCTTTCCACCTCCAAACA TTTTTTGTAA chrIV:411301-411607 + 28 2.72e-08 AGAAACAAAT CAAACACCCACACCCCGGGCACCCAAAGTC CCCACCCACA chrVIII:505857-506164 - 27 4.55e-08 TCGAGACAAT TATGCATCCATACATTTCACCCAGACATTT TGTGTGCGCG chrXIV:63149-63558 - 1 5.82e-08 TCAATACTAC TTTACATCCGAACATTTTAGCAACCCACAC chrII:332354-332691 + 50 6.57e-08 ATATTTCCTT GCTGCACCCATACAATTCTAAACCCAAACA TGTTTCCCGC chrVIII:382967-383303 - 2 7.41e-08 CCGAACATCC GATACACCCATACATCATGAAAATAAATCC T chrXV:505150-505449 + 42 8.35e-08 CGTCATTCAT TTCAAACCCATACACAATGAACCTTATCAC ACCCAAACAT chrXVI:699977-700324 + 31 9.38e-08 TTTCGAGGAC CGCGAATCCTTACATCACACCCAATCCCCC ACAAGTGATC chrVII:788369-788706 - 28 9.38e-08 AATATTCCTT ACAACATCCGTGCATACTCTAAACCCAATC ACTAATTTTC chrXI:382223-382441 + 20 1.05e-07 CTTTGCTGCT GTTGCATCCGGACATCACACCCAACACAAA ACCCCGCGCG chrV:305782-306168 + 57 1.18e-07 ATATCGGGAC TGTACACCCACACATTTACAAGCCCACACA TCCTACAACT chrXIII:551392-551749 - 9 1.48e-07 TTTCAGTGCC ATAAAATCTGTACATTACGCACCCATACAT TTATAGTT chrVII:649009-649337 - 12 1.48e-07 CAGGACATTT TAAACATCCGTACAACGAGAACCCATACAT TACTTTTTTT chrV:396242-396510 + 50 1.65e-07 TTCCCTGTTG TATACATCCGTACACTTTTGTGAACCCAAA CATTTTTTGT chrV:140525-140854 - 22 1.65e-07 GTGGACGCAC AAAGCACCCATACCTTTTACAATGCCGAAC ACCACCGGCA chrIX:316174-316547 + 39 2.28e-07 AGTTTTCAGA CTAGAACCCATACATTATTTTACAAACCCA GACAGTACAC chrXII:932114-932447 - 15 2.81e-07 TCCGTACATC CGTACATCCGTACATCTGTACACAAAAAAA ATCACCTCAT chrIX:254253-254528 - 4 4.63e-07 GCGGCGAGCT TCCGCACCCACACATTCTAATTGCCGCGCC TTC chrVII:438628-438851 - 55 5.62e-07 GAAAAAGACC TTACCATCCATACATTTTGGAACGTTACAT CTGTGCACCA chrXII:713192-713521 - 52 5.62e-07 GTTGCAGACT ATCACATCCGTACATATGTATAAAAAAATC CGTGCTTTAC chrXI:108776-109036 + 62 6.18e-07 CAAACACATT ACAACATCCGTACATTTAGTTGGCTCCATT TTTTGAAAA chrVI:223973-224175 - 19 6.78e-07 ACTGTTTTCT TTTACATCCGTACATACTCTTAGACCCATA CAGCGCATGT chrIV:130627-130923 - 37 6.78e-07 ACTTTTCTGA TGCGCTCCCGTACACCTTTGACATATACAA ACATCCGCAC chrXV:216295-216636 + 41 6.78e-07 TCGGAACATC CGAGCACCCGCGCCTTCCTCAACCCAGGCA CCGCCCCCAG chrIV:217257-217463 + 1 8.16e-07 . TTTGAACCCGTACATTTTATTCTATAATAT TGCATCTGTG chrII:167984-168107 + 37 8.16e-07 GGACAGTGTT TTAAAACCCAGACATATTTTTCACCAGTAC CTCTTGGAAA chrXII:897775-897962 + 40 9.76e-07 ACAGAATTCT ACAACACCTGTACCTCCAAAAAACCCATTT CTTTTCTGTT chrXIV:764013-764314 - 18 9.76e-07 ACTAACGTAG ACAGCACCCAGACACTCAGGACCCTGATTT ACGTTTATGC chrXII:796476-796818 - 23 1.07e-06 TCTTCTATCT TTTGCATCCGTGCCTCCTGGATAATAACTT CAATCCTTGC chrXII:922164-922486 + 67 1.27e-06 ACGTTTGAAA TTGACACCCGTACATATTCCAATTCTCGTC TTGC chrXV:161150-161335 - 40 1.38e-06 TTTTCTGGCA ACCAAACCCATACATCGGGATTCCTATAAT ACCTTCGTTG chrIII:163517-163843 - 33 1.51e-06 TAGAATCCCA CGTGCACCCATACCATATGATCGTTAAATT ACCGCACCCA chrXV:29281-29661 - 29 1.93e-06 CTATACCATT ACCACAACCGTACCATGTTCATCTACCACC GCCACTATCA chrXIV:771909-772408 - 42 2.10e-06 ACTCTATGCA CAAAAATGCATACCCCACCTCCACCTTCCT ATTTTGTGCA chrXII:818845-819141 + 53 2.10e-06 GCATACCTTT CCAACATCCGTACATATTGATTATTGTATC TATGATTTTC chrI:29-250 + 69 2.46e-06 TACCCTGTCC CATTCAACCATACCACTCCGAACCACCATC CA chrIX:99679-99982 - 34 2.46e-06 AAGTGCAATT AAAGCATCGGTACACCATGTAACACCAGTA CATTTATTCA chrIV:358165-358353 - 26 3.11e-06 CTTGGTGTAC ACACCACCCATACATTATCTGACAAGGAAA CAAAAGTAAT chrX:73422-73522 + 48 3.61e-06 AACACATCAT TGTACATCCTTGCACCACACTGAAAAGAAT ATGGAAAAAA chrXV:1028738-1029068 - 40 3.90e-06 TGTTTACCAT TGTGCATCCGTACATTTGATTTGTTTACAA CATCTTCACA chrXII:1012181-1012367 + 11 4.85e-06 CTAATGAGGA ATAGAACCCATGCACCACACGCAAATGTGC GCACGGACAA chrV:23499-23952 + 8 4.85e-06 CACGCAC ATGAAACGCATACCCCACCCCCACATTTCT CATTTAATAT chrVIII:504748-504898 - 13 5.21e-06 CTATCAGATA CCCAGACCCAAACATCAAGGTCAATGACAC TGTTAAGATT chrVIII:521975-522201 + 30 6.89e-06 TGACACTCTT TACGAAACTTTACCCCTCCCCCACCTCCAC CTGCATTTAT chrV:85130-85464 + 50 7.38e-06 GCAGTGATAT CATCCACCCATACCCCTCGATGTATTCCGT AGCGTTATAT chrXV:253887-254093 - 24 9.02e-06 TACAAAACTT TTTTAATCCGTACACCGCGCGTATAAATCA ATGTTATGTC chrXVI:731965-732279 + 29 1.03e-05 TCGCATCGTC AGTACACCCATACCTTTAGGATGGTTGGAT GTTGCGCTGT chrXV:168041-168389 - 9 1.24e-05 TGGGCGGCTT TAAACACCCGTGCCTATATTTAAGTTTACC AAGTCAGA chrIV:1489583-1489838 - 36 1.41e-05 TCTACCAATG GTTCCAACCGTACCAACGGTTCCAACACCA CCAGCACCAA chrIV:490949-491225 + 71 2.13e-05 AATAGTTCCC TCATAACCCAGACCTATTTTATTACACCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HHHACAYCCRTACAYYWYNHWMMMHHMMHH MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:1064869-1065322 5.5e-14 33_[-3]_37 chrXIII:5317-5781 5.5e-14 59_[+3]_11 chrIII:30-545 1.6e-13 44_[+3]_26 chrVI:4460-4973 4.1e-12 49_[+3]_21 chrXI:666445-666805 1.5e-11 61_[-3]_9 chrV:6188-6510 1.5e-11 46_[+3]_24 chrIV:50-302 1.7e-10 7_[+3]_63 chrX:157460-157560 5.4e-10 46_[-3]_24 chrVIII:562284-562628 6.5e-10 45_[-3]_25 chrIV:1525320-1525636 6.5e-10 [-3]_70 chrXIV:783853-784171 6.5e-10 60_[-3]_10 chrIV:1359441-1359769 6.5e-10 37_[+3]_33 chrVII:371272-371464 4.2e-09 33_[+3]_37 chrXIV:495249-495560 4.2e-09 26_[-3]_44 chrVI:221819-222025 1e-08 33_[-3]_37 chrIV:229533-229712 1.6e-08 54_[+3]_16 chrXVI:406191-406534 2.1e-08 55_[+3]_15 chrIV:411301-411607 2.7e-08 27_[+3]_43 chrVIII:505857-506164 4.5e-08 26_[-3]_44 chrXIV:63149-63558 5.8e-08 [-3]_70 chrII:332354-332691 6.6e-08 49_[+3]_21 chrVIII:382967-383303 7.4e-08 1_[-3]_69 chrXV:505150-505449 8.3e-08 41_[+3]_29 chrXVI:699977-700324 9.4e-08 30_[+3]_40 chrVII:788369-788706 9.4e-08 27_[-3]_43 chrXI:382223-382441 1.1e-07 19_[+3]_51 chrV:305782-306168 1.2e-07 56_[+3]_14 chrXIII:551392-551749 1.5e-07 8_[-3]_62 chrVII:649009-649337 1.5e-07 11_[-3]_59 chrV:396242-396510 1.6e-07 49_[+3]_21 chrV:140525-140854 1.6e-07 21_[-3]_49 chrIX:316174-316547 2.3e-07 38_[+3]_32 chrXII:932114-932447 2.8e-07 14_[-3]_56 chrIX:254253-254528 4.6e-07 3_[-3]_67 chrVII:438628-438851 5.6e-07 54_[-3]_16 chrXII:713192-713521 5.6e-07 51_[-3]_19 chrXI:108776-109036 6.2e-07 61_[+3]_9 chrVI:223973-224175 6.8e-07 18_[-3]_52 chrIV:130627-130923 6.8e-07 36_[-3]_34 chrXV:216295-216636 6.8e-07 40_[+3]_30 chrIV:217257-217463 8.2e-07 [+3]_70 chrII:167984-168107 8.2e-07 36_[+3]_34 chrXII:897775-897962 9.8e-07 39_[+3]_31 chrXIV:764013-764314 9.8e-07 17_[-3]_53 chrXII:796476-796818 1.1e-06 22_[-3]_48 chrXII:922164-922486 1.3e-06 66_[+3]_4 chrXV:161150-161335 1.4e-06 39_[-3]_31 chrIII:163517-163843 1.5e-06 32_[-3]_38 chrXV:29281-29661 1.9e-06 28_[-3]_42 chrXIV:771909-772408 2.1e-06 41_[-3]_29 chrXII:818845-819141 2.1e-06 52_[+3]_18 chrI:29-250 2.5e-06 68_[+3]_2 chrIX:99679-99982 2.5e-06 33_[-3]_37 chrIV:358165-358353 3.1e-06 25_[-3]_45 chrX:73422-73522 3.6e-06 47_[+3]_23 chrXV:1028738-1029068 3.9e-06 39_[-3]_31 chrXII:1012181-1012367 4.9e-06 10_[+3]_60 chrV:23499-23952 4.9e-06 7_[+3]_63 chrVIII:504748-504898 5.2e-06 12_[-3]_58 chrVIII:521975-522201 6.9e-06 29_[+3]_41 chrV:85130-85464 7.4e-06 49_[+3]_21 chrXV:253887-254093 9e-06 23_[-3]_47 chrXVI:731965-732279 1e-05 28_[+3]_42 chrXV:168041-168389 1.2e-05 8_[-3]_62 chrIV:1489583-1489838 1.4e-05 35_[-3]_35 chrIV:490949-491225 2.1e-05 70_[+3] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HHHACAYCCRTACAYYWYNHWMMMHHMMHH MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF HHHACAYCCRTACAYYWYNHWMMMHHMMHH width=30 seqs=66 chrXII:1064869-1065322 ( 34) ACCACACCCACACACCACACACACACACAC 1 chrXIII:5317-5781 ( 60) CCCACACCCACACACCACACCCACACACCC 1 chrIII:30-545 ( 45) ACCACACCCACACACCACACCCACACACCC 1 chrVI:4460-4973 ( 50) CCCACACCCACACACCACACCCACACCACA 1 chrXI:666445-666805 ( 62) ACCACACCCACACCACACCCACACCCACAC 1 chrV:6188-6510 ( 47) CCCACACCCACACACCATGCTCACCTTCAC 1 chrIV:50-302 ( 8) CCCACACCCACACACCACACACTACCCCTA 1 chrX:157460-157560 ( 47) TTTACACCCGTACACTTTATACATCCATAC 1 chrVIII:562284-562628 ( 46) CCCACACCCACACACCACACCCACACTTTT 1 chrIV:1525320-1525636 ( 1) ACCACACCCACACACACCACACCACACCCA 1 chrXIV:783853-784171 ( 61) ACCACACCCACACACTACCCTAACACTACC 1 chrIV:1359441-1359769 ( 38) TAAACATCCGTACATTACGCACCCATGCAT 1 chrVII:371272-371464 ( 34) CCGGCACCCATGCACCTCACACCGCCGCAC 1 chrXIV:495249-495560 ( 27) ATTCAATCCGTACACTATACACACCCAAAC 1 chrVI:221819-222025 ( 34) TTTTCACCCGTACATTTTTAACACCCAATT 1 chrIV:229533-229712 ( 55) TTTAAACCCATACATATCTTACACAAAACA 1 chrXVI:406191-406534 ( 56) TTAACATCCGTACCTTTCCACCTCCAAACA 1 chrIV:411301-411607 ( 28) CAAACACCCACACCCCGGGCACCCAAAGTC 1 chrVIII:505857-506164 ( 27) TATGCATCCATACATTTCACCCAGACATTT 1 chrXIV:63149-63558 ( 1) TTTACATCCGAACATTTTAGCAACCCACAC 1 chrII:332354-332691 ( 50) GCTGCACCCATACAATTCTAAACCCAAACA 1 chrVIII:382967-383303 ( 2) GATACACCCATACATCATGAAAATAAATCC 1 chrXV:505150-505449 ( 42) TTCAAACCCATACACAATGAACCTTATCAC 1 chrXVI:699977-700324 ( 31) CGCGAATCCTTACATCACACCCAATCCCCC 1 chrVII:788369-788706 ( 28) ACAACATCCGTGCATACTCTAAACCCAATC 1 chrXI:382223-382441 ( 20) GTTGCATCCGGACATCACACCCAACACAAA 1 chrV:305782-306168 ( 57) TGTACACCCACACATTTACAAGCCCACACA 1 chrXIII:551392-551749 ( 9) ATAAAATCTGTACATTACGCACCCATACAT 1 chrVII:649009-649337 ( 12) TAAACATCCGTACAACGAGAACCCATACAT 1 chrV:396242-396510 ( 50) TATACATCCGTACACTTTTGTGAACCCAAA 1 chrV:140525-140854 ( 22) AAAGCACCCATACCTTTTACAATGCCGAAC 1 chrIX:316174-316547 ( 39) CTAGAACCCATACATTATTTTACAAACCCA 1 chrXII:932114-932447 ( 15) CGTACATCCGTACATCTGTACACAAAAAAA 1 chrIX:254253-254528 ( 4) TCCGCACCCACACATTCTAATTGCCGCGCC 1 chrVII:438628-438851 ( 55) TTACCATCCATACATTTTGGAACGTTACAT 1 chrXII:713192-713521 ( 52) ATCACATCCGTACATATGTATAAAAAAATC 1 chrXI:108776-109036 ( 62) ACAACATCCGTACATTTAGTTGGCTCCATT 1 chrVI:223973-224175 ( 19) TTTACATCCGTACATACTCTTAGACCCATA 1 chrIV:130627-130923 ( 37) TGCGCTCCCGTACACCTTTGACATATACAA 1 chrXV:216295-216636 ( 41) CGAGCACCCGCGCCTTCCTCAACCCAGGCA 1 chrIV:217257-217463 ( 1) TTTGAACCCGTACATTTTATTCTATAATAT 1 chrII:167984-168107 ( 37) TTAAAACCCAGACATATTTTTCACCAGTAC 1 chrXII:897775-897962 ( 40) ACAACACCTGTACCTCCAAAAAACCCATTT 1 chrXIV:764013-764314 ( 18) ACAGCACCCAGACACTCAGGACCCTGATTT 1 chrXII:796476-796818 ( 23) TTTGCATCCGTGCCTCCTGGATAATAACTT 1 chrXII:922164-922486 ( 67) TTGACACCCGTACATATTCCAATTCTCGTC 1 chrXV:161150-161335 ( 40) ACCAAACCCATACATCGGGATTCCTATAAT 1 chrIII:163517-163843 ( 33) CGTGCACCCATACCATATGATCGTTAAATT 1 chrXV:29281-29661 ( 29) ACCACAACCGTACCATGTTCATCTACCACC 1 chrXIV:771909-772408 ( 42) CAAAAATGCATACCCCACCTCCACCTTCCT 1 chrXII:818845-819141 ( 53) CCAACATCCGTACATATTGATTATTGTATC 1 chrI:29-250 ( 69) CATTCAACCATACCACTCCGAACCACCATC 1 chrIX:99679-99982 ( 34) AAAGCATCGGTACACCATGTAACACCAGTA 1 chrIV:358165-358353 ( 26) ACACCACCCATACATTATCTGACAAGGAAA 1 chrX:73422-73522 ( 48) TGTACATCCTTGCACCACACTGAAAAGAAT 1 chrXV:1028738-1029068 ( 40) TGTGCATCCGTACATTTGATTTGTTTACAA 1 chrXII:1012181-1012367 ( 11) ATAGAACCCATGCACCACACGCAAATGTGC 1 chrV:23499-23952 ( 8) ATGAAACGCATACCCCACCCCCACATTTCT 1 chrVIII:504748-504898 ( 13) CCCAGACCCAAACATCAAGGTCAATGACAC 1 chrVIII:521975-522201 ( 30) TACGAAACTTTACCCCTCCCCCACCTCCAC 1 chrV:85130-85464 ( 50) CATCCACCCATACCCCTCGATGTATTCCGT 1 chrXV:253887-254093 ( 24) TTTTAATCCGTACACCGCGCGTATAAATCA 1 chrXVI:731965-732279 ( 29) AGTACACCCATACCTTTAGGATGGTTGGAT 1 chrXV:168041-168389 ( 9) TAAACACCCGTGCCTATATTTAAGTTTACC 1 chrIV:1489583-1489838 ( 36) GTTCCAACCGTACCAACGGTTCCAACACCA 1 chrIV:490949-491225 ( 71) TCATAACCCAGACCTATTTTATTACACCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HHHACAYCCRTACAYYWYNHWMMMHHMMHH MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 40181 bayes= 10.5929 E= 7.8e-082 0 39 -170 32 -62 83 -53 7 7 55 -211 20 96 -137 47 -232 -42 195 -369 -1269 170 -1269 -1269 -432 -232 159 -1269 20 -1269 230 -269 -1269 -1269 226 -369 -274 80 -1269 111 -274 -332 11 -170 120 156 -1269 -89 -1269 -1269 235 -1269 -1269 126 47 -1269 -1269 -152 95 -1269 76 -74 116 -1269 32 32 -53 -137 43 -132 106 -111 32 7 -11 63 -62 -42 106 -53 -42 63 0 -211 -8 -16 139 -137 -115 72 63 -111 -152 -8 126 -111 -100 32 100 -1269 -42 7 95 -137 -42 63 39 -53 -115 26 95 -111 -87 38 70 -269 -24 0 106 -1269 -8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HHHACAYCCRTACAYYWYNHWMMMHHMMHH MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 66 E= 7.8e-082 0.303030 0.257576 0.060606 0.378788 0.196970 0.348485 0.136364 0.318182 0.318182 0.287879 0.045455 0.348485 0.590909 0.075758 0.272727 0.060606 0.227273 0.757576 0.015152 0.000000 0.984848 0.000000 0.000000 0.015152 0.060606 0.590909 0.000000 0.348485 0.000000 0.969697 0.030303 0.000000 0.000000 0.939394 0.015152 0.045455 0.530303 0.000000 0.424242 0.045455 0.030303 0.212121 0.060606 0.696970 0.893939 0.000000 0.106061 0.000000 0.000000 1.000000 0.000000 0.000000 0.727273 0.272727 0.000000 0.000000 0.106061 0.378788 0.000000 0.515152 0.181818 0.439394 0.000000 0.378788 0.378788 0.136364 0.075758 0.409091 0.121212 0.409091 0.090909 0.378788 0.318182 0.181818 0.303030 0.196970 0.227273 0.409091 0.136364 0.227273 0.469697 0.196970 0.045455 0.287879 0.272727 0.515152 0.075758 0.136364 0.500000 0.303030 0.090909 0.106061 0.287879 0.469697 0.090909 0.151515 0.378788 0.393939 0.000000 0.227273 0.318182 0.378788 0.075758 0.227273 0.469697 0.257576 0.136364 0.136364 0.363636 0.378788 0.090909 0.166667 0.393939 0.318182 0.030303 0.257576 0.303030 0.409091 0.000000 0.287879 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HHHACAYCCRTACAYYWYNHWMMMHHMMHH MEME-3 regular expression -------------------------------------------------------------------------------- [TAC][CT][TAC][AG][CA]A[CT]CC[AG][TC]AC[AC][TC][CT][TA][CT][AG][CAT][AT][CA][AC][CA][CAT][CAT][AC][CA][ACT][CAT] -------------------------------------------------------------------------------- Time 886.08 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:354742-355260 2.90e-10 16_[+2(9.15e-14)]_54 chrVIII:455645-455922 8.04e-01 100 chrIV:221331-221711 2.72e-01 100 chrXIII:306467-307124 4.34e-01 100 chrV:61043-62124 7.65e-01 100 chrV:305782-306168 9.33e-04 56_[+3(1.18e-07)]_14 chrX:424300-424400 8.44e-05 49_[+1(5.12e-07)]_30 chrIV:1269172-1269552 4.34e-01 100 chrIV:1402200-1402330 2.86e-02 100 chrV:438541-438876 2.19e-04 41_[-1(2.83e-08)]_38 chrXIII:732075-732355 4.93e-01 100 chrXIV:499727-500791 8.15e-01 100 chrXVI:744123-744495 2.12e-09 24_[-1(1.53e-07)]_13_[+2(1.88e-08)]_\ 12 chrV:441843-442605 3.18e-01 100 chrV:396766-397146 2.02e-01 100 chrVII:738932-739341 9.99e-06 35_[-1(1.90e-09)]_44 chrXIII:162415-162722 8.47e-01 100 chrX:542861-542961 8.59e-03 34_[+1(5.63e-06)]_45 chrXII:636875-637726 4.42e-01 100 chrXIV:495249-495560 1.30e-05 26_[-3(4.19e-09)]_44 chrXI:141675-141902 3.47e-01 100 chrVII:857288-857661 7.33e-04 46_[+1(1.13e-07)]_33 chrXII:796476-796818 5.09e-03 22_[-3(1.07e-06)]_48 chrXV:908908-909065 6.73e-01 100 chrV:79036-79416 4.09e-01 100 chrV:23499-23952 1.41e-02 7_[+3(4.85e-06)]_63 chrXII:363148-363528 6.06e-01 100 chrIV:579658-580281 4.12e-01 100 chrIV:722479-722735 9.05e-01 100 chrXVI:516316-516696 1.68e-01 100 chrXIII:222668-222870 8.11e-01 100 chrIX:28-239 8.50e-01 100 chrXIII:252062-252442 2.84e-01 100 chrIV:1359441-1359769 9.80e-06 37_[+3(6.51e-10)]_33 chrV:140525-140854 7.22e-04 21_[-3(1.65e-07)]_49 chrXVI:282131-282511 6.09e-01 100 chrX:197216-197316 2.33e-06 15_[+1(3.91e-10)]_64 chrIV:1239827-1240005 3.77e-01 100 chrXIII:290623-290944 2.79e-01 100 chrIV:768476-768856 5.52e-02 100 chrX:541342-541442 1.15e-01 100 chrXI:146939-147132 4.74e-01 100 chrVII:876253-876588 1.52e-12 23_[-1(3.30e-07)]_14_[+2(4.73e-13)]_\ 12 chrXII:818845-819141 1.81e-03 52_[+3(2.10e-06)]_18 chrIV:1162872-1162982 9.25e-01 100 chrVII:1083714-1083875 9.73e-01 100 chrX:453703-453803 5.72e-01 100 chrVII:277891-278295 2.28e-01 100 chrXVI:775684-775991 2.47e-05 28_[+1(1.27e-08)]_51 chrV:266345-266725 4.56e-01 100 chrVIII:385571-385689 2.60e-01 100 chrV:99955-100352 1.57e-07 29_[-1(5.63e-06)]_13_[+2(5.87e-09)]_\ 7 chrV:483431-483811 7.65e-01 100 chrVII:366152-366676 4.26e-01 100 chrXII:704270-704586 4.49e-01 100 chrXVI:173309-173622 9.80e-01 100 chrXIV:585889-586448 9.81e-01 100 chrXVI:810487-810829 1.56e-04 67_[-1(2.06e-07)]_12 chrIX:322541-322921 9.66e-01 100 chrXII:84147-84442 8.96e-01 100 chrXII:86938-87123 4.49e-01 100 chrXI:68206-68409 1.60e-01 100 chrX:121261-121361 5.95e-01 100 chrXIV:575294-575623 6.43e-01 100 chrXVI:622412-622802 7.90e-04 53_[+1(1.33e-06)]_26 chrXVI:856730-857071 1.97e-06 51_[-1(3.91e-10)]_28 chrIV:1461588-1462031 4.27e-04 49_[+1(1.13e-07)]_30 chrXI:159263-159391 5.67e-01 100 chrVIII:115481-115595 6.21e-01 100 chrIX:438870-439131 7.47e-01 100 chrXIII:760067-760180 4.81e-01 100 chrVII:609720-610122 8.38e-02 100 chrXI:163618-164032 7.73e-01 100 chrVIII:451267-453003 1.42e-01 100 chrIV:218454-218639 3.89e-01 100 chrIV:1175655-1176057 1.02e-09 22_[-1(1.06e-06)]_14_[+2(5.35e-10)]_\ 13 chrII:226913-227357 2.68e-01 100 chrIV:1238085-1238323 7.70e-01 100 chrX:538393-538493 2.08e-04 58_[-1(5.12e-07)]_21 chrXIV:502146-502504 8.27e-01 100 chrIV:520804-521122 3.06e-06 58_[-1(2.83e-08)]_21 chrXV:897144-897524 4.13e-01 100 chrXV:796995-797303 5.79e-01 100 chrXIV:659234-659614 9.42e-01 100 chrXI:490816-491107 1.69e-01 56_[-1(8.14e-05)]_23 chrXV:733-1017 3.92e-01 100 chrXI:45988-46368 5.88e-01 100 chrXII:234621-235001 9.43e-01 100 chrIV:1268964-1269344 6.95e-01 100 chrII:88111-88524 4.35e-01 100 chrVII:702939-703261 9.97e-01 100 chrXII:837638-839438 6.31e-01 100 chrXV:159248-160313 1.42e-02 11_[+2(5.84e-05)]_59 chrXI:108776-109036 2.54e-03 61_[+3(6.18e-07)]_9 chrI:20845-21225 9.15e-01 100 chrVII:986861-987309 6.57e-01 100 chrXIII:163082-163462 5.51e-01 100 chrIV:1161551-1161953 7.23e-02 100 chrVIII:381847-382227 6.77e-01 100 chrXIII:5317-5781 2.16e-09 59_[+3(5.50e-14)]_11 chrX:422749-422849 3.14e-03 41_[-1(1.06e-06)]_38 chrXIV:501573-501745 4.57e-01 100 chrXV:966228-966608 1.03e-01 100 chrII:414820-415200 6.97e-01 100 chrXIII:500413-500554 1.78e-01 100 chrI:166092-166561 5.68e-08 25_[+2(2.01e-12)]_45 chrXII:232171-234089 2.75e-01 100 chrVII:479243-480672 5.46e-01 100 chrV:67802-68745 2.69e-01 100 chrXII:491557-491937 7.80e-01 100 chrXV:444799-445767 1.80e-01 100 chrXVI:860207-860529 3.89e-04 60_[-1(1.13e-07)]_19 chrIV:1256935-1257252 5.75e-04 15_[+1(2.27e-07)]_64 chrVII:319618-320021 1.36e-07 11_[-1(1.14e-06)]_13_[+2(2.48e-08)]_\ 25 chrVII:205349-205729 2.24e-04 31_[-1(1.13e-07)]_48 chrIV:915367-915747 5.10e-03 32_[-1(7.87e-05)]_47 chrV:172341-172721 4.64e-01 100 chrIV:976086-976512 4.40e-01 100 chrV:551184-551514 7.79e-06 38_[+1(1.90e-09)]_41 chrII:236954-237334 9.49e-01 100 chrXIII:124387-124660 8.90e-01 100 chrXI:284166-284432 1.40e-01 100 chrXII:975902-976204 2.19e-04 32_[+1(2.06e-07)]_47 chrIV:667870-668246 1.04e-14 6_[-2(1.15e-12)]_15_[+1(1.90e-09)]_\ 28 chrV:431029-431536 2.71e-02 100 chrII:332354-332691 6.07e-04 49_[+3(6.57e-08)]_21 chrIII:92430-92810 7.52e-01 100 chrXI:517199-517579 7.96e-01 100 chrXV:168041-168389 2.88e-02 8_[-3(1.24e-05)]_62 chrV:85670-86186 9.22e-01 100 chrVII:987361-987676 6.01e-01 100 chrIII:107246-107834 3.75e-01 100 chrVIII:375354-375766 7.62e-01 100 chrI:180970-181434 2.70e-01 100 chrII:798819-798944 7.99e-01 100 chrXIII:554374-554754 9.46e-01 100 chrV:138488-138972 1.88e-07 19_[+2(8.30e-12)]_51 chrX:617732-617832 8.75e-06 66_[-1(1.59e-09)]_13 chrIV:323014-323344 5.64e-01 100 chrI:202571-202714 3.54e-01 100 chrVII:541672-542120 2.16e-10 37_[+2(9.15e-14)]_33 chrII:165056-165530 4.74e-01 100 chrXII:188118-188498 7.84e-01 100 chrX:663789-663889 5.14e-02 100 chrII:373175-373270 9.66e-01 95 chrXIII:267841-268270 5.47e-01 100 chrVIII:505857-506164 3.19e-04 26_[-3(4.55e-08)]_44 chrXIII:23786-25717 2.55e-01 100 chrX:651276-651376 2.27e-01 100 chrIV:1524705-1524890 9.92e-01 100 chrX:157460-157560 1.80e-06 46_[-3(5.41e-10)]_24 chrXI:617667-617953 7.44e-01 100 chrXVI:304023-304250 6.17e-01 100 chrVIII:35243-35762 1.77e-01 100 chrXIII:168623-169006 8.59e-03 30_[-1(5.63e-06)]_49 chrIX:183323-183674 2.57e-05 44_[+1(1.90e-09)]_35 chrXII:809242-809506 2.90e-01 100 chrII:197323-197870 8.30e-01 100 chrVIII:17101-17279 6.43e-01 100 chrI:185703-186030 1.49e-02 12_[+3(4.08e-05)]_58 chrXII:809912-810292 8.02e-01 100 chrV:443137-443462 6.21e-06 5_[+1(1.90e-09)]_74 chrXII:728220-728553 4.79e-01 100 chrX:90107-90207 2.66e-01 100 chrXV:624003-624383 9.65e-01 100 chrXII:952439-952658 2.69e-01 100 chrVII:856747-856978 1.22e-01 100 chrIV:490949-491225 4.12e-03 70_[+3(2.13e-05)] chrXV:216295-216636 1.30e-03 40_[+3(6.78e-07)]_30 chrXIV:764013-764314 7.11e-04 17_[-3(9.76e-07)]_53 chrXIII:507215-507595 8.30e-01 100 chrXI:519559-519829 6.60e-01 100 chrVIII:518181-518561 8.79e-01 100 chrV:141132-141413 7.56e-01 100 chrXVI:433959-434159 3.03e-02 100 chrXI:382223-382441 2.83e-05 19_[+3(1.05e-07)]_51 chrIII:125623-126003 7.47e-02 100 chrVII:882470-883989 9.72e-02 100 chrVI:101227-101581 5.07e-07 21_[-1(1.09e-09)]_58 chrIII:228655-229035 9.00e-01 100 chrXIII:762087-762467 3.50e-01 100 chrXIII:379197-379558 1.12e-03 60_[+1(1.75e-05)]_19 chrV:131007-131316 8.19e-04 21_[+1(1.39e-07)]_58 chrV:81572-81952 4.68e-01 100 chrX:120481-120581 4.71e-01 100 chrX:139194-139294 3.12e-01 100 chrXI:326299-327423 3.54e-01 100 chrXVI:786182-786562 2.78e-01 100 chrIV:229533-229712 9.78e-05 54_[+3(1.58e-08)]_16 chrXVI:678854-679263 5.86e-01 100 chrIV:355643-355976 4.43e-01 100 chrIX:255314-255553 7.72e-01 100 chrVI:83022-83600 6.62e-01 100 chrVI:191386-191787 2.04e-05 56_[+1(1.11e-08)]_23 chrXVI:644248-644628 2.09e-01 100 chrV:6188-6510 2.15e-07 46_[+3(1.46e-11)]_24 chrXI:322407-322737 3.90e-01 100 chrXV:384763-385021 4.35e-01 100 chrXV:305175-305555 8.93e-01 100 chrI:143106-143542 2.48e-02 3_[-2(3.03e-05)]_67 chrXIV:63810-64190 5.74e-01 100 chrVII:600969-601349 7.40e-01 100 chrXIV:726055-726384 2.68e-04 27_[+1(5.12e-07)]_52 chrVIII:62589-62925 2.11e-03 47_[-1(1.14e-06)]_32 chrV:250118-250530 7.06e-12 11_[-1(2.83e-08)]_13_[+2(6.22e-11)]_\ 25 chrX:378190-378290 1.92e-04 35_[-1(2.83e-08)]_44 chrVI:222817-223197 8.84e-01 100 chrXIV:65452-65832 9.33e-01 100 chrXVI:822671-823051 6.12e-01 100 chrXIII:352104-352431 4.74e-03 62_[-1(1.33e-06)]_17 chrI:71803-73345 7.05e-02 100 chrIV:340361-340558 5.86e-01 100 chrVIII:132935-133316 1.80e-05 11_[+1(3.79e-09)]_68 chrII:605255-605464 9.24e-01 100 chrXIII:130588-130968 9.69e-01 100 chrIV:626-818 9.20e-01 100 chrXV:253887-254093 7.16e-03 23_[-3(9.02e-06)]_47 chrXII:922164-922486 2.70e-03 66_[+3(1.27e-06)]_4 chrV:29225-29605 9.61e-01 100 chrVII:845480-845844 1.99e-12 36_[-1(1.13e-07)]_12_[+2(3.43e-12)]_\ 1 chrII:167984-168107 4.47e-04 36_[+3(8.16e-07)]_34 chrXVI:210101-210436 2.80e-01 100 chrXV:900904-901054 8.97e-01 100 chrXV:978824-979091 2.75e-01 100 chrIII:30-545 1.41e-09 8_[+3(1.46e-11)]_6_[+3(1.56e-13)]_\ 26 chrI:936-1316 2.00e-01 100 chrV:53546-53885 7.94e-02 50_[+3(4.52e-05)]_20 chrXIV:507250-507353 2.48e-01 100 chrV:135265-135668 1.52e-12 16_[-2(4.73e-13)]_14_[+1(3.30e-07)]_\ 19 chrV:311889-312264 7.20e-15 4_[-2(2.01e-12)]_14_[+1(6.11e-09)]_\ 31 chrIV:434065-434509 1.76e-11 34_[-2(1.67e-10)]_14_[+1(1.68e-08)]_\ 1 chrVII:959401-959544 8.59e-01 100 chrVII:783940-784320 2.12e-01 100 chrXV:161150-161335 4.06e-03 39_[-3(1.38e-06)]_31 chrV:266206-266512 9.49e-01 100 chrII:36246-36556 4.88e-03 46_[-1(1.33e-06)]_33 chrVIII:237726-238124 6.32e-03 43_[+1(1.33e-06)]_36 chrVIII:384259-384639 2.84e-01 100 chrXII:673811-674184 5.45e-01 100 chrVII:557097-557477 6.25e-02 14_[-3(6.34e-05)]_56 chrIV:357426-357806 8.22e-01 100 chrIX:257418-257673 1.22e-01 6_[+3(7.63e-05)]_64 chrX:523894-523994 5.12e-05 41_[+1(3.79e-09)]_38 chrXV:83241-83440 1.83e-01 100 chrV:424756-425136 4.31e-01 100 chrXII:930907-931072 8.13e-01 100 chrVII:784979-785165 9.93e-01 100 chrXIII:362888-363250 3.54e-03 44_[-1(1.14e-06)]_35 chrV:29426-29806 7.64e-01 100 chrXV:487276-487626 1.61e-04 37_[-1(2.06e-07)]_42 chrIV:1489583-1489838 3.32e-05 35_[-3(1.41e-05)]_35 chrXIV:783853-784171 5.46e-06 60_[-3(6.51e-10)]_10 chrXIV:759577-759957 9.67e-01 100 chrV:176917-177341 2.16e-10 53_[+2(9.15e-14)]_17 chrIX:255651-255834 2.90e-01 100 chrVII:1049627-1050007 6.47e-02 33_[-2(3.58e-05)]_37 chrII:168979-169359 5.16e-02 100 chrVII:277086-277362 4.90e-01 100 chrXII:951453-951588 2.23e-01 100 chrXV:505150-505449 4.58e-04 41_[+3(8.35e-08)]_29 chrVIII:291237-291617 2.30e-01 100 chrXIII:671595-671975 9.43e-01 100 chrIV:386567-386878 7.27e-01 100 chrX:73422-73522 1.49e-02 47_[+3(3.61e-06)]_23 chrII:135953-136302 1.12e-01 100 chrVI:916-1019 4.68e-02 100 chrIV:1150681-1151106 1.73e-05 77_[+1(1.11e-08)]_2 chrXIV:567933-568345 5.07e-07 25_[-1(1.09e-09)]_54 chrVIII:127065-127445 3.07e-01 100 chrXIV:577239-577376 5.51e-03 100 chrIV:411301-411607 3.14e-05 27_[+3(2.72e-08)]_43 chrX:119437-119537 4.02e-01 100 chrIV:509242-509622 1.75e-01 100 chrVII:700520-701215 9.76e-01 100 chrXI:783-1011 3.70e-01 100 chrXI:140824-141281 2.16e-10 23_[-2(9.15e-14)]_47 chrXIV:301706-301989 3.27e-01 100 chrVIII:521975-522201 8.06e-03 29_[+3(6.89e-06)]_41 chrIV:980886-981232 5.18e-05 25_[+1(3.79e-09)]_54 chrXII:489305-489578 2.84e-03 27_[-1(8.39e-07)]_52 chrIX:382562-382942 2.80e-01 100 chrXII:818451-818758 3.66e-03 54_[-1(2.51e-06)]_25 chrXV:622998-623200 6.31e-01 100 chrXV:274500-274908 5.45e-05 18_[-1(1.11e-08)]_61 chrXIII:253382-253552 7.59e-01 100 chrIX:300129-300480 1.12e-03 25_[+1(3.30e-07)]_54 chrII:377301-377402 4.78e-01 100 chrXIV:499313-499482 9.95e-02 100 chrXII:196948-197328 6.67e-01 100 chrXV:976230-976672 3.66e-09 19_[-1(1.06e-06)]_14_[+2(5.35e-10)]_\ 16 chrXVI:585873-586094 6.19e-01 100 chrXV:722971-723351 1.83e-01 100 chrVII:914886-915155 2.85e-01 100 chrXIV:230468-230657 3.23e-01 100 chrVII:346019-346497 5.64e-01 100 chrX:453385-453485 9.74e-01 100 chrXV:832401-832687 1.00e+00 100 chrXIII:296806-298856 2.23e-01 100 chrXII:713192-713521 4.13e-03 51_[-3(5.62e-07)]_19 chrXI:101472-101852 6.12e-01 100 chrXV:506161-506323 7.42e-01 100 chrVII:24648-25028 5.72e-01 100 chrXV:277613-277993 9.38e-01 100 chrVII:736167-736544 2.14e-11 34_[-1(2.27e-07)]_13_[+2(8.30e-12)]_\ 2 chrXII:198888-199687 5.16e-02 100 chrIX:129923-130164 7.45e-02 100 chrV:117662-118283 6.21e-01 100 chrVII:806654-807034 6.69e-02 100 chrI:142660-143196 5.28e-01 100 chrXIV:174401-174637 4.51e-01 100 chrVII:788369-788706 3.02e-04 27_[-3(9.38e-08)]_43 chrV:85130-85464 1.48e-02 49_[+3(7.38e-06)]_21 chrIX:248665-249412 6.48e-01 100 chrVI:224953-225133 1.01e-01 100 chrIII:115020-115400 9.95e-01 100 chrIX:316941-317127 7.88e-01 100 chrXII:815492-815872 2.83e-01 100 chrXV:29281-29661 1.25e-04 28_[-3(1.93e-06)]_42 chrXVI:109909-110045 2.72e-01 100 chrXV:161767-161982 1.03e-01 100 chrXII:283094-283530 3.66e-01 100 chrIV:467853-468233 2.15e-01 100 chrXIV:63149-63558 1.61e-04 [-3(5.82e-08)]_70 chrXII:650047-650172 8.11e-02 100 chrVII:9905-10285 9.22e-01 100 chrIV:358165-358353 1.29e-02 25_[-3(3.11e-06)]_45 chrX:520177-520277 8.61e-01 100 chrXVI:731965-732279 2.62e-02 28_[+3(1.03e-05)]_42 chrXII:932114-932447 1.03e-03 14_[-3(2.81e-07)]_56 chrXIV:560566-560949 1.40e-04 37_[+1(1.68e-08)]_42 chrIX:256718-257098 2.79e-01 100 chrIX:99679-99982 2.98e-03 33_[-3(2.46e-06)]_37 chrX:390944-391044 2.74e-03 39_[+1(1.06e-06)]_40 chrXVI:280617-281569 1.51e-01 100 chrIV:465182-465518 2.58e-02 100 chrXII:263623-263845 3.02e-01 100 chrXVI:642509-642716 4.32e-01 100 chrI:141644-141920 9.36e-01 100 chrXV:866592-866891 3.40e-02 100 chrVII:1000174-1000342 5.05e-01 100 chrXV:989093-989516 2.14e-01 100 chrX:216536-216636 7.61e-01 100 chrXIII:540338-540733 6.03e-01 100 chrVII:612527-612907 5.82e-01 100 chrX:227771-227871 1.20e-01 40_[+3(9.94e-05)]_30 chrXVI:822877-823257 3.61e-01 100 chrXIII:626479-626836 9.83e-01 100 chrXV:883044-883424 3.51e-03 38_[-1(7.12e-05)]_41 chrVII:774184-774506 1.67e-06 53_[-1(3.91e-10)]_26 chrXIII:550407-550787 8.74e-01 100 chrIX:380430-380898 3.67e-01 100 chrV:397477-397612 6.26e-01 100 chrVIII:114496-114876 8.56e-01 100 chrV:131690-132070 9.40e-01 100 chrV:151980-152214 9.99e-01 100 chrVII:958708-959088 9.55e-01 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10_[+3(4.85e-06)]_60 chrXIII:504723-505127 7.33e-04 19_[-1(1.13e-07)]_60 chrXII:369171-370278 7.47e-01 100 chrXVI:114413-114781 7.03e-01 100 chrXII:645821-646201 1.50e-01 100 chrXV:901579-901959 6.86e-01 100 chrXV:968127-968381 6.52e-02 100 chrXIII:671384-671764 3.01e-01 100 chrXV:911613-911993 7.69e-02 100 chrXII:1064869-1065322 4.55e-10 [-3(2.59e-09)]_3_[-3(5.50e-14)]_2_\ [-3(1.82e-08)]_5 chrXIV:716161-716534 9.49e-01 100 chrIII:127562-127885 1.61e-04 42_[-1(2.06e-07)]_37 chrVI:225550-225930 7.90e-01 100 chrXIII:550197-550577 4.42e-01 100 chrVII:990069-990361 8.52e-01 100 chrVII:846466-846846 9.81e-01 100 chrVII:364992-365437 9.59e-01 100 chrXIII:259054-259416 4.10e-05 33_[+1(3.79e-09)]_46 chrIV:1525320-1525636 2.37e-06 [-3(6.51e-10)]_70 chrXII:940936-941316 6.48e-01 100 chrXVI:405087-405544 8.45e-01 100 chrXVI:586622-587002 7.22e-01 100 chrII:612019-612399 6.19e-01 100 chrVII:480598-482972 8.39e-01 100 chrVI:84000-84297 1.24e-01 66_[+3(7.63e-05)]_4 chrXII:424047-424485 3.66e-01 100 chrIV:645071-645392 1.62e-04 22_[+1(2.83e-08)]_57 chrI:138985-139349 5.07e-07 34_[-1(1.09e-09)]_45 chrV:152758-153031 9.48e-01 100 chrI:182412-182778 3.14e-05 37_[+1(3.79e-09)]_42 chrXVI:188646-188947 7.20e-02 40_[+3(3.88e-05)]_30 chrXIII:631907-632287 7.50e-01 100 chrXII:737773-738011 8.94e-01 100 chrXVI:110510-110890 4.96e-02 100 chrXV:980537-980928 2.18e-11 [-1(5.83e-08)]_46_[+2(6.90e-11)]_3 chrVII:754-949 8.69e-01 100 chrXVI:55903-56468 1.56e-05 41_[-2(5.49e-09)]_29 chrIII:800-1030 6.38e-01 100 chrXVI:577187-577567 4.51e-01 100 chrIV:130627-130923 3.90e-03 36_[-3(6.78e-07)]_34 chrI:29-250 6.44e-05 68_[+3(2.46e-06)]_2 chrVII:706985-707350 1.73e-04 41_[+1(1.27e-08)]_38 chrXIII:463394-463668 1.86e-01 100 chrIII:130421-130801 9.07e-01 100 chrVII:999484-999864 9.15e-01 100 chrX:520378-520478 6.34e-01 100 chrXII:1017823-1018003 9.69e-01 100 chrXV:778898-779001 5.43e-01 100 chrVII:400273-400447 9.32e-01 100 chrVIII:504748-504898 1.37e-03 12_[-3(5.21e-06)]_58 chrIV:323261-323397 8.37e-01 100 chrXI:666445-666805 1.20e-07 61_[-3(1.46e-11)]_9 chrIV:946140-946601 3.77e-05 42_[+2(5.14e-09)]_28 chrXI:308062-308389 1.81e-04 21_[+1(2.83e-08)]_58 chrIX:254253-254528 1.35e-03 3_[-3(4.63e-07)]_20_[-3(2.88e-06)]_\ 17 chrIII:1048-1287 8.19e-01 100 chrVI:4460-4973 1.73e-08 49_[+3(4.10e-12)]_21 chrXV:24515-24967 3.17e-01 100 chrIV:410215-410565 7.98e-06 38_[-1(3.91e-10)]_41 chrXV:113624-113947 5.35e-05 66_[-1(1.68e-08)]_13 chrXII:897775-897962 3.87e-03 39_[+3(9.76e-07)]_31 chrVII:27-185 7.62e-02 100 chrXII:729547-729927 6.11e-01 100 chrIV:339019-339399 7.00e-01 100 chrXIII:761877-762237 9.91e-01 100 chrVI:221819-222025 4.75e-05 33_[-3(1.03e-08)]_37 chrXV:1027956-1028438 8.53e-01 100 chrVII:422928-423319 7.33e-04 18_[-1(1.13e-07)]_61 chrI:229465-229713 9.94e-01 100 chrXV:300873-301360 5.07e-07 30_[-1(1.09e-09)]_49 chrXII:202251-202448 6.90e-01 100 chrXII:1019041-1019321 1.27e-01 21_[-3(8.35e-05)]_49 chrIV:541272-541822 6.94e-01 100 chrXIV:102552-102860 2.84e-04 59_[-1(2.06e-07)]_20 chrXV:22116-22496 8.82e-01 100 chrXI:355322-355720 4.53e-01 100 chrXI:25363-25743 9.42e-01 100 chrIV:915167-915547 5.78e-01 100 chrXII:605154-605576 4.01e-01 100 chrXV:867857-868114 2.29e-01 100 chrVII:625173-625539 9.30e-01 100 chrVI:223973-224175 1.74e-03 18_[-3(6.78e-07)]_52 chrXIV:628790-628965 5.63e-01 100 chrIV:884230-884582 3.29e-06 4_[-1(3.79e-09)]_75 chrXII:588956-589336 4.41e-01 100 chrVII:535497-535877 9.95e-01 100 chrXIII:626479-626839 9.83e-01 100 chrVIII:388782-389169 5.07e-07 49_[+1(1.09e-09)]_30 chrXV:710042-710335 1.28e-02 62_[-1(5.63e-06)]_17 chrIII:197464-197844 4.17e-01 100 chrV:86452-86785 4.98e-05 35_[-1(3.79e-09)]_44 chrVII:122082-122474 9.86e-04 40_[-1(3.30e-07)]_39 chrVII:649009-649337 5.04e-04 11_[-3(1.48e-07)]_59 chrXI:99772-99945 3.19e-01 100 chrII:9421-9780 8.44e-05 32_[-1(5.12e-07)]_47 chrXIV:739298-739698 6.17e-01 100 chrXV:29837-30217 5.08e-03 19_[+3(4.75e-05)]_51 chrXIII:760965-761345 7.38e-01 100 chrIX:324153-324538 5.51e-06 15_[-2(1.99e-08)]_55 chrXVI:645354-645657 5.29e-01 100 chrIV:802633-802979 1.76e-04 25_[+1(2.83e-08)]_54 chrVIII:116010-116348 3.19e-05 29_[+1(1.68e-08)]_50 chrXVI:435782-436154 7.46e-05 25_[+1(1.27e-08)]_54 chrXIV:96103-96489 6.50e-12 2_[-2(8.44e-11)]_13_[+1(2.19e-08)]_\ 34 chrXIV:657842-658222 3.70e-01 100 chrVIII:562284-562628 1.17e-05 45_[-3(6.51e-10)]_25 chrXV:94045-94206 9.59e-01 100 chrXIII:552920-553187 1.62e-01 100 chrII:428324-428704 1.38e-01 100 chrXV:353944-354290 5.85e-06 25_[+1(1.68e-08)]_54 chrII:326702-327044 1.93e-06 21_[+1(3.61e-07)]_58 chrXIII:551392-551749 1.33e-03 8_[-3(1.48e-07)]_62 chrXVI:699977-700324 7.54e-05 30_[+3(9.38e-08)]_40 chrII:557182-557287 2.23e-01 100 chrXVI:432919-433325 1.89e-01 100 chrVII:555378-555642 3.92e-03 51_[-3(2.82e-05)]_19 chrXV:438479-438938 1.74e-07 42_[+2(1.25e-10)]_28 chrXII:92374-92755 5.07e-07 33_[-1(1.09e-09)]_46 chrX:123521-123621 9.67e-01 100 chrVIII:466804-467143 1.36e-03 66_[-1(1.53e-07)]_13 chrVIII:382967-383303 1.21e-04 1_[-3(7.41e-08)]_69 chrVII:661574-661913 4.05e-04 55_[-1(1.53e-07)]_24 chrV:301610-301990 7.46e-01 100 chrX:76198-76298 7.26e-01 100 chrXIII:195946-196394 5.07e-07 29_[+1(1.09e-09)]_50 chrXII:370486-371126 1.23e-01 100 chrV:491066-491468 2.91e-02 20_[-2(5.24e-05)]_50 chrIV:1402999-1403360 6.26e-01 100 chrXII:949604-949778 8.95e-01 100 chrXII:27-211 8.90e-01 100 chrIV:217257-217463 7.82e-04 [+3(8.16e-07)]_70 chrIII:102902-103282 2.07e-02 100 chrXV:409660-409798 9.58e-01 100 chrVII:371272-371464 6.71e-06 33_[+3(4.19e-09)]_37 chrXIV:104645-105060 1.55e-11 2_[-1(1.68e-08)]_14_[+2(1.67e-10)]_\ 33 chrXVI:406191-406534 1.12e-04 55_[+3(2.08e-08)]_15 chrV:78885-79124 5.25e-01 100 chrV:174706-175024 5.29e-01 100 chrXIV:758244-758624 9.73e-01 100 chrVII:110451-110875 1.36e-07 19_[-2(2.48e-08)]_13_[+1(1.14e-06)]_\ 17 chrXVI:214875-215160 6.75e-01 100 chrXIV:88957-89719 9.24e-01 100 chrXVI:689402-689845 2.54e-01 100 chrXVI:572099-572478 9.53e-13 30_[-1(1.13e-07)]_12_[+2(3.43e-12)]_\ 7 chrVIII:296898-297194 1.02e-02 24_[-3(2.39e-05)]_46 chrII:405700-406019 6.58e-04 68_[-1(2.27e-07)]_11 chrXIII:183826-184129 3.32e-04 20_[+1(1.13e-07)]_59 chrXII:656823-657156 2.28e-12 2_[-2(1.41e-09)]_14_[+1(3.91e-10)]_\ 33 chrXII:810146-810526 9.41e-01 100 chrXVI:769022-769475 5.13e-08 16_[-2(1.25e-10)]_54 chrXIII:420461-420825 1.72e-10 2_[-2(1.12e-09)]_15_[+1(2.83e-08)]_\ 32 chrXIII:888710-889090 7.83e-01 100 chrXV:161920-162300 4.72e-01 100 chrIV:1278673-1279039 1.83e-01 100 chrXII:214804-215132 3.70e-06 16_[+1(6.11e-09)]_63 chrIV:568712-569053 6.24e-04 49_[-1(2.27e-07)]_30 chrXIV:576942-577137 6.14e-02 100 chrIV:1489150-1489588 9.87e-01 100 chrIII:123438-123797 3.34e-13 17_[-2(8.30e-12)]_13_[+1(1.39e-07)]_\ 19 chrXIII:837746-838109 9.36e-03 50_[-1(5.63e-06)]_29 chrXV:407672-408079 1.49e-01 100 chrIV:721758-722164 8.36e-02 100 chrVIII:126631-126809 8.53e-01 100 chrV:69104-69334 3.81e-03 100 chrXIV:771909-772408 8.38e-03 41_[-3(2.10e-06)]_29 chrXI:46656-46952 1.24e-05 31_[+1(3.79e-09)]_48 chrII:375260-375406 2.98e-01 100 chrII:301251-301663 7.01e-01 100 chrXI:100321-100701 7.04e-01 100 chrIX:316174-316547 4.34e-04 38_[+3(2.28e-07)]_32 chrXII:592434-592788 6.38e-06 37_[+1(1.59e-09)]_42 chrVIII:5157-5537 9.79e-01 100 chrVII:766143-766483 1.22e-01 100 chrIII:121510-121890 3.04e-01 100 chrVII:727854-728052 4.18e-01 100 chrXV:80310-80690 6.23e-01 100 chrIV:1156416-1156589 4.34e-01 100 chrXVI:453409-453789 3.86e-01 100 chrV:27727-28107 2.68e-01 100 chrXV:416802-417182 5.31e-01 100 chrX:652203-652303 6.54e-01 100 chrVI:157791-158169 6.32e-03 56_[+1(1.33e-06)]_23 chrIV:1345352-1345678 3.10e-01 100 chrVII:23903-24283 1.48e-01 100 chrV:396242-396510 7.59e-04 49_[+3(1.65e-07)]_21 chrIV:1270007-1270181 1.85e-01 100 chrXII:794149-795189 9.05e-02 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************