******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrXV:505094-505484 1.0000 100 chrI:31-214 1.0000 100 chrIV:720743-721187 1.0000 100 chrVII:328364-328967 1.0000 100 chrV:362991-363137 1.0000 100 chrXII:796439-796867 1.0000 100 chrVI:157730-158204 1.0000 100 chrV:79544-79988 1.0000 100 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chrVIII:381433-382124 1.0000 100 chrXIII:168590-169122 1.0000 100 chrXVI:75471-75691 1.0000 100 chrXII:589657-590101 1.0000 100 chrVIII:150256-150700 1.0000 100 chrVII:648957-649418 1.0000 100 chrXIII:372324-372762 1.0000 100 chrIV:652745-653189 1.0000 100 chrXIII:501096-501540 1.0000 100 chrXVI:279766-280210 1.0000 100 chrXVI:699950-700347 1.0000 100 chrIII:122051-122495 1.0000 100 chrVIII:382238-382834 1.0000 100 chrVII:601153-601273 1.0000 100 chrXI:159194-159496 1.0000 100 chrXII:818802-819173 1.0000 100 chrXII:731885-732300 1.0000 100 chrX:415826-415926 1.0000 100 chrXIV:783856-784183 1.0000 100 chrIV:117153-117566 1.0000 100 chrXV:22096-22540 1.0000 100 chrX:538351-538451 1.0000 100 chrII:558072-558211 1.0000 100 chrXII:687612-688162 1.0000 100 chrVII:310450-310939 1.0000 100 chrXIV:569720-570091 1.0000 100 chrX:121465-121565 1.0000 100 chrIV:579052-579383 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 545 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 54500 N= 545 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.316 C 0.184 G 0.184 T 0.316 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MIG1/background): A 0.318 C 0.182 G 0.182 T 0.318 ******************************************************************************** ******************************************************************************** MOTIF YSDGRAGRTCMBSGGTTCGATYC MEME-1 width = 23 sites = 78 llr = 1387 E-value = 5.7e-271 ******************************************************************************** -------------------------------------------------------------------------------- Motif YSDGRAGRTCMBSGGTTCGATYC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::3246242:4:12::::3a1:: pos.-specific C 372:111:18534::::a::24a probability G 23354376::1357a:::7:1:: matrix T 5:221:::72:41::aa:::56: bits 2.5 * * * 2.2 * * * 2.0 * * * 1.7 * ** * * Relative 1.5 * * ****** * Entropy 1.2 * * ******* * (25.6 bits) 1.0 * ** * ******* ** 0.7 * *** * ******** ** 0.5 ** ***************** ** 0.2 ** ******************** 0.0 ----------------------- Multilevel TCGGGAGGTCCTGGGTTCGATTC consensus CGATAG AATACC A CC sequence TA G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSDGRAGRTCMBSGGTTCGATYC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------- chrXIV:569720-570091 - 24 2.99e-11 GTGCTAATAA CGCGGGGATCAGCGGTTCGATCC CGCTAGAGAC chrXII:1051859-1052339 - 34 2.99e-11 GTGCTAATAA CGCGGGGATCAGCGGTTCGATCC CGCTAGAGAC chrXVI:880065-880553 - 49 2.99e-11 GTGCTAATAA CGCGGGGATCAGCGGTTCGATCC CGCTAGAGAC chrIX:183259-183704 - 21 2.99e-11 GTGCTAATAA CGCGGGGATCAGCGGTTCGATCC CGCTAGAGAC chrIX:210470-210954 + 42 2.99e-11 GTGCTAATAA CGCGGGGATCAGCGGTTCGATCC CGCTAGAGAC chrIV:667780-668262 - 48 2.99e-11 GTGCTAATAA CGCGGGGATCAGCGGTTCGATCC CGCTAGAGAC chrXVI:559979-560519 - 11 1.77e-10 GGTCAAGTTA TCTGGAGGTCCTGTGTTCGATCC ACAGAATTCG chrXVI:622344-622839 - 11 1.77e-10 GGTCAAGTTA TCTGGAGGTCCTGTGTTCGATCC ACAGAATTCG chrVI:157730-158204 - 11 1.77e-10 GGTCAAGTTA TCTGGAGGTCCTGTGTTCGATCC ACAGAATTCG chrXV:853992-854441 - 33 2.36e-10 TCCCTTGCAA GGAAGAGGTCATCGGTTCGATTC CGGTTGCGTC chrV:311867-312284 - 10 2.36e-10 TCCCTTGCAA GGAAGAGGTCATCGGTTCGATTC CGGTTGCGT chrI:166032-166558 + 60 2.36e-10 TCCCTTGCAA GGAAGAGGTCATCGGTTCGATTC CGGTTGCGTC chrVII:736146-736674 + 17 3.13e-10 TGACTTCTAA TCAGAAGATTATGGGTTCGACCC CCATCGTGAG chrXI:162268-162764 - 33 3.13e-10 TGACTTCTAA TCAGAAGATTATGGGTTCGACCC CCATCGTGAG chrX:374233-374333 - 68 3.13e-10 TGACTTCTAA TCAGAAGATTATGGGTTCGACCC CCATCGTGAG chrII:405677-406184 + 35 3.13e-10 TGACTTCTAA TCAGAAGATTATGGGTTCGACCC CCATCGTGAG chrV:138456-139034 + 8 3.13e-10 CTTCTAA TCAGAAGATTATGGGTTCGACCC CCATCGTGAG chrVII:828518-828993 - 30 3.13e-10 TGACTTCTAA TCAGAAGATTATGGGTTCGACCC CCATCGTGAG chrIV:568671-569216 + 26 3.13e-10 TGACTTCTAA TCAGAAGATTATGGGTTCGACCC CCATCGTGAG chrXIII:747732-748165 - 6 3.13e-10 TGACTTCTAA TCAGAAGATTATGGGTTCGACCC CCATC chrV:487143-487578 - 33 3.59e-10 CACGCTTTCA CCGTGGAGACCGGGGTTCGACTC CCCGTATCGG chrVII:401367-401790 - 11 3.59e-10 CACGCTTTCA CCGTGGAGACCGGGGTTCGACTC CCCGTATCGG chrV:354681-355313 + 24 3.59e-10 CACGCTTTCA CCGTGGAGACCGGGGTTCGACTC CCCGTATCGG chrVII:541559-542165 + 75 3.59e-10 CACGCTTTCA CCGTGGAGACCGGGGTTCGACTC CCC chrXI:140773-141342 - 23 3.59e-10 CACGCTTTCA CCGTGGAGACCGGGGTTCGACTC CCCGTATCGG chrXII:796949-797486 + 48 3.59e-10 CACGCTTTCA CCGTGGAGACCGGGGTTCGACTC CCCGTATCGG chrXIV:567899-568467 + 50 5.37e-10 GACAAAGCAT GCGAGAGGCCCTGGGTTCAATTC CCAGCTCGCC chrXV:980485-981057 + 32 5.37e-10 AACAAAGCAT GCGAGAGGCCCTGGGTTCAATTC CCAGCTCGCC chrXV:300860-301459 + 55 5.37e-10 GACAAAGCAT GCGAGAGGCCCTGGGTTCAATTC CCAGCTCGCC chrXII:687612-688162 - 34 6.95e-10 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCC TGGGCGAAAT chrXI:46546-46993 - 28 6.95e-10 GCACTCGTAA TGCGGGGATCGTGGGTTCAATTC CCACAGAGGG chrX:378161-378261 + 76 6.95e-10 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCC TG chrXI:307886-308393 - 67 6.95e-10 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCC TGGGCGAAAT chrV:438507-438940 + 66 6.95e-10 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCC TGGGCGAAAT chrXIII:420332-420881 - 44 6.95e-10 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCC TGGGCGAAAT chrXI:379489-379902 + 74 6.95e-10 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCC TGGG chrIV:1075309-1075716 - 22 6.95e-10 GCCTTCACAC GGCAAAGGTCCCGAGTTCGATCC TCGGTTGGAA chrX:531623-531723 + 41 8.93e-10 AACGTTGCCA TCGTTGGGCCCCCGGTTCGATTC CGGGCTTGCG chrVII:845450-845895 + 63 8.93e-10 AACGTTGCCA TCGTTGGGCCCCCGGTTCGATTC CGGGCTTGCG chrXIII:183695-184139 - 43 8.93e-10 AACGTTGCCA TCGTTGGGCCCCCGGTTCGATTC CGGGCTTGCG chrVII:774143-774588 + 72 1.82e-09 CCCTTAGCAT GGGAGAGGTCTCCGGTTCGATTC CGGACT chrXI:219700-220127 + 70 1.82e-09 CCCTTAGCAT GGGAGAGGTCTCCGGTTCGATTC CGGACTCG chrVII:185501-185960 - 46 2.04e-09 TGACTCTTAA TCATAAGGTTAGGGGTTCGAGCC CCCTACAGGG chrVII:876189-876718 + 29 2.04e-09 TGACTCTTAA TCATAAGGTTAGGGGTTCGAGCC CCCTACAGGG chrV:135167-135712 - 48 2.04e-09 TGACTCTTAA TCATAAGGTTAGGGGTTCGAGCC CCCTACAGGG chrIII:295293-295755 + 48 2.56e-09 ACACTAGTAA TGTGGAGATCATCGGTTCAAATC CGATTGGAAG chrIX:174850-175332 + 28 2.56e-09 ACACTAGTAA TGTGGAGATCATCGGTTCAAATC CGATTGGAAG chrIV:433987-434564 - 51 2.56e-09 ACACTAGTAA TGTGGAGATCATCGGTTCAAATC CGATTGGAAG chrXV:113582-114045 + 77 2.56e-09 ACACTAGTAA TGTGGAGATCATCGGTTCAAATC C chrII:266180-266676 + 38 2.56e-09 ACACTAGTAA TGTGGAGATCATCGGTTCAAATC CGATTGGAAG chrXIV:104611-105160 + 8 2.56e-09 CTAGTAA TGTGGAGATCATCGGTTCAAATC CGATTGGAAG chrV:130862-131352 - 37 3.18e-09 TCGGTTTTGA TCCGAACAACCCCGGTTCGAATC CGGGTAAGAC chrXIV:96047-96503 - 28 4.83e-09 CACCCTTCCA AGGTGGGGACACGGGTTCGATTC TCGTACCGCT chrVII:779402-779850 + 77 4.83e-09 CACCCTTCCA AGGTGGGGACACGGGTTCGATTC T chrXVI:768943-769479 - 58 8.71e-09 AGCAAGGATA CCGAAATGTCAGGGGTTCGAGCC CCCTATGAGG chrXIII:168590-169122 + 43 9.58e-09 CACTACGAAA TCTTGAGATCGGGCGTTCGACTC GCCCCCGGGA chrIV:946123-946622 + 44 9.58e-09 CACTACGAAA TCTTGAGATCGGGCGTTCGACTC GCCCCCGGGA chrXIII:808080-808532 - 2 1.80e-08 TCGGTTCTGA TCCGAACAACCCCAGTTCGAATC C chrX:390876-390976 - 18 1.96e-08 AGTCTCATAA TCTGAAGGTCGAGAGTTCGAACC TCCCCTGGAG chrIV:1175642-1176177 + 8 1.96e-08 CTCATAA TCTGAAGGTCGAGAGTTCGAACC TCCCCTGGAG chrVI:137280-137754 - 31 2.13e-08 CGACTGTTAA TCGCAAGATCGTGAGTTCAACCC TCACTGGGGT chrXI:74403-74881 + 71 2.13e-08 CGACTGTTAA TCGCAAGATCGTGAGTTCAACCC TCACTGG chrVII:730937-731426 + 45 2.13e-08 CGACTGTTAA TCGCAAGATCGTGAGTTCAACCC TCACTGGGGT chrV:492147-492609 - 36 2.74e-08 TGGCTACGAA CCAGAAGATTCCAGGTTCAAGTC CTGGCGGGGA chrXII:374157-374692 + 19 2.74e-08 TGGCTACGAA CCAGAAGATTCCAGGTTCAAGTC CTGGCGGGGA chrIV:619721-620224 - 59 2.74e-08 TGGCTACGAA CCAGAAGATTCCAGGTTCAAGTC CTGGCGGGGA chrXVI:55880-56521 - 31 3.77e-08 AAGATTGCAA TCGAAGGGTTGCAGGTTCAATTC CTGTCCGTTT chrXIII:362877-363386 + 20 4.07e-08 ATCGTTGTGG CCGATGAAACCCTGGTTCGATTC TAGGAGATGG chrVII:319590-320053 + 47 4.07e-08 ATCGTTGTGG CCGATGAAACCCTGGTTCGATTC TAGGAGATGG chrVII:110400-110908 - 33 4.07e-08 ATCGTTGTGG CCGATGAAACCCTGGTTCGATTC TAGGAGATGG chrV:207158-207660 + 35 4.07e-08 ATCGTTGTGG CCGATGAAACCCTGGTTCGATTC TAGGAGATGG chrXVI:744094-744557 + 46 9.03e-08 GCACTTGTAA TGCAAAGGTCGTTAGTTCAATTC TGACAGGTGG chrVII:706921-707368 - 26 1.03e-07 AGATTGCAAA TCTGTTGGTCCTTAGTTCGATCC TGAGTGCGAG chrX:541310-541410 + 55 1.52e-07 GCGCTTGTCG CGTGCCAGATCGGGGTTCAATTC CCCGTCGCGG chrVII:544405-544859 - 7 1.52e-07 GCGCTTGTCG CGTGCCAGATCGGGGTTCAATTC CCCGTC chrXIII:463360-463907 + 8 1.52e-07 CTTGTCG CGTGCCAGATCGGGGTTCAATTC CCCGTCGCGG chrIX:324061-324558 - 56 1.52e-07 GCGCTTGTCG CGTGCCAGATCGGGGTTCAATTC CCCGTCGCGG chrV:99900-100401 + 70 1.19e-06 GGGCTCATAA CCCTGATGTCCTCGGATCGAAAC CGAGCGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSDGRAGRTCMBSGGTTCGATYC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:569720-570091 3e-11 23_[-1]_54 chrXII:1051859-1052339 3e-11 33_[-1]_44 chrXVI:880065-880553 3e-11 48_[-1]_29 chrIX:183259-183704 3e-11 20_[-1]_57 chrIX:210470-210954 3e-11 41_[+1]_36 chrIV:667780-668262 3e-11 47_[-1]_30 chrXVI:559979-560519 1.8e-10 10_[-1]_67 chrXVI:622344-622839 1.8e-10 10_[-1]_67 chrVI:157730-158204 1.8e-10 10_[-1]_67 chrXV:853992-854441 2.4e-10 32_[-1]_45 chrV:311867-312284 2.4e-10 9_[-1]_68 chrI:166032-166558 2.4e-10 59_[+1]_18 chrVII:736146-736674 3.1e-10 16_[+1]_61 chrXI:162268-162764 3.1e-10 32_[-1]_45 chrX:374233-374333 3.1e-10 67_[-1]_10 chrII:405677-406184 3.1e-10 34_[+1]_43 chrV:138456-139034 3.1e-10 7_[+1]_70 chrVII:828518-828993 3.1e-10 29_[-1]_48 chrIV:568671-569216 3.1e-10 25_[+1]_52 chrXIII:747732-748165 3.1e-10 5_[-1]_72 chrV:487143-487578 3.6e-10 32_[-1]_45 chrVII:401367-401790 3.6e-10 10_[-1]_67 chrV:354681-355313 3.6e-10 23_[+1]_54 chrVII:541559-542165 3.6e-10 74_[+1]_3 chrXI:140773-141342 3.6e-10 22_[-1]_55 chrXII:796949-797486 3.6e-10 47_[+1]_30 chrXIV:567899-568467 5.4e-10 49_[+1]_28 chrXV:980485-981057 5.4e-10 31_[+1]_46 chrXV:300860-301459 5.4e-10 54_[+1]_23 chrXII:687612-688162 6.9e-10 33_[-1]_44 chrXI:46546-46993 6.9e-10 27_[-1]_50 chrX:378161-378261 6.9e-10 75_[+1]_2 chrXI:307886-308393 6.9e-10 66_[-1]_11 chrV:438507-438940 6.9e-10 65_[+1]_12 chrXIII:420332-420881 6.9e-10 43_[-1]_34 chrXI:379489-379902 6.9e-10 73_[+1]_4 chrIV:1075309-1075716 6.9e-10 21_[-1]_56 chrX:531623-531723 8.9e-10 40_[+1]_37 chrVII:845450-845895 8.9e-10 62_[+1]_15 chrXIII:183695-184139 8.9e-10 42_[-1]_35 chrVII:774143-774588 1.8e-09 71_[+1]_6 chrXI:219700-220127 1.8e-09 69_[+1]_8 chrVII:185501-185960 2e-09 45_[-1]_32 chrVII:876189-876718 2e-09 28_[+1]_49 chrV:135167-135712 2e-09 47_[-1]_30 chrIII:295293-295755 2.6e-09 47_[+1]_30 chrIX:174850-175332 2.6e-09 27_[+1]_50 chrIV:433987-434564 2.6e-09 50_[-1]_27 chrXV:113582-114045 2.6e-09 76_[+1]_1 chrII:266180-266676 2.6e-09 37_[+1]_40 chrXIV:104611-105160 2.6e-09 7_[+1]_70 chrV:130862-131352 3.2e-09 36_[-1]_41 chrXIV:96047-96503 4.8e-09 27_[-1]_50 chrVII:779402-779850 4.8e-09 76_[+1]_1 chrXVI:768943-769479 8.7e-09 57_[-1]_20 chrXIII:168590-169122 9.6e-09 42_[+1]_35 chrIV:946123-946622 9.6e-09 43_[+1]_34 chrXIII:808080-808532 1.8e-08 1_[-1]_76 chrX:390876-390976 2e-08 17_[-1]_60 chrIV:1175642-1176177 2e-08 7_[+1]_70 chrVI:137280-137754 2.1e-08 30_[-1]_47 chrXI:74403-74881 2.1e-08 70_[+1]_7 chrVII:730937-731426 2.1e-08 44_[+1]_33 chrV:492147-492609 2.7e-08 35_[-1]_42 chrXII:374157-374692 2.7e-08 18_[+1]_59 chrIV:619721-620224 2.7e-08 58_[-1]_19 chrXVI:55880-56521 3.8e-08 30_[-1]_47 chrXIII:362877-363386 4.1e-08 19_[+1]_58 chrVII:319590-320053 4.1e-08 46_[+1]_31 chrVII:110400-110908 4.1e-08 32_[-1]_45 chrV:207158-207660 4.1e-08 34_[+1]_43 chrXVI:744094-744557 9e-08 45_[+1]_32 chrVII:706921-707368 1e-07 25_[-1]_52 chrX:541310-541410 1.5e-07 54_[+1]_23 chrVII:544405-544859 1.5e-07 6_[-1]_71 chrXIII:463360-463907 1.5e-07 7_[+1]_70 chrIX:324061-324558 1.5e-07 55_[-1]_22 chrV:99900-100401 1.2e-06 69_[+1]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSDGRAGRTCMBSGGTTCGATYC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YSDGRAGRTCMBSGGTTCGATYC width=23 seqs=78 chrXIV:569720-570091 ( 24) CGCGGGGATCAGCGGTTCGATCC 1 chrXII:1051859-1052339 ( 34) CGCGGGGATCAGCGGTTCGATCC 1 chrXVI:880065-880553 ( 49) CGCGGGGATCAGCGGTTCGATCC 1 chrIX:183259-183704 ( 21) CGCGGGGATCAGCGGTTCGATCC 1 chrIX:210470-210954 ( 42) CGCGGGGATCAGCGGTTCGATCC 1 chrIV:667780-668262 ( 48) CGCGGGGATCAGCGGTTCGATCC 1 chrXVI:559979-560519 ( 11) TCTGGAGGTCCTGTGTTCGATCC 1 chrXVI:622344-622839 ( 11) TCTGGAGGTCCTGTGTTCGATCC 1 chrVI:157730-158204 ( 11) TCTGGAGGTCCTGTGTTCGATCC 1 chrXV:853992-854441 ( 33) GGAAGAGGTCATCGGTTCGATTC 1 chrV:311867-312284 ( 10) GGAAGAGGTCATCGGTTCGATTC 1 chrI:166032-166558 ( 60) GGAAGAGGTCATCGGTTCGATTC 1 chrVII:736146-736674 ( 17) TCAGAAGATTATGGGTTCGACCC 1 chrXI:162268-162764 ( 33) TCAGAAGATTATGGGTTCGACCC 1 chrX:374233-374333 ( 68) TCAGAAGATTATGGGTTCGACCC 1 chrII:405677-406184 ( 35) TCAGAAGATTATGGGTTCGACCC 1 chrV:138456-139034 ( 8) TCAGAAGATTATGGGTTCGACCC 1 chrVII:828518-828993 ( 30) TCAGAAGATTATGGGTTCGACCC 1 chrIV:568671-569216 ( 26) TCAGAAGATTATGGGTTCGACCC 1 chrXIII:747732-748165 ( 6) TCAGAAGATTATGGGTTCGACCC 1 chrV:487143-487578 ( 33) CCGTGGAGACCGGGGTTCGACTC 1 chrVII:401367-401790 ( 11) CCGTGGAGACCGGGGTTCGACTC 1 chrV:354681-355313 ( 24) CCGTGGAGACCGGGGTTCGACTC 1 chrVII:541559-542165 ( 75) CCGTGGAGACCGGGGTTCGACTC 1 chrXI:140773-141342 ( 23) CCGTGGAGACCGGGGTTCGACTC 1 chrXII:796949-797486 ( 48) CCGTGGAGACCGGGGTTCGACTC 1 chrXIV:567899-568467 ( 50) GCGAGAGGCCCTGGGTTCAATTC 1 chrXV:980485-981057 ( 32) GCGAGAGGCCCTGGGTTCAATTC 1 chrXV:300860-301459 ( 55) GCGAGAGGCCCTGGGTTCAATTC 1 chrXII:687612-688162 ( 34) GCAGAACGTCCCCAGTTCGATCC 1 chrXI:46546-46993 ( 28) TGCGGGGATCGTGGGTTCAATTC 1 chrX:378161-378261 ( 76) GCAGAACGTCCCCAGTTCGATCC 1 chrXI:307886-308393 ( 67) GCAGAACGTCCCCAGTTCGATCC 1 chrV:438507-438940 ( 66) GCAGAACGTCCCCAGTTCGATCC 1 chrXIII:420332-420881 ( 44) GCAGAACGTCCCCAGTTCGATCC 1 chrXI:379489-379902 ( 74) GCAGAACGTCCCCAGTTCGATCC 1 chrIV:1075309-1075716 ( 22) GGCAAAGGTCCCGAGTTCGATCC 1 chrX:531623-531723 ( 41) TCGTTGGGCCCCCGGTTCGATTC 1 chrVII:845450-845895 ( 63) TCGTTGGGCCCCCGGTTCGATTC 1 chrXIII:183695-184139 ( 43) TCGTTGGGCCCCCGGTTCGATTC 1 chrVII:774143-774588 ( 72) GGGAGAGGTCTCCGGTTCGATTC 1 chrXI:219700-220127 ( 70) GGGAGAGGTCTCCGGTTCGATTC 1 chrVII:185501-185960 ( 46) TCATAAGGTTAGGGGTTCGAGCC 1 chrVII:876189-876718 ( 29) TCATAAGGTTAGGGGTTCGAGCC 1 chrV:135167-135712 ( 48) TCATAAGGTTAGGGGTTCGAGCC 1 chrIII:295293-295755 ( 48) TGTGGAGATCATCGGTTCAAATC 1 chrIX:174850-175332 ( 28) TGTGGAGATCATCGGTTCAAATC 1 chrIV:433987-434564 ( 51) TGTGGAGATCATCGGTTCAAATC 1 chrXV:113582-114045 ( 77) TGTGGAGATCATCGGTTCAAATC 1 chrII:266180-266676 ( 38) TGTGGAGATCATCGGTTCAAATC 1 chrXIV:104611-105160 ( 8) TGTGGAGATCATCGGTTCAAATC 1 chrV:130862-131352 ( 37) TCCGAACAACCCCGGTTCGAATC 1 chrXIV:96047-96503 ( 28) AGGTGGGGACACGGGTTCGATTC 1 chrVII:779402-779850 ( 77) AGGTGGGGACACGGGTTCGATTC 1 chrXVI:768943-769479 ( 58) CCGAAATGTCAGGGGTTCGAGCC 1 chrXIII:168590-169122 ( 43) TCTTGAGATCGGGCGTTCGACTC 1 chrIV:946123-946622 ( 44) TCTTGAGATCGGGCGTTCGACTC 1 chrXIII:808080-808532 ( 2) TCCGAACAACCCCAGTTCGAATC 1 chrX:390876-390976 ( 18) TCTGAAGGTCGAGAGTTCGAACC 1 chrIV:1175642-1176177 ( 8) TCTGAAGGTCGAGAGTTCGAACC 1 chrVI:137280-137754 ( 31) TCGCAAGATCGTGAGTTCAACCC 1 chrXI:74403-74881 ( 71) TCGCAAGATCGTGAGTTCAACCC 1 chrVII:730937-731426 ( 45) TCGCAAGATCGTGAGTTCAACCC 1 chrV:492147-492609 ( 36) CCAGAAGATTCCAGGTTCAAGTC 1 chrXII:374157-374692 ( 19) CCAGAAGATTCCAGGTTCAAGTC 1 chrIV:619721-620224 ( 59) CCAGAAGATTCCAGGTTCAAGTC 1 chrXVI:55880-56521 ( 31) TCGAAGGGTTGCAGGTTCAATTC 1 chrXIII:362877-363386 ( 20) CCGATGAAACCCTGGTTCGATTC 1 chrVII:319590-320053 ( 47) CCGATGAAACCCTGGTTCGATTC 1 chrVII:110400-110908 ( 33) CCGATGAAACCCTGGTTCGATTC 1 chrV:207158-207660 ( 35) CCGATGAAACCCTGGTTCGATTC 1 chrXVI:744094-744557 ( 46) TGCAAAGGTCGTTAGTTCAATTC 1 chrVII:706921-707368 ( 26) TCTGTTGGTCCTTAGTTCGATCC 1 chrX:541310-541410 ( 55) CGTGCCAGATCGGGGTTCAATTC 1 chrVII:544405-544859 ( 7) CGTGCCAGATCGGGGTTCAATTC 1 chrXIII:463360-463907 ( 8) CGTGCCAGATCGGGGTTCAATTC 1 chrIX:324061-324558 ( 56) CGTGCCAGATCGGGGTTCAATTC 1 chrV:99900-100401 ( 70) CCCTGATGTCCTCGGATCGAAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSDGRAGRTCMBSGGTTCGATYC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 23 n= 42510 bayes= 8.48886 E= 5.7e-271 -363 82 8 54 -1293 188 88 -1293 -11 -24 82 -46 -63 -224 157 -55 32 -182 130 -163 101 -182 70 -463 -83 -82 193 -363 50 -1293 160 -1293 -46 -124 -1293 112 -1293 206 -1293 -39 22 138 -50 -363 -363 76 63 27 -263 103 146 -205 -73 -282 203 -305 -1293 -1293 246 -1293 -463 -1293 -1293 163 -1293 -1293 -1293 165 -1293 246 -1293 -1293 -17 -1293 198 -1293 165 -1293 -1293 -1293 -117 42 -102 72 -463 126 -1293 79 -1293 246 -1293 -1293 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSDGRAGRTCMBSGGTTCGATYC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 23 nsites= 78 E= 5.7e-271 0.025641 0.320513 0.192308 0.461538 0.000000 0.666667 0.333333 0.000000 0.294872 0.153846 0.320513 0.230769 0.205128 0.038462 0.538462 0.217949 0.397436 0.051282 0.448718 0.102564 0.641026 0.051282 0.294872 0.012821 0.179487 0.102564 0.692308 0.025641 0.448718 0.000000 0.551282 0.000000 0.230769 0.076923 0.000000 0.692308 0.000000 0.756410 0.000000 0.243590 0.371795 0.474359 0.128205 0.025641 0.025641 0.307692 0.282051 0.384615 0.051282 0.371795 0.500000 0.076923 0.192308 0.025641 0.743590 0.038462 0.000000 0.000000 1.000000 0.000000 0.012821 0.000000 0.000000 0.987179 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.282051 0.000000 0.717949 0.000000 1.000000 0.000000 0.000000 0.000000 0.141026 0.243590 0.089744 0.525641 0.012821 0.435897 0.000000 0.551282 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSDGRAGRTCMBSGGTTCGATYC MEME-1 regular expression -------------------------------------------------------------------------------- [TC][CG][GAT][GTA][GA][AG]G[GA][TA][CT][CA][TCG][GC]GGTTC[GA]A[TC][TC]C -------------------------------------------------------------------------------- Time 288.25 secs. ******************************************************************************** ******************************************************************************** MOTIF GCSVRDTKGKTARSGCGYCNGACTNDWAA MEME-2 width = 29 sites = 63 llr = 1233 E-value = 2.4e-241 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCSVRDTKGKTARSGCGYCNGACTNDWAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::14531::::a61::1123:7::33389 pos.-specific C 3853:::1:11::3:a:452318:221:: probability G 72333425951:46a:911272::23:2: matrix T ::111374148::::::4231:2a325:1 bits 2.5 ** 2.2 ** 2.0 * ** 1.7 * * * *** * Relative 1.5 ** * * *** ** Entropy 1.2 ** * * *** * ** ** (28.2 bits) 1.0 ** * ** **** * ** ** 0.7 *** *********** **** ** 0.5 *** * *********** * **** ** 0.2 ******************* **** **** 0.0 ----------------------------- Multilevel GCCAAGTGGGTAAGGCGCCAGACTAGTAA consensus C GCGAGT T GC T TC T TAA sequence G T GT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSVRDTKGKTARSGCGYCNGACTNDWAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrIII:295293-295755 + 19 4.63e-15 AGCTTCTATG GCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrXV:113582-114045 + 48 4.63e-15 AGCTTCTATG GCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrII:266180-266676 + 9 4.63e-15 CTTCTATG GCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrVIII:115960-116396 - 14 4.63e-15 AGCTTCTATG GCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrXVI:689303-689883 + 31 6.92e-14 GGGCACTATG GCCGAGTGGTTAAGGCGACAGACTTGAAA TCTGTTGGGC chrV:288239-288733 - 51 6.92e-14 AGGCACTATG GCCGAGTGGTTAAGGCGACAGACTTGAAA TCTGTTGGGC chrII:226869-227373 + 13 2.15e-11 AGGCAACTTG GCCGAGTGGTTAAGGCGAAAGATTAGAAA TCTTTTGGGC chrVII:794188-794642 + 61 2.15e-11 CGGGCACATG GCGCAGTTGGTAGCGCGCTTCCCTTGCAA GGAAGAGGTC chrXV:853992-854441 - 56 2.15e-11 AGGGCACATG GCGCAGTTGGTAGCGCGCTTCCCTTGCAA GGAAGAGGTC chrIV:980832-981259 - 23 2.15e-11 AGGCAACTTG GCCGAGTGGTTAAGGCGAAAGATTAGAAA TCTTTTGGGC chrX:523799-523899 - 57 2.15e-11 AGGCAACTTG GCCGAGTGGTTAAGGCGAAAGATTAGAAA TCTTTTGGGC chrV:311867-312284 - 33 2.15e-11 TGGGCACATG GCGCAGTTGGTAGCGCGCTTCCCTTGCAA GGAAGAGGTC chrXIII:258995-259483 - 13 2.15e-11 TGGCAACTTG GCCGAGTGGTTAAGGCGAAAGATTAGAAA TCTTTTGGGC chrVIII:132861-133360 - 10 2.15e-11 TGGCAACTTG GCCGAGTGGTTAAGGCGAAAGATTAGAAA TCTTTTGGG chrI:166032-166558 + 31 2.15e-11 TGGGCACATG GCGCAGTTGGTAGCGCGCTTCCCTTGCAA GGAAGAGGTC chrIV:1201497-1202015 + 53 3.24e-11 AGCCTTGTTG GCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrIII:227736-228224 + 21 3.24e-11 TGGCACTATG GCCGAGTGGTTAAGGCGAGAGACTCGAAT GGAATAAAAA chrV:435595-436032 - 24 3.24e-11 AGCCTTGTTG GCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrVII:185501-185960 - 69 3.24e-11 TTG GCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrIV:1352318-1352750 - 17 3.24e-11 AGCCTTGTTG GCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrV:135167-135712 - 71 3.24e-11 G GCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrXI:46546-46993 - 51 1.30e-10 CAGCCCTTTT GGCCAAGTGGTAAGGCATCGCACTCGTAA TGCGGGGATC chrVI:137280-137754 - 54 2.91e-10 GACTCCATGG CCAAGTTGGTTAAGGCGTGCGACTGTTAA TCGCAAGATC chrXI:74403-74881 + 42 2.91e-10 GACTCCATGG CCAAGTTGGTTAAGGCGTGCGACTGTTAA TCGCAAGATC chrIII:127543-127907 + 51 2.91e-10 GACTCCATGG CCAAGTTGGTTAAGGCGTGCGACTGTTAA TCGCAAGATC chrXV:228110-228563 + 55 2.91e-10 GACTCCATGG CCAAGTTGGTTAAGGCGTGCGACTGTTAA TCGCAAGATC chrVII:730937-731426 + 16 2.91e-10 GACTCCATGG CCAAGTTGGTTAAGGCGTGCGACTGTTAA TCGCAAGATC chrXII:975835-976256 - 23 2.91e-10 GACTCCATGG CCAAGTTGGTTAAGGCGTGCGACTGTTAA TCGCAAGATC chrII:36221-36592 + 51 4.04e-10 AGCGGATTTA GCTCAGTTGGGAGAGCGCCAGACTGAAGA AAAACTTCGG chrXVI:559979-560519 - 53 4.04e-10 AGCGGATTTA GCTCAGTTGGGAGAGCGCCAGACTGAAGA AAAAACTTCG chrXVI:622344-622839 - 53 4.04e-10 TGCGGATTTA GCTCAGTTGGGAGAGCGCCAGACTGAAGA AAAAACTTCG chrVI:157730-158204 - 53 4.04e-10 AGCGGATTTA GCTCAGTTGGGAGAGCGCCAGACTGAAGA AAAAACTTCG chrVII:115287-115745 + 31 5.55e-10 ATCCTTGTTA GCTCAGTTGGTAGAGCGTTCGGCTTTTAA GCGCATTTGC chrXV:438395-438957 + 26 5.55e-10 ATCCTTGTTA GCTCAGTTGGTAGAGCGTTCGGCTTTTAA GCGCATTTGC chrVI:191323-191854 - 38 5.55e-10 TGTCCCAGTG GCCGAGTGGTTAAGGCGATGCCCTGCTAT TTCCTCAGAA chrXIV:569720-570091 - 47 8.35e-10 GGTCTCTTGG CCCAGTTGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrXII:1051859-1052339 - 57 8.35e-10 GGTCTCTTGG CCCAGTTGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrXVI:880065-880553 - 72 8.35e-10 . CCCAGTTGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrIX:183259-183704 - 44 8.35e-10 GGTCTCTTGG CCCAGTTGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrIX:210470-210954 + 13 8.35e-10 GGTCTCTTGG CCCAGTTGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrIV:667780-668262 - 71 8.35e-10 G CCCAGTTGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrXI:490758-491165 + 66 1.12e-09 GTTCCTCGTG GCCCAATGGTCACGGCGTCTGGCTACGAA CCAGAA chrV:492147-492609 - 59 1.12e-09 ATTCCTCGTG GCCCAATGGTCACGGCGTCTGGCTACGAA CCAGAAGATT chrXI:162268-162764 - 56 2.37e-09 TAGCTCGCGT GGCGTAATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrII:405677-406184 + 6 2.37e-09 CGCGT GGCGTAATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrVII:828518-828993 - 53 2.37e-09 TAGCTCGCGT GGCGTAATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrXIII:747732-748165 - 29 2.37e-09 TAGCTCGCGT GGCGTAATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrX:538351-538451 + 49 3.09e-09 TGGTTCCGTT GGCGTAATGGTAACGCGTCTCCCTCCTAA GGAGAAGACT chrXIV:725972-726408 - 39 3.67e-09 GGAGGGTTGG CCGAGTGGTCTAAGGCGGCAGACTTAAGA TCTGTTGGAC chrIV:519548-519983 + 38 3.67e-09 GGAGGGTTGG CCGAGTGGTCTAAGGCGGCAGACTTAAGA TCTGTTGGAC chrII:9353-9829 + 52 3.67e-09 GGAGGGTTGG CCGAGTGGTCTAAGGCGGCAGACTTAAGA TCTGTTGGAC chrVII:857241-857676 - 45 1.13e-08 GGTTGTTTGG CCGAGCGGTCTAAGGCGCCTGATTCAAGA AATATCTTGA chrIV:1461571-1462074 - 19 1.13e-08 GGTTGTTTGG CCGAGCGGTCTAAGGCGCCTGATTCAAGA AAAAATCTTG chrXII:628180-628669 + 19 1.13e-08 GGTTGTTTGG CCGAGCGGTCTAAGGCGCCTGATTCAAGA AAATATCTTG chrVII:774143-774588 + 43 1.30e-08 TGGGCGTGTG GCGTAGTCGGTAGCGCGCTCCCTTAGCAT GGGAGAGGTC chrXVI:856709-857110 + 52 1.30e-08 CGGGCGTGTG GCGTAGTCGGTAGCGCGCTCCCTTAGCAT GGGAGAGGTC chrXI:219700-220127 + 41 1.30e-08 AGGGCGTGTG GCGTAGTCGGTAGCGCGCTCCCTTAGCAT GGGAGAGGTC chrXVI:775629-776024 - 24 1.51e-08 AAGCTCGTAT GGCGCAGTGGTAGCGCAGCAGATTGCAAA TCTGTTGGTC chrVII:706921-707368 - 49 1.51e-08 AAGCTCGTAT GGCGCAGTGGTAGCGCAGCAGATTGCAAA TCTGTTGGTC chrV:99900-100401 + 41 2.00e-08 TAAGCGCCGT GGCGCAGTGGAAGCGCGCAGGGCTCATAA CCCTGATGTC chrXII:731885-732300 + 58 5.23e-08 GGGAGTTTGG CCGAGTGGTTTAAGGCGTCAGATTTAGGT GGATTTAACC chrVIII:466771-467227 + 49 8.73e-08 TAGCCTCCTT AGCTTAGTGGTAGAGCGTTGCACTTGTAA TGCAAAGGTC chrXVI:744094-744557 + 17 8.73e-08 AAGCCTCCTT AGCTTAGTGGTAGAGCGTTGCACTTGTAA TGCAAAGGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSVRDTKGKTARSGCGYCNGACTNDWAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:295293-295755 4.6e-15 18_[+2]_53 chrXV:113582-114045 4.6e-15 47_[+2]_24 chrII:266180-266676 4.6e-15 8_[+2]_63 chrVIII:115960-116396 4.6e-15 13_[-2]_58 chrXVI:689303-689883 6.9e-14 30_[+2]_41 chrV:288239-288733 6.9e-14 50_[-2]_21 chrII:226869-227373 2.2e-11 12_[+2]_59 chrVII:794188-794642 2.2e-11 60_[+2]_11 chrXV:853992-854441 2.2e-11 55_[-2]_16 chrIV:980832-981259 2.2e-11 22_[-2]_49 chrX:523799-523899 2.2e-11 56_[-2]_15 chrV:311867-312284 2.2e-11 32_[-2]_39 chrXIII:258995-259483 2.2e-11 12_[-2]_59 chrVIII:132861-133360 2.2e-11 9_[-2]_62 chrI:166032-166558 2.2e-11 30_[+2]_41 chrIV:1201497-1202015 3.2e-11 52_[+2]_19 chrIII:227736-228224 3.2e-11 20_[+2]_51 chrV:435595-436032 3.2e-11 23_[-2]_48 chrVII:185501-185960 3.2e-11 68_[-2]_3 chrIV:1352318-1352750 3.2e-11 16_[-2]_55 chrV:135167-135712 3.2e-11 70_[-2]_1 chrXI:46546-46993 1.3e-10 50_[-2]_21 chrVI:137280-137754 2.9e-10 53_[-2]_18 chrXI:74403-74881 2.9e-10 41_[+2]_30 chrIII:127543-127907 2.9e-10 50_[+2]_21 chrXV:228110-228563 2.9e-10 54_[+2]_17 chrVII:730937-731426 2.9e-10 15_[+2]_56 chrXII:975835-976256 2.9e-10 22_[-2]_49 chrII:36221-36592 4e-10 50_[+2]_21 chrXVI:559979-560519 4e-10 52_[-2]_19 chrXVI:622344-622839 4e-10 52_[-2]_19 chrVI:157730-158204 4e-10 52_[-2]_19 chrVII:115287-115745 5.6e-10 30_[+2]_41 chrXV:438395-438957 5.6e-10 25_[+2]_46 chrVI:191323-191854 5.6e-10 37_[-2]_34 chrXIV:569720-570091 8.4e-10 46_[-2]_25 chrXII:1051859-1052339 8.4e-10 56_[-2]_15 chrXVI:880065-880553 8.4e-10 71_[-2] chrIX:183259-183704 8.4e-10 43_[-2]_28 chrIX:210470-210954 8.4e-10 12_[+2]_59 chrIV:667780-668262 8.4e-10 70_[-2]_1 chrXI:490758-491165 1.1e-09 65_[+2]_6 chrV:492147-492609 1.1e-09 58_[-2]_13 chrXI:162268-162764 2.4e-09 55_[-2]_16 chrII:405677-406184 2.4e-09 5_[+2]_66 chrVII:828518-828993 2.4e-09 52_[-2]_19 chrXIII:747732-748165 2.4e-09 28_[-2]_43 chrX:538351-538451 3.1e-09 48_[+2]_23 chrXIV:725972-726408 3.7e-09 38_[-2]_33 chrIV:519548-519983 3.7e-09 37_[+2]_34 chrII:9353-9829 3.7e-09 51_[+2]_20 chrVII:857241-857676 1.1e-08 44_[-2]_27 chrIV:1461571-1462074 1.1e-08 18_[-2]_53 chrXII:628180-628669 1.1e-08 18_[+2]_53 chrVII:774143-774588 1.3e-08 42_[+2]_29 chrXVI:856709-857110 1.3e-08 51_[+2]_20 chrXI:219700-220127 1.3e-08 40_[+2]_31 chrXVI:775629-776024 1.5e-08 23_[-2]_48 chrVII:706921-707368 1.5e-08 48_[-2]_23 chrV:99900-100401 2e-08 40_[+2]_31 chrXII:731885-732300 5.2e-08 57_[+2]_14 chrVIII:466771-467227 8.7e-08 48_[+2]_23 chrXVI:744094-744557 8.7e-08 16_[+2]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSVRDTKGKTARSGCGYCNGACTNDWAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCSVRDTKGKTARSGCGYCNGACTNDWAA width=29 seqs=63 chrIII:295293-295755 ( 19) GCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrXV:113582-114045 ( 48) GCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrII:266180-266676 ( 9) GCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrVIII:115960-116396 ( 14) GCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrXVI:689303-689883 ( 31) GCCGAGTGGTTAAGGCGACAGACTTGAAA 1 chrV:288239-288733 ( 51) GCCGAGTGGTTAAGGCGACAGACTTGAAA 1 chrII:226869-227373 ( 13) GCCGAGTGGTTAAGGCGAAAGATTAGAAA 1 chrVII:794188-794642 ( 61) GCGCAGTTGGTAGCGCGCTTCCCTTGCAA 1 chrXV:853992-854441 ( 56) GCGCAGTTGGTAGCGCGCTTCCCTTGCAA 1 chrIV:980832-981259 ( 23) GCCGAGTGGTTAAGGCGAAAGATTAGAAA 1 chrX:523799-523899 ( 57) GCCGAGTGGTTAAGGCGAAAGATTAGAAA 1 chrV:311867-312284 ( 33) GCGCAGTTGGTAGCGCGCTTCCCTTGCAA 1 chrXIII:258995-259483 ( 13) GCCGAGTGGTTAAGGCGAAAGATTAGAAA 1 chrVIII:132861-133360 ( 10) GCCGAGTGGTTAAGGCGAAAGATTAGAAA 1 chrI:166032-166558 ( 31) GCGCAGTTGGTAGCGCGCTTCCCTTGCAA 1 chrIV:1201497-1202015 ( 53) GCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrIII:227736-228224 ( 21) GCCGAGTGGTTAAGGCGAGAGACTCGAAT 1 chrV:435595-436032 ( 24) GCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrVII:185501-185960 ( 69) GCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrIV:1352318-1352750 ( 17) GCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrV:135167-135712 ( 71) GCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrXI:46546-46993 ( 51) GGCCAAGTGGTAAGGCATCGCACTCGTAA 1 chrVI:137280-137754 ( 54) CCAAGTTGGTTAAGGCGTGCGACTGTTAA 1 chrXI:74403-74881 ( 42) CCAAGTTGGTTAAGGCGTGCGACTGTTAA 1 chrIII:127543-127907 ( 51) CCAAGTTGGTTAAGGCGTGCGACTGTTAA 1 chrXV:228110-228563 ( 55) CCAAGTTGGTTAAGGCGTGCGACTGTTAA 1 chrVII:730937-731426 ( 16) CCAAGTTGGTTAAGGCGTGCGACTGTTAA 1 chrXII:975835-976256 ( 23) CCAAGTTGGTTAAGGCGTGCGACTGTTAA 1 chrII:36221-36592 ( 51) GCTCAGTTGGGAGAGCGCCAGACTGAAGA 1 chrXVI:559979-560519 ( 53) GCTCAGTTGGGAGAGCGCCAGACTGAAGA 1 chrXVI:622344-622839 ( 53) GCTCAGTTGGGAGAGCGCCAGACTGAAGA 1 chrVI:157730-158204 ( 53) GCTCAGTTGGGAGAGCGCCAGACTGAAGA 1 chrVII:115287-115745 ( 31) GCTCAGTTGGTAGAGCGTTCGGCTTTTAA 1 chrXV:438395-438957 ( 26) GCTCAGTTGGTAGAGCGTTCGGCTTTTAA 1 chrVI:191323-191854 ( 38) GCCGAGTGGTTAAGGCGATGCCCTGCTAT 1 chrXIV:569720-570091 ( 47) CCCAGTTGGTTAAGGCACCGTGCTAATAA 1 chrXII:1051859-1052339 ( 57) CCCAGTTGGTTAAGGCACCGTGCTAATAA 1 chrXVI:880065-880553 ( 72) CCCAGTTGGTTAAGGCACCGTGCTAATAA 1 chrIX:183259-183704 ( 44) CCCAGTTGGTTAAGGCACCGTGCTAATAA 1 chrIX:210470-210954 ( 13) CCCAGTTGGTTAAGGCACCGTGCTAATAA 1 chrIV:667780-668262 ( 71) CCCAGTTGGTTAAGGCACCGTGCTAATAA 1 chrXI:490758-491165 ( 66) GCCCAATGGTCACGGCGTCTGGCTACGAA 1 chrV:492147-492609 ( 59) GCCCAATGGTCACGGCGTCTGGCTACGAA 1 chrXI:162268-162764 ( 56) GGCGTAATGGCAACGCGTCTGACTTCTAA 1 chrII:405677-406184 ( 6) GGCGTAATGGCAACGCGTCTGACTTCTAA 1 chrVII:828518-828993 ( 53) GGCGTAATGGCAACGCGTCTGACTTCTAA 1 chrXIII:747732-748165 ( 29) GGCGTAATGGCAACGCGTCTGACTTCTAA 1 chrX:538351-538451 ( 49) GGCGTAATGGTAACGCGTCTCCCTCCTAA 1 chrXIV:725972-726408 ( 39) CCGAGTGGTCTAAGGCGGCAGACTTAAGA 1 chrIV:519548-519983 ( 38) CCGAGTGGTCTAAGGCGGCAGACTTAAGA 1 chrII:9353-9829 ( 52) CCGAGTGGTCTAAGGCGGCAGACTTAAGA 1 chrVII:857241-857676 ( 45) CCGAGCGGTCTAAGGCGCCTGATTCAAGA 1 chrIV:1461571-1462074 ( 19) CCGAGCGGTCTAAGGCGCCTGATTCAAGA 1 chrXII:628180-628669 ( 19) CCGAGCGGTCTAAGGCGCCTGATTCAAGA 1 chrVII:774143-774588 ( 43) GCGTAGTCGGTAGCGCGCTCCCTTAGCAT 1 chrXVI:856709-857110 ( 52) GCGTAGTCGGTAGCGCGCTCCCTTAGCAT 1 chrXI:219700-220127 ( 41) GCGTAGTCGGTAGCGCGCTCCCTTAGCAT 1 chrXVI:775629-776024 ( 24) GGCGCAGTGGTAGCGCAGCAGATTGCAAA 1 chrVII:706921-707368 ( 49) GGCGCAGTGGTAGCGCAGCAGATTGCAAA 1 chrV:99900-100401 ( 41) GGCGCAGTGGAAGCGCGCAGGGCTCATAA 1 chrXII:731885-732300 ( 58) CCGAGTGGTTTAAGGCGTCAGATTTAGGT 1 chrVIII:466771-467227 ( 49) AGCTTAGTGGTAGAGCGTTGCACTTGTAA 1 chrXVI:744094-744557 ( 17) AGCTTAGTGGTAGAGCGTTGCACTTGTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSVRDTKGKTARSGCGYCNGACTNDWAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 39240 bayes= 9.26221 E= 2.4e-241 -332 73 188 -1262 -1262 218 -6 -1262 -174 148 73 -174 20 65 57 -200 76 -193 73 -152 -16 -193 118 -33 -200 -1262 18 117 -1262 -52 139 32 -1262 -1262 229 -152 -1262 -93 153 26 -432 -93 -152 137 165 -1262 -1262 -1262 92 -252 101 -1262 -133 80 161 -1262 -1262 -1262 246 -1262 -1262 246 -1262 -1262 -116 -1262 224 -1262 -116 113 -119 26 -87 153 -71 -74 13 -6 -6 -8 -1262 48 184 -174 110 -35 -6 -1262 -1262 210 -1262 -52 -1262 -1262 -1262 165 0 7 18 -16 -16 -19 94 -63 0 -71 -193 72 137 -1262 -6 -1262 151 -1262 -1262 -174 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSVRDTKGKTARSGCGYCNGACTNDWAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 63 E= 2.4e-241 0.031746 0.301587 0.666667 0.000000 0.000000 0.825397 0.174603 0.000000 0.095238 0.507937 0.301587 0.095238 0.365079 0.285714 0.269841 0.079365 0.539683 0.047619 0.301587 0.111111 0.285714 0.047619 0.412698 0.253968 0.079365 0.000000 0.206349 0.714286 0.000000 0.126984 0.476190 0.396825 0.000000 0.000000 0.888889 0.111111 0.000000 0.095238 0.523810 0.380952 0.015873 0.095238 0.063492 0.825397 1.000000 0.000000 0.000000 0.000000 0.603175 0.031746 0.365079 0.000000 0.126984 0.317460 0.555556 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.000000 0.857143 0.000000 0.142857 0.396825 0.079365 0.380952 0.174603 0.523810 0.111111 0.190476 0.349206 0.174603 0.174603 0.301587 0.000000 0.253968 0.650794 0.095238 0.682540 0.142857 0.174603 0.000000 0.000000 0.777778 0.000000 0.222222 0.000000 0.000000 0.000000 1.000000 0.317460 0.190476 0.206349 0.285714 0.285714 0.158730 0.349206 0.206349 0.317460 0.111111 0.047619 0.523810 0.825397 0.000000 0.174603 0.000000 0.904762 0.000000 0.000000 0.095238 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSVRDTKGKTARSGCGYCNGACTNDWAA MEME-2 regular expression -------------------------------------------------------------------------------- [GC]C[CG][ACG][AG][GAT][TG][GT]G[GT]TA[AG][GC]GCG[CT]C[AT][GC]A[CT]T[ATG][GAT][TA]AA -------------------------------------------------------------------------------- Time 547.25 secs. ******************************************************************************** ******************************************************************************** MOTIF YHACAYCCRTACAYY MEME-3 width = 15 sites = 86 llr = 1019 E-value = 3.6e-107 ******************************************************************************** -------------------------------------------------------------------------------- Motif YHACAYCCRTACAYY MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2371a:::6:8:8:2 pos.-specific C 3319:7a9:3:a235 probability G ::1:::::4:2:::: matrix T 54:::3:1:6:::63 bits 2.5 * 2.2 * * 2.0 * * * 1.7 * ** * Relative 1.5 ** ** * Entropy 1.2 ***** *** (17.1 bits) 1.0 ***** *** 0.7 ******* **** 0.5 ************* 0.2 *************** 0.0 --------------- Multilevel TTACACCCATACATC consensus CA T GC CT sequence AC A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YHACAYCCRTACAYY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chrIV:221972-222320 - 39 3.56e-10 ACGACGGTTA CCACACCCGTACACC CTTATCTCAT chrXII:1064868-1065352 - 33 6.40e-09 ACCACACCCA CCACACCCACACACC ACACACACAC chrIV:50-319 + 1 6.40e-09 . CCACACCCACACACC ACACACTACC chrVIII:562250-562629 - 77 6.40e-09 CACACACAC CCACACCCACACACC ACACCCACAC chrXII:11045-11528 + 31 6.40e-09 CCCACACACA CCACACCCACACACC ACACCCACAC chrVI:4436-4978 + 46 6.40e-09 CCCACACACA CCACACCCACACACC CACACCCACA chrXI:666441-666814 - 35 6.40e-09 CACACCCACA CCACACCCACACACC CACAACCCTA chrXIV:6487-6865 + 12 6.40e-09 CACCCACACA CCACACCCACACACC CACACCACAC chrIII:33-545 + 44 6.40e-09 CACACCCACA CCACACCCACACACC ACACCCACAC chrXIII:5293-5816 + 69 6.40e-09 CACCCACACA CCACACCCACACACC CTAACACAAT chrVIII:382937-383359 - 3 3.58e-08 CGAACATCCG ATACACCCATACATC AT chrXIV:783856-784183 - 68 4.88e-08 CCCACACACA CCACACCCACACACT ACCCTAACAC chrIV:538945-539220 + 71 8.10e-08 ACATGAATTA TCACACCCACACCCC TCATTCAATC chrII:89667-89928 - 54 1.00e-07 TTTTGTGACT TTACATCCATACACC CTCTTTAACA chrVIII:556660-557214 - 3 1.16e-07 CACACCACAC CCACACCCACACACA CC chrIV:1525317-1525658 - 6 1.16e-07 ACACACCACA CCACACCCACACACA CCACA chrXII:650960-651284 + 66 1.36e-07 ACAATTATCT CAACACCCACACATT TCTCATGGTA chrIX:254259-254540 - 9 2.75e-07 CGGCGAGCTT CCGCACCCACACATT CTAATTGC chrII:415511-415869 - 43 2.75e-07 ATTTCCTTTT TTACACCCATGCATT TTGTCATCCA chrIX:68194-68514 + 44 3.22e-07 TTTGAGTTTA TTACATCCGTACATT ACTAAGATGT chrXIII:225358-225721 + 54 3.22e-07 CATCCGTGCA TTACATCCGTACATT CTATTTTTTA chrXIII:732030-732407 + 36 3.22e-07 TCAAGACATA ATACATCCGCACATC GCGCATGTGT chrXIII:224078-224384 - 9 3.74e-07 CTACTGAATT TTACATCCATACATT TTTTTGAA chrXI:108712-109070 + 78 4.22e-07 AAACACATTA CAACATCCGTACATT TAGTTGGC chrX:607882-607982 + 28 4.22e-07 TATGCCAACC CTCCATCCATACATC CTTTTTAACC chrII:592918-593274 - 39 4.22e-07 ACCTCTTTTC TTGCATCCATACATC TTTGAACTCC chrXV:94492-94836 + 19 4.79e-07 AAAATAGAAT TAACACCCATGCATT ATTGTCTTCG chrIV:411260-411623 + 42 4.79e-07 GAAACAAATC AAACACCCACACCCC GGGCACCCAA chrXV:79767-80107 - 61 5.35e-07 AACTCCATGT AAACACCCGTACATA TTAAATAAGT chrXII:818802-819173 + 60 6.71e-07 CATACCTTTC CAACATCCGTACATA TTGATTATTG chrII:605730-606103 + 48 6.71e-07 TCTGACAGTT TTACACCTGTACATC TTCACCATCA chrX:391867-391967 + 61 6.71e-07 CGCACACGCC CCACACCCAGACCTC CCTGCGAGCG chrVII:726430-726765 + 55 6.71e-07 CATACCCTAT ATACACCCATACCCT ATTTTTAAAT chrXIII:145837-146270 + 79 8.36e-07 CAGCATTTTT GTACATCCATACACC ATACACC chrIV:1401256-1401587 + 60 8.36e-07 CCCAATCATT TTCCACCCACACATA TATTACCCTT chrV:85139-85453 + 52 9.29e-07 CAGTGATATC ATCCACCCATACCCC TCGATGTATT chrXII:922130-922536 + 60 9.29e-07 CGTTTGAAAT TGACACCCGTACATA TTCCAATTCT chrX:75286-75386 - 66 1.03e-06 TAATTCCTCT ATACATCCACACCTC ACTATTTGAA chrX:703277-703377 - 24 1.13e-06 AGACGCGTGG AAGCACCCATGCATC CACTATTTAT chrXV:678835-679175 - 55 1.13e-06 TTTTGGGACC ATACATCCGTACATA TTGTGGACCC chrV:53543-53941 + 25 1.25e-06 TCTCTTTGTT TGACACCCACACATA TTTGGTGTTC chrVII:254115-254538 - 71 1.25e-06 ATATTTGAGG TTGCACCCGTGCATA TTGAAAGATG chrIV:341280-341618 - 44 1.25e-06 GAGTCTACTT TTCCATCCGTACATT TTAACACCCA chrIV:130597-130963 - 19 1.37e-06 TGACATATAC AAACATCCGCACATT TTATAGCTTT chrXVI:406185-406547 + 53 1.37e-06 TTATGAAGTT TAACATCCGTACCTT TCCACCTCCA chrXVI:731933-732304 + 34 1.64e-06 CGCATCGTCA GTACACCCATACCTT TAGGATGGTT chrXIII:551376-551787 + 86 1.80e-06 CAGTACATAT TGGCACCCATACATT chrIV:835784-836209 + 3 1.80e-06 GC GCACACCCACGCCCC GCAACCGCAC chrXII:897700-898025 + 47 1.99e-06 CAGAATTCTA CAACACCTGTACCTC CAAAAAACCC chrXV:505094-505484 + 78 1.99e-06 ATGAACCTTA TCACACCCAAACATA TGATATGG chrVIII:505830-506191 - 41 2.18e-06 CGAGACAATT ATGCATCCATACATT TCACCCAGAC chrXI:313256-313671 + 81 2.39e-06 AAGTTTTTGG TTACATCTGCACATC TGGTT chrXII:796439-796867 - 31 2.39e-06 CTTCTATCTT TTGCATCCGTGCCTC CTGGATAATA chrXIV:495217-495576 - 32 2.63e-06 CGTACACTAT ACACACCCAAACCTC CTTTAAAAAT chrV:140472-140865 - 57 2.63e-06 TGGACGCACA AAGCACCCATACCTT TTACAATGCC chrIV:1300943-1301332 + 20 2.63e-06 ATTTTCCTTC AAACATCCGTGCACT GTGGATGTTT chrVII:310450-310939 + 40 2.86e-06 GTAACCAATG TAACATCTGTACACC AGGGACCCAC chrV:423113-423478 + 25 2.86e-06 TGCTGCATAT TTACCTCCGTACACC TTCTACACCC chrXI:618832-619202 - 44 2.86e-06 TAAATACTAT TTCCATCCGTGCCTC TAATAGATTT chrVIII:148952-149291 - 11 3.12e-06 GCCCATACAT TTTCACCCATGCACC ATTGGATTAT chrXV:167967-168429 - 40 3.12e-06 GGGCGGCTTT AAACACCCGTGCCTA TATTTAAGTT chrXVI:188629-188940 + 54 3.37e-06 ACGTGACTTT TAAAACCCATGCATC GGTTACTATG chrIV:1450886-1451323 - 29 3.37e-06 ATTTAGACAT TAACACCTGTACATA TTTGTATTTT chrXV:866573-866919 - 60 3.67e-06 AAAACCGGTG TAACACCCATACAAA CCCAGAATGC chrXIV:63125-63591 - 10 3.67e-06 CAATACTACT TTACATCCGAACATT TTAGCAACC chrII:332291-332718 + 69 3.67e-06 TATTTCCTTG CTGCACCCATACAAT TCTAAACCCA chrVII:534815-535249 - 22 4.35e-06 TATTTTATAT ATGCATCCGTGCATT TGTGTAACCC chrXII:1028206-1028556 + 65 4.35e-06 AAAGACAAAA TATCACCCATGCACC AAAATGTATG chrVII:648957-649418 - 12 5.16e-06 AGGACATTTT AAACATCCGTACAAC GAGAACCCAT chrIV:217103-217595 + 13 5.16e-06 AGGCCCTGCT TTGAACCCGTACATT TTATTCTATA chrXIII:124347-124713 - 33 5.64e-06 AAGACTGCTA TTAAATCCGTACATT ATTAAAATGT chrX:651215-651315 + 56 6.13e-06 TTTTATACAA CAACACCCATATACC CATAATTATT chrXVI:520190-520515 + 60 6.13e-06 TGCCTGAGTG TTCCACCCAGGCCTC GCCGGAGGAA chrIX:257373-257751 + 19 6.65e-06 CGGTATGTGA CGACATCTGTACACC GCAAAGTTGT chrII:604136-604485 + 39 7.19e-06 CCGTACATTT ACACATCTGTACATT TTTCATATTC chrV:23531-23906 + 27 7.19e-06 GAAACGCATA CCCCACCCCCACATT TCTCATTTAA chrIX:99656-100016 - 24 7.19e-06 GTACACCATG TAACACCAGTACATT TATTCATGAA chrIV:117153-117566 + 59 7.77e-06 TGTATTAATC TCAGACCCATACATA TCTACACCCA chrIV:308026-308377 + 71 9.05e-06 ACATTTCCTG TTACATCCTTACATA TATGCAGGCA chrXI:158216-158599 + 41 1.62e-05 ATTCATTTAT TTCAACCCGTGCACA CTGGAAATAA chrIV:579052-579383 + 37 1.74e-05 ATAAGCCTTT TACCACCCATAAACC ATAAAGTAGA chrX:90084-90184 + 40 1.74e-05 CCTTTTCAAT TTGCACCTGGACATT CTCACCCATA chrII:167908-168187 + 36 1.99e-05 GACAGTGTTT TAAAACCCAGACATA TTTTTCACCA chrVIII:296903-297229 + 39 2.13e-05 TCACAATTTC GTCCACCAGTACATC ACAGCATGCT chrV:354681-355313 - 82 2.75e-05 GCTC CTAACCCCATACATA CACTGTATGA chrVII:609455-609851 - 29 3.31e-05 TACTTAAACT TCACATCCTAACATT AGAGATGCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YHACAYCCRTACAYY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:221972-222320 3.6e-10 38_[-3]_47 chrXII:1064868-1065352 6.4e-09 32_[-3]_53 chrIV:50-319 6.4e-09 [+3]_85 chrVIII:562250-562629 6.4e-09 76_[-3]_9 chrXII:11045-11528 6.4e-09 30_[+3]_55 chrVI:4436-4978 6.4e-09 45_[+3]_40 chrXI:666441-666814 6.4e-09 34_[-3]_51 chrXIV:6487-6865 6.4e-09 11_[+3]_74 chrIII:33-545 6.4e-09 43_[+3]_42 chrXIII:5293-5816 6.4e-09 68_[+3]_17 chrVIII:382937-383359 3.6e-08 2_[-3]_83 chrXIV:783856-784183 4.9e-08 67_[-3]_18 chrIV:538945-539220 8.1e-08 70_[+3]_15 chrII:89667-89928 1e-07 53_[-3]_32 chrVIII:556660-557214 1.2e-07 2_[-3]_83 chrIV:1525317-1525658 1.2e-07 5_[-3]_80 chrXII:650960-651284 1.4e-07 65_[+3]_20 chrIX:254259-254540 2.8e-07 8_[-3]_77 chrII:415511-415869 2.8e-07 42_[-3]_43 chrIX:68194-68514 3.2e-07 43_[+3]_42 chrXIII:225358-225721 3.2e-07 53_[+3]_32 chrXIII:732030-732407 3.2e-07 35_[+3]_50 chrXIII:224078-224384 3.7e-07 8_[-3]_77 chrXI:108712-109070 4.2e-07 77_[+3]_8 chrX:607882-607982 4.2e-07 27_[+3]_58 chrII:592918-593274 4.2e-07 38_[-3]_47 chrXV:94492-94836 4.8e-07 18_[+3]_67 chrIV:411260-411623 4.8e-07 41_[+3]_44 chrXV:79767-80107 5.4e-07 60_[-3]_25 chrXII:818802-819173 6.7e-07 59_[+3]_26 chrII:605730-606103 6.7e-07 47_[+3]_38 chrX:391867-391967 6.7e-07 60_[+3]_25 chrVII:726430-726765 6.7e-07 54_[+3]_31 chrXIII:145837-146270 8.4e-07 78_[+3]_7 chrIV:1401256-1401587 8.4e-07 59_[+3]_26 chrV:85139-85453 9.3e-07 51_[+3]_34 chrXII:922130-922536 9.3e-07 59_[+3]_26 chrX:75286-75386 1e-06 65_[-3]_20 chrX:703277-703377 1.1e-06 23_[-3]_62 chrXV:678835-679175 1.1e-06 54_[-3]_31 chrV:53543-53941 1.2e-06 24_[+3]_61 chrVII:254115-254538 1.2e-06 70_[-3]_15 chrIV:341280-341618 1.2e-06 43_[-3]_42 chrIV:130597-130963 1.4e-06 18_[-3]_67 chrXVI:406185-406547 1.4e-06 52_[+3]_33 chrXVI:731933-732304 1.6e-06 33_[+3]_52 chrXIII:551376-551787 1.8e-06 85_[+3] chrIV:835784-836209 1.8e-06 2_[+3]_83 chrXII:897700-898025 2e-06 46_[+3]_39 chrXV:505094-505484 2e-06 77_[+3]_8 chrVIII:505830-506191 2.2e-06 40_[-3]_45 chrXI:313256-313671 2.4e-06 80_[+3]_5 chrXII:796439-796867 2.4e-06 30_[-3]_55 chrXIV:495217-495576 2.6e-06 31_[-3]_54 chrV:140472-140865 2.6e-06 56_[-3]_29 chrIV:1300943-1301332 2.6e-06 19_[+3]_66 chrVII:310450-310939 2.9e-06 39_[+3]_46 chrV:423113-423478 2.9e-06 24_[+3]_61 chrXI:618832-619202 2.9e-06 43_[-3]_42 chrVIII:148952-149291 3.1e-06 10_[-3]_75 chrXV:167967-168429 3.1e-06 39_[-3]_46 chrXVI:188629-188940 3.4e-06 53_[+3]_32 chrIV:1450886-1451323 3.4e-06 28_[-3]_57 chrXV:866573-866919 3.7e-06 59_[-3]_26 chrXIV:63125-63591 3.7e-06 9_[-3]_76 chrII:332291-332718 3.7e-06 68_[+3]_17 chrVII:534815-535249 4.3e-06 21_[-3]_64 chrXII:1028206-1028556 4.3e-06 64_[+3]_21 chrVII:648957-649418 5.2e-06 11_[-3]_74 chrIV:217103-217595 5.2e-06 12_[+3]_73 chrXIII:124347-124713 5.6e-06 32_[-3]_53 chrX:651215-651315 6.1e-06 55_[+3]_30 chrXVI:520190-520515 6.1e-06 59_[+3]_26 chrIX:257373-257751 6.7e-06 18_[+3]_67 chrII:604136-604485 7.2e-06 38_[+3]_47 chrV:23531-23906 7.2e-06 26_[+3]_59 chrIX:99656-100016 7.2e-06 23_[-3]_62 chrIV:117153-117566 7.8e-06 58_[+3]_27 chrIV:308026-308377 9.1e-06 70_[+3]_15 chrXI:158216-158599 1.6e-05 40_[+3]_45 chrIV:579052-579383 1.7e-05 36_[+3]_49 chrX:90084-90184 1.7e-05 39_[+3]_46 chrII:167908-168187 2e-05 35_[+3]_50 chrVIII:296903-297229 2.1e-05 38_[+3]_47 chrV:354681-355313 2.8e-05 81_[-3]_4 chrVII:609455-609851 3.3e-05 28_[-3]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YHACAYCCRTACAYY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YHACAYCCRTACAYY width=15 seqs=86 chrIV:221972-222320 ( 39) CCACACCCGTACACC 1 chrXII:1064868-1065352 ( 33) CCACACCCACACACC 1 chrIV:50-319 ( 1) CCACACCCACACACC 1 chrVIII:562250-562629 ( 77) CCACACCCACACACC 1 chrXII:11045-11528 ( 31) CCACACCCACACACC 1 chrVI:4436-4978 ( 46) CCACACCCACACACC 1 chrXI:666441-666814 ( 35) CCACACCCACACACC 1 chrXIV:6487-6865 ( 12) CCACACCCACACACC 1 chrIII:33-545 ( 44) CCACACCCACACACC 1 chrXIII:5293-5816 ( 69) CCACACCCACACACC 1 chrVIII:382937-383359 ( 3) ATACACCCATACATC 1 chrXIV:783856-784183 ( 68) CCACACCCACACACT 1 chrIV:538945-539220 ( 71) TCACACCCACACCCC 1 chrII:89667-89928 ( 54) TTACATCCATACACC 1 chrVIII:556660-557214 ( 3) CCACACCCACACACA 1 chrIV:1525317-1525658 ( 6) CCACACCCACACACA 1 chrXII:650960-651284 ( 66) CAACACCCACACATT 1 chrIX:254259-254540 ( 9) CCGCACCCACACATT 1 chrII:415511-415869 ( 43) TTACACCCATGCATT 1 chrIX:68194-68514 ( 44) TTACATCCGTACATT 1 chrXIII:225358-225721 ( 54) TTACATCCGTACATT 1 chrXIII:732030-732407 ( 36) ATACATCCGCACATC 1 chrXIII:224078-224384 ( 9) TTACATCCATACATT 1 chrXI:108712-109070 ( 78) CAACATCCGTACATT 1 chrX:607882-607982 ( 28) CTCCATCCATACATC 1 chrII:592918-593274 ( 39) TTGCATCCATACATC 1 chrXV:94492-94836 ( 19) TAACACCCATGCATT 1 chrIV:411260-411623 ( 42) AAACACCCACACCCC 1 chrXV:79767-80107 ( 61) AAACACCCGTACATA 1 chrXII:818802-819173 ( 60) CAACATCCGTACATA 1 chrII:605730-606103 ( 48) TTACACCTGTACATC 1 chrX:391867-391967 ( 61) CCACACCCAGACCTC 1 chrVII:726430-726765 ( 55) ATACACCCATACCCT 1 chrXIII:145837-146270 ( 79) GTACATCCATACACC 1 chrIV:1401256-1401587 ( 60) TTCCACCCACACATA 1 chrV:85139-85453 ( 52) ATCCACCCATACCCC 1 chrXII:922130-922536 ( 60) TGACACCCGTACATA 1 chrX:75286-75386 ( 66) ATACATCCACACCTC 1 chrX:703277-703377 ( 24) AAGCACCCATGCATC 1 chrXV:678835-679175 ( 55) ATACATCCGTACATA 1 chrV:53543-53941 ( 25) TGACACCCACACATA 1 chrVII:254115-254538 ( 71) TTGCACCCGTGCATA 1 chrIV:341280-341618 ( 44) TTCCATCCGTACATT 1 chrIV:130597-130963 ( 19) AAACATCCGCACATT 1 chrXVI:406185-406547 ( 53) TAACATCCGTACCTT 1 chrXVI:731933-732304 ( 34) GTACACCCATACCTT 1 chrXIII:551376-551787 ( 86) TGGCACCCATACATT 1 chrIV:835784-836209 ( 3) GCACACCCACGCCCC 1 chrXII:897700-898025 ( 47) CAACACCTGTACCTC 1 chrXV:505094-505484 ( 78) TCACACCCAAACATA 1 chrVIII:505830-506191 ( 41) ATGCATCCATACATT 1 chrXI:313256-313671 ( 81) TTACATCTGCACATC 1 chrXII:796439-796867 ( 31) TTGCATCCGTGCCTC 1 chrXIV:495217-495576 ( 32) ACACACCCAAACCTC 1 chrV:140472-140865 ( 57) AAGCACCCATACCTT 1 chrIV:1300943-1301332 ( 20) AAACATCCGTGCACT 1 chrVII:310450-310939 ( 40) TAACATCTGTACACC 1 chrV:423113-423478 ( 25) TTACCTCCGTACACC 1 chrXI:618832-619202 ( 44) TTCCATCCGTGCCTC 1 chrVIII:148952-149291 ( 11) TTTCACCCATGCACC 1 chrXV:167967-168429 ( 40) AAACACCCGTGCCTA 1 chrXVI:188629-188940 ( 54) TAAAACCCATGCATC 1 chrIV:1450886-1451323 ( 29) TAACACCTGTACATA 1 chrXV:866573-866919 ( 60) TAACACCCATACAAA 1 chrXIV:63125-63591 ( 10) TTACATCCGAACATT 1 chrII:332291-332718 ( 69) CTGCACCCATACAAT 1 chrVII:534815-535249 ( 22) ATGCATCCGTGCATT 1 chrXII:1028206-1028556 ( 65) TATCACCCATGCACC 1 chrVII:648957-649418 ( 12) AAACATCCGTACAAC 1 chrIV:217103-217595 ( 13) TTGAACCCGTACATT 1 chrXIII:124347-124713 ( 33) TTAAATCCGTACATT 1 chrX:651215-651315 ( 56) CAACACCCATATACC 1 chrXVI:520190-520515 ( 60) TTCCACCCAGGCCTC 1 chrIX:257373-257751 ( 19) CGACATCTGTACACC 1 chrII:604136-604485 ( 39) ACACATCTGTACATT 1 chrV:23531-23906 ( 27) CCCCACCCCCACATT 1 chrIX:99656-100016 ( 24) TAACACCAGTACATT 1 chrIV:117153-117566 ( 59) TCAGACCCATACATA 1 chrIV:308026-308377 ( 71) TTACATCCTTACATA 1 chrXI:158216-158599 ( 41) TTCAACCCGTGCACA 1 chrIV:579052-579383 ( 37) TACCACCCATAAACC 1 chrX:90084-90184 ( 40) TTGCACCTGGACATT 1 chrII:167908-168187 ( 36) TAAAACCCAGACATA 1 chrVIII:296903-297229 ( 39) GTCCACCAGTACATC 1 chrV:354681-355313 ( 82) CTAACCCCATACATA 1 chrVII:609455-609851 ( 29) TCACATCCTAACATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YHACAYCCRTACAYY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 46870 bayes= 10.6086 E= 3.6e-107 -60 68 -197 51 -25 56 -197 40 118 -64 -38 -377 -219 234 -396 -1307 162 -296 -1307 -1307 -1307 184 -1307 13 -1307 246 -1307 -1307 -377 228 -1307 -177 84 -396 112 -377 -277 62 -197 98 137 -1307 -6 -1307 -477 243 -1307 -477 135 3 -1307 -1307 -319 89 -1307 98 -60 136 -1307 3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YHACAYCCRTACAYY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 86 E= 3.6e-107 0.209302 0.290698 0.046512 0.453488 0.267442 0.267442 0.046512 0.418605 0.720930 0.116279 0.139535 0.023256 0.069767 0.918605 0.011628 0.000000 0.976744 0.023256 0.000000 0.000000 0.000000 0.651163 0.000000 0.348837 0.000000 1.000000 0.000000 0.000000 0.023256 0.883721 0.000000 0.093023 0.569767 0.011628 0.395349 0.023256 0.046512 0.279070 0.046512 0.627907 0.825581 0.000000 0.174419 0.000000 0.011628 0.976744 0.000000 0.011628 0.813953 0.186047 0.000000 0.000000 0.034884 0.337209 0.000000 0.627907 0.209302 0.465116 0.000000 0.325581 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YHACAYCCRTACAYY MEME-3 regular expression -------------------------------------------------------------------------------- [TCA][TAC]ACA[CT]CC[AG][TC]ACA[TC][CTA] -------------------------------------------------------------------------------- Time 805.40 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:505094-505484 1.16e-03 52_[+3(3.12e-06)]_10_[+3(1.99e-06)]_\ 8 chrI:31-214 3.40e-01 100 chrIV:720743-721187 6.65e-01 100 chrVII:328364-328967 1.06e-06 4_[+1(3.59e-10)]_73 chrV:362991-363137 9.35e-01 100 chrXII:796439-796867 5.69e-03 3_[-3(9.09e-05)]_12_[-3(2.39e-06)]_\ 55 chrVI:157730-158204 2.61e-13 10_[-1(1.77e-10)]_19_[-2(4.04e-10)]_\ 19 chrV:79544-79988 8.03e-01 100 chrIV:1237159-1237702 6.22e-01 100 chrIV:667780-668262 3.28e-13 47_[-1(2.99e-11)]_[-2(8.35e-10)]_1 chrIV:1450886-1451323 1.60e-02 28_[-3(3.37e-06)]_57 chrII:236833-237249 8.22e-01 100 chrXII:796949-797486 5.94e-08 47_[+1(3.59e-10)]_30 chrXIII:124347-124713 1.50e-02 12_[+3(9.78e-06)]_5_[-3(5.64e-06)]_\ 53 chrXII:951228-951672 8.73e-01 100 chrXIII:808080-808532 1.17e-05 1_[-1(1.80e-08)]_76 chrXV:867709-868153 3.20e-01 100 chrVII:440432-441364 5.20e-01 100 chrXV:620179-620748 3.02e-01 100 chrXVI:622344-622839 1.50e-14 10_[-1(1.77e-10)]_19_[-2(4.04e-10)]_\ 19 chrXII:930861-931098 5.88e-01 100 chrVIII:388742-389191 1.23e-01 100 chrVIII:382937-383359 2.23e-05 2_[-3(3.58e-08)]_2_[-3(6.65e-06)]_\ 66 chrVII:310913-312282 4.15e-01 100 chrIV:600538-600982 9.45e-01 100 chrXI:219700-220127 1.60e-10 40_[+2(1.30e-08)]_[+1(1.82e-09)]_8 chrVII:479214-483046 4.18e-01 100 chrVII:438971-439432 5.67e-01 100 chrII:9353-9829 5.34e-07 51_[+2(3.67e-09)]_20 chrXII:953118-953384 5.60e-01 100 chrXII:242482-242725 9.68e-01 100 chrIV:1075309-1075716 6.08e-06 21_[-1(6.95e-10)]_56 chrIII:292594-293014 3.65e-01 100 chrXVI:329068-329527 9.31e-01 100 chrVII:287208-287657 3.69e-03 36_[-2(6.09e-06)]_35 chrXV:300860-301459 9.72e-07 54_[+1(5.37e-10)]_23 chrVII:561394-561971 5.07e-01 100 chrXI:284280-284824 6.63e-01 100 chrXII:1028206-1028556 1.45e-02 64_[+3(4.35e-06)]_2_[-3(6.62e-05)]_\ 4 chrXII:441265-441595 8.05e-01 100 chrXIII:5293-5816 5.96e-06 36_[+3(6.40e-09)]_4_[+3(6.40e-09)]_\ 6_[+3(3.31e-05)]_9 chrI:71550-73593 2.05e-02 100 chrXVI:856709-857110 1.20e-05 51_[+2(1.30e-08)]_20 chrIV:538945-539220 5.29e-05 70_[+3(8.10e-08)]_15 chrXII:1029710-1030020 1.69e-02 100 chrIII:131877-132133 8.76e-01 100 chrXV:896438-896882 8.21e-02 100 chrXII:855933-856720 4.84e-01 100 chrXII:673654-674232 4.12e-01 100 chrVII:727668-728115 8.59e-01 100 chrXII:712287-712527 8.89e-01 100 chrVII:823273-823692 3.28e-01 100 chrIV:117889-118203 6.00e-01 100 chrVII:474209-474357 9.84e-01 100 chrIII:800-1348 1.47e-01 100 chrXVI:942238-942535 9.49e-01 100 chrIII:177140-177576 9.91e-01 100 chrXIII:747732-748165 3.90e-12 5_[-1(3.13e-10)]_[-2(2.37e-09)]_43 chrII:142106-142550 3.90e-01 100 chrVII:700483-701259 4.97e-01 100 chrXVI:646170-646318 4.47e-01 100 chrIV:1237930-1238418 7.08e-01 100 chrXIV:174302-174623 6.45e-01 100 chrXIII:183695-184139 4.35e-06 42_[-1(8.93e-10)]_35 chrV:135167-135712 9.98e-14 47_[-1(2.04e-09)]_[-2(3.24e-11)]_1 chrIX:324061-324558 1.50e-04 55_[-1(1.52e-07)]_22 chrXVI:654409-654620 3.64e-02 100 chrXV:670263-670707 9.03e-01 100 chrIV:835784-836209 8.74e-04 2_[+3(1.80e-06)]_83 chrII:167908-168187 8.76e-03 35_[+3(1.99e-05)]_2_[+3(4.73e-05)]_\ 33 chrII:235044-235390 4.91e-01 100 chrXIII:551376-551787 1.08e-02 11_[-3(4.46e-05)]_43_[+3(3.31e-05)]_\ 1_[+3(1.80e-06)] chrXII:210265-210469 9.33e-01 100 chrIX:99656-100016 2.11e-02 23_[-3(7.19e-06)]_62 chrIV:1401256-1401587 3.70e-03 59_[+3(8.36e-07)]_26 chrXV:444817-446163 2.24e-01 100 chrVII:706921-707368 6.59e-09 25_[-1(1.03e-07)]_[-2(1.51e-08)]_23 chrII:256651-256926 5.55e-01 100 chrXIV:631717-632117 1.12e-01 100 chrII:562870-563314 6.60e-01 100 chrXV:779708-780987 4.15e-01 100 chrIV:45931-46210 2.42e-01 100 chrXIV:88860-89849 8.96e-01 100 chrVII:799710-800154 8.18e-01 100 chrXII:922130-922536 1.77e-03 33_[+3(1.86e-05)]_11_[+3(9.29e-07)]_\ 26 chrXV:92941-93518 7.94e-01 100 chrVII:557375-557594 5.14e-01 100 chrXI:665648-666184 1.69e-01 100 chrVII:779402-779850 3.22e-07 76_[+1(4.83e-09)]_1 chrII:415511-415869 4.96e-04 26_[-3(7.38e-05)]_1_[-3(2.75e-07)]_\ 43 chrXII:638294-638975 8.78e-01 100 chrXII:975835-976256 3.14e-06 22_[-2(2.91e-10)]_49 chrXIII:463360-463907 7.92e-04 7_[+1(1.52e-07)]_70 chrIV:619721-620224 3.40e-05 58_[-1(2.74e-08)]_19 chrVII:1057505-1057949 9.14e-01 100 chrXI:617893-618337 4.63e-01 100 chrIV:1489082-1489642 9.36e-01 100 chrXII:962850-963315 8.87e-01 100 chrXV:779113-779338 7.57e-01 100 chrXII:263061-263606 5.28e-01 100 chrXV:905822-906046 6.22e-01 100 chrVI:83838-84377 3.38e-01 100 chrXI:618832-619202 2.60e-03 13_[+3(9.78e-06)]_15_[-3(2.86e-06)]_\ 42 chrXII:818422-818807 3.01e-01 100 chrIV:568671-569216 4.07e-07 25_[+1(3.13e-10)]_52 chrXVI:654260-654401 6.52e-01 100 chrII:608618-609062 3.15e-01 100 chrIV:218391-218682 5.90e-03 42_[-2(2.24e-05)]_29 chrIV:1256870-1257283 5.43e-01 100 chrI:166032-166558 2.48e-14 30_[+2(2.15e-11)]_[+1(2.36e-10)]_18 chrXI:140773-141342 5.94e-08 22_[-1(3.59e-10)]_55 chrVII:726430-726765 3.07e-03 37_[+3(1.64e-06)]_2_[+3(6.71e-07)]_\ 31 chrXV:416272-416716 7.18e-01 100 chrXI:218392-218641 9.30e-01 100 chrII:592918-593274 1.74e-03 21_[-3(6.99e-05)]_2_[-3(4.22e-07)]_\ 47 chrX:536000-536100 2.00e-01 100 chrXIV:96047-96503 6.36e-07 27_[-1(4.83e-09)]_50 chrXII:837678-839146 6.96e-02 66_[-1(7.11e-05)]_11 chrXI:322405-322721 2.69e-01 100 chrXII:628180-628669 7.66e-05 18_[+2(1.13e-08)]_53 chrXVI:581873-582427 3.44e-02 100 chrV:61014-62185 7.11e-01 100 chrXV:906010-906201 9.99e-01 100 chrV:306408-306682 7.36e-01 100 chrV:51980-52739 9.99e-01 100 chrXV:1027864-1028297 9.92e-01 100 chrIV:884167-884610 1.16e-02 31_[+2(1.52e-05)]_40 chrXIV:104611-105160 1.26e-05 7_[+1(2.56e-09)]_70 chrIV:915702-915889 6.37e-01 100 chrIX:317947-318278 8.66e-01 100 chrXIV:499363-499709 2.44e-01 100 chrXIII:887678-888071 8.67e-01 100 chrIV:340259-340633 7.91e-01 100 chrIV:992585-993032 2.35e-01 100 chrII:332291-332718 8.82e-03 68_[+3(3.67e-06)]_17 chrIV:355231-355768 9.99e-01 100 chrV:151924-152274 9.52e-01 100 chrVII:828518-828993 3.90e-12 29_[-1(3.13e-10)]_[-2(2.37e-09)]_19 chrVII:364896-365449 1.00e+00 100 chrX:73389-73489 1.83e-01 100 chrIII:33-545 3.27e-05 7_[+3(1.16e-07)]_[+3(1.16e-07)]_6_\ [+3(6.40e-09)]_12_[+3(1.16e-07)]_[+3(1.64e-06)] chrXI:302684-303224 4.36e-03 21_[+2(6.09e-06)]_50 chrXVI:188629-188940 8.66e-04 53_[+3(3.37e-06)]_32 chrX:391867-391967 1.39e-04 60_[+3(6.71e-07)]_25 chrXI:313256-313671 4.34e-03 80_[+3(2.39e-06)]_5 chrV:18787-19117 5.20e-01 100 chrX:157468-157568 8.40e-01 100 chrV:397064-397311 6.34e-02 100 chrVII:1057421-1057643 9.99e-01 100 chrXII:232076-234333 1.61e-01 100 chrX:75286-75386 1.25e-03 65_[-3(1.03e-06)]_20 chrXV:901422-901802 3.71e-01 100 chrIV:449511-449932 9.69e-01 100 chrXI:158216-158599 2.36e-02 40_[+3(1.62e-05)]_6_[+3(6.62e-05)]_\ 24 chrVII:1083637-1083871 7.31e-01 100 chrIV:490911-491275 1.26e-01 100 chrV:145486-145930 6.13e-01 100 chrVII:876189-876718 1.93e-06 28_[+1(2.04e-09)]_49 chrIV:308026-308377 5.10e-03 70_[+3(9.05e-06)]_15 chrXIV:6487-6865 5.55e-05 11_[+3(6.40e-09)]_10_[+3(6.40e-09)]_\ 49 chrXVI:303991-304337 9.31e-01 100 chrIII:14294-14982 2.71e-01 100 chrV:207158-207660 1.14e-04 34_[+1(4.07e-08)]_43 chrXII:499185-499648 4.80e-01 100 chrVII:730937-731426 4.95e-11 15_[+2(2.91e-10)]_[+1(2.13e-08)]_33 chrXIII:296782-298862 1.36e-01 36_[+3(6.62e-05)]_49 chrV:433211-433655 1.47e-01 28_[-3(7.78e-05)]_57 chrII:235771-236023 8.52e-01 100 chrXII:710450-710892 9.30e-02 100 chrIII:138698-138894 6.58e-01 100 chrIV:129952-130439 8.15e-01 100 chrIV:1175642-1176177 6.20e-06 7_[+1(1.96e-08)]_70 chrXV:160427-160803 9.08e-01 100 chrX:390876-390976 3.23e-07 17_[-1(1.96e-08)]_[-2(9.47e-06)]_31 chrIV:1300943-1301332 1.31e-03 19_[+3(2.63e-06)]_3_[-3(2.28e-05)]_\ 48 chrI:142189-142738 9.51e-01 100 chrVII:541559-542165 5.94e-08 74_[+1(3.59e-10)]_3 chrIV:229710-230154 9.42e-01 100 chrII:562819-562961 6.09e-01 100 chrXV:87464-87882 9.77e-01 100 chrII:89667-89928 1.65e-04 33_[-3(3.67e-06)]_5_[-3(1.00e-07)]_\ 32 chrVII:827152-827273 9.96e-01 100 chrVII:845450-845895 4.35e-06 62_[+1(8.93e-10)]_15 chrXII:734629-735280 9.37e-01 100 chrIX:69224-69668 8.72e-01 100 chrVII:110400-110908 1.05e-04 32_[-1(4.07e-08)]_45 chrXII:852481-852925 3.69e-01 100 chrXV:228110-228563 2.90e-06 54_[+2(2.91e-10)]_17 chrV:148588-148771 7.92e-01 100 chrV:85139-85453 2.92e-03 22_[+3(2.63e-06)]_14_[+3(9.29e-07)]_\ 34 chrIV:541150-541954 9.61e-01 100 chrXIII:302790-303061 6.21e-03 82_[-3(6.26e-05)]_3 chrXV:167967-168429 5.27e-03 39_[-3(3.12e-06)]_46 chrXVI:280630-281882 8.62e-02 100 chrXIV:230543-230803 4.36e-01 100 chrIX:257373-257751 1.32e-02 18_[+3(6.65e-06)]_67 chrXII:366063-366485 5.24e-02 59_[-1(3.91e-05)]_18 chrV:23531-23906 5.78e-04 26_[+3(7.19e-06)]_59 chrIV:322937-323571 4.33e-01 100 chrXII:897700-898025 4.93e-03 46_[+3(1.99e-06)]_39 chrXVI:520190-520515 1.33e-03 59_[+3(6.13e-06)]_26 chrIV:1525317-1525658 6.72e-04 5_[-3(1.16e-07)]_80 chrVII:366098-366725 9.34e-01 100 chrXVI:337894-338338 1.08e-01 100 chrVI:64060-64338 8.26e-01 100 chrV:138456-139034 2.02e-07 7_[+1(3.13e-10)]_70 chrX:121799-121899 2.52e-01 100 chrIV:411260-411623 5.53e-04 41_[+3(4.79e-07)]_13_[+3(4.74e-06)]_\ 16 chrXII:636646-637090 4.29e-01 100 chrXIV:24407-24643 9.93e-01 100 chrVIII:127532-127759 1.88e-01 100 chrXVI:559979-560519 2.61e-13 10_[-1(1.77e-10)]_19_[-2(4.04e-10)]_\ 19 chrV:300165-300609 8.29e-01 100 chrV:354681-355313 2.14e-09 23_[+1(3.59e-10)]_35_[-3(2.75e-05)]_\ 4 chrXII:712957-713551 8.72e-01 100 chrIV:437506-437990 1.43e-01 100 chrXI:432215-432433 7.35e-01 100 chrXV:281931-282406 1.46e-01 100 chrXV:900719-900987 9.88e-01 100 chrXII:374157-374692 3.40e-05 18_[+1(2.74e-08)]_59 chrXIV:561383-561551 4.82e-02 62_[+3(9.09e-05)]_23 chrXV:94492-94836 3.90e-03 18_[+3(4.79e-07)]_67 chrIV:448583-449027 8.77e-01 100 chrVIII:556660-557214 6.41e-04 2_[-3(1.16e-07)]_18_[-3(4.22e-07)]_\ 9_[-3(1.16e-07)]_3_[-3(4.22e-07)]_8 chrV:288239-288733 8.64e-10 50_[-2(6.92e-14)]_21 chrIV:341280-341618 5.61e-04 43_[-3(1.25e-06)]_42 chrVIII:109747-109914 8.15e-01 100 chrXV:979788-980232 9.88e-01 100 chrVII:28-192 1.45e-01 100 chrV:322418-322903 9.76e-01 100 chrX:139157-139257 1.98e-01 100 chrVII:319590-320053 1.14e-04 46_[+1(4.07e-08)]_31 chrIV:332915-333200 1.00e+00 100 chrXVI:406185-406547 4.67e-03 52_[+3(1.37e-06)]_1_[+3(2.93e-05)]_\ 17 chrIX:257373-257805 8.18e-01 100 chrVIII:132861-133360 6.30e-08 9_[-2(2.15e-11)]_62 chrVII:787794-787929 6.37e-01 100 chrIX:177702-177960 4.30e-01 100 chrIV:1524473-1524910 2.91e-01 100 chrXIII:732030-732407 1.18e-03 35_[+3(3.22e-07)]_50 chrXVI:731933-732304 2.92e-03 33_[+3(1.64e-06)]_52 chrVII:920877-921106 6.24e-01 100 chrIV:217103-217595 1.19e-03 12_[+3(5.16e-06)]_73 chrIV:467346-467790 3.48e-01 100 chrVII:609744-609972 3.95e-01 100 chrIV:1021585-1021880 5.61e-01 100 chrX:651215-651315 1.64e-02 55_[+3(6.13e-06)]_10_[+3(3.11e-05)]_\ 5 chrXI:27-245 9.20e-02 100 chrXIV:63125-63591 1.33e-02 9_[-3(3.67e-06)]_76 chrVIII:85196-85573 3.30e-01 100 chrIII:289442-289886 8.90e-02 16_[+1(9.40e-05)]_61 chrXIII:888668-889037 1.58e-01 100 chrXV:980485-981057 1.83e-06 31_[+1(5.37e-10)]_46 chrXIV:229681-230162 6.54e-01 100 chrXII:819487-819710 7.27e-01 100 chrXI:379489-379902 1.60e-06 73_[+1(6.95e-10)]_4 chrVII:316942-317291 7.20e-01 100 chrVIII:451111-453004 2.28e-02 100 chrV:423113-423478 1.59e-02 24_[+3(2.86e-06)]_61 chrVIII:410976-411694 8.17e-01 100 chrXIII:520297-520741 9.96e-01 100 chrXIII:504703-505207 8.43e-02 100 chrXIII:420332-420881 3.81e-06 43_[-1(6.95e-10)]_34 chrIII:120681-120904 9.95e-01 100 chrIV:130597-130963 1.02e-03 18_[-3(1.37e-06)]_67 chrVII:702874-703245 7.52e-01 100 chrXI:458365-458912 8.43e-02 100 chrVIII:119731-119953 8.82e-01 100 chrVIII:115960-116396 5.50e-11 13_[-2(4.63e-15)]_58 chrXII:370511-371193 6.25e-02 100 chrII:414005-414272 7.72e-01 100 chrII:165106-165492 4.88e-02 7_[-2(8.77e-05)]_64 chrX:607882-607982 2.69e-03 27_[+3(4.22e-07)]_3_[+3(3.52e-05)]_\ 40 chrX:453385-453485 8.68e-01 100 chrIX:210470-210954 2.70e-13 12_[+2(8.35e-10)]_[+1(2.99e-11)]_36 chrXI:666441-666814 6.82e-05 34_[-3(6.40e-09)]_13_[-3(4.22e-07)]_\ 7_[-3(1.64e-06)]_1 chrIV:519548-519983 5.23e-07 37_[+2(3.67e-09)]_34 chrXV:671074-671446 3.01e-01 100 chrII:605730-606103 5.99e-04 47_[+3(6.71e-07)]_38 chrII:87947-88617 8.55e-01 100 chrVII:478315-478457 6.06e-01 100 chrII:405677-406184 3.90e-12 5_[+2(2.37e-09)]_[+1(3.13e-10)]_43 chrV:432378-432822 3.26e-01 100 chrIV:1352318-1352750 2.53e-07 16_[-2(3.24e-11)]_55 chrXV:80986-81161 2.83e-01 100 chrIII:121335-121779 7.26e-01 100 chrVII:255212-255433 9.07e-01 100 chrVI:191323-191854 6.87e-07 37_[-2(5.55e-10)]_34 chrVIII:5255-5666 1.05e-01 100 chrV:397584-397938 7.85e-01 100 chrX:608828-608928 1.99e-01 100 chrIV:1461571-1462074 7.51e-05 18_[-2(1.13e-08)]_53 chrI:521-1008 1.51e-01 100 chrXI:108712-109070 2.35e-04 59_[+3(6.26e-05)]_3_[+3(4.22e-07)]_\ 8 chrVII:439552-439857 7.64e-01 100 chrVII:185501-185960 9.98e-14 45_[-1(2.04e-09)]_[-2(3.24e-11)]_3 chrXIV:499789-501182 9.95e-01 100 chrIV:325372-325816 8.96e-01 100 chrX:156963-157063 8.00e-01 100 chrVII:73666-74125 3.57e-01 100 chrXII:201777-202155 9.01e-01 100 chrX:374233-374333 4.07e-07 67_[-1(3.13e-10)]_10 chrX:90084-90184 5.82e-02 39_[+3(1.74e-05)]_46 chrXIII:362877-363386 3.01e-04 19_[+1(4.07e-08)]_58 chrVI:4436-4978 6.99e-05 30_[+3(4.22e-07)]_[+3(6.40e-09)]_23_\ [+3(6.40e-09)]_2 chrXII:11045-11528 6.81e-05 1_[+3(1.16e-07)]_14_[+3(6.40e-09)]_\ 15_[+3(6.40e-09)]_7_[+3(3.67e-06)]_3 chrXV:623798-624567 9.44e-01 100 chrVII:882394-884037 3.66e-01 100 chrV:139679-140274 7.72e-01 100 chrIV:210630-211074 1.79e-01 100 chrXVI:173008-174037 8.77e-01 100 chrXIII:632775-632972 8.09e-01 100 chrIII:130421-130865 9.61e-01 100 chrXIII:195883-196433 3.23e-01 100 chrIV:946123-946622 1.38e-07 [+2(3.21e-06)]_14_[+1(9.58e-09)]_34 chrXIII:837706-838183 1.23e-02 44_[+2(3.21e-06)]_27 chrVIII:554190-554634 9.68e-01 100 chrXIII:123631-124075 5.70e-02 31_[-1(4.86e-05)]_46 chrXII:951000-951353 9.86e-01 100 chrVII:476048-476290 8.56e-01 100 chrIII:127543-127907 3.00e-06 50_[+2(2.91e-10)]_21 chrV:430986-431606 2.39e-02 [-1(5.48e-05)]_77 chrII:232413-232857 6.76e-01 100 chrII:169323-169588 9.53e-01 100 chrXIII:499813-500248 6.01e-01 100 chrXII:650124-650243 5.43e-01 100 chrVII:601137-601581 7.03e-01 100 chrXI:74403-74881 4.55e-11 41_[+2(2.91e-10)]_[+1(2.13e-08)]_7 chrII:6351-6791 1.18e-01 100 chrXV:709954-710382 9.30e-01 100 chrVIII:148952-149291 5.75e-03 10_[-3(3.12e-06)]_75 chrXIV:725972-726408 1.69e-06 38_[-2(3.67e-09)]_33 chrXV:866573-866919 9.50e-04 39_[+3(7.19e-06)]_5_[-3(3.67e-06)]_\ 26 chrX:531623-531723 4.35e-06 40_[+1(8.93e-10)]_37 chrII:266180-266676 7.70e-17 8_[+2(4.63e-15)]_[+1(2.56e-09)]_40 chrXII:369197-370101 9.99e-01 100 chrVIII:119855-120299 3.78e-01 100 chrV:435595-436032 9.98e-14 [-1(2.04e-09)]_[-2(3.24e-11)]_48 chrIV:509160-509580 8.59e-01 100 chrXII:650960-651284 9.98e-04 65_[+3(1.36e-07)]_20 chrIV:579342-580424 6.96e-01 100 chrV:99900-100401 6.56e-08 40_[+2(2.00e-08)]_[+1(1.19e-06)]_8 chrIV:1239793-1240028 6.07e-01 100 chrVIII:562250-562629 7.14e-05 76_[-3(6.40e-09)]_9 chrV:77824-78268 9.27e-01 100 chrXVI:64537-64981 3.68e-01 100 chrXV:110799-111260 2.88e-01 100 chrXIII:552133-552328 8.62e-01 100 chrVII:544405-544859 9.34e-05 6_[-1(1.52e-07)]_71 chrIV:1150636-1151156 4.74e-03 57_[-2(2.17e-05)]_14 chrXIII:258995-259483 4.19e-07 12_[-2(2.15e-11)]_59 chrV:443050-443526 5.87e-01 100 chrXII:793725-795228 6.39e-01 100 chrVII:555219-555674 1.00e+00 100 chrXV:438395-438957 5.18e-12 25_[+2(5.55e-10)]_23_[+1(8.71e-09)] chrXIV:25235-25475 9.01e-01 100 chrV:85860-86125 3.03e-01 100 chrVIII:291982-292426 7.80e-01 100 chrXII:150497-150938 6.22e-01 100 chrII:142346-142790 5.65e-01 100 chrII:604136-604485 1.00e-02 22_[+3(5.00e-05)]_1_[+3(7.19e-06)]_\ 47 chrXV:159305-160278 8.83e-03 3_[+1(8.90e-05)]_74 chrV:305608-306187 9.41e-01 100 chrVII:147978-148275 7.86e-01 100 chrI:180947-181491 8.43e-02 100 chrVIII:34346-35261 9.14e-01 100 chrV:492147-492609 2.05e-10 35_[-1(2.74e-08)]_[-2(1.12e-09)]_13 chrIV:355657-356101 2.41e-01 100 chrXV:1028577-1029124 1.08e-01 80_[-3(5.00e-05)]_5 chrVII:609455-609851 1.53e-02 28_[-3(3.31e-05)]_57 chrXV:442-1072 2.74e-01 100 chrIV:915920-916191 9.49e-01 100 chrV:438507-438940 1.60e-06 65_[+1(6.95e-10)]_12 chrV:311867-312284 3.88e-14 9_[-1(2.36e-10)]_[-2(2.15e-11)]_39 chrXIV:463286-463730 8.86e-01 100 chrXI:326152-327361 1.46e-01 100 chrXII:940296-940740 3.39e-01 100 chrXV:678835-679175 3.74e-03 54_[-3(1.13e-06)]_31 chrIV:1354539-1354881 9.55e-01 100 chrXII:498506-499010 4.40e-01 100 chrVIII:296903-297229 1.95e-02 38_[+3(2.13e-05)]_47 chrIX:183259-183704 2.37e-13 20_[-1(2.99e-11)]_[-2(8.35e-10)]_28 chrXVI:744094-744557 6.19e-09 16_[+2(8.73e-08)]_[+1(9.03e-08)]_32 chrVII:254115-254538 1.01e-03 49_[+3(2.63e-06)]_6_[-3(1.25e-06)]_\ 15 chrIX:254259-254540 1.21e-04 8_[-3(2.75e-07)]_35_[-3(3.11e-05)]_\ 27 chrIV:356646-357049 8.13e-01 100 chrVIII:385280-385689 3.30e-01 100 chrX:523799-523899 1.42e-07 56_[-2(2.15e-11)]_15 chrX:227784-227884 3.73e-01 100 chrI:142189-142735 9.51e-01 100 chrXIV:442833-443403 1.40e-01 100 chrXV:113582-114045 7.70e-17 47_[+2(4.63e-15)]_[+1(2.56e-09)]_1 chrXVI:733016-733460 9.50e-01 100 chrXV:24551-24981 4.45e-01 100 chrIV:433987-434564 6.53e-06 50_[-1(2.56e-09)]_27 chrXI:431076-431655 6.16e-01 100 chrV:140472-140865 2.37e-03 56_[-3(2.63e-06)]_29 chrXV:978799-979126 7.13e-02 100 chrXIII:225358-225721 1.28e-04 53_[+3(3.22e-07)]_32 chrXIV:585746-586547 5.87e-01 100 chrIV:980832-981259 5.42e-07 22_[-2(2.15e-11)]_49 chrXI:307886-308393 6.85e-06 66_[-1(6.95e-10)]_11 chrXV:79767-80107 2.33e-03 60_[-3(5.35e-07)]_25 chrXI:426919-427322 9.76e-01 100 chrVIII:555891-556382 6.82e-01 100 chrVIII:505830-506191 4.68e-03 40_[-3(2.18e-06)]_45 chrIII:137811-137945 4.85e-01 100 chrXII:898749-898984 1.00e+00 100 chrIII:168945-169190 4.89e-01 100 chrV:441804-442626 5.49e-01 100 chrXV:798335-798585 9.80e-01 100 chrXII:371407-371635 9.79e-01 100 chrXIII:761828-762270 9.93e-01 100 chrIII:114112-114709 9.89e-01 100 chrIV:50-319 2.46e-05 [+3(6.40e-09)]_85 chrVII:115287-115745 3.66e-06 30_[+2(5.55e-10)]_41 chrXII:198991-199676 4.40e-01 100 chrXVI:768943-769479 9.33e-06 57_[-1(8.71e-09)]_20 chrV:67776-68416 3.37e-01 100 chrXIII:224078-224384 8.68e-04 8_[-3(3.74e-07)]_10_[-3(1.06e-05)]_\ 52 chrXVI:775629-776024 6.59e-09 [-1(1.03e-07)]_[-2(1.51e-08)]_48 chrX:349035-349135 1.38e-01 100 chrXI:325204-325648 4.57e-01 100 chrIV:599744-600139 8.66e-02 58_[+3(5.92e-05)]_27 chrIV:439476-439920 1.01e-01 100 chrIX:174850-175332 6.53e-06 27_[+1(2.56e-09)]_50 chrXII:812076-812335 5.53e-01 100 chrXV:80670-80781 8.09e-01 100 chrV:424721-425165 7.61e-01 100 chrII:414844-415058 7.30e-01 100 chrXIV:776794-777041 3.03e-01 100 chrV:66918-67307 5.71e-02 100 chrIV:212296-212740 5.47e-01 100 chrXI:617650-618015 9.96e-01 100 chrXVI:795710-796048 7.56e-01 100 chrXVI:689303-689883 8.64e-10 30_[+2(6.92e-14)]_41 chrXI:109597-109992 9.87e-01 100 chrXIV:575267-575780 8.07e-01 100 chrXIII:145837-146270 1.89e-03 78_[+3(8.36e-07)]_7 chrIII:227736-228224 1.81e-07 20_[+2(3.24e-11)]_51 chrI:142775-143629 9.01e-01 100 chrVII:438968-439432 5.27e-01 100 chrXIV:627539-627983 6.31e-01 100 chrXV:1003884-1004417 7.41e-01 100 chrIII:142567-142977 3.76e-01 100 chrIV:601827-602271 6.02e-01 100 chrX:455235-455335 3.25e-01 100 chrXVI:55880-56521 1.79e-05 30_[-1(3.77e-08)]_47 chrXIII:892746-893190 1.91e-01 100 chrII:89294-89526 9.60e-02 100 chrIX:316714-317149 9.70e-01 100 chrXV:254643-254851 9.37e-01 100 chrXVI:860179-860586 3.11e-01 100 chrX:541310-541410 9.34e-05 54_[+1(1.52e-07)]_23 chrX:378161-378261 1.60e-06 75_[+1(6.95e-10)]_2 chrIV:1201497-1202015 4.30e-08 52_[+2(3.24e-11)]_19 chrIV:221972-222320 1.55e-06 14_[-3(7.78e-05)]_9_[-3(3.56e-10)]_\ 47 chrXVI:880065-880553 3.28e-13 48_[-1(2.99e-11)]_[-2(8.35e-10)] chrXI:162268-162764 3.90e-12 32_[-1(3.13e-10)]_[-2(2.37e-09)]_16 chrVII:148155-148599 9.61e-01 100 chrXIII:733129-733464 6.48e-01 100 chrXI:46546-46993 7.09e-14 27_[-1(6.95e-10)]_[-2(1.30e-10)]_21 chrIV:1204454-1204662 7.67e-01 100 chrXI:490758-491165 8.06e-06 65_[+2(1.12e-09)]_6 chrXIV:495217-495576 4.48e-03 31_[-3(2.63e-06)]_2_[-3(1.42e-05)]_\ 37 chrVII:401367-401790 5.94e-08 10_[-1(3.59e-10)]_67 chrV:130862-131352 4.20e-07 36_[-1(3.18e-09)]_41 chrXV:85101-85545 9.63e-01 100 chrIX:68194-68514 8.53e-04 43_[+3(3.22e-07)]_42 chrXIV:628736-629033 7.90e-01 100 chrX:204488-204588 7.95e-01 100 chrII:36221-36592 3.79e-07 50_[+2(4.04e-10)]_21 chrXIII:892712-892823 3.20e-01 100 chrX:418695-418795 9.65e-01 100 chrV:53543-53941 4.72e-03 24_[+3(1.25e-06)]_3_[-3(2.39e-06)]_\ 43 chrXVI:731077-731280 9.71e-01 100 chrVIII:104595-104823 9.25e-01 100 chrVII:736146-736674 4.07e-07 16_[+1(3.13e-10)]_61 chrV:6162-6661 1.01e-02 100 chrV:307297-307462 2.27e-01 100 chrVII:346017-346512 4.32e-03 36_[-1(1.32e-05)]_41 chrV:269263-269508 9.97e-01 100 chrII:606537-606704 7.92e-01 100 chrVIII:148338-148449 2.35e-01 100 chrIX:438815-439356 7.65e-04 100 chrVI:137280-137754 4.19e-11 30_[-1(2.13e-08)]_[-2(2.91e-10)]_18 chrIV:1016736-1017499 9.77e-01 100 chrVIII:466771-467227 7.29e-09 48_[+2(8.73e-08)]_[+1(7.34e-08)] chrIII:295293-295755 7.70e-17 18_[+2(4.63e-15)]_[+1(2.56e-09)]_30 chrXIII:752944-753305 2.50e-01 100 chrVIII:386374-386889 4.71e-01 100 chrVII:857241-857676 7.66e-05 44_[-2(1.13e-08)]_27 chrXII:1051859-1052339 2.70e-13 33_[-1(2.99e-11)]_[-2(8.35e-10)]_15 chrXIII:290567-291002 4.17e-01 100 chrII:88957-89401 5.56e-01 100 chrV:117743-118308 6.02e-02 100 chrXIV:619503-619947 9.80e-01 100 chrXV:853992-854441 3.88e-14 32_[-1(2.36e-10)]_[-2(2.15e-11)]_16 chrV:301569-301844 9.89e-01 100 chrIV:221428-221694 9.58e-01 100 chrXV:903885-904646 9.93e-01 100 chrVII:534815-535249 2.04e-02 21_[-3(4.35e-06)]_64 chrXIV:567899-568467 5.10e-07 49_[+1(5.37e-10)]_28 chrVII:794188-794642 7.51e-08 60_[+2(2.15e-11)]_11 chrXVI:407492-407836 8.34e-01 100 chrV:487143-487578 5.94e-08 32_[-1(3.59e-10)]_45 chrVII:774143-774588 1.68e-10 42_[+2(1.30e-08)]_[+1(1.82e-09)]_6 chrII:231123-231567 9.95e-01 100 chrXII:1064868-1065352 2.83e-05 32_[-3(6.40e-09)]_11_[-3(4.22e-07)]_\ 3_[-3(4.22e-07)]_9 chrXII:489289-489573 5.85e-01 100 chrVIII:103894-104277 4.15e-01 100 chrX:120446-120546 2.55e-01 100 chrIX:69490-69699 3.46e-01 100 chrXIII:923399-923835 3.07e-01 100 chrXV:1006751-1006925 8.27e-01 100 chrII:226869-227373 1.42e-07 12_[+2(2.15e-11)]_59 chrX:703277-703377 6.77e-04 23_[-3(1.13e-06)]_62 chrVIII:381433-382124 2.83e-01 100 chrXIII:168590-169122 1.41e-05 42_[+1(9.58e-09)]_35 chrXVI:75471-75691 9.17e-01 100 chrXII:589657-590101 9.98e-01 100 chrVIII:150256-150700 9.45e-01 100 chrVII:648957-649418 2.33e-02 11_[-3(5.16e-06)]_74 chrXIII:372324-372762 6.93e-01 100 chrIV:652745-653189 7.27e-01 100 chrXIII:501096-501540 9.16e-01 100 chrXVI:279766-280210 3.02e-01 100 chrXVI:699950-700347 2.63e-02 68_[+3(6.26e-05)]_17 chrIII:122051-122495 8.63e-01 100 chrVIII:382238-382834 7.20e-01 100 chrVII:601153-601273 9.42e-01 100 chrXI:159194-159496 7.94e-01 100 chrXII:818802-819173 1.31e-03 59_[+3(6.71e-07)]_26 chrXII:731885-732300 3.06e-04 57_[+2(5.23e-08)]_14 chrX:415826-415926 1.32e-01 100 chrXIV:783856-784183 5.00e-05 67_[-3(4.88e-08)]_[-3(4.22e-07)]_3 chrIV:117153-117566 2.53e-02 58_[+3(7.77e-06)]_1_[+3(1.74e-05)]_\ 11 chrXV:22096-22540 5.74e-01 100 chrX:538351-538451 4.36e-10 48_[+2(3.09e-09)]_[+1(1.96e-08)] chrII:558072-558211 8.35e-01 100 chrXII:687612-688162 1.60e-06 33_[-1(6.95e-10)]_44 chrVII:310450-310939 1.36e-02 39_[+3(2.86e-06)]_[+3(6.26e-05)]_31 chrXIV:569720-570091 2.70e-13 23_[-1(2.99e-11)]_[-2(8.35e-10)]_25 chrX:121465-121565 2.77e-01 100 chrIV:579052-579383 2.45e-02 36_[+3(1.74e-05)]_5_[+3(8.20e-05)]_\ 29 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************