******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--GAL11/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrVII:788305-788779 1.0000 100 chrIV:132708-133287 1.0000 100 chrXV:900752-900923 1.0000 100 chrVII:876177-876645 1.0000 100 chrIV:579047-580127 1.0000 100 chrXII:932057-932516 1.0000 100 chrIV:437492-438011 1.0000 100 chrXIV:576011-576811 1.0000 100 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100 chrVIII:466740-467224 1.0000 100 chrV:138441-138989 1.0000 100 chrXI:379481-379925 1.0000 100 chrXVI:787045-787521 1.0000 100 chrXI:618783-619241 1.0000 100 chrV:487156-487597 1.0000 100 chrV:207145-207621 1.0000 100 chrIV:520740-521203 1.0000 100 chrXVI:789525-790001 1.0000 100 chrXV:33410-33886 1.0000 100 chrVII:706906-707411 1.0000 100 chrXVI:242801-243066 1.0000 100 chrIV:1256890-1257311 1.0000 100 chrIV:1352311-1352758 1.0000 100 chrXV:853997-854456 1.0000 100 chrXV:709972-710397 1.0000 100 chrXII:1028192-1028580 1.0000 100 chrXV:978568-979178 1.0000 100 chrXIV:230450-230769 1.0000 100 chrXII:449373-449849 1.0000 100 chrXV:725346-725585 1.0000 100 chrX:390880-390980 1.0000 100 chrV:435611-436055 1.0000 100 chrXII:1018946-1019403 1.0000 100 chrXIII:504685-505194 1.0000 100 chrV:67119-67301 1.0000 100 chrXV:445508-445834 1.0000 100 chrXVI:520172-520534 1.0000 100 chrX:422685-422785 1.0000 100 chrIX:316101-316617 1.0000 100 chrIII:168128-168570 1.0000 100 chrX:374226-374326 1.0000 100 chrIII:177141-177589 1.0000 100 chrIV:309393-309772 1.0000 100 chrXV:117905-118200 1.0000 100 chrXIV:6460-6882 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--GAL11/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--GAL11/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--GAL11/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 553 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 55300 N= 553 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.298 C 0.202 G 0.202 T 0.298 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--GAL11/background): A 0.311 C 0.189 G 0.189 T 0.311 ******************************************************************************** ******************************************************************************** MOTIF DNSSCTYWACCVACTGGGCCA MEME-1 width = 21 sites = 84 llr = 1383 E-value = 2.1e-256 ******************************************************************************** -------------------------------------------------------------------------------- Motif DNSSCTYWACCVACTGGGCCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 33:::11573:49::121::a pos.-specific C 1264924:17a3:8:22:a7: probability G 4345:21:2::21::569::: matrix T 23::15551::1:2a2:::3: bits 2.4 * * 2.2 * * 1.9 * * ** 1.7 * * ** ** * Relative 1.4 * * ** **** Entropy 1.2 *** ** *** **** (23.7 bits) 1.0 *** ** *** ***** 0.7 *** * ** *** ***** 0.5 *** ***** *** ***** 0.2 * ******************* 0.0 --------------------- Multilevel GGCGCTTTACCAACTGGGCCA consensus AAGC CA A C C T sequence TT G C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DNSSCTYWACCVACTGGGCCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrIX:210463-210919 - 31 2.44e-11 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCAGA chrXIV:602138-602534 - 33 2.44e-11 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCATT chrVII:738885-739362 - 56 2.44e-11 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCTAT chrXVI:819303-819780 - 45 2.44e-11 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCATT chrXIV:569721-570116 + 45 2.44e-11 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCACT chrXII:734625-735044 - 25 2.44e-11 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCAAA chrIX:183261-183712 + 50 2.44e-11 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCAGG chrX:58925-59025 + 44 6.05e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCTTC chrXIV:560433-561007 + 68 6.05e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCCCG chrVIII:115950-116397 + 29 6.05e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCTCT chrIII:295277-295738 - 34 6.05e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCTTA chrXV:853997-854456 + 56 1.35e-10 TTGCAAGGGA AGCGCGCTACCAACTGCGCCA TGTGCCCTGA chrVII:794167-794642 - 70 1.35e-10 TTGCAAGGGA AGCGCGCTACCAACTGCGCCA TGTGCCCGCA chrXII:214709-215196 + 26 1.35e-10 TTGCAAGGGA AGCGCGCTACCAACTGCGCCA TGTGCCCTAA chrV:311858-312311 + 34 1.35e-10 TTGCAAGGGA AGCGCGCTACCAACTGCGCCA TGTGCCCAGA chrXII:975839-976239 + 40 5.48e-10 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCTTT chrXI:74392-74886 - 42 5.48e-10 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCTAA chrXVI:689312-689848 - 42 5.48e-10 TTTCAAGTCT GTCGCCTTAACCACTCGGCCA TAGTGCCCAA chrXV:228112-228568 - 48 5.48e-10 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCTAA chrVI:137292-137775 + 49 5.48e-10 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCAGT chrXII:592352-592849 + 42 1.37e-09 CCTAAATCTG ACGCCTTAAACCACTCGGCCA AACTCCCATT chrXII:731854-732317 - 62 1.37e-09 CCTAAATCTG ACGCCTTAAACCACTCGGCCA AACTCCCATT chrIV:1150640-1151155 + 67 1.58e-09 AATAGCAGGC ATCGCCTTAACCACTCGGCCA CTGGGACTGA chrXI:219699-220112 - 47 2.08e-09 ATGCTAAGGG AGCGCGCTACCGACTACGCCA CACGCCCTAT chrXII:656769-657189 + 50 2.08e-09 ATGCTAAGGG AGCGCGCTACCGACTACGCCA CACGCCCAAT chrVII:561413-561978 + 71 2.71e-09 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCAA chrIV:1305431-1305897 - 23 2.71e-09 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCTTA chrII:226847-227377 - 20 2.71e-09 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCTCG chrV:86348-86862 - 56 2.71e-09 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCATA chrIV:437492-438011 - 78 2.71e-09 CT TTCGCCTTAACCACTCGGCCA AGTTGCCTTA chrXV:438439-438960 - 1 3.09e-09 TTAAAAGCCG AACGCTCTACCAACTGAGCTA chrXI:578767-579254 - 12 3.09e-09 TTAAAAGCCG AACGCTCTACCAACTGAGCTA ACAAGGATGA chrVII:115262-115769 - 30 3.09e-09 TTAAAAGCCG AACGCTCTACCAACTGAGCTA ACAAGGATGA chrII:36200-36594 - 58 5.76e-09 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTTA chrVIII:358283-358801 + 50 5.76e-09 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTTA chrVI:157734-158208 + 59 5.76e-09 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTTC chrXIII:352059-352481 - 67 5.76e-09 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTTA chrXVI:622351-622849 + 54 5.76e-09 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCATA chrXVI:560007-560523 + 47 5.76e-09 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTCA chrV:435611-436055 + 14 7.30e-09 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTCT chrIV:1352311-1352758 + 27 7.30e-09 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTAT chrVII:185530-185969 + 60 7.30e-09 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTAT chrXI:202779-203290 - 22 7.30e-09 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTTT chrVI:226506-226953 + 54 7.30e-09 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCATT chrVII:122021-122537 - 47 7.30e-09 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTAA chrIV:519537-519980 - 42 7.30e-09 CTTAAGTCTG CCGCCTTAGACCACTCGGCCA ACCCTCCGTA chrV:135174-135727 + 70 7.30e-09 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTTT chrIV:1201489-1202007 - 59 7.30e-09 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTAT chrXVI:581862-582328 - 24 7.30e-09 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTCT chrX:424297-424397 + 30 7.30e-09 CTTAAGTCTG CCGCCTTAGACCACTCGGCCA ACCCTCCATC chrXIV:725964-726425 + 46 7.30e-09 CTTAAGTCTG CCGCCTTAGACCACTCGGCCA ACCCTCCAAA chrVII:876177-876645 - 40 7.30e-09 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTAT chrXIII:504685-505194 - 13 1.27e-08 CTTGAATCAG GCGCCTTAGACCGCTCGGCCA AACAACCACT chrXII:628141-628683 - 28 1.27e-08 CTTGAATCAG GCGCCTTAGACCGCTCGGCCA AACAACCACT chrVII:422880-423378 - 20 1.27e-08 CTTGAATCAG GCGCCTTAGACCGCTCGGCCA AACAACCACT chrIV:1461556-1462087 + 31 1.27e-08 CTTGAATCAG GCGCCTTAGACCGCTCGGCCA AACAACCACT chrVII:857225-857682 + 61 1.27e-08 CTTGAATCAG GCGCCTTAGACCGCTCGGCCA AACAACCACT chrVII:205306-205778 - 36 1.27e-08 CTTGAATCAG GCGCCTTAGACCGCTCGGCCA AACAACCACT chrIV:619757-620237 + 67 3.13e-08 TTCGTAGCCA GACGCCGTGACCATTGGGCCA CGAGGAACAA chrXII:374153-374670 - 1 3.13e-08 TTCGTAGCCA GACGCCGTGACCATTGGGCCA chrXI:490741-491173 - 68 3.13e-08 TTCGTAGCCA GACGCCGTGACCATTGGGCCA CGAGGAACAA chrX:233706-233806 - 37 3.13e-08 TTCGTAGCCA GACGCCGTGACCATTGGGCCA CGAGGAACAA chrX:422685-422785 - 24 9.61e-08 TTATGAGACT GACGCTCTTCCTACTGAGCTA CTGAAGCATA chrX:390880-390980 + 44 9.61e-08 TTATGAGACT GACGCTCTTCCTACTGAGCTA CTGAAGCACT chrIV:1175616-1176103 - 27 9.61e-08 TTATGAGACT GACGCTCTTCCTACTGAGCTA CTGAAGCTTT chrXV:976182-976702 - 36 9.61e-08 TTATGAGACT GACGCTCTTCCTACTGAGCTA CTGAAGCGCA chrXI:379481-379925 - 34 1.52e-07 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCTAT chrX:378146-378246 - 45 1.52e-07 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCTAT chrXIII:420401-420888 + 40 1.52e-07 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCTGT chrXIII:372282-372719 + 41 1.52e-07 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCAGG chrV:469248-469708 - 36 1.52e-07 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCAAT chrXII:687632-688150 + 64 1.52e-07 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCTAT chrIV:884136-884632 - 34 1.52e-07 CTATAAGCAC GAAGCTCTAACCACTGAGCTA CACGAGCATT chrVII:823256-823709 - 57 1.52e-07 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCACT chrX:354047-354147 - 24 2.02e-07 TACAGTCTTG CGCCTTAAACCAACTTGGCTA CCGAGAGTGA chrX:542763-542863 + 51 2.02e-07 TACAGTCTTG CGCCTTAAACCAACTTGGCTA CCGAGAGTAT chrVI:210426-210910 + 62 2.02e-07 TACAGTCTTG CGCCTTAAACCAACTTGGCTA CCGAGAGTCG chrXIII:168572-169079 - 27 2.02e-07 TACAGTCTTG CGCCTTAAACCAACTTGGCTA CCGAGAGTGA chrXV:287974-288440 - 42 2.02e-07 TACAGTCTTG CGCCTTAAACCAACTTGGCTA CCGAGAGAAG chrXIII:837717-838195 - 29 2.02e-07 TACAGTCTTG CGCCTTAAACCAACTTGGCTA CCGAGAGTCA chrIV:946103-946616 - 10 2.02e-07 TACAGTCTTG CGCCTTAAACCAACTTGGCTA CCGAGAGTC chrXV:989097-989393 + 52 3.13e-06 AGCGACAGGC ACACGCGAACCGGCTAGGCCA CCCAAACGTC chrII:563825-564301 + 79 3.62e-06 ATTGGTGGAA TCGGCTGTGACTGTTTGACCA T chrIX:129368-129844 + 9 6.52e-06 AGCTCATT TCGTCTTATACAATTAAGCTA CGTGACTACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DNSSCTYWACCVACTGGGCCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIX:210463-210919 2.4e-11 30_[-1]_49 chrXIV:602138-602534 2.4e-11 32_[-1]_47 chrVII:738885-739362 2.4e-11 55_[-1]_24 chrXVI:819303-819780 2.4e-11 44_[-1]_35 chrXIV:569721-570116 2.4e-11 44_[+1]_35 chrXII:734625-735044 2.4e-11 24_[-1]_55 chrIX:183261-183712 2.4e-11 49_[+1]_30 chrX:58925-59025 6.1e-11 43_[+1]_36 chrXIV:560433-561007 6.1e-11 67_[+1]_12 chrVIII:115950-116397 6.1e-11 28_[+1]_51 chrIII:295277-295738 6.1e-11 33_[-1]_46 chrXV:853997-854456 1.4e-10 55_[+1]_24 chrVII:794167-794642 1.4e-10 69_[-1]_10 chrXII:214709-215196 1.4e-10 25_[+1]_54 chrV:311858-312311 1.4e-10 33_[+1]_46 chrXII:975839-976239 5.5e-10 39_[+1]_40 chrXI:74392-74886 5.5e-10 41_[-1]_38 chrXVI:689312-689848 5.5e-10 41_[-1]_38 chrXV:228112-228568 5.5e-10 47_[-1]_32 chrVI:137292-137775 5.5e-10 48_[+1]_31 chrXII:592352-592849 1.4e-09 41_[+1]_38 chrXII:731854-732317 1.4e-09 61_[-1]_18 chrIV:1150640-1151155 1.6e-09 66_[+1]_13 chrXI:219699-220112 2.1e-09 46_[-1]_33 chrXII:656769-657189 2.1e-09 49_[+1]_30 chrVII:561413-561978 2.7e-09 70_[+1]_9 chrIV:1305431-1305897 2.7e-09 22_[-1]_57 chrII:226847-227377 2.7e-09 19_[-1]_60 chrV:86348-86862 2.7e-09 55_[-1]_24 chrIV:437492-438011 2.7e-09 77_[-1]_2 chrXV:438439-438960 3.1e-09 [-1]_79 chrXI:578767-579254 3.1e-09 11_[-1]_68 chrVII:115262-115769 3.1e-09 29_[-1]_50 chrII:36200-36594 5.8e-09 57_[-1]_22 chrVIII:358283-358801 5.8e-09 49_[+1]_30 chrVI:157734-158208 5.8e-09 58_[+1]_21 chrXIII:352059-352481 5.8e-09 66_[-1]_13 chrXVI:622351-622849 5.8e-09 53_[+1]_26 chrXVI:560007-560523 5.8e-09 46_[+1]_33 chrV:435611-436055 7.3e-09 13_[+1]_66 chrIV:1352311-1352758 7.3e-09 26_[+1]_53 chrVII:185530-185969 7.3e-09 59_[+1]_20 chrXI:202779-203290 7.3e-09 21_[-1]_58 chrVI:226506-226953 7.3e-09 53_[+1]_26 chrVII:122021-122537 7.3e-09 46_[-1]_33 chrIV:519537-519980 7.3e-09 41_[-1]_38 chrV:135174-135727 7.3e-09 69_[+1]_10 chrIV:1201489-1202007 7.3e-09 58_[-1]_21 chrXVI:581862-582328 7.3e-09 23_[-1]_56 chrX:424297-424397 7.3e-09 29_[+1]_50 chrXIV:725964-726425 7.3e-09 45_[+1]_34 chrVII:876177-876645 7.3e-09 39_[-1]_40 chrXIII:504685-505194 1.3e-08 12_[-1]_67 chrXII:628141-628683 1.3e-08 27_[-1]_52 chrVII:422880-423378 1.3e-08 19_[-1]_60 chrIV:1461556-1462087 1.3e-08 30_[+1]_49 chrVII:857225-857682 1.3e-08 60_[+1]_19 chrVII:205306-205778 1.3e-08 35_[-1]_44 chrIV:619757-620237 3.1e-08 66_[+1]_13 chrXII:374153-374670 3.1e-08 [-1]_79 chrXI:490741-491173 3.1e-08 67_[-1]_12 chrX:233706-233806 3.1e-08 36_[-1]_43 chrX:422685-422785 9.6e-08 23_[-1]_56 chrX:390880-390980 9.6e-08 43_[+1]_36 chrIV:1175616-1176103 9.6e-08 26_[-1]_53 chrXV:976182-976702 9.6e-08 35_[-1]_44 chrXI:379481-379925 1.5e-07 33_[-1]_46 chrX:378146-378246 1.5e-07 44_[-1]_35 chrXIII:420401-420888 1.5e-07 39_[+1]_40 chrXIII:372282-372719 1.5e-07 40_[+1]_39 chrV:469248-469708 1.5e-07 35_[-1]_44 chrXII:687632-688150 1.5e-07 63_[+1]_16 chrIV:884136-884632 1.5e-07 33_[-1]_46 chrVII:823256-823709 1.5e-07 56_[-1]_23 chrX:354047-354147 2e-07 23_[-1]_56 chrX:542763-542863 2e-07 50_[+1]_29 chrVI:210426-210910 2e-07 61_[+1]_18 chrXIII:168572-169079 2e-07 26_[-1]_53 chrXV:287974-288440 2e-07 41_[-1]_38 chrXIII:837717-838195 2e-07 28_[-1]_51 chrIV:946103-946616 2e-07 9_[-1]_70 chrXV:989097-989393 3.1e-06 51_[+1]_28 chrII:563825-564301 3.6e-06 78_[+1]_1 chrIX:129368-129844 6.5e-06 8_[+1]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DNSSCTYWACCVACTGGGCCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DNSSCTYWACCVACTGGGCCA width=21 seqs=84 chrIX:210463-210919 ( 31) GTGCCTTAACCAACTGGGCCA 1 chrXIV:602138-602534 ( 33) GTGCCTTAACCAACTGGGCCA 1 chrVII:738885-739362 ( 56) GTGCCTTAACCAACTGGGCCA 1 chrXVI:819303-819780 ( 45) GTGCCTTAACCAACTGGGCCA 1 chrXIV:569721-570116 ( 45) GTGCCTTAACCAACTGGGCCA 1 chrXII:734625-735044 ( 25) GTGCCTTAACCAACTGGGCCA 1 chrIX:183261-183712 ( 50) GTGCCTTAACCAACTGGGCCA 1 chrX:58925-59025 ( 44) GGCGCCTTACCAACTTGGCCA 1 chrXIV:560433-561007 ( 68) GGCGCCTTACCAACTTGGCCA 1 chrVIII:115950-116397 ( 29) GGCGCCTTACCAACTTGGCCA 1 chrIII:295277-295738 ( 34) GGCGCCTTACCAACTTGGCCA 1 chrXV:853997-854456 ( 56) AGCGCGCTACCAACTGCGCCA 1 chrVII:794167-794642 ( 70) AGCGCGCTACCAACTGCGCCA 1 chrXII:214709-215196 ( 26) AGCGCGCTACCAACTGCGCCA 1 chrV:311858-312311 ( 34) AGCGCGCTACCAACTGCGCCA 1 chrXII:975839-976239 ( 40) ACGCCTTAACCAACTTGGCCA 1 chrXI:74392-74886 ( 42) ACGCCTTAACCAACTTGGCCA 1 chrXVI:689312-689848 ( 42) GTCGCCTTAACCACTCGGCCA 1 chrXV:228112-228568 ( 48) ACGCCTTAACCAACTTGGCCA 1 chrVI:137292-137775 ( 49) ACGCCTTAACCAACTTGGCCA 1 chrXII:592352-592849 ( 42) ACGCCTTAAACCACTCGGCCA 1 chrXII:731854-732317 ( 62) ACGCCTTAAACCACTCGGCCA 1 chrIV:1150640-1151155 ( 67) ATCGCCTTAACCACTCGGCCA 1 chrXI:219699-220112 ( 47) AGCGCGCTACCGACTACGCCA 1 chrXII:656769-657189 ( 50) AGCGCGCTACCGACTACGCCA 1 chrVII:561413-561978 ( 71) TTCGCCTTAACCACTCGGCCA 1 chrIV:1305431-1305897 ( 23) TTCGCCTTAACCACTCGGCCA 1 chrII:226847-227377 ( 20) TTCGCCTTAACCACTCGGCCA 1 chrV:86348-86862 ( 56) TTCGCCTTAACCACTCGGCCA 1 chrIV:437492-438011 ( 78) TTCGCCTTAACCACTCGGCCA 1 chrXV:438439-438960 ( 1) AACGCTCTACCAACTGAGCTA 1 chrXI:578767-579254 ( 12) AACGCTCTACCAACTGAGCTA 1 chrVII:115262-115769 ( 30) AACGCTCTACCAACTGAGCTA 1 chrII:36200-36594 ( 58) GGCGCTCTCCCAACTGAGCTA 1 chrVIII:358283-358801 ( 50) GGCGCTCTCCCAACTGAGCTA 1 chrVI:157734-158208 ( 59) GGCGCTCTCCCAACTGAGCTA 1 chrXIII:352059-352481 ( 67) GGCGCTCTCCCAACTGAGCTA 1 chrXVI:622351-622849 ( 54) GGCGCTCTCCCAACTGAGCTA 1 chrXVI:560007-560523 ( 47) GGCGCTCTCCCAACTGAGCTA 1 chrV:435611-436055 ( 14) TACGCGCTACCGATTGCGCCA 1 chrIV:1352311-1352758 ( 27) TACGCGCTACCGATTGCGCCA 1 chrVII:185530-185969 ( 60) TACGCGCTACCGATTGCGCCA 1 chrXI:202779-203290 ( 22) TACGCGCTACCGATTGCGCCA 1 chrVI:226506-226953 ( 54) TACGCGCTACCGATTGCGCCA 1 chrVII:122021-122537 ( 47) TACGCGCTACCGATTGCGCCA 1 chrIV:519537-519980 ( 42) CCGCCTTAGACCACTCGGCCA 1 chrV:135174-135727 ( 70) TACGCGCTACCGATTGCGCCA 1 chrIV:1201489-1202007 ( 59) TACGCGCTACCGATTGCGCCA 1 chrXVI:581862-582328 ( 24) TACGCGCTACCGATTGCGCCA 1 chrX:424297-424397 ( 30) CCGCCTTAGACCACTCGGCCA 1 chrXIV:725964-726425 ( 46) CCGCCTTAGACCACTCGGCCA 1 chrVII:876177-876645 ( 40) TACGCGCTACCGATTGCGCCA 1 chrXIII:504685-505194 ( 13) GCGCCTTAGACCGCTCGGCCA 1 chrXII:628141-628683 ( 28) GCGCCTTAGACCGCTCGGCCA 1 chrVII:422880-423378 ( 20) GCGCCTTAGACCGCTCGGCCA 1 chrIV:1461556-1462087 ( 31) GCGCCTTAGACCGCTCGGCCA 1 chrVII:857225-857682 ( 61) GCGCCTTAGACCGCTCGGCCA 1 chrVII:205306-205778 ( 36) GCGCCTTAGACCGCTCGGCCA 1 chrIV:619757-620237 ( 67) GACGCCGTGACCATTGGGCCA 1 chrXII:374153-374670 ( 1) GACGCCGTGACCATTGGGCCA 1 chrXI:490741-491173 ( 68) GACGCCGTGACCATTGGGCCA 1 chrX:233706-233806 ( 37) GACGCCGTGACCATTGGGCCA 1 chrX:422685-422785 ( 24) GACGCTCTTCCTACTGAGCTA 1 chrX:390880-390980 ( 44) GACGCTCTTCCTACTGAGCTA 1 chrIV:1175616-1176103 ( 27) GACGCTCTTCCTACTGAGCTA 1 chrXV:976182-976702 ( 36) GACGCTCTTCCTACTGAGCTA 1 chrXI:379481-379925 ( 34) ATGCCATAACCGACTAGACCA 1 chrX:378146-378246 ( 45) ATGCCATAACCGACTAGACCA 1 chrXIII:420401-420888 ( 40) ATGCCATAACCGACTAGACCA 1 chrXIII:372282-372719 ( 41) ATGCCATAACCGACTAGACCA 1 chrV:469248-469708 ( 36) ATGCCATAACCGACTAGACCA 1 chrXII:687632-688150 ( 64) ATGCCATAACCGACTAGACCA 1 chrIV:884136-884632 ( 34) GAAGCTCTAACCACTGAGCTA 1 chrVII:823256-823709 ( 57) ATGCCATAACCGACTAGACCA 1 chrX:354047-354147 ( 24) CGCCTTAAACCAACTTGGCTA 1 chrX:542763-542863 ( 51) CGCCTTAAACCAACTTGGCTA 1 chrVI:210426-210910 ( 62) CGCCTTAAACCAACTTGGCTA 1 chrXIII:168572-169079 ( 27) CGCCTTAAACCAACTTGGCTA 1 chrXV:287974-288440 ( 42) CGCCTTAAACCAACTTGGCTA 1 chrXIII:837717-838195 ( 29) CGCCTTAAACCAACTTGGCTA 1 chrIV:946103-946616 ( 10) CGCCTTAAACCAACTTGGCTA 1 chrXV:989097-989393 ( 52) ACACGCGAACCGGCTAGGCCA 1 chrII:563825-564301 ( 79) TCGGCTGTGACTGTTTGACCA 1 chrIX:129368-129844 ( 9) TCGTCTTATACAATTAAGCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DNSSCTYWACCVACTGGGCCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 44240 bayes= 10.5446 E= 2.1e-256 -12 -67 105 -62 -25 18 53 -31 -370 168 96 -1304 -1304 122 153 -470 -1304 226 -399 -190 -190 1 1 79 -190 92 -141 65 54 -1304 -1304 82 118 -141 -18 -238 -6 189 -1304 -1304 -1304 240 -1304 -1304 46 53 33 -238 154 -1304 -99 -1304 -1304 210 -1304 -71 -1304 -1304 -1304 169 -125 18 129 -71 -80 1 174 -1304 -171 -1304 226 -1304 -1304 240 -1304 -1304 -1304 196 -1304 -25 169 -1304 -1304 -1304 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DNSSCTYWACCVACTGGGCCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 84 E= 2.1e-256 0.285714 0.119048 0.392857 0.202381 0.261905 0.214286 0.273810 0.250000 0.023810 0.607143 0.369048 0.000000 0.000000 0.440476 0.547619 0.011905 0.000000 0.904762 0.011905 0.083333 0.083333 0.190476 0.190476 0.535714 0.083333 0.357143 0.071429 0.488095 0.452381 0.000000 0.000000 0.547619 0.702381 0.071429 0.166667 0.059524 0.297619 0.702381 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.428571 0.273810 0.238095 0.059524 0.904762 0.000000 0.095238 0.000000 0.000000 0.809524 0.000000 0.190476 0.000000 0.000000 0.000000 1.000000 0.130952 0.214286 0.464286 0.190476 0.178571 0.190476 0.630952 0.000000 0.095238 0.000000 0.904762 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.738095 0.000000 0.261905 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DNSSCTYWACCVACTGGGCCA MEME-1 regular expression -------------------------------------------------------------------------------- [GAT][GATC][CG][GC]CT[TC][TA]A[CA]C[ACG]ACT[GC]GGC[CT]A -------------------------------------------------------------------------------- Time 298.61 secs. ******************************************************************************** ******************************************************************************** MOTIF TCGAACCSVKGAYCTYMNGRTTAH MEME-2 width = 24 sites = 81 llr = 1358 E-value = 6.2e-246 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCGAACCSVKGAYCTYMNGRTTAH MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::aa::12:27:1:132:5:163 pos.-specific C :9:::a7532::5635532112:3 probability G ::a:::13458::2:::2831121 matrix T a1::::2::3:2517423::8612 bits 2.4 * * 2.2 * * 1.9 * * 1.7 **** * * * Relative 1.4 ****** * * Entropy 1.2 ****** * * (24.2 bits) 1.0 ******* * * * * * 0.7 ******** ******* * * 0.5 ***************** ***** 0.2 ***************** ***** 0.0 ------------------------ Multilevel TCGAACCCGGGACCTCCCGATTAC consensus TGCT TT CTAT G A sequence A A T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCSVKGAYCTYMNGRTTAH MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------ chrIX:210463-210919 - 59 2.01e-10 TCTAGCGGGA TCGAACCGCTGATCCCCGCGTTAT TAGCACGGTG chrXIV:602138-602534 - 61 2.01e-10 TCTAGCGGGA TCGAACCGCTGATCCCCGCGTTAT TAGCACGGTG chrXVI:819303-819780 - 73 2.01e-10 GGGA TCGAACCGCTGATCCCCGCGTTAT TAGCACGGTG chrXIV:569721-570116 + 14 2.01e-10 TCTAGCGGGA TCGAACCGCTGATCCCCGCGTTAT TAGCACGGTG chrXII:734625-735044 - 53 2.01e-10 TCTAGCGGGA TCGAACCGCTGATCCCCGCGTTAT TAGCACGGTG chrIX:183261-183712 + 19 2.01e-10 TCTAGCGGGA TCGAACCGCTGATCCCCGCGTTAT TAGCACGGTG chrIII:168128-168570 + 17 2.72e-10 CTACCCGGAT TCGAACCGGGGTTGTCCGGATCAA AACCGAAAGT chrVIII:134106-134572 - 65 2.72e-10 CTACCCGGAT TCGAACCGGGGTTGTCCGGATCAA AACCGAAAGT chrIV:802559-803021 + 6 2.72e-10 CGGAT TCGAACCGGGGTTGTCCGGATCAA AACCGAAAGT chrV:250084-250566 - 44 2.72e-10 CTACCCGGAT TCGAACCGGGGTTGTCCGGATCAA AACCGAAAGT chrIV:644982-645426 + 14 2.72e-10 CTACCCGGAT TCGAACCGGGGTTGTCCGGATCAA AACCGAAAGT chrVII:185530-185969 + 30 4.84e-10 TGTAGGGGGC TCGAACCCCTAACCTTATGATTAA GAGTCATACG chrXI:202779-203290 - 49 4.84e-10 TGTAGGGGGC TCGAACCCCTAACCTTATGATTAA GAGTCATACG chrVI:226506-226953 + 24 4.84e-10 TGTAGGGGGC TCGAACCCCTAACCTTATGATTAA GAGTCATACG chrV:135174-135727 + 40 4.84e-10 TGTAGGGGGC TCGAACCCCTAACCTTATGATTAA GAGTCATACG chrXVI:581862-582328 - 51 4.84e-10 TGTAGGGGGC TCGAACCCCTAACCTTATGATTAA GAGTCATACG chrVII:876177-876645 - 67 4.84e-10 TGTAGGGGGC TCGAACCCCTAACCTTATGATTAA GAGTCATACG chrV:130897-131367 + 15 5.57e-10 TTACCCGGAT TCGAACCGGGGTTGTTCGGATCAA AACCGAAAGT chrV:487156-487597 + 20 1.09e-09 ATACGGGGAG TCGAACCCCGGTCTCCACGGTGAA AGCGTGATGT chrV:176861-177371 - 66 1.09e-09 ATACGGGGAG TCGAACCCCGGTCTCCACGGTGAA AGCGTGATGT chrVII:541583-542173 - 55 1.09e-09 ATACGGGGAG TCGAACCCCGGTCTCCACGGTGAA AGCGTGATGT chrVII:401357-401805 + 11 1.09e-09 ATACGGGGAG TCGAACCCCGGTCTCCACGGTGAA AGCGTGATGT chrXI:140777-141363 + 13 1.09e-09 ATACGGGGAG TCGAACCCCGGTCTCCACGGTGAA AGCGTGATGT chrV:354674-355284 - 38 1.09e-09 ATACGGGGAG TCGAACCCCGGTCTCCACGGTGAA AGCGTGATGT chrVII:328359-328909 - 32 1.09e-09 ATACGGGGAG TCGAACCCCGGTCTCCACGGTGAA AGCGTGATGT chrX:374226-374326 + 66 1.24e-09 ACGATGGGGG TCGAACCCATAATCTTCTGATTAG AAGTCAGACG chrV:138441-138989 - 34 1.24e-09 ACGATGGGGG TCGAACCCATAATCTTCTGATTAG AAGTCAGACG chrII:405657-406201 - 32 1.24e-09 ACGATGGGGG TCGAACCCATAATCTTCTGATTAG AAGTCAGACG chrVII:405277-405744 - 43 1.24e-09 ACGATGGGGG TCGAACCCATAATCTTCTGATTAG AAGTCAGACG chrXI:162261-162758 + 43 1.24e-09 ACGATGGGGG TCGAACCCATAATCTTCTGATTAG AAGTCAGACG chrX:422685-422785 - 51 2.63e-09 CAGGGGAGGT TCGAACTCTCGACCTTCAGATTAT GAGACTGACG chrX:390880-390980 + 14 2.63e-09 CAGGGGAGGT TCGAACTCTCGACCTTCAGATTAT GAGACTGACG chrIV:1175616-1176103 - 54 2.63e-09 CAGGGGAGGT TCGAACTCTCGACCTTCAGATTAT GAGACTGACG chrX:354047-354147 - 67 2.63e-09 CGGGGGCGAG TCGAACGCCCGATCTCAAGATTTC GTAGTGGTAA chrX:542763-542863 + 5 2.63e-09 CGAG TCGAACGCCCGATCTCAAGATTTC GTAGTGATAA chrVI:210426-210910 + 16 2.63e-09 CGGGGGCGAG TCGAACGCCCGATCTCAAGATTTC GTAGTGGTAA chrXV:976182-976702 - 63 2.63e-09 CAGGGGAGGT TCGAACTCTCGACCTTCAGATTAT GAGACTGACG chrXIII:168572-169079 - 70 2.63e-09 GGGCGAG TCGAACGCCCGATCTCAAGATTTC GTAGTGGTAA chrXIII:837717-838195 - 72 2.63e-09 GCGAG TCGAACGCCCGATCTCAAGATTTC GTAGTGGTAA chrIV:946103-946616 - 53 2.63e-09 CGGGGGCGAG TCGAACGCCCGATCTCAAGATTTC GTAGTGATAA chrIII:123388-123833 + 32 2.63e-09 GAGCCGGGAC TCGAACCCGGGACCTCCCGCACCC TAAGCGAGAA chrVI:157734-158208 + 10 2.96e-09 TTCTGTGGA TCGAACACAGGACCTCCAGATAAC TTGACCGAAG chrXVI:622351-622849 + 5 2.96e-09 TGGA TCGAACACAGGACCTCCAGATAAC TTGACCGAAG chrXV:853997-854456 + 26 4.71e-09 GCAACCGGAA TCGAACCGATGACCTCTTCCTTGC AAGGGAAGCG chrX:58925-59025 + 14 4.71e-09 CCAATCGGAT TTGAACCGATGATCTCCACATTAC TAGTGTGGCG chrXIII:808053-808541 + 14 4.71e-09 CCACCCGGAT TCGAACTGGGGTTGTTCGGATCAG AACCGAAAGT chrXIV:560433-561007 + 38 4.71e-09 CCAATCGGAT TTGAACCGATGATCTCCACATTAC TAGTGTGGCG chrIII:295277-295738 - 61 4.71e-09 CCAATCGGAT TTGAACCGATGATCTCCACATTAC TAGTGTGGCG chrXI:379481-379925 - 62 1.12e-08 TCGCCCAGGA TCGAACTGGGGACGTTCTGCGTGT TAAGCAGATG chrX:378146-378246 - 73 1.12e-08 AGGA TCGAACTGGGGACGTTCTGCGTGT TAAGCAGATG chrXIII:420401-420888 + 9 1.12e-08 GCCCAGGA TCGAACTGGGGACGTTCTGCGTGT TAAGCAGATG chrXIII:372282-372719 + 10 1.12e-08 CGCCCAGGA TCGAACTGGGGACGTTCTGCGTGT TAAGCAGATG chrV:469248-469708 - 64 1.12e-08 TCGCCCAGGA TCGAACTGGGGACGTTCTGCGTGT TAAGCAGATG chrXII:687632-688150 + 33 1.12e-08 TCGCCCAGGA TCGAACTGGGGACGTTCTGCGTGT TAAGCAGATG chrIV:488528-489101 + 48 1.12e-08 CAACCGAGGT TCGAACTCGGGATCTTCGCCGTGT AAAGGCGACG chrXIII:183743-184161 + 11 1.25e-08 AAGCCCGGAA TCGAACCGGGGGCCCAACGATGGC AACGTTGGAT chrVII:845441-845899 - 61 1.25e-08 AAGCCCGGAA TCGAACCGGGGGCCCAACGATGGC AACGTTGGAT chrIV:1095145-1095659 + 33 1.38e-08 ACTCTGTGGA TCGAACACAGGACCTCCAGATATC TTGACCAAAG chrX:233706-233806 - 64 1.87e-08 CCGCCAGGAC TCGAACCTGGAATCTCCTGGTTCG TAGCCAGACG chrIV:1075296-1075736 + 21 3.02e-08 CAACCGAGGA TCGAACTCGGGACCTTTGCCGTGT GAAGGCAACG chrXV:438439-438960 - 51 3.31e-08 CATAGGGGGC TCGAACCCCTGACATTTCGGTATC CTTGCTTAAG chrXI:578767-579254 - 62 3.31e-08 CATAGGGGGC TCGAACCCCTGACATTTCGGTATC CTTGCTTAAG chrXVI:768971-769510 + 32 3.31e-08 CATAGGGGGC TCGAACCCCTGACATTTCGGTATC CTTGCTTAAG chrXVI:338702-339107 + 9 4.35e-08 GCTCGGTT TCGATCCGAGGACATCAGGGTTAT GAGCCCTGCG chrX:517649-517749 + 14 4.35e-08 CCGCTCGGTT TCGATCCGAGGACATCAGGGTTAT GAGCCCTGCG chrXII:975839-976239 + 9 5.20e-08 AGTGAGGG TTGAACTCACGATCTTGCGATTAA CAGTCGCACG chrXI:74392-74886 - 70 5.20e-08 GTGAGGG TTGAACTCACGATCTTGCGATTAA CAGTCGCACG chrVI:137292-137775 + 18 5.20e-08 CCAGTGAGGG TTGAACTCACGATCTTGCGATTAA CAGTCGCACG chrXV:110777-111256 + 11 1.20e-07 GGTACGAGAA TCGAACCCGTGTCCCCACCTTGGA AGGGTGGGAT chrXVI:55902-56541 + 13 1.52e-07 CGGACAGGAA TTGAACCTGCAACCCTTCGATTGC AATCTTATTC chrXVI:744084-744555 - 48 1.90e-07 CCTGTCAGAA TTGAACTAACGACCTTTGCATTAC AAGTGCAACG chrIV:619757-620237 + 37 2.05e-07 CCGCCAGGAC TTGAACCTGGAATCTTCTGGTTCG TAGCCAGACG chrXII:374153-374670 - 28 2.05e-07 CCGCCAGGAC TTGAACCTGGAATCTTCTGGTTCG TAGCCAGACG chrV:207145-207621 - 57 3.37e-07 TCTCCTAGAA TCGAACCAGGGTTTCATCGGCCAC AACGATGTGT chrVII:319581-320075 - 36 3.37e-07 TCTCCTAGAA TCGAACCAGGGTTTCATCGGCCAC AACGATGTGT chrXI:313232-313688 + 6 3.37e-07 TAGAA TCGAACCAGGGTTTCATCGGCCAC AACGATGTGT chrXIII:362835-363319 - 70 3.37e-07 CCTAGAA TCGAACCAGGGTTTCATCGGCCAC AACGATGTGT chrVII:110432-110920 + 14 3.37e-07 TCTCCTAGAA TCGAACCAGGGTTTCATCGGCCAC AACGATGTGT chrXII:656769-657189 + 20 3.37e-07 GAGTCCGGAA TCGAACCGGAGACCTCTCCCATGC TAAGGGAGCG chrVII:706906-707411 + 15 3.87e-07 GCACTCAGGA TCGAACTAAGGACCAACAGATTTG CAATCTGCTG chrXVI:435703-436203 + 5 3.87e-07 AGGA TCGAACTAAGGACCAACAGATTTG CAATCTGCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCSVKGAYCTYMNGRTTAH MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIX:210463-210919 2e-10 58_[-2]_18 chrXIV:602138-602534 2e-10 60_[-2]_16 chrXVI:819303-819780 2e-10 72_[-2]_4 chrXIV:569721-570116 2e-10 13_[+2]_63 chrXII:734625-735044 2e-10 52_[-2]_24 chrIX:183261-183712 2e-10 18_[+2]_58 chrIII:168128-168570 2.7e-10 16_[+2]_60 chrVIII:134106-134572 2.7e-10 64_[-2]_12 chrIV:802559-803021 2.7e-10 5_[+2]_71 chrV:250084-250566 2.7e-10 43_[-2]_33 chrIV:644982-645426 2.7e-10 13_[+2]_63 chrVII:185530-185969 4.8e-10 29_[+2]_47 chrXI:202779-203290 4.8e-10 48_[-2]_28 chrVI:226506-226953 4.8e-10 23_[+2]_53 chrV:135174-135727 4.8e-10 39_[+2]_37 chrXVI:581862-582328 4.8e-10 50_[-2]_26 chrVII:876177-876645 4.8e-10 66_[-2]_10 chrV:130897-131367 5.6e-10 14_[+2]_62 chrV:487156-487597 1.1e-09 19_[+2]_57 chrV:176861-177371 1.1e-09 65_[-2]_11 chrVII:541583-542173 1.1e-09 54_[-2]_22 chrVII:401357-401805 1.1e-09 10_[+2]_66 chrXI:140777-141363 1.1e-09 12_[+2]_64 chrV:354674-355284 1.1e-09 37_[-2]_39 chrVII:328359-328909 1.1e-09 31_[-2]_45 chrX:374226-374326 1.2e-09 65_[+2]_11 chrV:138441-138989 1.2e-09 33_[-2]_43 chrII:405657-406201 1.2e-09 31_[-2]_45 chrVII:405277-405744 1.2e-09 42_[-2]_34 chrXI:162261-162758 1.2e-09 42_[+2]_34 chrX:422685-422785 2.6e-09 50_[-2]_26 chrX:390880-390980 2.6e-09 13_[+2]_63 chrIV:1175616-1176103 2.6e-09 53_[-2]_23 chrX:354047-354147 2.6e-09 66_[-2]_10 chrX:542763-542863 2.6e-09 4_[+2]_72 chrVI:210426-210910 2.6e-09 15_[+2]_61 chrXV:976182-976702 2.6e-09 62_[-2]_14 chrXIII:168572-169079 2.6e-09 69_[-2]_7 chrXIII:837717-838195 2.6e-09 71_[-2]_5 chrIV:946103-946616 2.6e-09 52_[-2]_24 chrIII:123388-123833 2.6e-09 31_[+2]_45 chrVI:157734-158208 3e-09 9_[+2]_67 chrXVI:622351-622849 3e-09 4_[+2]_72 chrXV:853997-854456 4.7e-09 25_[+2]_51 chrX:58925-59025 4.7e-09 13_[+2]_63 chrXIII:808053-808541 4.7e-09 13_[+2]_63 chrXIV:560433-561007 4.7e-09 37_[+2]_39 chrIII:295277-295738 4.7e-09 60_[-2]_16 chrXI:379481-379925 1.1e-08 61_[-2]_15 chrX:378146-378246 1.1e-08 72_[-2]_4 chrXIII:420401-420888 1.1e-08 8_[+2]_68 chrXIII:372282-372719 1.1e-08 9_[+2]_67 chrV:469248-469708 1.1e-08 63_[-2]_13 chrXII:687632-688150 1.1e-08 32_[+2]_44 chrIV:488528-489101 1.1e-08 47_[+2]_29 chrXIII:183743-184161 1.2e-08 10_[+2]_66 chrVII:845441-845899 1.2e-08 60_[-2]_16 chrIV:1095145-1095659 1.4e-08 32_[+2]_44 chrX:233706-233806 1.9e-08 63_[-2]_13 chrIV:1075296-1075736 3e-08 20_[+2]_56 chrXV:438439-438960 3.3e-08 50_[-2]_26 chrXI:578767-579254 3.3e-08 61_[-2]_15 chrXVI:768971-769510 3.3e-08 31_[+2]_45 chrXVI:338702-339107 4.4e-08 8_[+2]_68 chrX:517649-517749 4.4e-08 13_[+2]_63 chrXII:975839-976239 5.2e-08 8_[+2]_68 chrXI:74392-74886 5.2e-08 69_[-2]_7 chrVI:137292-137775 5.2e-08 17_[+2]_59 chrXV:110777-111256 1.2e-07 10_[+2]_66 chrXVI:55902-56541 1.5e-07 12_[+2]_64 chrXVI:744084-744555 1.9e-07 47_[-2]_29 chrIV:619757-620237 2e-07 36_[+2]_40 chrXII:374153-374670 2e-07 27_[-2]_49 chrV:207145-207621 3.4e-07 56_[-2]_20 chrVII:319581-320075 3.4e-07 35_[-2]_41 chrXI:313232-313688 3.4e-07 5_[+2]_71 chrXIII:362835-363319 3.4e-07 69_[-2]_7 chrVII:110432-110920 3.4e-07 13_[+2]_63 chrXII:656769-657189 3.4e-07 19_[+2]_57 chrVII:706906-707411 3.9e-07 14_[+2]_62 chrXVI:435703-436203 3.9e-07 4_[+2]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCSVKGAYCTYMNGRTTAH MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCGAACCSVKGAYCTYMNGRTTAH width=24 seqs=81 chrIX:210463-210919 ( 59) TCGAACCGCTGATCCCCGCGTTAT 1 chrXIV:602138-602534 ( 61) TCGAACCGCTGATCCCCGCGTTAT 1 chrXVI:819303-819780 ( 73) TCGAACCGCTGATCCCCGCGTTAT 1 chrXIV:569721-570116 ( 14) TCGAACCGCTGATCCCCGCGTTAT 1 chrXII:734625-735044 ( 53) TCGAACCGCTGATCCCCGCGTTAT 1 chrIX:183261-183712 ( 19) TCGAACCGCTGATCCCCGCGTTAT 1 chrIII:168128-168570 ( 17) TCGAACCGGGGTTGTCCGGATCAA 1 chrVIII:134106-134572 ( 65) TCGAACCGGGGTTGTCCGGATCAA 1 chrIV:802559-803021 ( 6) TCGAACCGGGGTTGTCCGGATCAA 1 chrV:250084-250566 ( 44) TCGAACCGGGGTTGTCCGGATCAA 1 chrIV:644982-645426 ( 14) TCGAACCGGGGTTGTCCGGATCAA 1 chrVII:185530-185969 ( 30) TCGAACCCCTAACCTTATGATTAA 1 chrXI:202779-203290 ( 49) TCGAACCCCTAACCTTATGATTAA 1 chrVI:226506-226953 ( 24) TCGAACCCCTAACCTTATGATTAA 1 chrV:135174-135727 ( 40) TCGAACCCCTAACCTTATGATTAA 1 chrXVI:581862-582328 ( 51) TCGAACCCCTAACCTTATGATTAA 1 chrVII:876177-876645 ( 67) TCGAACCCCTAACCTTATGATTAA 1 chrV:130897-131367 ( 15) TCGAACCGGGGTTGTTCGGATCAA 1 chrV:487156-487597 ( 20) TCGAACCCCGGTCTCCACGGTGAA 1 chrV:176861-177371 ( 66) TCGAACCCCGGTCTCCACGGTGAA 1 chrVII:541583-542173 ( 55) TCGAACCCCGGTCTCCACGGTGAA 1 chrVII:401357-401805 ( 11) TCGAACCCCGGTCTCCACGGTGAA 1 chrXI:140777-141363 ( 13) TCGAACCCCGGTCTCCACGGTGAA 1 chrV:354674-355284 ( 38) TCGAACCCCGGTCTCCACGGTGAA 1 chrVII:328359-328909 ( 32) TCGAACCCCGGTCTCCACGGTGAA 1 chrX:374226-374326 ( 66) TCGAACCCATAATCTTCTGATTAG 1 chrV:138441-138989 ( 34) TCGAACCCATAATCTTCTGATTAG 1 chrII:405657-406201 ( 32) TCGAACCCATAATCTTCTGATTAG 1 chrVII:405277-405744 ( 43) TCGAACCCATAATCTTCTGATTAG 1 chrXI:162261-162758 ( 43) TCGAACCCATAATCTTCTGATTAG 1 chrX:422685-422785 ( 51) TCGAACTCTCGACCTTCAGATTAT 1 chrX:390880-390980 ( 14) TCGAACTCTCGACCTTCAGATTAT 1 chrIV:1175616-1176103 ( 54) TCGAACTCTCGACCTTCAGATTAT 1 chrX:354047-354147 ( 67) TCGAACGCCCGATCTCAAGATTTC 1 chrX:542763-542863 ( 5) TCGAACGCCCGATCTCAAGATTTC 1 chrVI:210426-210910 ( 16) TCGAACGCCCGATCTCAAGATTTC 1 chrXV:976182-976702 ( 63) TCGAACTCTCGACCTTCAGATTAT 1 chrXIII:168572-169079 ( 70) TCGAACGCCCGATCTCAAGATTTC 1 chrXIII:837717-838195 ( 72) TCGAACGCCCGATCTCAAGATTTC 1 chrIV:946103-946616 ( 53) TCGAACGCCCGATCTCAAGATTTC 1 chrIII:123388-123833 ( 32) TCGAACCCGGGACCTCCCGCACCC 1 chrVI:157734-158208 ( 10) TCGAACACAGGACCTCCAGATAAC 1 chrXVI:622351-622849 ( 5) TCGAACACAGGACCTCCAGATAAC 1 chrXV:853997-854456 ( 26) TCGAACCGATGACCTCTTCCTTGC 1 chrX:58925-59025 ( 14) TTGAACCGATGATCTCCACATTAC 1 chrXIII:808053-808541 ( 14) TCGAACTGGGGTTGTTCGGATCAG 1 chrXIV:560433-561007 ( 38) TTGAACCGATGATCTCCACATTAC 1 chrIII:295277-295738 ( 61) TTGAACCGATGATCTCCACATTAC 1 chrXI:379481-379925 ( 62) TCGAACTGGGGACGTTCTGCGTGT 1 chrX:378146-378246 ( 73) TCGAACTGGGGACGTTCTGCGTGT 1 chrXIII:420401-420888 ( 9) TCGAACTGGGGACGTTCTGCGTGT 1 chrXIII:372282-372719 ( 10) TCGAACTGGGGACGTTCTGCGTGT 1 chrV:469248-469708 ( 64) TCGAACTGGGGACGTTCTGCGTGT 1 chrXII:687632-688150 ( 33) TCGAACTGGGGACGTTCTGCGTGT 1 chrIV:488528-489101 ( 48) TCGAACTCGGGATCTTCGCCGTGT 1 chrXIII:183743-184161 ( 11) TCGAACCGGGGGCCCAACGATGGC 1 chrVII:845441-845899 ( 61) TCGAACCGGGGGCCCAACGATGGC 1 chrIV:1095145-1095659 ( 33) TCGAACACAGGACCTCCAGATATC 1 chrX:233706-233806 ( 64) TCGAACCTGGAATCTCCTGGTTCG 1 chrIV:1075296-1075736 ( 21) TCGAACTCGGGACCTTTGCCGTGT 1 chrXV:438439-438960 ( 51) TCGAACCCCTGACATTTCGGTATC 1 chrXI:578767-579254 ( 62) TCGAACCCCTGACATTTCGGTATC 1 chrXVI:768971-769510 ( 32) TCGAACCCCTGACATTTCGGTATC 1 chrXVI:338702-339107 ( 9) TCGATCCGAGGACATCAGGGTTAT 1 chrX:517649-517749 ( 14) TCGATCCGAGGACATCAGGGTTAT 1 chrXII:975839-976239 ( 9) TTGAACTCACGATCTTGCGATTAA 1 chrXI:74392-74886 ( 70) TTGAACTCACGATCTTGCGATTAA 1 chrVI:137292-137775 ( 18) TTGAACTCACGATCTTGCGATTAA 1 chrXV:110777-111256 ( 11) TCGAACCCGTGTCCCCACCTTGGA 1 chrXVI:55902-56541 ( 13) TTGAACCTGCAACCCTTCGATTGC 1 chrXVI:744084-744555 ( 48) TTGAACTAACGACCTTTGCATTAC 1 chrIV:619757-620237 ( 37) TTGAACCTGGAATCTTCTGGTTCG 1 chrXII:374153-374670 ( 28) TTGAACCTGGAATCTTCTGGTTCG 1 chrV:207145-207621 ( 57) TCGAACCAGGGTTTCATCGGCCAC 1 chrVII:319581-320075 ( 36) TCGAACCAGGGTTTCATCGGCCAC 1 chrXI:313232-313688 ( 6) TCGAACCAGGGTTTCATCGGCCAC 1 chrXIII:362835-363319 ( 70) TCGAACCAGGGTTTCATCGGCCAC 1 chrVII:110432-110920 ( 14) TCGAACCAGGGTTTCATCGGCCAC 1 chrXII:656769-657189 ( 20) TCGAACCGGAGACCTCTCCCATGC 1 chrVII:706906-707411 ( 15) TCGAACTAAGGACCAACAGATTTG 1 chrXVI:435703-436203 ( 5) TCGAACTAAGGACCAACAGATTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCSVKGAYCTYMNGRTTAH MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 24 n= 42581 bayes= 8.48394 E= 6.2e-246 -1298 -1298 -1298 169 -1298 221 -1298 -133 -1298 -1298 240 -1298 169 -1298 -1298 -1298 165 -1298 -1298 -365 -1298 240 -1298 -1298 -307 179 -135 -41 -165 142 87 -265 -33 87 92 -265 -465 -3 138 -1 -75 -1298 211 -1298 123 -1298 -294 -33 -1298 145 -1298 63 -233 173 -24 -107 -365 52 -1298 118 -148 127 -1298 48 -7 142 -235 -95 -48 65 23 -26 -1298 -3 211 -1298 77 -48 76 -465 -365 -162 -94 139 -207 -24 -62 105 102 -194 -13 -107 -13 82 -48 -33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCSVKGAYCTYMNGRTTAH MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 24 nsites= 81 E= 6.2e-246 0.000000 0.000000 0.000000 1.000000 0.000000 0.876543 0.000000 0.123457 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.975309 0.000000 0.000000 0.024691 0.000000 1.000000 0.000000 0.000000 0.037037 0.654321 0.074074 0.234568 0.098765 0.506173 0.345679 0.049383 0.246914 0.345679 0.358025 0.049383 0.012346 0.185185 0.493827 0.308642 0.185185 0.000000 0.814815 0.000000 0.728395 0.000000 0.024691 0.246914 0.000000 0.518519 0.000000 0.481481 0.061728 0.629630 0.160494 0.148148 0.024691 0.271605 0.000000 0.703704 0.111111 0.456790 0.000000 0.432099 0.296296 0.506173 0.037037 0.160494 0.222222 0.296296 0.222222 0.259259 0.000000 0.185185 0.814815 0.000000 0.530864 0.135802 0.320988 0.012346 0.024691 0.061728 0.098765 0.814815 0.074074 0.160494 0.123457 0.641975 0.629630 0.049383 0.172840 0.148148 0.283951 0.333333 0.135802 0.246914 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCSVKGAYCTYMNGRTTAH MEME-2 regular expression -------------------------------------------------------------------------------- TCGAAC[CT][CG][GCA][GT]G[AT][CT]C[TC][CT][CA][CTAG]G[AG]TTA[CAT] -------------------------------------------------------------------------------- Time 567.74 secs. ******************************************************************************** ******************************************************************************** MOTIF GSBSNTRTRGTGTAGTGGT MEME-3 width = 19 sites = 86 llr = 1070 E-value = 3.6e-119 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSBSNTRTRGTGTAGTGGT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1112324:5::1:82:::1 pos.-specific C :43432::::212::1::2 probability G 7344315:5a16:152aa: matrix T 2221251a::828:26::7 bits 2.4 * ** 2.2 * ** 1.9 * ** 1.7 * ** Relative 1.4 * * ** Entropy 1.2 * *** * ** (18.0 bits) 1.0 * *** ** ** 0.7 * ******** *** 0.5 ** * ************* 0.2 ******************* 0.0 ------------------- Multilevel GCGCGTGTGGTGTAGTGGT consensus TGCGA A A T AG sequence T C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBSNTRTRGTGTAGTGGT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------- chrXV:464222-464718 + 30 3.77e-10 AAGTTAACAA GGGCGTGTGGTCTAGTGGT ATGATTCTCG chrVIII:388724-389216 - 57 3.77e-10 ACAGATACAT GGGCGTGTGGTCTAGTGGT ATGATTCTCG chrXIII:195876-196462 - 33 3.77e-10 AAGTTCACAA GGGCGTGTGGTCTAGTGGT ATGATTCTCG chrXII:92318-92828 + 25 3.77e-10 AAGTTAATAA GGGCGTGTGGTCTAGTGGT ATGATTCTCG chrXV:300847-301414 + 17 3.77e-10 AGAAAAGATC GGGCGTGTGGTCTAGTGGT ATGATTCTCG chrIII:168128-168570 - 55 2.74e-09 AAGAAGTCCT GGTCCTATAGTGTAGTGGT TATCACTTTC chrIV:520740-521203 + 51 2.74e-09 TCCATTTTAG GGTCCTATAGTGTAGTGGT TATCACTTTC chrXII:448474-448983 - 25 2.74e-09 AAGAAGTTCC GGTCCTATAGTGTAGTGGT TATCACTTTC chrVIII:134106-134572 + 32 2.74e-09 AGTAAGTTCC GGTCCTATAGTGTAGTGGT TATCACTTTC chrIV:802559-803021 - 44 2.74e-09 ATGAATTGTC GGTCCTATAGTGTAGTGGT TATCACTTTC chrV:250084-250566 + 11 2.74e-09 CAGTTGTACT GGTCCTATAGTGTAGTGGT TATCACTTTC chrXIII:808053-808541 - 52 2.74e-09 AGAAGAAAAA GGTCCTATAGTGTAGTGGT TATCACTTTC chrIV:644982-645426 - 52 2.74e-09 CAGTTGTTAC GGTCCTATAGTGTAGTGGT TATCACTTTC chrVI:162028-162436 + 46 7.00e-09 AAGAAAACAA GCGCAAGTGGTTTAGTGGT AAAATCCAAC chrVII:930791-931264 - 28 7.00e-09 TAATCAGTAA GCGCAAGTGGTTTAGTGGT AAAATCCAAC chrXVI:860155-860596 + 54 7.00e-09 TAAATAACAA GCGCAAGTGGTTTAGTGGT AAAATCCAAC chrXVI:572002-572544 + 46 7.00e-09 ACAATACTTC GCGCAAGTGGTTTAGTGGT AAAATCCAAC chrXIII:183743-184161 - 48 7.00e-09 AATAAAGATC GCGCAAGTGGTTTAGTGGT AAAATCCAAC chrIII:142556-143000 - 25 7.00e-09 AAGATTACTA GCGCAAGTGGTTTAGTGGT AAAATCCAAC chrVII:845441-845899 + 29 7.00e-09 TAAATAACAA GCGCAAGTGGTTTAGTGGT AAAATCCAAC chrXV:110777-111256 - 49 1.17e-08 CAATTAACCC GGGCGGTTAGTGTAGTGGT TATCATCCCA chrVII:706906-707411 - 53 1.93e-08 AGAAAATCAA GCTCGTATGGCGCAGTGGT AGCGCAGCAG chrXVI:435703-436203 - 43 1.93e-08 TACAACAAAA GCTCGTATGGCGCAGTGGT AGCGCAGCAG chrXV:980466-980964 + 18 2.64e-08 CAAATTGTAT GGGCGTGTGGTCTAGTGGA ATGATTCTCG chrXIV:6460-6882 - 8 5.57e-08 GTGTGGGTGT GTGGGTGTGGTGTGTGGGT GTGGGTG chrIII:30-562 - 41 5.57e-08 GTGTGGGTGT GTGGGTGTGGTGTGTGGGT GTGGTGTGGG chrXIV:631694-632122 - 41 5.57e-08 AACTTCTACC GGGCGTGTGGTCTAGAGGT ATGATTCTCG chrVI:4400-4996 - 73 5.57e-08 GGGTGTGGT GTGGGTGTGGTGTGTGGGT GTGGGTGTGT chrXIII:5247-5859 - 42 5.57e-08 GTGTGTGGGT GTGGGTGTGGTGTGTGGGT GTGGGTGTAT chrIII:123388-123833 - 70 5.57e-08 TTTCAAAGGA GGGCGTGTGGTCTAGAGGT ATGATTCTCG chrVII:405277-405744 + 10 9.71e-08 CAAACAGTA GCTCGCGTGGCGTAATGGC AACGCGTCTG chrIV:1256890-1257311 - 11 1.86e-07 GATCTTCTTA GCGAAAGTGGTTCAGTGGT TAGAATTCAT chrII:326643-327116 - 18 2.11e-07 TCGAGTTCCG GGTCCAATGGTCCAGTGGT TCAAGACGTC chrV:130897-131367 - 53 2.38e-07 ATAATTAAGA GGTTTTATAGTGTAGTGGT TATCACTTTC chrXII:1064835-1065377 + 29 6.65e-07 TGTGGTGTGT GTGTGTGTGGTGTGTGGGT GTGGTGGGTG chrXII:489256-489585 + 49 6.65e-07 GTAAGAGCCT GACCGAGTAGTGTAGTGGG TGACCATACG chrV:6129-6578 - 48 9.13e-07 ACAAGTGAAG GTGAGCATGGTGTGTGGGT GTGGGTGTGG chrV:487156-487597 - 58 1.12e-06 ATGAATTTAA TCCGATATAGTGTAACGGC TATCACATCA chrV:176861-177371 + 33 1.12e-06 CCTACTTTGA TCCGATATAGTGTAACGGC TATCACATCA chrVII:541583-542173 + 22 1.12e-06 CAGATTACCA TCCGATATAGTGTAACGGC TATCACATCA chrIV:1075296-1075736 - 60 1.12e-06 CCGTAATATT GTTCCAATAGTGTAGCGGC TATCACGTTG chrVII:401357-401805 - 49 1.12e-06 TTAATTTGTT TCCGATATAGTGTAACGGC TATCACATCA chrXI:140777-141363 - 51 1.12e-06 TCCTTTGTAA TCCGATATAGTGTAACGGC TATCACATCA chrIII:82321-82787 - 11 1.12e-06 TAATTTGTTA TCCGATATAGTGTAACGGC TATCACATCA chrXIII:290567-291018 + 59 1.12e-06 TGAAATATAA TCCGATATAGTGTAACGGC TATCACATCA chrV:354674-355284 + 5 1.12e-06 GTAA TCCGATATAGTGTAACGGC TATCACATCA chrXVI:210011-210508 - 36 1.12e-06 CCAATTATTG TCCGATATAGTGTAACGGC TATCACATCA chrX:374226-374326 - 22 1.65e-06 CTTTGTTTCT TCCGTGATAGTTTAATGGT CAGAATGGGC chrX:204494-204594 + 40 1.65e-06 AACATAAAAA TCCGTGATAGTTTAATGGT CAGAATGGGC chrVII:544415-544909 - 18 1.65e-06 AGATATTTCT TCCGTGATAGTTTAATGGT CAGAATGGGC chrXV:571705-572193 + 59 1.65e-06 ACAATTAAAA TCCGTGATAGTTTAATGGT CAGAATGGGC chrII:405657-406201 + 81 1.65e-06 CTTTGTTTCT TCCGTGATAGTTTAATGGT C chrIV:976476-976824 - 65 2.00e-06 TCATTAGTCA GAAATTGTGGTGTATGGGT ACTATGCACA chrVII:26-204 - 29 2.00e-06 GGTAACGAGT GGGGAGGTAGGGTAATGGA GGGTAAGTTG chrVIII:466740-467224 + 58 2.19e-06 TGTATTTTTA GCCTCCTTAGCTTAGTGGT AGAGCGTTGC chrXVI:744084-744555 + 15 2.19e-06 CAGTGTAAAA GCCTCCTTAGCTTAGTGGT AGAGCGTTGC chrV:207145-207621 + 24 2.40e-06 ATATAAGTTC GCCATCTTAGTATAGTGGT TAGTACACAT chrVII:319581-320075 + 3 2.40e-06 TA GCCATCTTAGTATAGTGGT TAGTACACAT chrXI:313232-313688 - 44 2.40e-06 ACAGTTGTTT GCCATCTTAGTATAGTGGT TAGTACACAT chrXIII:362835-363319 + 37 2.40e-06 ATCCAAGTTT GCCATCTTAGTATAGTGGT TAGTACACAT chrVII:110432-110920 - 52 2.40e-06 ATAATTACCT GCCATCTTAGTATAGTGGT TAGTACACAT chrVIII:556631-557264 + 4 2.40e-06 GGT GTGGGTGTGGTGTGGGTGT GGGTGTGTGT chrXV:709972-710397 + 67 2.63e-06 AAGAATTAGC AGCGCCGTGGCGCAGTGGA AGCGCGCAGG chrXVI:338702-339107 - 47 2.63e-06 ATGATTTAGC AGCGCCGTGGCGCAGTGGA AGCGCGCAGG chrV:99904-100373 + 45 2.63e-06 AAGTTGGCTA AGCGCCGTGGCGCAGTGGA AGCGCGCAGG chrX:517649-517749 - 52 2.63e-06 ATAAAAGTTA AGCGCCGTGGCGCAGTGGA AGCGCGCAGG chrXI:326293-327645 - 55 2.63e-06 CAAGAGAATG GCCGCTATGGACCAATGGT TAGAAATGGA chrXIV:783832-784192 + 67 2.87e-06 TTAGGGTAGT GTTAGGGTAGTGTGTGGGT GTGGTGTGTG chrXIII:302740-303118 + 78 5.63e-06 TAAAAAATCC AGGGGTGTGGGGTGTGGGC GCCC chrXI:431287-431672 - 67 6.60e-06 ATGTCAAGAT GTAAAAATAGTGTATGGGT GTATTTGCGC chrVII:726412-726784 - 41 6.60e-06 TAGGGTATGG GTGTATATAGGGTATGGGT GTACAGTTAA chrVII:287180-287692 - 51 7.14e-06 ATTTCAAGAT GAAGCGGTGGCTCAATGGT AGAGCTTTCG chrX:415811-415911 - 14 7.14e-06 AACAAAAGTT GAAGCGGTGGCTCAATGGT AGAGCTTTCG chrXI:302685-303199 + 26 7.14e-06 ATTCCAAGAT GAAGCGGTGGCTCAATGGT AGAGCTTTCG chrX:617618-617718 + 81 8.32e-06 AACAAACAAT GGGAGTTTGGCCGAGTGGT T chrXVI:188605-188960 + 4 1.20e-05 GAA GGAGAACTGGTGTAGAGGT TTCCGGTCTT chrXII:673728-674276 + 67 1.20e-05 ACTGCTGTCA TAACGCGTGGTGTTGTGGT TTTGCTTAAT chrVIII:148934-149290 + 12 1.39e-05 TTTTCTTTAT AATCCAATGGTGCATGGGT GAAAATGTAT chrIV:835762-836233 - 6 1.39e-05 GCTGAGGTGT GCGGTTGCGGGGCGTGGGT GTGCG chrXVI:699922-700418 - 51 1.49e-05 GAAACATTTT GAAGCTATGGTGTGTGGGG GATCACTTGT chrXII:1028192-1028580 - 64 1.83e-05 TTATGACCCA TACATTTTGGTGCATGGGT GATATTTTGT chrII:165074-165476 - 34 2.38e-05 CGGCGAGTGC TCTAACGCGGTGTATGGGC TAGATTCGTA chrXIII:145870-146295 - 54 2.54e-05 CTATGGTGTA TGGTGTATGGTGTATGGAT GTACAAAAAT chrXV:27840-27960 + 59 2.88e-05 CAAAAAGGGT GTGACTGTAGATTGTGGGT TACTTGCTGT chrV:53516-53995 + 73 3.48e-05 TTTTAGACTG GTACGAATGGGATAATGGC ATAAGGTGG chrIV:358085-358431 + 33 4.42e-05 TTTGTTTCCT TGTCAGATAATGTATGGGT GGTGTGTACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBSNTRTRGTGTAGTGGT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:464222-464718 3.8e-10 29_[+3]_52 chrVIII:388724-389216 3.8e-10 56_[-3]_25 chrXIII:195876-196462 3.8e-10 32_[-3]_49 chrXII:92318-92828 3.8e-10 24_[+3]_57 chrXV:300847-301414 3.8e-10 16_[+3]_65 chrIII:168128-168570 2.7e-09 54_[-3]_27 chrIV:520740-521203 2.7e-09 50_[+3]_31 chrXII:448474-448983 2.7e-09 24_[-3]_57 chrVIII:134106-134572 2.7e-09 31_[+3]_50 chrIV:802559-803021 2.7e-09 43_[-3]_38 chrV:250084-250566 2.7e-09 10_[+3]_71 chrXIII:808053-808541 2.7e-09 51_[-3]_30 chrIV:644982-645426 2.7e-09 51_[-3]_30 chrVI:162028-162436 7e-09 45_[+3]_36 chrVII:930791-931264 7e-09 27_[-3]_54 chrXVI:860155-860596 7e-09 53_[+3]_28 chrXVI:572002-572544 7e-09 45_[+3]_36 chrXIII:183743-184161 7e-09 47_[-3]_34 chrIII:142556-143000 7e-09 24_[-3]_57 chrVII:845441-845899 7e-09 28_[+3]_53 chrXV:110777-111256 1.2e-08 48_[-3]_33 chrVII:706906-707411 1.9e-08 52_[-3]_29 chrXVI:435703-436203 1.9e-08 42_[-3]_39 chrXV:980466-980964 2.6e-08 17_[+3]_64 chrXIV:6460-6882 5.6e-08 7_[-3]_74 chrIII:30-562 5.6e-08 40_[-3]_41 chrXIV:631694-632122 5.6e-08 40_[-3]_41 chrVI:4400-4996 5.6e-08 72_[-3]_9 chrXIII:5247-5859 5.6e-08 41_[-3]_40 chrIII:123388-123833 5.6e-08 69_[-3]_12 chrVII:405277-405744 9.7e-08 9_[+3]_72 chrIV:1256890-1257311 1.9e-07 10_[-3]_71 chrII:326643-327116 2.1e-07 17_[-3]_64 chrV:130897-131367 2.4e-07 52_[-3]_29 chrXII:1064835-1065377 6.6e-07 28_[+3]_53 chrXII:489256-489585 6.6e-07 48_[+3]_33 chrV:6129-6578 9.1e-07 47_[-3]_34 chrV:487156-487597 1.1e-06 57_[-3]_24 chrV:176861-177371 1.1e-06 32_[+3]_49 chrVII:541583-542173 1.1e-06 21_[+3]_60 chrIV:1075296-1075736 1.1e-06 59_[-3]_22 chrVII:401357-401805 1.1e-06 48_[-3]_33 chrXI:140777-141363 1.1e-06 50_[-3]_31 chrIII:82321-82787 1.1e-06 10_[-3]_71 chrXIII:290567-291018 1.1e-06 58_[+3]_23 chrV:354674-355284 1.1e-06 4_[+3]_77 chrXVI:210011-210508 1.1e-06 35_[-3]_46 chrX:374226-374326 1.7e-06 21_[-3]_60 chrX:204494-204594 1.7e-06 39_[+3]_42 chrVII:544415-544909 1.7e-06 17_[-3]_64 chrXV:571705-572193 1.7e-06 58_[+3]_23 chrII:405657-406201 1.7e-06 80_[+3]_1 chrIV:976476-976824 2e-06 64_[-3]_17 chrVII:26-204 2e-06 28_[-3]_53 chrVIII:466740-467224 2.2e-06 57_[+3]_24 chrXVI:744084-744555 2.2e-06 14_[+3]_67 chrV:207145-207621 2.4e-06 23_[+3]_58 chrVII:319581-320075 2.4e-06 2_[+3]_79 chrXI:313232-313688 2.4e-06 43_[-3]_38 chrXIII:362835-363319 2.4e-06 36_[+3]_45 chrVII:110432-110920 2.4e-06 51_[-3]_30 chrVIII:556631-557264 2.4e-06 3_[+3]_78 chrXV:709972-710397 2.6e-06 66_[+3]_15 chrXVI:338702-339107 2.6e-06 46_[-3]_35 chrV:99904-100373 2.6e-06 44_[+3]_37 chrX:517649-517749 2.6e-06 51_[-3]_30 chrXI:326293-327645 2.6e-06 54_[-3]_27 chrXIV:783832-784192 2.9e-06 66_[+3]_15 chrXIII:302740-303118 5.6e-06 77_[+3]_4 chrXI:431287-431672 6.6e-06 66_[-3]_15 chrVII:726412-726784 6.6e-06 40_[-3]_41 chrVII:287180-287692 7.1e-06 50_[-3]_31 chrX:415811-415911 7.1e-06 13_[-3]_68 chrXI:302685-303199 7.1e-06 25_[+3]_56 chrX:617618-617718 8.3e-06 80_[+3]_1 chrXVI:188605-188960 1.2e-05 3_[+3]_78 chrXII:673728-674276 1.2e-05 66_[+3]_15 chrVIII:148934-149290 1.4e-05 11_[+3]_70 chrIV:835762-836233 1.4e-05 5_[-3]_76 chrXVI:699922-700418 1.5e-05 50_[-3]_31 chrXII:1028192-1028580 1.8e-05 63_[-3]_18 chrII:165074-165476 2.4e-05 33_[-3]_48 chrXIII:145870-146295 2.5e-05 53_[-3]_28 chrXV:27840-27960 2.9e-05 58_[+3]_23 chrV:53516-53995 3.5e-05 72_[+3]_9 chrIV:358085-358431 4.4e-05 32_[+3]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBSNTRTRGTGTAGTGGT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSBSNTRTRGTGTAGTGGT width=19 seqs=86 chrXV:464222-464718 ( 30) GGGCGTGTGGTCTAGTGGT 1 chrVIII:388724-389216 ( 57) GGGCGTGTGGTCTAGTGGT 1 chrXIII:195876-196462 ( 33) GGGCGTGTGGTCTAGTGGT 1 chrXII:92318-92828 ( 25) GGGCGTGTGGTCTAGTGGT 1 chrXV:300847-301414 ( 17) GGGCGTGTGGTCTAGTGGT 1 chrIII:168128-168570 ( 55) GGTCCTATAGTGTAGTGGT 1 chrIV:520740-521203 ( 51) GGTCCTATAGTGTAGTGGT 1 chrXII:448474-448983 ( 25) GGTCCTATAGTGTAGTGGT 1 chrVIII:134106-134572 ( 32) GGTCCTATAGTGTAGTGGT 1 chrIV:802559-803021 ( 44) GGTCCTATAGTGTAGTGGT 1 chrV:250084-250566 ( 11) GGTCCTATAGTGTAGTGGT 1 chrXIII:808053-808541 ( 52) GGTCCTATAGTGTAGTGGT 1 chrIV:644982-645426 ( 52) GGTCCTATAGTGTAGTGGT 1 chrVI:162028-162436 ( 46) GCGCAAGTGGTTTAGTGGT 1 chrVII:930791-931264 ( 28) GCGCAAGTGGTTTAGTGGT 1 chrXVI:860155-860596 ( 54) GCGCAAGTGGTTTAGTGGT 1 chrXVI:572002-572544 ( 46) GCGCAAGTGGTTTAGTGGT 1 chrXIII:183743-184161 ( 48) GCGCAAGTGGTTTAGTGGT 1 chrIII:142556-143000 ( 25) GCGCAAGTGGTTTAGTGGT 1 chrVII:845441-845899 ( 29) GCGCAAGTGGTTTAGTGGT 1 chrXV:110777-111256 ( 49) GGGCGGTTAGTGTAGTGGT 1 chrVII:706906-707411 ( 53) GCTCGTATGGCGCAGTGGT 1 chrXVI:435703-436203 ( 43) GCTCGTATGGCGCAGTGGT 1 chrXV:980466-980964 ( 18) GGGCGTGTGGTCTAGTGGA 1 chrXIV:6460-6882 ( 8) GTGGGTGTGGTGTGTGGGT 1 chrIII:30-562 ( 41) GTGGGTGTGGTGTGTGGGT 1 chrXIV:631694-632122 ( 41) GGGCGTGTGGTCTAGAGGT 1 chrVI:4400-4996 ( 73) GTGGGTGTGGTGTGTGGGT 1 chrXIII:5247-5859 ( 42) GTGGGTGTGGTGTGTGGGT 1 chrIII:123388-123833 ( 70) GGGCGTGTGGTCTAGAGGT 1 chrVII:405277-405744 ( 10) GCTCGCGTGGCGTAATGGC 1 chrIV:1256890-1257311 ( 11) GCGAAAGTGGTTCAGTGGT 1 chrII:326643-327116 ( 18) GGTCCAATGGTCCAGTGGT 1 chrV:130897-131367 ( 53) GGTTTTATAGTGTAGTGGT 1 chrXII:1064835-1065377 ( 29) GTGTGTGTGGTGTGTGGGT 1 chrXII:489256-489585 ( 49) GACCGAGTAGTGTAGTGGG 1 chrV:6129-6578 ( 48) GTGAGCATGGTGTGTGGGT 1 chrV:487156-487597 ( 58) TCCGATATAGTGTAACGGC 1 chrV:176861-177371 ( 33) TCCGATATAGTGTAACGGC 1 chrVII:541583-542173 ( 22) TCCGATATAGTGTAACGGC 1 chrIV:1075296-1075736 ( 60) GTTCCAATAGTGTAGCGGC 1 chrVII:401357-401805 ( 49) TCCGATATAGTGTAACGGC 1 chrXI:140777-141363 ( 51) TCCGATATAGTGTAACGGC 1 chrIII:82321-82787 ( 11) TCCGATATAGTGTAACGGC 1 chrXIII:290567-291018 ( 59) TCCGATATAGTGTAACGGC 1 chrV:354674-355284 ( 5) TCCGATATAGTGTAACGGC 1 chrXVI:210011-210508 ( 36) TCCGATATAGTGTAACGGC 1 chrX:374226-374326 ( 22) TCCGTGATAGTTTAATGGT 1 chrX:204494-204594 ( 40) TCCGTGATAGTTTAATGGT 1 chrVII:544415-544909 ( 18) TCCGTGATAGTTTAATGGT 1 chrXV:571705-572193 ( 59) TCCGTGATAGTTTAATGGT 1 chrII:405657-406201 ( 81) TCCGTGATAGTTTAATGGT 1 chrIV:976476-976824 ( 65) GAAATTGTGGTGTATGGGT 1 chrVII:26-204 ( 29) GGGGAGGTAGGGTAATGGA 1 chrVIII:466740-467224 ( 58) GCCTCCTTAGCTTAGTGGT 1 chrXVI:744084-744555 ( 15) GCCTCCTTAGCTTAGTGGT 1 chrV:207145-207621 ( 24) GCCATCTTAGTATAGTGGT 1 chrVII:319581-320075 ( 3) GCCATCTTAGTATAGTGGT 1 chrXI:313232-313688 ( 44) GCCATCTTAGTATAGTGGT 1 chrXIII:362835-363319 ( 37) GCCATCTTAGTATAGTGGT 1 chrVII:110432-110920 ( 52) GCCATCTTAGTATAGTGGT 1 chrVIII:556631-557264 ( 4) GTGGGTGTGGTGTGGGTGT 1 chrXV:709972-710397 ( 67) AGCGCCGTGGCGCAGTGGA 1 chrXVI:338702-339107 ( 47) AGCGCCGTGGCGCAGTGGA 1 chrV:99904-100373 ( 45) AGCGCCGTGGCGCAGTGGA 1 chrX:517649-517749 ( 52) AGCGCCGTGGCGCAGTGGA 1 chrXI:326293-327645 ( 55) GCCGCTATGGACCAATGGT 1 chrXIV:783832-784192 ( 67) GTTAGGGTAGTGTGTGGGT 1 chrXIII:302740-303118 ( 78) AGGGGTGTGGGGTGTGGGC 1 chrXI:431287-431672 ( 67) GTAAAAATAGTGTATGGGT 1 chrVII:726412-726784 ( 41) GTGTATATAGGGTATGGGT 1 chrVII:287180-287692 ( 51) GAAGCGGTGGCTCAATGGT 1 chrX:415811-415911 ( 14) GAAGCGGTGGCTCAATGGT 1 chrXI:302685-303199 ( 26) GAAGCGGTGGCTCAATGGT 1 chrX:617618-617718 ( 81) GGGAGTTTGGCCGAGTGGT 1 chrXVI:188605-188960 ( 4) GGAGAACTGGTGTAGAGGT 1 chrXII:673728-674276 ( 67) TAACGCGTGGTGTTGTGGT 1 chrVIII:148934-149290 ( 12) AATCCAATGGTGCATGGGT 1 chrIV:835762-836233 ( 6) GCGGTTGCGGGGCGTGGGT 1 chrXVI:699922-700418 ( 51) GAAGCTATGGTGTGTGGGG 1 chrXII:1028192-1028580 ( 64) TACATTTTGGTGCATGGGT 1 chrII:165074-165476 ( 34) TCTAACGCGGTGTATGGGC 1 chrXIII:145870-146295 ( 54) TGGTGTATGGTGTATGGAT 1 chrXV:27840-27960 ( 59) GTGACTGTAGATTGTGGGT 1 chrV:53516-53995 ( 73) GTACGAATGGGATAATGGC 1 chrIV:358085-358431 ( 33) TGTCAGATAATGTATGGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBSNTRTRGTGTAGTGGT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 19 n= 45346 bayes= 9.37059 E= 3.6e-119 -215 -1307 191 -49 -157 110 83 -104 -157 78 93 -57 -93 106 97 -215 -22 50 68 -93 -83 -12 -44 72 43 -402 126 -142 -1307 -302 -1307 165 55 -1307 153 -1307 -474 -1307 238 -1307 -374 -32 -170 130 -215 -57 162 -49 -1307 -12 -402 139 145 -1307 -44 -474 -35 -1307 150 -49 -315 -70 30 99 -1307 -1307 238 -474 -474 -1307 238 -1307 -215 -22 -302 126 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBSNTRTRGTGTAGTGGT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 19 nsites= 86 E= 3.6e-119 0.069767 0.000000 0.709302 0.220930 0.104651 0.406977 0.337209 0.151163 0.104651 0.325581 0.360465 0.209302 0.162791 0.395349 0.372093 0.069767 0.267442 0.267442 0.302326 0.162791 0.174419 0.174419 0.139535 0.511628 0.418605 0.011628 0.453488 0.116279 0.000000 0.023256 0.000000 0.976744 0.453488 0.000000 0.546512 0.000000 0.011628 0.000000 0.988372 0.000000 0.023256 0.151163 0.058140 0.767442 0.069767 0.127907 0.581395 0.220930 0.000000 0.174419 0.011628 0.813953 0.848837 0.000000 0.139535 0.011628 0.244186 0.000000 0.534884 0.220930 0.034884 0.116279 0.232558 0.616279 0.000000 0.000000 0.988372 0.011628 0.011628 0.000000 0.988372 0.000000 0.069767 0.162791 0.023256 0.744186 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBSNTRTRGTGTAGTGGT MEME-3 regular expression -------------------------------------------------------------------------------- [GT][CG][GCT][CG][GAC]T[GA]T[GA]GT[GT]TA[GAT][TG]GGT -------------------------------------------------------------------------------- Time 828.11 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:788305-788779 4.36e-01 100 chrIV:132708-133287 4.28e-01 100 chrXV:900752-900923 9.98e-01 100 chrVII:876177-876645 1.68e-11 39_[-1(7.30e-09)]_6_[-2(4.84e-10)]_\ 10 chrIV:579047-580127 7.87e-01 100 chrXII:932057-932516 6.68e-01 100 chrIV:437492-438011 2.85e-07 77_[-1(2.71e-09)]_2 chrXIV:576011-576811 2.67e-01 100 chrXII:657507-657983 4.69e-01 100 chrVII:328359-328909 3.17e-06 31_[-2(1.09e-09)]_45 chrIII:123388-123833 4.43e-10 31_[+2(2.63e-09)]_14_[-3(5.57e-08)]_\ 12 chrXIV:585719-586500 5.44e-01 100 chrVII:823256-823709 3.51e-04 56_[-1(1.52e-07)]_23 chrXV:779672-780970 4.85e-01 100 chrXII:793712-795563 7.50e-01 100 chrXII:731854-732317 3.51e-08 61_[-1(1.37e-09)]_18 chrVII:882442-884420 3.77e-02 100 chrIV:644982-645426 2.48e-14 13_[+2(2.72e-10)]_14_[-3(2.74e-09)]_\ 30 chrXIII:759633-760109 3.52e-02 11_[-1(4.29e-05)]_68 chrVII:878175-879032 4.09e-01 100 chrVII:366073-366727 9.98e-01 100 chrXIV:783832-784192 4.70e-03 44_[+3(2.23e-05)]_3_[+3(2.87e-06)]_\ 15 chrXII:673728-674276 3.88e-03 66_[+3(1.20e-05)]_15 chrXIII:224066-224386 7.97e-01 100 chrIX:129368-129844 6.47e-05 8_[+1(6.52e-06)]_71 chrIV:946103-946616 1.27e-09 9_[-1(2.02e-07)]_22_[-2(2.63e-09)]_\ 24 chrVII:600884-601360 6.11e-01 100 chrX:119908-120008 8.24e-01 100 chrXIV:725964-726425 1.02e-07 45_[+1(7.30e-09)]_34 chrXII:712295-712771 7.28e-02 56_[-2(6.03e-05)]_20 chrXV:80476-80952 8.28e-01 100 chrX:651219-651319 6.46e-01 100 chrXII:949713-950189 5.24e-01 100 chrX:90053-90153 9.95e-01 100 chrXI:302685-303199 8.19e-04 25_[+3(7.14e-06)]_56 chrXV:444708-445600 7.49e-01 100 chrII:564769-565245 9.10e-01 100 chrX:233706-233806 1.12e-11 36_[-1(3.13e-08)]_6_[-2(1.87e-08)]_\ 13 chrX:139174-139274 9.92e-01 100 chrXIII:5247-5859 2.00e-04 41_[-3(5.57e-08)]_[-3(5.57e-08)]_21 chrVI:223902-224212 3.20e-01 100 chrXVI:378654-379008 3.17e-01 100 chrXIII:463338-463877 2.85e-02 100 chrXI:326293-327645 3.30e-05 54_[-3(2.63e-06)]_27 chrXV:901464-901720 7.17e-01 100 chrVIII:105465-105664 9.96e-01 100 chrXIII:753730-753853 9.09e-01 100 chrII:332282-332772 8.13e-01 100 chrXIII:886698-887174 7.34e-01 100 chrI:71656-72866 1.20e-01 100 chrXII:592352-592849 3.51e-08 41_[+1(1.37e-09)]_38 chrVI:265279-265755 1.15e-01 100 chrXIII:626125-626863 3.81e-01 100 chrXII:656769-657189 1.92e-10 19_[+2(3.37e-07)]_6_[+1(2.08e-09)]_\ 30 chrXV:759112-759597 8.37e-01 100 chrIV:416877-417238 2.89e-01 100 chrXI:162261-162758 4.50e-11 42_[+2(1.24e-09)]_14_[-3(9.71e-08)]_\ 1 chrV:85681-86211 7.65e-01 100 chrXV:32-283 4.88e-03 53_[-3(5.57e-05)]_5_[+1(9.04e-05)]_\ 2 chrXII:737751-738052 9.69e-01 100 chrIV:765336-765547 3.30e-01 100 chrVIII:34593-34921 4.48e-01 100 chrVIII:548559-548989 7.76e-01 100 chrXVI:435703-436203 1.24e-09 4_[+2(3.87e-07)]_14_[-3(1.93e-08)]_\ 39 chrV:140980-141477 9.43e-01 100 chrXII:796376-796927 8.62e-01 100 chrXVI:280630-281914 8.16e-02 100 chrXII:855597-855870 9.96e-01 100 chrXIII:661588-662223 7.79e-01 100 chrV:424620-424933 9.73e-01 100 chrXI:490741-491173 6.01e-07 67_[-1(3.13e-08)]_12 chrXI:143088-143615 3.67e-01 100 chrII:477031-477504 3.08e-01 100 chrXIV:499321-499846 9.28e-01 100 chrXVI:96216-96692 9.90e-01 100 chrVII:205306-205778 1.29e-06 35_[-1(1.27e-08)]_44 chrVIII:556631-557264 9.18e-03 3_[+3(2.40e-06)]_78 chrIII:163363-164001 6.59e-02 100 chrIV:538998-539220 2.76e-01 100 chrII:415495-415883 7.74e-01 100 chrVI:223507-223983 2.54e-02 100 chrXIII:837717-838195 1.27e-09 28_[-1(2.02e-07)]_22_[-2(2.63e-09)]_\ 5 chrXVI:303555-303759 7.07e-01 100 chrIII:295277-295738 1.05e-12 33_[-1(6.05e-11)]_6_[-2(4.71e-09)]_\ 16 chrXII:232141-234296 3.70e-01 100 chrVI:4400-4996 2.00e-04 45_[-3(4.68e-05)]_8_[-3(5.57e-08)]_\ 9 chrXII:636942-637215 7.08e-02 13_[-1(3.74e-05)]_66 chrIV:508887-509363 9.72e-01 100 chrXIV:631694-632122 4.43e-10 2_[+2(2.63e-09)]_14_[-3(5.57e-08)]_\ 41 chrVII:726412-726784 2.62e-02 40_[-3(6.60e-06)]_41 chrIV:591640-591948 5.24e-02 100 chrXVI:781158-781634 6.94e-01 100 chrV:60971-62183 2.90e-01 100 chrV:363794-364002 4.57e-01 100 chrXV:980466-980964 5.12e-05 17_[+3(2.64e-08)]_64 chrVII:801964-802440 7.07e-01 100 chrXIV:575263-575783 7.80e-01 100 chrXIII:751433-751909 2.67e-01 100 chrII:167874-168231 9.23e-01 100 chrXI:108705-109101 2.87e-01 100 chrX:703262-703362 8.62e-01 100 chrXVI:279786-280262 2.99e-01 100 chrXIII:761869-762257 9.99e-01 100 chrXI:356150-356486 1.13e-01 100 chrV:53516-53995 4.24e-02 72_[+3(3.48e-05)]_9 chrXVI:770690-771149 5.38e-01 100 chrXII:637489-637659 4.85e-02 100 chrIII:168882-169313 2.92e-01 100 chrXVI:404795-405634 7.79e-01 100 chrXV:159311-160261 5.79e-02 100 chrXI:518769-519294 4.55e-01 100 chrVII:845441-845899 8.14e-12 28_[+3(7.00e-09)]_13_[-2(1.25e-08)]_\ 16 chrX:424297-424397 3.10e-07 29_[+1(7.30e-09)]_50 chrXII:27-336 2.29e-01 100 chrXII:369184-371084 4.39e-01 100 chrXII:1064307-1064557 8.91e-01 100 chrVII:919920-920214 9.10e-01 100 chrVII:405277-405744 4.50e-11 9_[+3(9.71e-08)]_14_[-2(1.24e-09)]_\ 34 chrXIII:923411-923844 6.20e-01 100 chrXVI:768971-769510 8.42e-05 31_[+2(3.31e-08)]_45 chrVI:64290-64483 8.73e-01 100 chrXVI:40306-40721 3.91e-01 100 chrVII:110432-110920 4.50e-07 13_[+2(3.37e-07)]_14_[-3(2.40e-06)]_\ 30 chrXII:809194-809654 1.91e-01 100 chrIII:142556-143000 1.10e-06 24_[-3(7.00e-09)]_57 chrVII:787227-787703 8.24e-01 100 chrIV:768618-769094 2.19e-01 100 chrXIII:296730-298889 4.68e-01 100 chrXII:374153-374670 1.79e-08 [-1(3.13e-08)]_6_[-2(2.05e-07)]_49 chrXIV:88805-89793 9.98e-01 100 chrXVI:172875-173901 9.93e-01 100 chrIV:48684-49059 2.24e-01 100 chrVIII:115950-116397 3.56e-07 28_[+1(6.05e-11)]_51 chrXV:1027919-1028327 9.19e-01 100 chrX:121543-121643 2.11e-01 100 chrXV:678528-679190 5.62e-01 100 chrII:235729-236410 7.70e-02 100 chrXII:645824-646170 6.65e-01 100 chrXV:216216-216699 9.05e-01 100 chrVII:115262-115769 2.24e-06 29_[-1(3.09e-09)]_50 chrIV:974260-974632 1.77e-01 100 chrXIII:145870-146295 3.51e-03 53_[-3(2.54e-05)]_28 chrIX:99613-100038 1.46e-01 100 chrXVI:744084-744555 8.63e-08 14_[+3(2.19e-06)]_14_[-2(1.90e-07)]_\ 29 chrXII:781420-781907 7.76e-01 100 chrV:362176-362490 4.38e-01 100 chrXII:489256-489585 1.78e-06 27_[-1(2.22e-06)]_[+3(6.65e-07)]_33 chrIX:183261-183712 4.61e-15 18_[+2(2.01e-10)]_7_[+1(2.44e-11)]_\ 30 chrXII:950117-950423 6.45e-01 100 chrXIII:225312-225733 5.96e-01 100 chrI:142977-143535 8.03e-01 100 chrXIV:229700-230162 9.60e-01 100 chrII:44990-45358 8.15e-01 100 chrVI:137292-137775 1.96e-10 17_[+2(5.20e-08)]_7_[+1(5.48e-10)]_\ 31 chrXI:219699-220112 1.92e-10 46_[-1(2.08e-09)]_6_[-2(3.37e-07)]_\ 3 chrIV:616-852 7.02e-01 100 chrXII:734625-735044 4.61e-15 24_[-1(2.44e-11)]_7_[-2(2.01e-10)]_\ 24 chrXII:198523-199670 5.31e-01 100 chrI:180935-181476 1.94e-01 100 chrXVI:210011-210508 1.69e-03 35_[-3(1.12e-06)]_46 chrV:311858-312311 6.81e-14 3_[+2(4.71e-09)]_6_[+1(1.35e-10)]_\ 46 chrXIV:560433-561007 1.05e-12 37_[+2(4.71e-09)]_6_[+1(6.05e-11)]_\ 12 chrVIII:401056-401299 9.98e-01 100 chrXV:312524-312953 7.07e-01 100 chrXV:1003920-1004426 8.94e-02 100 chrXII:257708-258184 8.11e-01 100 chrIV:358085-358431 7.80e-02 32_[+3(4.42e-05)]_49 chrXII:815513-815989 9.16e-01 100 chrIV:721794-722105 4.19e-01 100 chrXV:94450-94854 3.81e-01 100 chrV:85051-85598 2.65e-01 100 chrXII:940912-941334 3.82e-01 100 chrX:73360-73460 6.43e-01 100 chrII:408548-408927 8.24e-02 100 chrXIII:388239-388718 6.46e-01 100 chrI:71025-71312 6.21e-01 100 chrXVI:96445-96921 6.37e-01 100 chrVIII:296882-297238 4.25e-01 100 chrVIII:103869-104296 7.98e-01 100 chrXIII:650998-651474 4.60e-01 100 chrV:408938-409597 8.60e-02 100 chrIV:1354714-1354873 9.98e-01 100 chrXI:431287-431672 2.04e-02 66_[-3(6.60e-06)]_15 chrVI:95448-95882 1.59e-02 100 chrXIII:808053-808541 3.70e-13 13_[+2(4.71e-09)]_14_[-3(2.74e-09)]_\ 30 chrV:6129-6578 6.15e-03 47_[-3(9.13e-07)]_34 chrXV:505100-505522 4.86e-01 100 chrXVI:856049-856374 5.57e-01 100 chrXVI:279566-280042 6.75e-01 100 chrIV:884136-884632 2.01e-08 26_[+3(1.44e-07)]_55 chrXVI:303999-304296 8.41e-01 100 chrX:227779-227879 3.80e-01 100 chrXVI:66922-67398 3.02e-02 100 chrXII:282491-283720 4.03e-01 100 chrIV:1238087-1238364 7.04e-01 100 chrIV:218396-218676 3.23e-01 100 chrII:592900-593287 5.85e-01 100 chrXVI:277857-278333 8.04e-01 100 chrXV:287974-288440 1.99e-04 41_[-1(2.02e-07)]_38 chrVII:534532-535283 6.73e-01 100 chrXIII:168572-169079 1.27e-09 26_[-1(2.02e-07)]_22_[-2(2.63e-09)]_\ 7 chrIV:488528-489101 5.47e-07 47_[+2(1.12e-08)]_7_[+1(1.30e-05)]_\ 1 chrXI:458352-458901 4.92e-01 100 chrXII:254481-254957 4.58e-01 100 chrII:604110-604939 3.60e-01 100 chrXVI:812830-813078 6.07e-02 100 chrIV:1525301-1525732 6.21e-01 100 chrIII:122265-122756 3.00e-01 100 chrXIII:223282-223758 1.82e-01 100 chrXIV:87280-87933 8.86e-01 100 chrXII:897665-898059 8.23e-01 100 chrVII:778308-778784 3.48e-01 100 chrIV:1362281-1362599 4.52e-01 100 chrIII:293684-294160 9.30e-01 100 chrXIV:301709-302191 6.41e-01 100 chrXVI:560007-560523 3.13e-06 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1.29e-06 27_[-1(1.27e-08)]_52 chrX:542763-542863 1.27e-09 4_[+2(2.63e-09)]_22_[+1(2.02e-07)]_\ 29 chrV:461611-462210 7.39e-01 100 chrXIII:754399-754843 8.75e-01 100 chrV:176861-177371 2.21e-09 32_[+3(1.12e-06)]_14_[-2(1.09e-09)]_\ 11 chrX:354047-354147 1.27e-09 23_[-1(2.02e-07)]_22_[-2(2.63e-09)]_\ 10 chrIV:117092-117604 6.54e-01 100 chrIX:255011-255487 5.76e-01 100 chrXV:412842-413318 4.16e-01 100 chrII:236847-237243 9.89e-01 100 chrVII:148347-148823 6.59e-01 100 chrII:605711-606127 3.52e-01 100 chrXIV:602138-602534 4.61e-15 32_[-1(2.44e-11)]_7_[-2(2.01e-10)]_\ 16 chrVII:648892-649444 1.43e-01 100 chrVI:162028-162436 1.12e-06 45_[+3(7.00e-09)]_36 chrXV:285592-285747 1.53e-01 100 chrXVI:214523-215224 8.71e-01 100 chrVIII:382900-383387 8.13e-02 100 chrX:607849-607949 2.05e-01 100 chrVII:561413-561978 2.85e-07 70_[+1(2.71e-09)]_9 chrXI:355757-356233 7.89e-02 100 chrXVI:785611-786155 7.93e-01 100 chrIV:914678-915254 8.37e-01 100 chrIV:1175616-1176103 2.95e-10 26_[-1(9.61e-08)]_6_[-2(2.63e-09)]_\ 23 chrXVI:338702-339107 5.66e-08 8_[+2(4.35e-08)]_14_[-3(2.63e-06)]_\ 35 chrIII:292640-292993 9.48e-01 100 chrIV:355525-355762 8.27e-01 100 chrIV:1355717-1356035 9.58e-01 100 chrXIII:651936-652928 6.06e-01 100 chrX:381255-381355 5.56e-01 100 chrVII:185530-185969 1.49e-11 29_[+2(4.84e-10)]_6_[+1(7.30e-09)]_\ 20 chrV:102315-102449 2.71e-01 100 chrXVI:453462-453742 7.01e-02 100 chrV:77971-78168 3.86e-01 100 chrVII:311833-312210 8.77e-02 100 chrXII:96139-96288 8.44e-01 100 chrXV:867536-868012 6.83e-01 100 chrXVI:74977-75271 3.65e-01 100 chrXI:105547-106023 2.12e-01 100 chrXV:967985-968433 2.17e-03 100 chrIV:550758-551234 1.13e-01 100 chrIX:210463-210919 4.61e-15 30_[-1(2.44e-11)]_7_[-2(2.01e-10)]_\ 18 chrVII:310440-311773 6.71e-01 100 chrXIII:222864-222995 1.00e+00 100 chrXVI:302623-303001 6.06e-01 100 chrIV:229696-230172 7.81e-01 100 chrVIII:466740-467224 6.09e-04 57_[+3(2.19e-06)]_24 chrV:138441-138989 4.50e-11 [+3(9.71e-08)]_14_[-2(1.24e-09)]_43 chrXI:379481-379925 2.61e-09 33_[-1(1.52e-07)]_7_[-2(1.12e-08)]_\ 15 chrXVI:787045-787521 7.86e-01 100 chrXI:618783-619241 1.21e-01 100 chrV:487156-487597 2.21e-09 19_[+2(1.09e-09)]_14_[-3(1.12e-06)]_\ 24 chrV:207145-207621 4.50e-07 23_[+3(2.40e-06)]_14_[-2(3.37e-07)]_\ 20 chrIV:520740-521203 3.50e-08 50_[+3(2.74e-09)]_31 chrXVI:789525-790001 1.74e-01 100 chrXV:33410-33886 6.72e-01 100 chrVII:706906-707411 1.24e-09 14_[+2(3.87e-07)]_14_[-3(1.93e-08)]_\ 29 chrXVI:242801-243066 7.55e-01 100 chrIV:1256890-1257311 6.79e-06 10_[-3(1.86e-07)]_71 chrIV:1352311-1352758 3.30e-05 26_[+1(7.30e-09)]_53 chrXV:853997-854456 6.81e-14 25_[+2(4.71e-09)]_6_[+1(1.35e-10)]_\ 24 chrXV:709972-710397 8.80e-04 66_[+3(2.63e-06)]_15 chrXII:1028192-1028580 6.39e-02 63_[-3(1.83e-05)]_18 chrXV:978568-979178 5.57e-01 100 chrXIV:230450-230769 1.84e-02 100 chrXII:449373-449849 8.92e-01 100 chrXV:725346-725585 9.66e-01 100 chrX:390880-390980 2.95e-10 13_[+2(2.63e-09)]_6_[+1(9.61e-08)]_\ 36 chrV:435611-436055 3.36e-05 13_[+1(7.30e-09)]_66 chrXII:1018946-1019403 5.05e-01 100 chrXIII:504685-505194 1.29e-06 12_[-1(1.27e-08)]_67 chrV:67119-67301 9.74e-01 100 chrXV:445508-445834 7.95e-01 100 chrXVI:520172-520534 5.43e-01 100 chrX:422685-422785 2.95e-10 23_[-1(9.61e-08)]_6_[-2(2.63e-09)]_\ 26 chrIX:316101-316617 1.18e-01 100 chrIII:168128-168570 2.48e-14 16_[+2(2.72e-10)]_14_[-3(2.74e-09)]_\ 27 chrX:374226-374326 3.74e-10 21_[-3(1.65e-06)]_25_[+2(1.24e-09)]_\ 11 chrIII:177141-177589 4.84e-01 100 chrIV:309393-309772 5.61e-01 100 chrXV:117905-118200 5.79e-01 100 chrXIV:6460-6882 1.53e-04 7_[-3(5.57e-08)]_[-3(2.40e-06)]_55 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************