Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.013254
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.057047
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.072514
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.013588
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.064065
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/background
Finished invoke:
  name: bg  status: 0  time: 0.011063
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 923.939777
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 87.98913
Invoking:
  centrimo -seqlen 440 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.196169
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.491399
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/background -primary DMBSGGRRTCGAACCSVKGAYCTYMHGRT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.681184
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/background -primary SSCYYWWMCMACTRVGCCAHV /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.649297
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/background -primary HWACAYCCRTACAYY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.524785
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/background -primary DCGCCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.284811
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.295386
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.270397
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/background -primary CCAACTKG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.280611
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/background -primary CCAAVAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.303498
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/background -primary RAARAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.539521
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/background -primary CACGGTGM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.266931
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/background -primary AAGCGWGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.239884
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/background -primary CACTATAK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.252356
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/background -primary ACTCASG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.269925
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/background -primary GCAYGCGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.230765
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/background --motif DMBSGGRRTCGAACCSVKGAYCTYMHGRT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.246957
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/background --motif SSCYYWWMCMACTRVGCCAHV /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.231397
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/background --motif HWACAYCCRTACAYY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.227454
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/background --motif DCGCCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.131086
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.130905
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.132652
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/background --motif CCAACTKG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.130223
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/background --motif CCAAVAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.132772
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/background --motif RAARAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.116137
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/background --motif CACGGTGM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.134378
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/background --motif AAGCGWGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.132211
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/background --motif CACTATAK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.131478
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/background --motif ACTCASG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.130523
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/background --motif GCAYGCGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/BY4741--MGA2.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.132329
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--MGA2/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.159692
Done