Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.040906
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.127273
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.15418
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.030477
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.181311
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background
Finished invoke:
  name: bg  status: 0  time: 0.040124
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 864.258188
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 112.303189
Invoking:
  centrimo -seqlen 500 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.17842
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.535282
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background -primary GRATCGAACCSVKGAYCTYCNGRTTAH /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.547896
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background -primary CDTGGCCNAGTKGKTWARGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.487965
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background -primary WACAYCCRTACAYYWY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.474627
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background -primary CCWTAMC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.405161
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background -primary AARAAAAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.494032
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.232519
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background -primary TAGTGGTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.275495
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background -primary AGAYCGGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.258241
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background -primary CGRTGAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.261861
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background -primary AMAAAGCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.331095
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background -primary CSGAAAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.266237
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background -primary GTTGCYA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.299351
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background -primary CRCCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.443776
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background -primary GCACGGW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.259848
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background -primary AGAGGTKA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo15  status: 0  time: 0.195231
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/spamo_out_16 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background -primary AGAYTATG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo16  status: 0  time: 0.228653
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/spamo_out_17 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background -primary AGAWGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo17  status: 0  time: 0.401561
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/spamo_out_18 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background -primary ATCAKCGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo18  status: 0  time: 0.242582
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/spamo_out_19 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background -primary CGCCASAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo19  status: 0  time: 0.352758
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/spamo_out_20 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background -primary ATTAGARG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo20  status: 0  time: 0.225745
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/spamo_out_21 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background -primary CACTTKCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo21  status: 0  time: 0.235489
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/spamo_out_22 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background -primary CACTATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo22  status: 0  time: 0.249506
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background --motif GRATCGAACCSVKGAYCTYCNGRTTAH /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.337831
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background --motif CDTGGCCNAGTKGKTWARGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.338613
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background --motif WACAYCCRTACAYYWY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.318143
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background --motif CCWTAMC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.230672
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background --motif AARAAAAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.244548
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.240058
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background --motif TAGTGGTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.237814
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background --motif AGAYCGGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.23913
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background --motif CGRTGAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.237937
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background --motif AMAAAGCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.238538
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background --motif CSGAAAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.234241
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background --motif GTTGCYA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.228498
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background --motif CRCCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.218611
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background --motif GCACGGW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.230342
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background --motif AGAGGTKA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa
Finished invoke:
  name: fimo15  status: 0  time: 0.238793
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/fimo_out_16 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background --motif AGAYTATG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa
Finished invoke:
  name: fimo16  status: 0  time: 0.242486
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/fimo_out_17 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background --motif AGAWGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa
Finished invoke:
  name: fimo17  status: 0  time: 0.237411
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/fimo_out_18 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background --motif ATCAKCGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa
Finished invoke:
  name: fimo18  status: 0  time: 0.241591
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/fimo_out_19 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background --motif CGCCASAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa
Finished invoke:
  name: fimo19  status: 0  time: 0.236917
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/fimo_out_20 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background --motif ATTAGARG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa
Finished invoke:
  name: fimo20  status: 0  time: 0.236174
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/fimo_out_21 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background --motif CACTTKCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa
Finished invoke:
  name: fimo21  status: 0  time: 0.232336
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/fimo_out_22 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/background --motif CACTATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/BY4741--CUP9.fa
Finished invoke:
  name: fimo22  status: 0  time: 0.212619
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP9/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.175973
Done