******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP2/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrXII:781506-781807 1.0000 100 chrXII:975883-976197 1.0000 100 chrVII:702268-702624 1.0000 100 chrIV:1461611-1462043 1.0000 100 chrXIV:585908-586310 1.0000 100 chrVIII:556674-557175 1.0000 100 chrV:311913-312258 1.0000 100 chrII:266227-266656 1.0000 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1.0000 100 chrVII:73766-74089 1.0000 100 chrV:53576-53905 1.0000 100 chrXV:94093-94182 1.0000 89 chrV:86446-86771 1.0000 100 chrXIV:602191-602443 1.0000 100 chrXIV:415794-415915 1.0000 100 chrIV:946145-946554 1.0000 100 chrVII:857300-857649 1.0000 100 chrVIII:382964-383321 1.0000 100 chrV:143864-143960 1.0000 96 chrXV:300900-301354 1.0000 100 chrV:362226-362437 1.0000 100 chrIV:491595-491951 1.0000 100 chrI:180980-181434 1.0000 100 chrIV:1075352-1075690 1.0000 100 chrXII:951570-951926 1.0000 100 chrXI:549005-549361 1.0000 100 chrXIII:122989-123345 1.0000 100 chrXIII:761891-762199 1.0000 100 chrIV:437544-437958 1.0000 100 chrII:544502-544858 1.0000 100 chrXI:552193-552549 1.0000 100 chrXIV:96099-96463 1.0000 100 chrVII:805068-805424 1.0000 100 chrXII:951037-951393 1.0000 100 chrII:556762-557118 1.0000 100 chrXV:254648-255004 1.0000 100 chrIV:83400-83701 1.0000 100 chrV:435670-435985 1.0000 100 chrXII:199304-199582 1.0000 100 chrV:407717-408073 1.0000 100 chrX:531653-531753 1.0000 100 chrIV:1352374-1352697 1.0000 100 chrIII:190915-191271 1.0000 100 chrXV:968175-968343 1.0000 100 chrXI:108769-109032 1.0000 100 chrXI:666452-666791 1.0000 100 chrV:85868-86224 1.0000 100 chrVII:346217-346422 1.0000 100 chrII:592947-593252 1.0000 100 chrXV:94528-94802 1.0000 100 chrXI:326335-326503 1.0000 100 chrXI:26228-26362 1.0000 100 chrXVI:935836-936192 1.0000 100 chrXIV:726076-726383 1.0000 100 chrXIV:102547-102859 1.0000 100 chrIV:1492527-1492883 1.0000 100 chrXIV:758853-759209 1.0000 100 chrII:645017-645323 1.0000 100 chrVII:535433-535789 1.0000 100 chrXIII:671430-671786 1.0000 100 chrXII:651010-651208 1.0000 100 chrXV:216296-216635 1.0000 100 chrIII:178375-178658 1.0000 100 chrV:29227-29583 1.0000 100 chrII:169381-169472 1.0000 91 chrXII:241662-241968 1.0000 100 chrXI:27-232 1.0000 100 chrIII:295334-295634 1.0000 100 chrXIII:551405-551760 1.0000 100 chrXV:566504-566860 1.0000 100 chrVII:661544-661897 1.0000 100 chrXII:899189-899545 1.0000 100 chrXV:673373-673729 1.0000 100 chrXIII:259068-259419 1.0000 100 chrXV:438470-438937 1.0000 100 chrII:393848-394204 1.0000 100 chrIV:1516689-1517045 1.0000 100 chrV:438546-438856 1.0000 100 chrVII:561479-561911 1.0000 100 chrX:213597-213697 1.0000 100 chrVII:602420-602776 1.0000 100 chrXII:121613-121969 1.0000 100 chrXII:369730-370086 1.0000 100 chrIX:115233-115589 1.0000 100 chrVI:84076-84228 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP2/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 594 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 59315 N= 594 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.316 C 0.184 G 0.184 T 0.316 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CUP2/background): A 0.322 C 0.178 G 0.178 T 0.322 ******************************************************************************** ******************************************************************************** MOTIF TGGCCBAGTKGKTWAAGSSHH MEME-1 width = 21 sites = 114 llr = 1778 E-value = 2.2e-333 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCCBAGTKGKTWAAGSSHH MEME-1 Description -------------------------------------------------------------------------------- Simplified A :2:::2a1::::26651::42 pos.-specific C :::763::12::1:11:5534 probability G :8a:22:9:5a61:3284521 matrix T a::323::94:464:121123 bits 2.5 * * 2.2 * * 2.0 * * 1.7 *** * * Relative 1.5 **** ** * Entropy 1.2 **** *** * * * (22.5 bits) 1.0 ***** *** ** *** 0.7 ***** *** ** *** 0.5 ***** ****** ** *** 0.2 ******************* * 0.0 --------------------- Multilevel TGGCCCAGTGGGTAAAGCCAC consensus TTT T TATGG GGCT sequence G TA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCBAGTKGKTWAAGSSHH MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIV:602191-602443 + 52 1.19e-11 AATGGTCTCT TGGCCCAGTTGGTTAAGGCAC CGTGCTAATA chrXIV:569789-570054 - 42 1.19e-11 AGTGGTCTCT TGGCCCAGTTGGTTAAGGCAC CGTGCTAATA chrIV:667868-668245 - 47 1.19e-11 ATTGGTCTCT TGGCCCAGTTGGTTAAGGCAC CGTGCTAATA chrXVI:880185-880523 - 38 1.19e-11 AATGGTCTCT TGGCCCAGTTGGTTAAGGCAC CGTGCTAATA chrV:551199-551490 - 37 1.19e-11 ACAGGTCTCT TGGCCCAGTTGGTTAAGGCAC CGTGCTAATA chrXII:734666-734959 + 47 1.19e-11 TTTGGTCTCT TGGCCCAGTTGGTTAAGGCAC CGTGCTAATA chrIX:183321-183682 - 35 1.19e-11 CCTGGTCTCT TGGCCCAGTTGGTTAAGGCAC CGTGCTAATA chrIX:210510-210918 + 8 1.19e-11 GGTCTCT TGGCCCAGTTGGTTAAGGCAC CGTGCTAATA chrXVI:819349-819691 + 66 1.19e-11 AATGGTCTCT TGGCCCAGTTGGTTAAGGCAC CGTGCTAATA chrIII:295334-295634 + 57 8.68e-11 TAAGCTTCTA TGGCCAAGTTGGTAAGGCGCC ACACTAGTAA chrVIII:116014-116343 - 24 8.68e-11 AGAGCTTCTA TGGCCAAGTTGGTAAGGCGCC ACACTAGTAA chrIX:174883-175262 + 16 8.68e-11 CGAGCTTCTA TGGCCAAGTTGGTAAGGCGCC ACACTAGTAA chrXV:353901-354270 - 51 8.68e-11 ACTGCTTCTA TGGCCAAGTTGGTAAGGCGCC ACACTAGTAA chrIV:434059-434517 - 71 8.68e-11 AAGCTTCTA TGGCCAAGTTGGTAAGGCGCC ACACTAGTAA chrX:59020-59120 - 24 8.68e-11 GAAGCTTCTA TGGCCAAGTTGGTAAGGCGCC ACACTAGTAA chrXIV:560577-560943 - 28 8.68e-11 CGGGCTTCTA TGGCCAAGTTGGTAAGGCGCC ACACTAGTAA chrIV:1150704-1151104 - 60 1.64e-10 TCAGTCCCAG TGGCCGAGTGGTTAAGGCGAT GCCTGCTATT chrVI:191366-191779 - 64 1.64e-10 TCTGTCCCAG TGGCCGAGTGGTTAAGGCGAT GCCCTGCTAT chrXII:784206-784518 + 49 1.64e-10 ACCGTCCCAG TGGCCGAGTGGTTAAGGCGAT GCCTGCTATT chrVII:561479-561911 - 71 2.00e-10 TTGGCAACT TGGCCGAGTGGTTAAGGCGAA AGATTAGAAA chrXIII:259068-259419 - 19 2.00e-10 TATGGCAACT TGGCCGAGTGGTTAAGGCGAA AGATTAGAAA chrIV:437544-437958 + 78 2.00e-10 TAAGGCAACT TGGCCGAGTGGTTAAGGCGAA AG chrV:86446-86771 + 53 2.00e-10 TATGGCAACT TGGCCGAGTGGTTAAGGCGAA AGATTAGAAA chrXII:167852-168184 - 30 2.00e-10 TATGGCAACT TGGCCGAGTGGTTAAGGCGAA AGATTAGAAA chrIV:1305476-1305814 + 42 2.00e-10 TAAGGCAACT TGGCCGAGTGGTTAAGGCGAA AGATTAGAAA chrII:226911-227329 + 12 2.00e-10 CGAGGCAACT TGGCCGAGTGGTTAAGGCGAA AGATTAGAAA chrXII:731922-732246 + 63 2.95e-10 AATGGGAGTT TGGCCGAGTGGTTTAAGGCGT CAGATTTAGG chrX:617748-617848 + 59 2.95e-10 AATGGGAGTT TGGCCGAGTGGTTTAAGGCGT CAGATTTAGG chrXII:592410-592791 - 42 2.95e-10 AATGGGAGTT TGGCCGAGTGGTTTAAGGCGT CAGATTTAGG chrIII:227779-228149 + 35 3.54e-10 AATGGCACTA TGGCCGAGTGGTTAAGGCGAG AGACTCGAAT chrXV:854046-854418 - 50 7.18e-10 TCAGGGCACA TGGCGCAGTTGGTAGCGCGCT TCCCTTGCAA chrI:166089-166447 + 56 7.18e-10 GTTGGGCACA TGGCGCAGTTGGTAGCGCGCT TCCCTTGCAA chrXII:214783-215120 - 27 7.18e-10 TTAGGGCACA TGGCGCAGTTGGTAGCGCGCT TCCCTTGCAA chrVII:794247-794574 + 64 7.18e-10 TGCGGGCACA TGGCGCAGTTGGTAGCGCGCT TCCCTTGCAA chrV:311913-312258 - 33 7.18e-10 TCTGGGCACA TGGCGCAGTTGGTAGCGCGCT TCCCTTGCAA chrXIV:102547-102859 + 70 1.17e-09 TAAGACTCCA TGGCCAAGTTGGTTAAGGCGT GCGACTGTTA chrIII:127570-127865 + 56 1.17e-09 AATGACTCCA TGGCCAAGTTGGTTAAGGCGT GCGACTGTTA chrXVI:810504-810857 + 53 1.17e-09 TGCGACTCCA TGGCCAAGTTGGTTAAGGCGT GCGACTGTTA chrXII:975883-976197 - 39 1.17e-09 AAAGACTCCA TGGCCAAGTTGGTTAAGGCGT GCGACTGTTA chrXIV:726076-726383 - 11 2.50e-09 TTTGGAGGGT TGGCCGAGTGGTCTAAGGCGG CAGACTTAAG chrIV:410225-410526 + 61 2.50e-09 ATTGGGCGTG TGGCGTAGTCGGTAGCGCGCT CCCTTAGCAT chrX:424392-424492 - 1 2.50e-09 GATGGAGGGT TGGCCGAGTGGTCTAAGGCGG chrII:9399-9749 + 66 2.50e-09 CGTGGAGGGT TGGCCGAGTGGTCTAAGGCGG CAGACTTAAG chrVI:204830-205144 - 32 2.50e-09 TTCGGGCGTG TGGCGTAGTCGGTAGCGCGCT CCCTTAGCAT chrXI:219730-220053 + 61 2.50e-09 ATAGGGCGTG TGGCGTAGTCGGTAGCGCGCT CCCTTAGCAT chrVII:774185-774539 + 44 2.50e-09 ATTGGGCGTG TGGCGTAGTCGGTAGCGCGCT CCCTTAGCAT chrIV:519578-519876 + 73 2.50e-09 TACGGAGGGT TGGCCGAGTGGTCTAAGGCGG CAGACTT chrVII:857300-857649 - 40 5.73e-09 AGTGGTTGTT TGGCCGAGCGGTCTAAGGCGC CTGATTCAAG chrXII:628213-628627 + 20 5.73e-09 AGTGGTTGTT TGGCCGAGCGGTCTAAGGCGC CTGATTCAAG chrVII:205359-205697 + 50 5.73e-09 AGTGGTTGTT TGGCCGAGCGGTCTAAGGCGC CTGATTCAAG chrXIII:504725-505152 + 14 5.73e-09 AGTGGTTGTT TGGCCGAGCGGTCTAAGGCGC CTGATTCAAG chrIV:1461611-1462043 - 25 5.73e-09 AGTGGTTGTT TGGCCGAGCGGTCTAAGGCGC CTGATTCAAG chrII:36260-36535 + 58 1.74e-08 TAAGCGGATT TAGCTCAGTTGGGAGAGCGCC AGACTGAAGA chrVI:157817-158173 - 35 1.74e-08 GAAGCGGATT TAGCTCAGTTGGGAGAGCGCC AGACTGAAGA chrXVI:560051-560467 - 53 1.74e-08 TGAGCGGATT TAGCTCAGTTGGGAGAGCGCC AGACTGAAGA chrVIII:358326-358783 - 38 1.74e-08 TAAGCGGATT TAGCTCAGTTGGGAGAGCGCC AGACTGAAGA chrVII:440480-441081 - 50 1.74e-08 TATGCGGATT TAGCTCAGTTGGGAGAGCGCC AGACTGAAGA chrXVI:622461-622804 - 22 1.74e-08 TATGCGGATT TAGCTCAGTTGGGAGAGCGCC AGACTGAAGA chrVII:115323-115692 + 38 1.95e-08 TCATCCTTGT TAGCTCAGTTGGTAGAGCGTT CGGCTTTTAA chrV:438546-438856 + 56 2.72e-08 TTAGGTTTCG TGGTCTAGTCGGTTATGGCAT CTGCTTAACA chrXI:379518-379812 + 72 2.72e-08 ATAGGTTTCG TGGTCTAGTCGGTTATGGCAT CTGCTTAA chrX:378191-378291 + 46 2.72e-08 ATAGGTTTCG TGGTCTAGTCGGTTATGGCAT CTGCTTAACA chrXIII:420494-420828 - 23 2.72e-08 ACAGGTTTCG TGGTCTAGTCGGTTATGGCAT CTGCTTAACA chrVIII:85228-85523 - 19 2.72e-08 TTTGGTTTCG TGGTCTAGTCGGTTATGGCAT CTGCTTAACA chrVII:823309-823656 + 57 2.72e-08 AGTGGTTTCG TGGTCTAGTCGGTTATGGCAT CTGCTTAACA chrXIII:372364-372684 - 17 2.72e-08 CCTGGTTTCG TGGTCTAGTCGGTTATGGCAT CTGCTTAACA chrXI:308080-308343 - 29 2.72e-08 AGTGGTTTCG TGGTCTAGTCGGTTATGGCAT CTGCTTAACA chrIV:1352374-1352697 - 26 4.63e-08 ATAGCCTTGT TGGCGCAATCGGTAGCGCGTA TGACTCTTAA chrV:435670-435985 - 20 4.63e-08 AGAGCCTTGT TGGCGCAATCGGTAGCGCGTA TGACTCTTAA chrXI:202841-203161 + 55 4.63e-08 AAAGCCTTGT TGGCGCAATCGGTAGCGCGTA TGACTCTTAA chrIX:300146-300499 - 1 4.63e-08 ATAGCCTTGT TGGCGCAATCGGTAGCGCGTA chrXVI:581912-582296 + 15 4.63e-08 AGAGCCTTGT TGGCGCAATCGGTAGCGCGTA TGACTCTTAA chrXIII:480465-480848 - 60 4.63e-08 GTAGCCTTGT TGGCGCAATCGGTAGCGCGTA TGACTCTTAA chrVII:122127-122471 + 27 4.63e-08 TTAGCCTTGT TGGCGCAATCGGTAGCGCGTA TGACTCTTAA chrXI:490804-491135 + 56 5.12e-08 TTGTTCCTCG TGGCCCAATGGTCACGGCGTC TGGCTACGAA chrXII:374189-374602 + 17 5.12e-08 TTGTTCCTCG TGGCCCAATGGTCACGGCGTC TGGCTACGAA chrX:233758-233858 + 77 5.12e-08 TTGTTCCTCG TGGCCCAATGGTCACGGCGTC TGG chrV:492246-492570 - 39 5.12e-08 CTATTCCTCG TGGCCCAATGGTCACGGCGTC TGGCTACGAA chrIV:884219-884542 + 38 1.11e-07 AATGCTCGTG TAGCTCAGTGGTTAGAGCTTC GTGCTTATAG chrIV:1175668-1176071 + 17 2.26e-07 AAAGCTTCAG TAGCTCAGTAGGAAGAGCGTC AGTCTCATAA chrX:390935-391035 - 37 2.26e-07 AGTGCTTCAG TAGCTCAGTAGGAAGAGCGTC AGTCTCATAA chrX:422751-422851 + 41 2.26e-07 TATGCTTCAG TAGCTCAGTAGGAAGAGCGTC AGTCTCATAA chrX:531653-531753 + 9 2.67e-07 AGCGCAAG TGGTTTAGTGGTAAAATCCAA CGTTGCCATC chrIV:83400-83701 + 55 2.67e-07 TTAGCGCAAG TGGTTTAGTGGTAAAATCCAA CGTTGCCATC chrIV:992641-992977 + 80 2.67e-07 TGAGCGCAAG TGGTTTAGTGGTAAAATCCAA chrXVI:860212-860533 + 64 2.67e-07 CAAGCGCAAG TGGTTTAGTGGTAAAATCCAA CGTTGCCATC chrVI:162060-162365 + 73 2.67e-07 CAAGCGCAAG TGGTTTAGTGGTAAAATCCAA CGTTGCC chrVII:845485-845853 + 37 2.67e-07 CAAGCGCAAG TGGTTTAGTGGTAAAATCCAA CGTTGCCATC chrVII:930895-931196 - 1 2.67e-07 TAAGCGCAAG TGGTTTAGTGGTAAAATCCAA chrXVI:572097-572476 + 40 2.67e-07 TTCGCGCAAG TGGTTTAGTGGTAAAATCCAA CGTTGCCATC chrXV:281988-282336 + 59 2.67e-07 AGCGCGCAAG TGGTTTAGTGGTAAAATCCAA CGTTGCCATC chrIII:142635-142940 - 7 2.67e-07 CTAGCGCAAG TGGTTTAGTGGTAAAATCCAA CGTTGC chrXIII:183815-184105 - 31 2.67e-07 ATCGCGCAAG TGGTTTAGTGGTAAAATCCAA CGTTGCCATC chrXV:300900-301354 + 27 5.42e-07 ATCGGGCGTG TGGTCTAGTGGTATGATTCTC GCTTTGGGCG chrXII:92375-92786 + 25 5.42e-07 TAAGGGCGTG TGGTCTAGTGGTATGATTCTC GCTTTGGGCG chrVIII:388795-389179 - 31 5.42e-07 CATGGGCGTG TGGTCTAGTGGTATGATTCTC GCTTTGGGCG chrXIV:567940-568324 + 40 5.42e-07 ATCGGGCGTG TGGTCTAGTGGTATGATTCTC GCTTTGGGCG chrVI:101224-101578 + 32 5.42e-07 TTCGGGCGTG TGGTCTAGTGGTATGATTCTC GCTTTGGGCG chrXIII:195955-196375 - 28 5.42e-07 CAAGGGCGTG TGGTCTAGTGGTATGATTCTC GCTTTGGGCG chrXV:464269-464656 + 45 5.42e-07 CAAGGGCGTG TGGTCTAGTGGTATGATTCTC GCTTTGGGCG chrII:326695-327047 - 17 1.03e-06 CCGGGTCCAA TGGTCCAGTGGTTCAAGACGT CGCCTTTACA chrIV:946145-946554 + 20 1.64e-06 CGACTCTCGG TAGCCAAGTTGGTTTAAGGCG CAAGACTGTA chrX:542832-542932 - 45 1.64e-06 ATACTCTCGG TAGCCAAGTTGGTTTAAGGCG CAAGACTGTA chrXIII:168638-168948 + 59 1.64e-06 TCACTCTCGG TAGCCAAGTTGGTTTAAGGCG CAAGACTGTA chrX:354076-354176 + 49 1.64e-06 TCACTCTCGG TAGCCAAGTTGGTTTAAGGCG CAAGACTGTA chrXIII:837754-838138 + 39 1.64e-06 TGACTCTCGG TAGCCAAGTTGGTTTAAGGCG CAAGACTGTA chrXI:27-232 - 68 2.11e-06 GGGAGTGGTA TGGTTGAGTGGGGCAGGGTAA CGAGTGGAGA chrII:235610-235966 - 8 3.80e-06 GTGGTAAAGC TGGTTCAGCTGCTAAAGCTTC TCAATCT chrXV:160275-160631 + 9 4.25e-06 ACTAATGG TAGCTTAACTGGCAATGGCCA GTCACCGTGC chrXII:489313-489514 + 35 5.01e-06 CGATCAACTG TAGTTAAGCTGGTAAGAGCCT GACCGAGTAG chrIV:222000-222278 + 29 9.23e-06 GGAAAGGTAC TGGTGAAATGAGATAAGGGTG TACGGGTGTG chrXVI:188670-188889 + 14 9.69e-06 GAAGGAGAAC TGGTGTAGAGGTTTCCGGTCT TAATGGACTT chrX:538384-538484 + 71 1.76e-05 TTGGTTCCGT TGGCGTAATGGTAACGCGTCT CCCTCCTAA chrXIII:145920-146240 - 69 3.41e-05 TATAGTGTAC TGGTGCTATGGTGTATGGTGT ATGGTGTATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCBAGTKGKTWAAGSSHH MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:602191-602443 1.2e-11 51_[+1]_28 chrXIV:569789-570054 1.2e-11 41_[-1]_38 chrIV:667868-668245 1.2e-11 46_[-1]_33 chrXVI:880185-880523 1.2e-11 37_[-1]_42 chrV:551199-551490 1.2e-11 36_[-1]_43 chrXII:734666-734959 1.2e-11 46_[+1]_33 chrIX:183321-183682 1.2e-11 34_[-1]_45 chrIX:210510-210918 1.2e-11 7_[+1]_72 chrXVI:819349-819691 1.2e-11 65_[+1]_14 chrIII:295334-295634 8.7e-11 56_[+1]_23 chrVIII:116014-116343 8.7e-11 23_[-1]_56 chrIX:174883-175262 8.7e-11 15_[+1]_64 chrXV:353901-354270 8.7e-11 50_[-1]_29 chrIV:434059-434517 8.7e-11 70_[-1]_9 chrX:59020-59120 8.7e-11 23_[-1]_56 chrXIV:560577-560943 8.7e-11 27_[-1]_52 chrIV:1150704-1151104 1.6e-10 59_[-1]_20 chrVI:191366-191779 1.6e-10 63_[-1]_16 chrXII:784206-784518 1.6e-10 48_[+1]_31 chrVII:561479-561911 2e-10 70_[-1]_9 chrXIII:259068-259419 2e-10 18_[-1]_61 chrIV:437544-437958 2e-10 77_[+1]_2 chrV:86446-86771 2e-10 52_[+1]_27 chrXII:167852-168184 2e-10 29_[-1]_50 chrIV:1305476-1305814 2e-10 41_[+1]_38 chrII:226911-227329 2e-10 11_[+1]_68 chrXII:731922-732246 2.9e-10 62_[+1]_17 chrX:617748-617848 2.9e-10 58_[+1]_21 chrXII:592410-592791 2.9e-10 41_[-1]_38 chrIII:227779-228149 3.5e-10 34_[+1]_45 chrXV:854046-854418 7.2e-10 49_[-1]_30 chrI:166089-166447 7.2e-10 55_[+1]_24 chrXII:214783-215120 7.2e-10 26_[-1]_53 chrVII:794247-794574 7.2e-10 63_[+1]_16 chrV:311913-312258 7.2e-10 32_[-1]_47 chrXIV:102547-102859 1.2e-09 69_[+1]_10 chrIII:127570-127865 1.2e-09 55_[+1]_24 chrXVI:810504-810857 1.2e-09 52_[+1]_27 chrXII:975883-976197 1.2e-09 38_[-1]_41 chrXIV:726076-726383 2.5e-09 10_[-1]_69 chrIV:410225-410526 2.5e-09 60_[+1]_19 chrX:424392-424492 2.5e-09 [-1]_79 chrII:9399-9749 2.5e-09 65_[+1]_14 chrVI:204830-205144 2.5e-09 31_[-1]_48 chrXI:219730-220053 2.5e-09 60_[+1]_19 chrVII:774185-774539 2.5e-09 43_[+1]_36 chrIV:519578-519876 2.5e-09 72_[+1]_7 chrVII:857300-857649 5.7e-09 39_[-1]_40 chrXII:628213-628627 5.7e-09 19_[+1]_60 chrVII:205359-205697 5.7e-09 49_[+1]_30 chrXIII:504725-505152 5.7e-09 13_[+1]_66 chrIV:1461611-1462043 5.7e-09 24_[-1]_55 chrII:36260-36535 1.7e-08 57_[+1]_22 chrVI:157817-158173 1.7e-08 34_[-1]_45 chrXVI:560051-560467 1.7e-08 52_[-1]_27 chrVIII:358326-358783 1.7e-08 37_[-1]_42 chrVII:440480-441081 1.7e-08 49_[-1]_30 chrXVI:622461-622804 1.7e-08 21_[-1]_58 chrVII:115323-115692 1.9e-08 37_[+1]_42 chrV:438546-438856 2.7e-08 55_[+1]_24 chrXI:379518-379812 2.7e-08 71_[+1]_8 chrX:378191-378291 2.7e-08 45_[+1]_34 chrXIII:420494-420828 2.7e-08 22_[-1]_57 chrVIII:85228-85523 2.7e-08 18_[-1]_61 chrVII:823309-823656 2.7e-08 56_[+1]_23 chrXIII:372364-372684 2.7e-08 16_[-1]_63 chrXI:308080-308343 2.7e-08 28_[-1]_51 chrIV:1352374-1352697 4.6e-08 25_[-1]_54 chrV:435670-435985 4.6e-08 19_[-1]_60 chrXI:202841-203161 4.6e-08 54_[+1]_25 chrIX:300146-300499 4.6e-08 [-1]_79 chrXVI:581912-582296 4.6e-08 14_[+1]_65 chrXIII:480465-480848 4.6e-08 59_[-1]_20 chrVII:122127-122471 4.6e-08 26_[+1]_53 chrXI:490804-491135 5.1e-08 55_[+1]_24 chrXII:374189-374602 5.1e-08 16_[+1]_63 chrX:233758-233858 5.1e-08 76_[+1]_3 chrV:492246-492570 5.1e-08 38_[-1]_41 chrIV:884219-884542 1.1e-07 37_[+1]_42 chrIV:1175668-1176071 2.3e-07 16_[+1]_63 chrX:390935-391035 2.3e-07 36_[-1]_43 chrX:422751-422851 2.3e-07 40_[+1]_39 chrX:531653-531753 2.7e-07 8_[+1]_71 chrIV:83400-83701 2.7e-07 54_[+1]_25 chrIV:992641-992977 2.7e-07 79_[+1] chrXVI:860212-860533 2.7e-07 63_[+1]_16 chrVI:162060-162365 2.7e-07 72_[+1]_7 chrVII:845485-845853 2.7e-07 36_[+1]_43 chrVII:930895-931196 2.7e-07 [-1]_79 chrXVI:572097-572476 2.7e-07 39_[+1]_40 chrXV:281988-282336 2.7e-07 58_[+1]_21 chrIII:142635-142940 2.7e-07 6_[-1]_73 chrXIII:183815-184105 2.7e-07 30_[-1]_49 chrXV:300900-301354 5.4e-07 26_[+1]_53 chrXII:92375-92786 5.4e-07 24_[+1]_55 chrVIII:388795-389179 5.4e-07 30_[-1]_49 chrXIV:567940-568324 5.4e-07 39_[+1]_40 chrVI:101224-101578 5.4e-07 31_[+1]_48 chrXIII:195955-196375 5.4e-07 27_[-1]_52 chrXV:464269-464656 5.4e-07 44_[+1]_35 chrII:326695-327047 1e-06 16_[-1]_63 chrIV:946145-946554 1.6e-06 19_[+1]_60 chrX:542832-542932 1.6e-06 44_[-1]_35 chrXIII:168638-168948 1.6e-06 58_[+1]_21 chrX:354076-354176 1.6e-06 48_[+1]_31 chrXIII:837754-838138 1.6e-06 38_[+1]_41 chrXI:27-232 2.1e-06 67_[-1]_12 chrII:235610-235966 3.8e-06 7_[-1]_72 chrXV:160275-160631 4.3e-06 8_[+1]_71 chrXII:489313-489514 5e-06 34_[+1]_45 chrIV:222000-222278 9.2e-06 28_[+1]_51 chrXVI:188670-188889 9.7e-06 13_[+1]_66 chrX:538384-538484 1.8e-05 70_[+1]_9 chrXIII:145920-146240 3.4e-05 68_[-1]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCBAGTKGKTWAAGSSHH MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCCBAGTKGKTWAAGSSHH width=21 seqs=114 chrXIV:602191-602443 ( 52) TGGCCCAGTTGGTTAAGGCAC 1 chrXIV:569789-570054 ( 42) TGGCCCAGTTGGTTAAGGCAC 1 chrIV:667868-668245 ( 47) TGGCCCAGTTGGTTAAGGCAC 1 chrXVI:880185-880523 ( 38) TGGCCCAGTTGGTTAAGGCAC 1 chrV:551199-551490 ( 37) TGGCCCAGTTGGTTAAGGCAC 1 chrXII:734666-734959 ( 47) TGGCCCAGTTGGTTAAGGCAC 1 chrIX:183321-183682 ( 35) TGGCCCAGTTGGTTAAGGCAC 1 chrIX:210510-210918 ( 8) TGGCCCAGTTGGTTAAGGCAC 1 chrXVI:819349-819691 ( 66) TGGCCCAGTTGGTTAAGGCAC 1 chrIII:295334-295634 ( 57) TGGCCAAGTTGGTAAGGCGCC 1 chrVIII:116014-116343 ( 24) TGGCCAAGTTGGTAAGGCGCC 1 chrIX:174883-175262 ( 16) TGGCCAAGTTGGTAAGGCGCC 1 chrXV:353901-354270 ( 51) TGGCCAAGTTGGTAAGGCGCC 1 chrIV:434059-434517 ( 71) TGGCCAAGTTGGTAAGGCGCC 1 chrX:59020-59120 ( 24) TGGCCAAGTTGGTAAGGCGCC 1 chrXIV:560577-560943 ( 28) TGGCCAAGTTGGTAAGGCGCC 1 chrIV:1150704-1151104 ( 60) TGGCCGAGTGGTTAAGGCGAT 1 chrVI:191366-191779 ( 64) TGGCCGAGTGGTTAAGGCGAT 1 chrXII:784206-784518 ( 49) TGGCCGAGTGGTTAAGGCGAT 1 chrVII:561479-561911 ( 71) TGGCCGAGTGGTTAAGGCGAA 1 chrXIII:259068-259419 ( 19) TGGCCGAGTGGTTAAGGCGAA 1 chrIV:437544-437958 ( 78) TGGCCGAGTGGTTAAGGCGAA 1 chrV:86446-86771 ( 53) TGGCCGAGTGGTTAAGGCGAA 1 chrXII:167852-168184 ( 30) TGGCCGAGTGGTTAAGGCGAA 1 chrIV:1305476-1305814 ( 42) TGGCCGAGTGGTTAAGGCGAA 1 chrII:226911-227329 ( 12) TGGCCGAGTGGTTAAGGCGAA 1 chrXII:731922-732246 ( 63) TGGCCGAGTGGTTTAAGGCGT 1 chrX:617748-617848 ( 59) TGGCCGAGTGGTTTAAGGCGT 1 chrXII:592410-592791 ( 42) TGGCCGAGTGGTTTAAGGCGT 1 chrIII:227779-228149 ( 35) TGGCCGAGTGGTTAAGGCGAG 1 chrXV:854046-854418 ( 50) TGGCGCAGTTGGTAGCGCGCT 1 chrI:166089-166447 ( 56) TGGCGCAGTTGGTAGCGCGCT 1 chrXII:214783-215120 ( 27) TGGCGCAGTTGGTAGCGCGCT 1 chrVII:794247-794574 ( 64) TGGCGCAGTTGGTAGCGCGCT 1 chrV:311913-312258 ( 33) TGGCGCAGTTGGTAGCGCGCT 1 chrXIV:102547-102859 ( 70) TGGCCAAGTTGGTTAAGGCGT 1 chrIII:127570-127865 ( 56) TGGCCAAGTTGGTTAAGGCGT 1 chrXVI:810504-810857 ( 53) TGGCCAAGTTGGTTAAGGCGT 1 chrXII:975883-976197 ( 39) TGGCCAAGTTGGTTAAGGCGT 1 chrXIV:726076-726383 ( 11) TGGCCGAGTGGTCTAAGGCGG 1 chrIV:410225-410526 ( 61) TGGCGTAGTCGGTAGCGCGCT 1 chrX:424392-424492 ( 1) TGGCCGAGTGGTCTAAGGCGG 1 chrII:9399-9749 ( 66) TGGCCGAGTGGTCTAAGGCGG 1 chrVI:204830-205144 ( 32) TGGCGTAGTCGGTAGCGCGCT 1 chrXI:219730-220053 ( 61) TGGCGTAGTCGGTAGCGCGCT 1 chrVII:774185-774539 ( 44) TGGCGTAGTCGGTAGCGCGCT 1 chrIV:519578-519876 ( 73) TGGCCGAGTGGTCTAAGGCGG 1 chrVII:857300-857649 ( 40) TGGCCGAGCGGTCTAAGGCGC 1 chrXII:628213-628627 ( 20) TGGCCGAGCGGTCTAAGGCGC 1 chrVII:205359-205697 ( 50) TGGCCGAGCGGTCTAAGGCGC 1 chrXIII:504725-505152 ( 14) TGGCCGAGCGGTCTAAGGCGC 1 chrIV:1461611-1462043 ( 25) TGGCCGAGCGGTCTAAGGCGC 1 chrII:36260-36535 ( 58) TAGCTCAGTTGGGAGAGCGCC 1 chrVI:157817-158173 ( 35) TAGCTCAGTTGGGAGAGCGCC 1 chrXVI:560051-560467 ( 53) TAGCTCAGTTGGGAGAGCGCC 1 chrVIII:358326-358783 ( 38) TAGCTCAGTTGGGAGAGCGCC 1 chrVII:440480-441081 ( 50) TAGCTCAGTTGGGAGAGCGCC 1 chrXVI:622461-622804 ( 22) TAGCTCAGTTGGGAGAGCGCC 1 chrVII:115323-115692 ( 38) TAGCTCAGTTGGTAGAGCGTT 1 chrV:438546-438856 ( 56) TGGTCTAGTCGGTTATGGCAT 1 chrXI:379518-379812 ( 72) TGGTCTAGTCGGTTATGGCAT 1 chrX:378191-378291 ( 46) TGGTCTAGTCGGTTATGGCAT 1 chrXIII:420494-420828 ( 23) TGGTCTAGTCGGTTATGGCAT 1 chrVIII:85228-85523 ( 19) TGGTCTAGTCGGTTATGGCAT 1 chrVII:823309-823656 ( 57) TGGTCTAGTCGGTTATGGCAT 1 chrXIII:372364-372684 ( 17) TGGTCTAGTCGGTTATGGCAT 1 chrXI:308080-308343 ( 29) TGGTCTAGTCGGTTATGGCAT 1 chrIV:1352374-1352697 ( 26) TGGCGCAATCGGTAGCGCGTA 1 chrV:435670-435985 ( 20) TGGCGCAATCGGTAGCGCGTA 1 chrXI:202841-203161 ( 55) TGGCGCAATCGGTAGCGCGTA 1 chrIX:300146-300499 ( 1) TGGCGCAATCGGTAGCGCGTA 1 chrXVI:581912-582296 ( 15) TGGCGCAATCGGTAGCGCGTA 1 chrXIII:480465-480848 ( 60) TGGCGCAATCGGTAGCGCGTA 1 chrVII:122127-122471 ( 27) TGGCGCAATCGGTAGCGCGTA 1 chrXI:490804-491135 ( 56) TGGCCCAATGGTCACGGCGTC 1 chrXII:374189-374602 ( 17) TGGCCCAATGGTCACGGCGTC 1 chrX:233758-233858 ( 77) TGGCCCAATGGTCACGGCGTC 1 chrV:492246-492570 ( 39) TGGCCCAATGGTCACGGCGTC 1 chrIV:884219-884542 ( 38) TAGCTCAGTGGTTAGAGCTTC 1 chrIV:1175668-1176071 ( 17) TAGCTCAGTAGGAAGAGCGTC 1 chrX:390935-391035 ( 37) TAGCTCAGTAGGAAGAGCGTC 1 chrX:422751-422851 ( 41) TAGCTCAGTAGGAAGAGCGTC 1 chrX:531653-531753 ( 9) TGGTTTAGTGGTAAAATCCAA 1 chrIV:83400-83701 ( 55) TGGTTTAGTGGTAAAATCCAA 1 chrIV:992641-992977 ( 80) TGGTTTAGTGGTAAAATCCAA 1 chrXVI:860212-860533 ( 64) TGGTTTAGTGGTAAAATCCAA 1 chrVI:162060-162365 ( 73) TGGTTTAGTGGTAAAATCCAA 1 chrVII:845485-845853 ( 37) TGGTTTAGTGGTAAAATCCAA 1 chrVII:930895-931196 ( 1) TGGTTTAGTGGTAAAATCCAA 1 chrXVI:572097-572476 ( 40) TGGTTTAGTGGTAAAATCCAA 1 chrXV:281988-282336 ( 59) TGGTTTAGTGGTAAAATCCAA 1 chrIII:142635-142940 ( 7) TGGTTTAGTGGTAAAATCCAA 1 chrXIII:183815-184105 ( 31) TGGTTTAGTGGTAAAATCCAA 1 chrXV:300900-301354 ( 27) TGGTCTAGTGGTATGATTCTC 1 chrXII:92375-92786 ( 25) TGGTCTAGTGGTATGATTCTC 1 chrVIII:388795-389179 ( 31) TGGTCTAGTGGTATGATTCTC 1 chrXIV:567940-568324 ( 40) TGGTCTAGTGGTATGATTCTC 1 chrVI:101224-101578 ( 32) TGGTCTAGTGGTATGATTCTC 1 chrXIII:195955-196375 ( 28) TGGTCTAGTGGTATGATTCTC 1 chrXV:464269-464656 ( 45) TGGTCTAGTGGTATGATTCTC 1 chrII:326695-327047 ( 17) TGGTCCAGTGGTTCAAGACGT 1 chrIV:946145-946554 ( 20) TAGCCAAGTTGGTTTAAGGCG 1 chrX:542832-542932 ( 45) TAGCCAAGTTGGTTTAAGGCG 1 chrXIII:168638-168948 ( 59) TAGCCAAGTTGGTTTAAGGCG 1 chrX:354076-354176 ( 49) TAGCCAAGTTGGTTTAAGGCG 1 chrXIII:837754-838138 ( 39) TAGCCAAGTTGGTTTAAGGCG 1 chrXI:27-232 ( 68) TGGTTGAGTGGGGCAGGGTAA 1 chrII:235610-235966 ( 8) TGGTTCAGCTGCTAAAGCTTC 1 chrXV:160275-160631 ( 9) TAGCTTAACTGGCAATGGCCA 1 chrXII:489313-489514 ( 35) TAGTTAAGCTGGTAAGAGCCT 1 chrIV:222000-222278 ( 29) TGGTGAAATGAGATAAGGGTG 1 chrXVI:188670-188889 ( 14) TGGTGTAGAGGTTTCCGGTCT 1 chrX:538384-538484 ( 71) TGGCGTAATGGTAACGCGTCT 1 chrXIII:145920-146240 ( 69) TGGTGCTATGGTGTATGGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCBAGTKGKTWAAGSSHH MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 47435 bayes= 10.3788 E= 2.2e-333 -1348 -1348 -1348 163 -103 -1348 225 -1348 -1348 -1348 249 -1348 -1348 200 -1348 -16 -1348 175 -2 -50 -103 95 25 -16 162 -1348 -1348 -520 -129 -1348 229 -1348 -520 -134 -1348 151 -361 -9 136 12 -520 -1348 248 -1348 -1348 -434 164 44 -68 -53 -134 91 80 -334 -1348 39 91 -175 75 -288 75 -25 30 -188 -261 -434 214 -103 -520 159 115 -239 -1348 142 142 -261 12 61 -17 -56 -44 109 -88 -16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCBAGTKGKTWAAGSSHH MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 114 E= 2.2e-333 0.000000 0.000000 0.000000 1.000000 0.157895 0.000000 0.842105 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.710526 0.000000 0.289474 0.000000 0.596491 0.175439 0.228070 0.157895 0.342105 0.210526 0.289474 0.991228 0.000000 0.000000 0.008772 0.131579 0.000000 0.868421 0.000000 0.008772 0.070175 0.000000 0.921053 0.026316 0.166667 0.456140 0.350877 0.008772 0.000000 0.991228 0.000000 0.000000 0.008772 0.552632 0.438596 0.201754 0.122807 0.070175 0.605263 0.561404 0.017544 0.000000 0.421053 0.605263 0.052632 0.298246 0.043860 0.543860 0.149123 0.219298 0.087719 0.052632 0.008772 0.780702 0.157895 0.008772 0.535088 0.394737 0.061404 0.000000 0.473684 0.473684 0.052632 0.350877 0.271930 0.157895 0.219298 0.236842 0.377193 0.096491 0.289474 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCBAGTKGKTWAAGSSHH MEME-1 regular expression -------------------------------------------------------------------------------- TGG[CT][CT][CTG]AGT[GT]G[GT][TA][AT][AG][AG]G[CG][CG][ACT][CTA] -------------------------------------------------------------------------------- Time 345.51 secs. ******************************************************************************** ******************************************************************************** MOTIF SGGRDTCGAACCSVKGAYCYYMNGRTTA MEME-2 width = 28 sites = 47 llr = 1002 E-value = 4.0e-193 ******************************************************************************** -------------------------------------------------------------------------------- Motif SGGRDTCGAACCSVKGAYCYYMNGRTTA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :2:54:::aa::13:37:::132:5:17 pos.-specific C 3:::1:8:::a8641::5744533111: probability G 67a53::a::::33471:::::274:22 matrix T 1:::2a2::::2:15:2526423::961 bits 2.5 * * * 2.2 * * * 2.0 * * * 1.7 * ****** Relative 1.5 * ******* * * Entropy 1.2 ** ******* * * * (30.8 bits) 1.0 **** ******** * ** * * 0.7 **** ******** * *** * * 0.5 **** ******** ******** ***** 0.2 **** ***************** ***** 0.0 ---------------------------- Multilevel GGGGATCGAACCCCTGATCTTCCGATTA consensus CA AG GAGATC CCATCG G sequence G A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRDTCGAACCSVKGAYCYYMNGRTTA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------------- chrXIV:569789-570054 + 6 2.24e-14 TCTAG CGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrIV:667868-668245 + 11 2.24e-14 TGGTCTCTAG CGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrXVI:880185-880523 + 2 2.24e-14 G CGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrV:551199-551490 + 1 2.24e-14 . CGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrIX:210510-210918 - 37 2.24e-14 TGGTCTCTAG CGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrV:138498-138856 - 73 3.80e-13 . GGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrII:405709-406100 - 58 3.80e-13 CACTCACGAT GGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrXIII:131701-132059 + 5 3.80e-13 CGAT GGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrVII:405305-405658 - 73 3.80e-13 . GGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrVII:828536-828961 + 35 3.80e-13 CACTCACGAT GGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrX:374298-374398 + 59 3.80e-13 CACTCACGAT GGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrIV:1017001-1017451 + 41 6.02e-13 CTCCGAAGCG GGGAGTCGAACCCCGGTCTCCACGGTGA GAACGTGATG chrVII:541635-542117 - 58 6.02e-13 CTCCGATACG GGGAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrVII:328397-328885 - 26 6.02e-13 CTCCGATACG GGGAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrV:487205-487537 + 20 6.02e-13 CTCCGATACG GGGAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrXI:140847-141269 + 20 6.02e-13 CTCCGATACG GGGAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrXVI:581912-582296 - 43 8.11e-13 AGCCCTGTAG GGGGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrXIII:480465-480848 + 25 8.11e-13 AGCCCTGTAG GGGGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrVII:122127-122471 - 55 8.11e-13 AGCCCTGTAG GGGGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrX:531653-531753 - 35 2.56e-11 TGCGCAAGCC CGGAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrVII:845485-845853 - 63 2.56e-11 TGCGCAAGCC CGGAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrXVI:572097-572476 - 66 2.56e-11 GCAAGCC CGGAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrIX:174883-175262 - 44 2.86e-11 TGCTTCCAAT CGGATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrXV:353901-354270 + 16 2.86e-11 TGCTTCCAAT CGGATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrIV:434059-434517 + 36 2.86e-11 TGCTTCCAAT CGGATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrII:266227-266656 - 22 2.86e-11 TGCTTCCAAT CGGATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrXV:854046-854418 + 15 3.56e-11 TGGACGCAAC CGGAATCGAACCGATGACCTCTTCCTTG CAAGGGAAGC chrIV:1175668-1176071 - 45 1.81e-10 TGCTCCAGGG GAGGTTCGAACTCTCGACCTTCAGATTA TGAGACTGAC chrX:390935-391035 + 2 1.81e-10 G GAGGTTCGAACTCTCGACCTTCAGATTA TGAGACTGAC chrX:422751-422851 - 69 1.81e-10 AGGG GAGGTTCGAACTCTCGACCTTCAGATTA TGAGACTGAC chrXV:438470-438937 - 48 3.45e-10 CTCCTCATAG GGGGCTCGAACCCCTGACATTTCGGTAT CCTTGCTTAA chrXVI:769004-769463 + 34 3.45e-10 CTCCTCATAG GGGGCTCGAACCCCTGACATTTCGGTAT CCTTGCTTAA chrXIV:96099-96463 + 20 3.77e-10 TGAGCGGTAC GAGAATCGAACCCGTGTCCCCACCTTGG AAGGGTGGGA chrIV:488552-489038 + 62 9.65e-10 TGATCCAACC GAGGTTCGAACTCGGGATCTTCGCCGTG TAAAGGCGAC chrIV:1075352-1075690 + 11 1.44e-09 TGTTCCAACC GAGGATCGAACTCGGGACCTTTGCCGTG TGAAGGCAAC chrXII:975883-976197 + 3 1.56e-09 GT GAGGGTTGAACTCACGATCTTGCGATTA ACAGTCGCAC chrXIII:808113-808489 + 5 1.97e-09 CACC CGGATTCGAACTGGGGTTGTTCGGATCA GAACCGAAAG chrIV:946145-946554 - 64 3.82e-09 CTCCCGGGG GCGAGTCGAACGCCCGATCTCAAGATTT CGTAGTGATA chrVII:774185-774539 - 72 4.40e-09 C CGGAATCGAACCGGAGACCTCTCCCATG CTAAGGGAGC chrIV:1095181-1095626 + 27 7.11e-09 TGCGAACTCT GTGGATCGAACACAGGACCTCCAGATAT CTTGACCAAA chrXII:374189-374602 - 45 1.12e-08 CTTCCCCGCC AGGACTTGAACCTGGAATCTTCTGGTTC GTAGCCAGAC chrV:492246-492570 + 4 1.12e-08 GCC AGGACTTGAACCTGGAATCTTCTGGTTC GTAGCCAGAC chrVII:706978-707339 + 10 1.35e-08 GCTCGCACT CAGGATCGAACTAAGGACCAACAGATTT GCAATCTGCT chrIX:324144-324518 + 32 2.92e-08 CTCCGCGACG GGGAATTGAACCCCGATCTGGCACGCGA CAAGCGCCCA chrVII:319628-319975 - 64 4.52e-08 GCCATCTCC TAGAATCGAACCAGGGTTTCATCGGCCA CAACGATGTG chrXIII:362921-363247 - 64 4.52e-08 GCCATCTCC TAGAATCGAACCAGGGTTTCATCGGCCA CAACGATGTG chrVII:110479-110877 + 7 4.52e-08 ATCTCC TAGAATCGAACCAGGGTTTCATCGGCCA CAACGATGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRDTCGAACCSVKGAYCYYMNGRTTA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:569789-570054 2.2e-14 5_[+2]_67 chrIV:667868-668245 2.2e-14 10_[+2]_62 chrXVI:880185-880523 2.2e-14 1_[+2]_71 chrV:551199-551490 2.2e-14 [+2]_72 chrIX:210510-210918 2.2e-14 36_[-2]_36 chrV:138498-138856 3.8e-13 72_[-2] chrII:405709-406100 3.8e-13 57_[-2]_15 chrXIII:131701-132059 3.8e-13 4_[+2]_68 chrVII:405305-405658 3.8e-13 72_[-2] chrVII:828536-828961 3.8e-13 34_[+2]_38 chrX:374298-374398 3.8e-13 58_[+2]_14 chrIV:1017001-1017451 6e-13 40_[+2]_32 chrVII:541635-542117 6e-13 57_[-2]_15 chrVII:328397-328885 6e-13 25_[-2]_47 chrV:487205-487537 6e-13 19_[+2]_53 chrXI:140847-141269 6e-13 19_[+2]_53 chrXVI:581912-582296 8.1e-13 42_[-2]_30 chrXIII:480465-480848 8.1e-13 24_[+2]_48 chrVII:122127-122471 8.1e-13 54_[-2]_18 chrX:531653-531753 2.6e-11 34_[-2]_38 chrVII:845485-845853 2.6e-11 62_[-2]_10 chrXVI:572097-572476 2.6e-11 65_[-2]_7 chrIX:174883-175262 2.9e-11 43_[-2]_29 chrXV:353901-354270 2.9e-11 15_[+2]_57 chrIV:434059-434517 2.9e-11 35_[+2]_37 chrII:266227-266656 2.9e-11 21_[-2]_51 chrXV:854046-854418 3.6e-11 14_[+2]_58 chrIV:1175668-1176071 1.8e-10 44_[-2]_28 chrX:390935-391035 1.8e-10 1_[+2]_71 chrX:422751-422851 1.8e-10 68_[-2]_4 chrXV:438470-438937 3.5e-10 47_[-2]_25 chrXVI:769004-769463 3.5e-10 33_[+2]_39 chrXIV:96099-96463 3.8e-10 19_[+2]_53 chrIV:488552-489038 9.7e-10 61_[+2]_11 chrIV:1075352-1075690 1.4e-09 10_[+2]_62 chrXII:975883-976197 1.6e-09 2_[+2]_70 chrXIII:808113-808489 2e-09 4_[+2]_68 chrIV:946145-946554 3.8e-09 63_[-2]_9 chrVII:774185-774539 4.4e-09 71_[-2]_1 chrIV:1095181-1095626 7.1e-09 26_[+2]_46 chrXII:374189-374602 1.1e-08 44_[-2]_28 chrV:492246-492570 1.1e-08 3_[+2]_69 chrVII:706978-707339 1.4e-08 9_[+2]_63 chrIX:324144-324518 2.9e-08 31_[+2]_41 chrVII:319628-319975 4.5e-08 63_[-2]_9 chrXIII:362921-363247 4.5e-08 63_[-2]_9 chrVII:110479-110877 4.5e-08 6_[+2]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRDTCGAACCSVKGAYCYYMNGRTTA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SGGRDTCGAACCSVKGAYCYYMNGRTTA width=28 seqs=47 chrXIV:569789-570054 ( 6) CGGGATCGAACCGCTGATCCCCGCGTTA 1 chrIV:667868-668245 ( 11) CGGGATCGAACCGCTGATCCCCGCGTTA 1 chrXVI:880185-880523 ( 2) CGGGATCGAACCGCTGATCCCCGCGTTA 1 chrV:551199-551490 ( 1) CGGGATCGAACCGCTGATCCCCGCGTTA 1 chrIX:210510-210918 ( 37) CGGGATCGAACCGCTGATCCCCGCGTTA 1 chrV:138498-138856 ( 73) GGGGGTCGAACCCATAATCTTCTGATTA 1 chrII:405709-406100 ( 58) GGGGGTCGAACCCATAATCTTCTGATTA 1 chrXIII:131701-132059 ( 5) GGGGGTCGAACCCATAATCTTCTGATTA 1 chrVII:405305-405658 ( 73) GGGGGTCGAACCCATAATCTTCTGATTA 1 chrVII:828536-828961 ( 35) GGGGGTCGAACCCATAATCTTCTGATTA 1 chrX:374298-374398 ( 59) GGGGGTCGAACCCATAATCTTCTGATTA 1 chrIV:1017001-1017451 ( 41) GGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrVII:541635-542117 ( 58) GGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrVII:328397-328885 ( 26) GGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrV:487205-487537 ( 20) GGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrXI:140847-141269 ( 20) GGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrXVI:581912-582296 ( 43) GGGGCTCGAACCCCTAACCTTATGATTA 1 chrXIII:480465-480848 ( 25) GGGGCTCGAACCCCTAACCTTATGATTA 1 chrVII:122127-122471 ( 55) GGGGCTCGAACCCCTAACCTTATGATTA 1 chrX:531653-531753 ( 35) CGGAATCGAACCGGGGGCCCAACGATGG 1 chrVII:845485-845853 ( 63) CGGAATCGAACCGGGGGCCCAACGATGG 1 chrXVI:572097-572476 ( 66) CGGAATCGAACCGGGGGCCCAACGATGG 1 chrIX:174883-175262 ( 44) CGGATTTGAACCGATGATCTCCACATTA 1 chrXV:353901-354270 ( 16) CGGATTTGAACCGATGATCTCCACATTA 1 chrIV:434059-434517 ( 36) CGGATTTGAACCGATGATCTCCACATTA 1 chrII:266227-266656 ( 22) CGGATTTGAACCGATGATCTCCACATTA 1 chrXV:854046-854418 ( 15) CGGAATCGAACCGATGACCTCTTCCTTG 1 chrIV:1175668-1176071 ( 45) GAGGTTCGAACTCTCGACCTTCAGATTA 1 chrX:390935-391035 ( 2) GAGGTTCGAACTCTCGACCTTCAGATTA 1 chrX:422751-422851 ( 69) GAGGTTCGAACTCTCGACCTTCAGATTA 1 chrXV:438470-438937 ( 48) GGGGCTCGAACCCCTGACATTTCGGTAT 1 chrXVI:769004-769463 ( 34) GGGGCTCGAACCCCTGACATTTCGGTAT 1 chrXIV:96099-96463 ( 20) GAGAATCGAACCCGTGTCCCCACCTTGG 1 chrIV:488552-489038 ( 62) GAGGTTCGAACTCGGGATCTTCGCCGTG 1 chrIV:1075352-1075690 ( 11) GAGGATCGAACTCGGGACCTTTGCCGTG 1 chrXII:975883-976197 ( 3) GAGGGTTGAACTCACGATCTTGCGATTA 1 chrXIII:808113-808489 ( 5) CGGATTCGAACTGGGGTTGTTCGGATCA 1 chrIV:946145-946554 ( 64) GCGAGTCGAACGCCCGATCTCAAGATTT 1 chrVII:774185-774539 ( 72) CGGAATCGAACCGGAGACCTCTCCCATG 1 chrIV:1095181-1095626 ( 27) GTGGATCGAACACAGGACCTCCAGATAT 1 chrXII:374189-374602 ( 45) AGGACTTGAACCTGGAATCTTCTGGTTC 1 chrV:492246-492570 ( 4) AGGACTTGAACCTGGAATCTTCTGGTTC 1 chrVII:706978-707339 ( 10) CAGGATCGAACTAAGGACCAACAGATTT 1 chrIX:324144-324518 ( 32) GGGAATTGAACCCCGATCTGGCACGCGA 1 chrVII:319628-319975 ( 64) TAGAATCGAACCAGGGTTTCATCGGCCA 1 chrXIII:362921-363247 ( 64) TAGAATCGAACCAGGGTTTCATCGGCCA 1 chrVII:110479-110877 ( 7) TAGAATCGAACCAGGGTTTCATCGGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRDTCGAACCSVKGAYCYYMNGRTTA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 28 n= 43277 bayes= 9.47805 E= 4.0e-193 -292 94 164 -234 -46 -306 203 -392 -1220 -1220 249 -1220 60 -1220 152 -1220 25 -25 64 -75 -1220 -1220 -1220 163 -1220 222 -1220 -92 -1220 -1220 249 -1220 163 -1220 -1220 -1220 163 -1220 -1220 -1220 -1220 249 -1220 -1220 -392 215 -306 -92 -192 164 85 -292 -11 103 64 -234 -392 -74 119 54 -34 -1220 207 -1220 112 -1220 -148 -46 -1220 146 -1220 66 -292 207 -306 -75 -392 103 -306 89 -111 119 -306 40 -22 158 -306 -92 -46 94 -6 -34 -1220 85 194 -1220 66 -106 111 -392 -392 -106 -206 140 -234 -106 26 99 108 -206 -6 -160 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRDTCGAACCSVKGAYCYYMNGRTTA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 28 nsites= 47 E= 4.0e-193 0.042553 0.340426 0.553191 0.063830 0.234043 0.021277 0.723404 0.021277 0.000000 0.000000 1.000000 0.000000 0.489362 0.000000 0.510638 0.000000 0.382979 0.148936 0.276596 0.191489 0.000000 0.000000 0.000000 1.000000 0.000000 0.829787 0.000000 0.170213 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.021277 0.787234 0.021277 0.170213 0.085106 0.553191 0.319149 0.042553 0.297872 0.361702 0.276596 0.063830 0.021277 0.106383 0.404255 0.468085 0.255319 0.000000 0.744681 0.000000 0.702128 0.000000 0.063830 0.234043 0.000000 0.489362 0.000000 0.510638 0.042553 0.744681 0.021277 0.191489 0.021277 0.361702 0.021277 0.595745 0.148936 0.404255 0.021277 0.425532 0.276596 0.531915 0.021277 0.170213 0.234043 0.340426 0.170213 0.255319 0.000000 0.319149 0.680851 0.000000 0.510638 0.085106 0.382979 0.021277 0.021277 0.085106 0.042553 0.851064 0.063830 0.085106 0.212766 0.638298 0.680851 0.042553 0.170213 0.106383 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRDTCGAACCSVKGAYCYYMNGRTTA MEME-2 regular expression -------------------------------------------------------------------------------- [GC][GA]G[GA][AG]TCGAACC[CG][CAG][TG][GA][AT][TC]C[TC][TC][CA][CTA][GC][AG]T[TG]A -------------------------------------------------------------------------------- Time 653.28 secs. ******************************************************************************** ******************************************************************************** MOTIF DRATGTAYGGRTGTW MEME-3 width = 15 sites = 111 llr = 1309 E-value = 1.8e-153 ******************************************************************************** -------------------------------------------------------------------------------- Motif DRATGTAYGGRTGTW MEME-3 Description -------------------------------------------------------------------------------- Simplified A 447:::7:1:4:::4 pos.-specific C 1::::2:4:::::2: probability G 3431a:3:9a61912 matrix T 22:9:8:6:::9173 bits 2.5 * * 2.2 * * 2.0 * ** * 1.7 * ** * Relative 1.5 * ** * Entropy 1.2 ** ***** (17.0 bits) 1.0 *** ***** 0.7 *********** 0.5 ************* 0.2 *************** 0.0 --------------- Multilevel AGATGTATGGGTGTA consensus GAG GC A CT sequence T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DRATGTAYGGRTGTW MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chrXIII:296812-297140 - 39 9.08e-09 AAAAAGTTCT AGATGTATGGGTGTG CGGGTAATGC chrXI:666452-666791 + 40 1.88e-08 TTAGGGTTGT GGGTGTGTGGGTGTG GTGTGGGTGT chrXII:11063-11509 - 62 1.88e-08 GTGTGGGTGT GGGTGTGTGGGTGTG GTGTGGGTGT chrVI:4456-4956 - 48 1.88e-08 GTGTGGGTGT GGGTGTGTGGGTGTG GTGTGTGTGG chrIII:31-520 - 72 1.88e-08 GTGTGGGTGT GGGTGTGTGGGTGTG GTGTGTGGGT chrXII:932110-932453 + 35 2.55e-08 ACAGATGTAC GGATGTACGGATGTA CGGATGTATA chrVIII:382964-383321 + 8 3.39e-08 ATTTTCA TGATGTATGGGTGTA TCGGATGTTC chrIV:1355773-1355975 + 14 4.42e-08 AAAATACTAT AAATGTATGGGTGTA ATTTTAACCG chrV:305807-306159 - 51 9.16e-08 GTGGGCTTGT AAATGTGTGGGTGTA CAGTCCCGAT chrXII:5476-5885 - 82 1.09e-07 AAGA GAGTGTGTGGGTGTG TGGTGTGTGT chrXIII:225378-225689 - 61 1.32e-07 ATAAAAAATA GAATGTACGGATGTA ATGCACGGAT chrXV:33-236 - 2 1.32e-07 TGTGTGTGGG TGGTGTGTGGGTGTG G chrXII:1064888-1065330 + 33 1.32e-07 TGTGTGTGTG TGGTGTGTGGGTGTG GTGGGTGTGG chrVIII:562270-562610 + 75 1.32e-07 AGTGTGGGTG TGGTGTGTGGGTGTG GGTGTGTGTG chrXII:651010-651208 - 80 1.58e-07 CATGAG AAATGTGTGGGTGTT GAGATAATTG chrX:703307-703407 + 51 1.58e-07 AATAAATAGT GGATGCATGGGTGCT TCCACGCGTC chrII:592947-593252 + 35 1.90e-07 TGGAGTTCAA AGATGTATGGATGCA AGAAAAGAGG chrXV:79804-80084 + 53 1.90e-07 CACTTATTTA ATATGTACGGGTGTT TACATGGAGT chrVIII:125970-126266 - 33 1.90e-07 GTAAAGATGT AGGTGTACGGATGCA TTAACGTCTT chrII:415559-415835 + 35 1.90e-07 CTGGATGACA AAATGCATGGGTGTA AAAAAGGAAA chrIX:254283-254499 + 16 1.90e-07 GCGGCAATTA GAATGTGTGGGTGCG GAAGCTCGCC chrXVI:378707-378959 + 56 2.23e-07 ATGAGAACTC GAATGTACGGATGTT TTCTCTGAAT chrII:477081-477395 - 45 2.23e-07 CTGGGTGTAT AAATGTGTGGGTGCA ACATGAATGT chrXIII:224125-224324 + 15 2.62e-07 AATTTCAAAA AAATGTATGGATGTA AAATTCAGTA chrIII:163502-163834 + 28 2.62e-07 AGCCGCGGTT GGGTGCGTGGGTGCG GTAATTTAAC chrXII:262843-263040 - 73 2.62e-07 AAATTAACAT AAATGTATGGATGTA TTATTAAATG chrIV:229539-229733 - 67 2.62e-07 ATAATCCTTC TGATGTACGGATGTT TTGTGTAAGA chrV:396239-396525 - 46 2.62e-07 GGGTTCACAA AAGTGTACGGATGTA TACAACAGGG chrXI:108769-109032 - 70 3.08e-07 GGAGCCAACT AAATGTACGGATGTT GTAATGTGTT chrVII:149167-149479 + 44 3.08e-07 ATGTATGGGT GGGTGTATGGATGCT GTAAGCACAG chrXIII:145920-146240 - 53 3.08e-07 GTATGGTGTA TGGTGTATGGATGTA CAAAAATGCT chrIV:1525335-1525624 + 13 3.08e-07 GTGTGGTGTG GTGTGTGTGGGTGTG GTGTGGTGTG chrVIII:556674-557175 + 62 3.08e-07 GTGTGGGTGT GTGTGTGTGGGTGTG TGTGGGTGTG chrVII:555353-555651 - 57 3.49e-07 CAAACACCTT TAATGCACGGGTGTA AAAGGGATGT chrXIII:754462-754756 + 12 3.49e-07 ACGCTATTCT GGATGTATGGGGGTA TTTTATGTTT chrXVI:731969-732267 - 35 3.49e-07 CAACCATCCT AAAGGTATGGGTGTA CTGACGATGC chrXV:1028725-1029062 + 63 4.03e-07 TAAACAAATC AAATGTACGGATGCA CAATGGTAAA chrXII:241662-241968 - 41 4.56e-07 TTTACATTTT ATATGTACGGATGTA AAAAGGGAAA chrXIII:732064-732358 - 44 4.56e-07 CACACATGCG CGATGTGCGGATGTA TTATGTCTTG chrIV:130626-130923 + 24 4.56e-07 GAAAGCTATA AAATGTGCGGATGTT TGTATATGTC chrXV:678878-679146 + 47 4.56e-07 TGGGTCCACA ATATGTACGGATGTA TGGTCCCAAA chrXII:713179-713513 + 75 5.15e-07 TTTTTTATAC ATATGTACGGATGTG ATAGTCTGCA chrVIII:505861-506161 + 39 5.15e-07 TGTCTGGGTG AAATGTATGGATGCA TAATTGTCTC chrXV:94528-94802 - 19 6.57e-07 CCGAAGACAA TAATGCATGGGTGTT AATTCTATTT chrVII:254163-254506 + 62 6.57e-07 ACATCTTTCA ATATGCACGGGTGCA ACCTCAAATA chrX:607917-608017 - 31 6.57e-07 GGGTTAAAAA GGATGTATGGATGGA GGGTTGGCAT chrXII:818874-819149 - 37 6.57e-07 ACAATAATCA ATATGTACGGATGTT GGAAAGGTAT chrIV:1359371-1359757 - 81 6.57e-07 GTGCG TAATGTACGGATGTT TAATGTCTTT chrII:605776-606075 - 40 7.37e-07 GTGATGGTGA AGATGTACAGGTGTA AAACTGTCAG chrV:140518-140835 + 48 9.17e-07 CGGCATTGTA AAAGGTATGGGTGCT TTGTGCGTCC chrVII:726466-726736 - 52 9.17e-07 TATTTAAAAA TAGGGTATGGGTGTA TATAGGGTAT chrVII:534846-535227 + 17 9.17e-07 TGGGTTACAC AAATGCACGGATGCA TATATAAAAT chrXII:781506-781807 + 49 9.17e-07 GGGTTTATGA AAATGCACGGATGCA TTTTCTCTAG chrVII:788374-788703 + 40 1.12e-06 TGGGTTTAGA GTATGCACGGATGTT GTAAGGAATA chrXII:796468-796826 + 36 1.12e-06 TTATTATCCA GGAGGCACGGATGCA AAAGATAGAA chrXII:922172-922493 - 62 1.12e-06 GAGAATTGGA ATATGTACGGGTGTC AATTTCAAAC chrXIV:6577-6856 - 6 1.12e-06 TGTGATGGGT GTGGGTGTGGGTGTG TGGGT chrXVI:406240-406503 - 49 1.12e-06 TTGGAGGTGG AAAGGTACGGATGTT AAACTTCATA chrX:75404-75504 + 21 1.24e-06 TTTCAAATAG TGAGGTGTGGATGTA TAGAGGAATT chrV:85176-85418 - 52 1.24e-06 GAATACATCG AGGGGTATGGGTGGA TGATATCACT chrV:423150-423425 - 34 1.24e-06 TGGGTGTAGA AGGTGTACGGAGGTA AATATGCAGC chrIV:411311-411602 - 28 1.24e-06 TTTGGGTGCC CGGGGTGTGGGTGTT TGATTTGTTT chrVI:221802-222053 + 42 1.24e-06 TGGGTGTTAA AAATGTACGGGTGAA AAAAGTCTTA chrX:391788-391888 - 77 1.51e-06 CGCTCGCAG GGAGGTCTGGGTGTG GGGCGTGTGC chrXV:216296-216635 - 43 1.66e-06 CTGGGTTGAG GAAGGCGCGGGTGCT CGGATGTTCC chrXII:498542-498849 - 27 1.66e-06 ATTCCTTACA GGATGCACGGAGGTA AACAGGAAAG chrIV:358148-358351 + 49 1.66e-06 CCTTGTCAGA TAATGTATGGGTGGT GTGTACACCA chrIV:1401288-1401546 - 65 1.66e-06 AAAGGGTAAT ATATGTGTGGGTGGA AAATGATTGG chrV:53576-53905 - 28 1.84e-06 CGAACACCAA ATATGTGTGGGTGTC AAACAAAGAG chrIV:835804-836119 - 39 2.04e-06 TGTGCGGTTG CGGGGCGTGGGTGTG CGCGCCGTTG chrXIII:551405-551760 - 86 2.23e-06 . TAATGTATGGGTGCC AATATGTACT chrVII:438623-438871 + 60 2.23e-06 TAACGTTCCA AAATGTATGGATGGT AAGGTCTTTT chrIV:321738-321905 - 27 2.23e-06 AAATAAAGAT TGGTGTACGGAGGTA AAGGTATGAA chrXI:313316-313642 - 66 2.47e-06 TTATTCAACC AGATGTGCAGATGTA ACCAAAAACT chrIV:217191-217457 - 39 2.47e-06 TTATAGAATA AAATGTACGGGTTCA AAGCAGGGCC chrIV:1300969-1301293 - 27 2.47e-06 CAAACATCCA CAGTGCACGGATGTT TGAAGGAAAA chrXII:897760-897989 - 36 2.47e-06 TGGGTTTTTT GGAGGTACAGGTGTT GTAGAATTCT chrXV:161194-161355 + 21 2.69e-06 ATAGGAATCC CGATGTATGGGTTTG GTTGCCAGAA chrXV:1004158-1004330 + 52 2.97e-06 CGTATGTTAT GGGTGCAAGGGTGTT TTTTTTTTTT chrII:332335-332692 - 61 2.97e-06 TTGGGTTTAG AATTGTATGGGTGCA GCAAGGAAAT chrXV:1025797-1025964 - 45 3.25e-06 CAATTACACG TGATGAATGGGTGTT CAGCATATGT chrVIII:148989-149231 + 21 3.25e-06 TATAATCCAA TGGTGCATGGGTGAA AATGTATGGG chrIV:1450978-1451176 + 55 3.58e-06 TAAAATACAA ATATGTACAGGTGTT AATGTCTAAA chrXV:866604-866897 + 55 3.58e-06 AGCATTCTGG GTTTGTATGGGTGTT ACACCGGTTT chrII:604160-604443 - 49 3.92e-06 CGAATATGAA AAATGTACAGATGTG TAAATGTACG chrXII:1028217-1028530 - 74 4.30e-06 CCATACATTT TGGTGCATGGGTGAT ATTTTGTCTT chrIII:178375-178658 + 5 4.72e-06 AGTA AAATGTACAGATGTT TATTAAGTCC chrXIV:495244-495546 + 32 4.72e-06 AATTTTTAAA GGAGGTTTGGGTGTG TATAGTGTAC chrVII:310527-310849 - 47 5.13e-06 TGTGGGTCCC TGGTGTACAGATGTT ACATTGGTTA chrXIII:124377-124658 + 45 6.10e-06 TACATTTTAA TAATGTACGGATTTA ATAGCAGTCT chrVII:648994-649379 + 12 6.10e-06 TATGGGTTCT CGTTGTACGGATGTT TAAAATGTCC chrXVI:188670-188889 - 60 6.10e-06 CCATAGTAAC CGATGCATGGGTTTT AAAAGTCACG chrXV:505160-505455 - 61 6.63e-06 ATACCATATC ATATGTTTGGGTGTG ATAAGGTTCA chrIX:316151-316551 - 50 6.63e-06 GTTTGTAAAA TAATGTATGGGTTCT AGTCTGAAAA chrXV:968175-968343 + 59 7.20e-06 CAAAAGCGTG GGGTGCGTGGGCGTG CGCTGCTCGA chrIV:308059-308349 - 69 8.47e-06 TTGCCTGCAT ATATGTAAGGATGTA ACAGGAAATG chrX:651276-651376 - 49 9.16e-06 GAATAATTAT GGGTATATGGGTGTT GTTGTATAAA chrX:73416-73516 - 46 9.88e-06 CTTTTCAGTG TGGTGCAAGGATGTA CAATGATGTG chrIX:99680-99984 + 27 1.23e-05 TTTCATGAAT AAATGTACTGGTGTT ACATGGTGTA chrX:90109-90209 - 42 1.23e-05 GTATGGGTGA GAATGTCCAGGTGCA AATTGAAAAG chrIV:117189-117530 - 60 1.33e-05 ATGGGTGTAG ATATGTATGGGTCTG AGATTAATAC chrI:229302-229405 - 55 1.42e-05 TTATAACGCA GTATGTACAGGTGCC ATACGTACAG chrXVI:699979-700321 - 68 1.53e-05 TTTGAAGCTA TGGTGTGTGGGGGAT CACTTGTGGG chrXI:158267-158550 - 41 1.76e-05 TTTATTTCCA GTGTGCACGGGTTGA AATAAATGAA chrXV:281988-282336 + 20 1.88e-05 TCGCTTAAAT AGAGGAGTGGATGCT CAGGATAACA chrXV:978863-979090 + 11 2.01e-05 GTATACACAA GGATGAATGGGTTCT ACGACACCGC chrII:167953-168147 - 34 2.15e-05 CTGGTGAAAA ATATGTCTGGGTTTT AAAACACTGT chrV:362226-362437 - 68 2.46e-05 TATTGAAATA TATTGTATGGGTTTA AATTTCTTGG chrXVI:520222-520490 - 57 2.46e-05 TTTCCTCCGG CGAGGCCTGGGTGGA ACACTCAGGC chrXV:253875-254054 + 63 3.19e-05 TTTATACGCG CGGTGTACGGATTAA AAAAGTTTTG chrXIII:226053-226409 - 8 4.88e-05 AAACACATTA TAATGTGTAGAGGCA GTTCATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DRATGTAYGGRTGTW MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:296812-297140 9.1e-09 38_[-3]_47 chrXI:666452-666791 1.9e-08 39_[+3]_46 chrXII:11063-11509 1.9e-08 61_[-3]_24 chrVI:4456-4956 1.9e-08 47_[-3]_38 chrIII:31-520 1.9e-08 71_[-3]_14 chrXII:932110-932453 2.6e-08 34_[+3]_51 chrVIII:382964-383321 3.4e-08 7_[+3]_78 chrIV:1355773-1355975 4.4e-08 13_[+3]_72 chrV:305807-306159 9.2e-08 50_[-3]_35 chrXII:5476-5885 1.1e-07 81_[-3]_4 chrXIII:225378-225689 1.3e-07 60_[-3]_25 chrXV:33-236 1.3e-07 1_[-3]_84 chrXII:1064888-1065330 1.3e-07 32_[+3]_53 chrVIII:562270-562610 1.3e-07 74_[+3]_11 chrXII:651010-651208 1.6e-07 79_[-3]_6 chrX:703307-703407 1.6e-07 50_[+3]_35 chrII:592947-593252 1.9e-07 34_[+3]_51 chrXV:79804-80084 1.9e-07 52_[+3]_33 chrVIII:125970-126266 1.9e-07 32_[-3]_53 chrII:415559-415835 1.9e-07 34_[+3]_51 chrIX:254283-254499 1.9e-07 15_[+3]_70 chrXVI:378707-378959 2.2e-07 55_[+3]_30 chrII:477081-477395 2.2e-07 44_[-3]_41 chrXIII:224125-224324 2.6e-07 14_[+3]_71 chrIII:163502-163834 2.6e-07 27_[+3]_58 chrXII:262843-263040 2.6e-07 72_[-3]_13 chrIV:229539-229733 2.6e-07 66_[-3]_19 chrV:396239-396525 2.6e-07 45_[-3]_40 chrXI:108769-109032 3.1e-07 69_[-3]_16 chrVII:149167-149479 3.1e-07 43_[+3]_42 chrXIII:145920-146240 3.1e-07 52_[-3]_33 chrIV:1525335-1525624 3.1e-07 12_[+3]_73 chrVIII:556674-557175 3.1e-07 61_[+3]_24 chrVII:555353-555651 3.5e-07 56_[-3]_29 chrXIII:754462-754756 3.5e-07 11_[+3]_74 chrXVI:731969-732267 3.5e-07 34_[-3]_51 chrXV:1028725-1029062 4e-07 62_[+3]_23 chrXII:241662-241968 4.6e-07 40_[-3]_45 chrXIII:732064-732358 4.6e-07 43_[-3]_42 chrIV:130626-130923 4.6e-07 23_[+3]_62 chrXV:678878-679146 4.6e-07 46_[+3]_39 chrXII:713179-713513 5.1e-07 74_[+3]_11 chrVIII:505861-506161 5.1e-07 38_[+3]_47 chrXV:94528-94802 6.6e-07 18_[-3]_67 chrVII:254163-254506 6.6e-07 61_[+3]_24 chrX:607917-608017 6.6e-07 30_[-3]_55 chrXII:818874-819149 6.6e-07 36_[-3]_49 chrIV:1359371-1359757 6.6e-07 80_[-3]_5 chrII:605776-606075 7.4e-07 39_[-3]_46 chrV:140518-140835 9.2e-07 47_[+3]_38 chrVII:726466-726736 9.2e-07 51_[-3]_34 chrVII:534846-535227 9.2e-07 16_[+3]_69 chrXII:781506-781807 9.2e-07 48_[+3]_37 chrVII:788374-788703 1.1e-06 39_[+3]_46 chrXII:796468-796826 1.1e-06 35_[+3]_50 chrXII:922172-922493 1.1e-06 61_[-3]_24 chrXIV:6577-6856 1.1e-06 5_[-3]_80 chrXVI:406240-406503 1.1e-06 48_[-3]_37 chrX:75404-75504 1.2e-06 20_[+3]_65 chrV:85176-85418 1.2e-06 51_[-3]_34 chrV:423150-423425 1.2e-06 33_[-3]_52 chrIV:411311-411602 1.2e-06 27_[-3]_58 chrVI:221802-222053 1.2e-06 41_[+3]_44 chrX:391788-391888 1.5e-06 76_[-3]_9 chrXV:216296-216635 1.7e-06 42_[-3]_43 chrXII:498542-498849 1.7e-06 26_[-3]_59 chrIV:358148-358351 1.7e-06 48_[+3]_37 chrIV:1401288-1401546 1.7e-06 64_[-3]_21 chrV:53576-53905 1.8e-06 27_[-3]_58 chrIV:835804-836119 2e-06 38_[-3]_47 chrXIII:551405-551760 2.2e-06 85_[-3] chrVII:438623-438871 2.2e-06 59_[+3]_26 chrIV:321738-321905 2.2e-06 26_[-3]_59 chrXI:313316-313642 2.5e-06 65_[-3]_20 chrIV:217191-217457 2.5e-06 38_[-3]_47 chrIV:1300969-1301293 2.5e-06 26_[-3]_59 chrXII:897760-897989 2.5e-06 35_[-3]_50 chrXV:161194-161355 2.7e-06 20_[+3]_65 chrXV:1004158-1004330 3e-06 51_[+3]_34 chrII:332335-332692 3e-06 60_[-3]_25 chrXV:1025797-1025964 3.3e-06 44_[-3]_41 chrVIII:148989-149231 3.3e-06 20_[+3]_65 chrIV:1450978-1451176 3.6e-06 54_[+3]_31 chrXV:866604-866897 3.6e-06 54_[+3]_31 chrII:604160-604443 3.9e-06 48_[-3]_37 chrXII:1028217-1028530 4.3e-06 73_[-3]_12 chrIII:178375-178658 4.7e-06 4_[+3]_81 chrXIV:495244-495546 4.7e-06 31_[+3]_54 chrVII:310527-310849 5.1e-06 46_[-3]_39 chrXIII:124377-124658 6.1e-06 44_[+3]_41 chrVII:648994-649379 6.1e-06 11_[+3]_74 chrXVI:188670-188889 6.1e-06 59_[-3]_26 chrXV:505160-505455 6.6e-06 60_[-3]_25 chrIX:316151-316551 6.6e-06 49_[-3]_36 chrXV:968175-968343 7.2e-06 58_[+3]_27 chrIV:308059-308349 8.5e-06 68_[-3]_17 chrX:651276-651376 9.2e-06 48_[-3]_37 chrX:73416-73516 9.9e-06 45_[-3]_40 chrIX:99680-99984 1.2e-05 26_[+3]_59 chrX:90109-90209 1.2e-05 41_[-3]_44 chrIV:117189-117530 1.3e-05 59_[-3]_26 chrI:229302-229405 1.4e-05 54_[-3]_31 chrXVI:699979-700321 1.5e-05 67_[-3]_18 chrXI:158267-158550 1.8e-05 40_[-3]_45 chrXV:281988-282336 1.9e-05 19_[+3]_66 chrXV:978863-979090 2e-05 10_[+3]_75 chrII:167953-168147 2.2e-05 33_[-3]_52 chrV:362226-362437 2.5e-05 67_[-3]_18 chrXVI:520222-520490 2.5e-05 56_[-3]_29 chrXV:253875-254054 3.2e-05 62_[+3]_23 chrXIII:226053-226409 4.9e-05 7_[-3]_78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DRATGTAYGGRTGTW MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DRATGTAYGGRTGTW width=15 seqs=111 chrXIII:296812-297140 ( 39) AGATGTATGGGTGTG 1 chrXI:666452-666791 ( 40) GGGTGTGTGGGTGTG 1 chrXII:11063-11509 ( 62) GGGTGTGTGGGTGTG 1 chrVI:4456-4956 ( 48) GGGTGTGTGGGTGTG 1 chrIII:31-520 ( 72) GGGTGTGTGGGTGTG 1 chrXII:932110-932453 ( 35) GGATGTACGGATGTA 1 chrVIII:382964-383321 ( 8) TGATGTATGGGTGTA 1 chrIV:1355773-1355975 ( 14) AAATGTATGGGTGTA 1 chrV:305807-306159 ( 51) AAATGTGTGGGTGTA 1 chrXII:5476-5885 ( 82) GAGTGTGTGGGTGTG 1 chrXIII:225378-225689 ( 61) GAATGTACGGATGTA 1 chrXV:33-236 ( 2) TGGTGTGTGGGTGTG 1 chrXII:1064888-1065330 ( 33) TGGTGTGTGGGTGTG 1 chrVIII:562270-562610 ( 75) TGGTGTGTGGGTGTG 1 chrXII:651010-651208 ( 80) AAATGTGTGGGTGTT 1 chrX:703307-703407 ( 51) GGATGCATGGGTGCT 1 chrII:592947-593252 ( 35) AGATGTATGGATGCA 1 chrXV:79804-80084 ( 53) ATATGTACGGGTGTT 1 chrVIII:125970-126266 ( 33) AGGTGTACGGATGCA 1 chrII:415559-415835 ( 35) AAATGCATGGGTGTA 1 chrIX:254283-254499 ( 16) GAATGTGTGGGTGCG 1 chrXVI:378707-378959 ( 56) GAATGTACGGATGTT 1 chrII:477081-477395 ( 45) AAATGTGTGGGTGCA 1 chrXIII:224125-224324 ( 15) AAATGTATGGATGTA 1 chrIII:163502-163834 ( 28) GGGTGCGTGGGTGCG 1 chrXII:262843-263040 ( 73) AAATGTATGGATGTA 1 chrIV:229539-229733 ( 67) TGATGTACGGATGTT 1 chrV:396239-396525 ( 46) AAGTGTACGGATGTA 1 chrXI:108769-109032 ( 70) AAATGTACGGATGTT 1 chrVII:149167-149479 ( 44) GGGTGTATGGATGCT 1 chrXIII:145920-146240 ( 53) TGGTGTATGGATGTA 1 chrIV:1525335-1525624 ( 13) GTGTGTGTGGGTGTG 1 chrVIII:556674-557175 ( 62) GTGTGTGTGGGTGTG 1 chrVII:555353-555651 ( 57) TAATGCACGGGTGTA 1 chrXIII:754462-754756 ( 12) GGATGTATGGGGGTA 1 chrXVI:731969-732267 ( 35) AAAGGTATGGGTGTA 1 chrXV:1028725-1029062 ( 63) AAATGTACGGATGCA 1 chrXII:241662-241968 ( 41) ATATGTACGGATGTA 1 chrXIII:732064-732358 ( 44) CGATGTGCGGATGTA 1 chrIV:130626-130923 ( 24) AAATGTGCGGATGTT 1 chrXV:678878-679146 ( 47) ATATGTACGGATGTA 1 chrXII:713179-713513 ( 75) ATATGTACGGATGTG 1 chrVIII:505861-506161 ( 39) AAATGTATGGATGCA 1 chrXV:94528-94802 ( 19) TAATGCATGGGTGTT 1 chrVII:254163-254506 ( 62) ATATGCACGGGTGCA 1 chrX:607917-608017 ( 31) GGATGTATGGATGGA 1 chrXII:818874-819149 ( 37) ATATGTACGGATGTT 1 chrIV:1359371-1359757 ( 81) TAATGTACGGATGTT 1 chrII:605776-606075 ( 40) AGATGTACAGGTGTA 1 chrV:140518-140835 ( 48) AAAGGTATGGGTGCT 1 chrVII:726466-726736 ( 52) TAGGGTATGGGTGTA 1 chrVII:534846-535227 ( 17) AAATGCACGGATGCA 1 chrXII:781506-781807 ( 49) AAATGCACGGATGCA 1 chrVII:788374-788703 ( 40) GTATGCACGGATGTT 1 chrXII:796468-796826 ( 36) GGAGGCACGGATGCA 1 chrXII:922172-922493 ( 62) ATATGTACGGGTGTC 1 chrXIV:6577-6856 ( 6) GTGGGTGTGGGTGTG 1 chrXVI:406240-406503 ( 49) AAAGGTACGGATGTT 1 chrX:75404-75504 ( 21) TGAGGTGTGGATGTA 1 chrV:85176-85418 ( 52) AGGGGTATGGGTGGA 1 chrV:423150-423425 ( 34) AGGTGTACGGAGGTA 1 chrIV:411311-411602 ( 28) CGGGGTGTGGGTGTT 1 chrVI:221802-222053 ( 42) AAATGTACGGGTGAA 1 chrX:391788-391888 ( 77) GGAGGTCTGGGTGTG 1 chrXV:216296-216635 ( 43) GAAGGCGCGGGTGCT 1 chrXII:498542-498849 ( 27) GGATGCACGGAGGTA 1 chrIV:358148-358351 ( 49) TAATGTATGGGTGGT 1 chrIV:1401288-1401546 ( 65) ATATGTGTGGGTGGA 1 chrV:53576-53905 ( 28) ATATGTGTGGGTGTC 1 chrIV:835804-836119 ( 39) CGGGGCGTGGGTGTG 1 chrXIII:551405-551760 ( 86) TAATGTATGGGTGCC 1 chrVII:438623-438871 ( 60) AAATGTATGGATGGT 1 chrIV:321738-321905 ( 27) TGGTGTACGGAGGTA 1 chrXI:313316-313642 ( 66) AGATGTGCAGATGTA 1 chrIV:217191-217457 ( 39) AAATGTACGGGTTCA 1 chrIV:1300969-1301293 ( 27) CAGTGCACGGATGTT 1 chrXII:897760-897989 ( 36) GGAGGTACAGGTGTT 1 chrXV:161194-161355 ( 21) CGATGTATGGGTTTG 1 chrXV:1004158-1004330 ( 52) GGGTGCAAGGGTGTT 1 chrII:332335-332692 ( 61) AATTGTATGGGTGCA 1 chrXV:1025797-1025964 ( 45) TGATGAATGGGTGTT 1 chrVIII:148989-149231 ( 21) TGGTGCATGGGTGAA 1 chrIV:1450978-1451176 ( 55) ATATGTACAGGTGTT 1 chrXV:866604-866897 ( 55) GTTTGTATGGGTGTT 1 chrII:604160-604443 ( 49) AAATGTACAGATGTG 1 chrXII:1028217-1028530 ( 74) TGGTGCATGGGTGAT 1 chrIII:178375-178658 ( 5) AAATGTACAGATGTT 1 chrXIV:495244-495546 ( 32) GGAGGTTTGGGTGTG 1 chrVII:310527-310849 ( 47) TGGTGTACAGATGTT 1 chrXIII:124377-124658 ( 45) TAATGTACGGATTTA 1 chrVII:648994-649379 ( 12) CGTTGTACGGATGTT 1 chrXVI:188670-188889 ( 60) CGATGCATGGGTTTT 1 chrXV:505160-505455 ( 61) ATATGTTTGGGTGTG 1 chrIX:316151-316551 ( 50) TAATGTATGGGTTCT 1 chrXV:968175-968343 ( 59) GGGTGCGTGGGCGTG 1 chrIV:308059-308349 ( 69) ATATGTAAGGATGTA 1 chrX:651276-651376 ( 49) GGGTATATGGGTGTT 1 chrX:73416-73516 ( 46) TGGTGCAAGGATGTA 1 chrIX:99680-99984 ( 27) AAATGTACTGGTGTT 1 chrX:90109-90209 ( 42) GAATGTCCAGGTGCA 1 chrIV:117189-117530 ( 60) ATATGTATGGGTCTG 1 chrI:229302-229405 ( 55) GTATGTACAGGTGCC 1 chrXVI:699979-700321 ( 68) TGGTGTGTGGGGGAT 1 chrXI:158267-158550 ( 41) GTGTGCACGGGTTGA 1 chrXV:281988-282336 ( 20) AGAGGAGTGGATGCT 1 chrXV:978863-979090 ( 11) GGATGAATGGGTTCT 1 chrII:167953-168147 ( 34) ATATGTCTGGGTTTT 1 chrV:362226-362437 ( 68) TATTGTATGGGTTTA 1 chrXVI:520222-520490 ( 57) CGAGGCCTGGGTGGA 1 chrXV:253875-254054 ( 63) CGGTGTACGGATTAA 1 chrXIII:226053-226409 ( 8) TAATGTGTAGAGGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DRATGTAYGGRTGTW MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 50999 bayes= 10.5079 E= 1.8e-153 36 -113 70 -58 20 -1344 131 -77 105 -1344 74 -316 -1344 -1344 -30 141 -516 -1344 248 -1344 -357 16 -1344 126 109 -230 56 -416 -357 119 -1344 82 -184 -1344 234 -516 -1344 -1344 249 -1344 30 -1344 176 -1344 -1344 -430 -172 154 -1344 -430 234 -184 -284 28 -149 107 42 -230 22 1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DRATGTAYGGRTGTW MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 111 E= 1.8e-153 0.414414 0.081081 0.288288 0.216216 0.369369 0.000000 0.441441 0.189189 0.666667 0.000000 0.297297 0.036036 0.000000 0.000000 0.144144 0.855856 0.009009 0.000000 0.990991 0.000000 0.027027 0.198198 0.000000 0.774775 0.684685 0.036036 0.261261 0.018018 0.027027 0.405405 0.000000 0.567568 0.090090 0.000000 0.900901 0.009009 0.000000 0.000000 1.000000 0.000000 0.396396 0.000000 0.603604 0.000000 0.000000 0.009009 0.054054 0.936937 0.000000 0.009009 0.900901 0.090090 0.045045 0.216216 0.063063 0.675676 0.432432 0.036036 0.207207 0.324324 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DRATGTAYGGRTGTW MEME-3 regular expression -------------------------------------------------------------------------------- [AGT][GA][AG]TGT[AG][TC]GG[GA]TG[TC][ATG] -------------------------------------------------------------------------------- Time 955.54 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:781506-781807 3.19e-03 30_[+3(2.01e-05)]_3_[+3(9.17e-07)]_\ 37 chrXII:975883-976197 7.46e-12 2_[+2(1.56e-09)]_8_[-1(1.17e-09)]_\ 41 chrVII:702268-702624 6.10e-01 100 chrIV:1461611-1462043 2.65e-05 24_[-1(5.73e-09)]_55 chrXIV:585908-586310 3.68e-01 100 chrVIII:556674-557175 1.49e-03 14_[+3(3.08e-07)]_18_[+3(3.08e-07)]_\ 9_[+3(3.08e-07)]_14 chrV:311913-312258 1.07e-06 32_[-1(7.18e-10)]_47 chrII:266227-266656 4.94e-07 21_[-2(2.86e-11)]_51 chrXIII:499808-500164 3.61e-01 100 chrIV:1401288-1401546 4.49e-03 49_[-3(4.09e-05)]_[-3(1.66e-06)]_21 chrV:492246-492570 1.45e-09 3_[+2(1.12e-08)]_7_[-1(5.12e-08)]_\ 41 chrXIV:174359-174477 1.00e+00 100 chrXI:302707-303120 9.53e-02 100 chrX:703307-703407 1.08e-03 50_[+3(1.58e-07)]_35 chrIII:114429-114785 5.75e-01 100 chrVII:878647-878975 1.18e-01 100 chrXIII:650754-651110 5.35e-01 100 chrXII:592410-592791 8.60e-07 41_[-1(2.95e-10)]_38 chrVIII:554165-554521 1.27e-01 100 chrXV:678878-679146 3.26e-04 46_[+3(4.56e-07)]_39 chrXIII:631918-632274 7.38e-01 100 chrX:115829-115929 4.29e-01 100 chrVIII:562270-562610 6.74e-04 74_[+3(1.32e-07)]_11 chrXIII:923592-923779 7.79e-01 100 chrIV:1151436-1151792 6.51e-01 100 chrXVI:775688-775993 2.17e-01 100 chrV:307163-307519 1.60e-01 100 chrV:363694-364050 7.96e-01 100 chrVII:122127-122471 1.00e-13 26_[+1(4.63e-08)]_7_[-2(8.11e-13)]_\ 18 chrXIII:266034-266390 4.82e-01 100 chrIV:210608-210964 7.59e-01 100 chrXVI:819349-819691 2.93e-07 65_[+1(1.19e-11)]_14 chrV:425008-425181 9.06e-01 100 chrX:73416-73516 1.22e-02 45_[-3(9.88e-06)]_40 chrXV:464269-464656 2.39e-04 44_[+1(5.42e-07)]_35 chrVII:547845-548201 3.55e-01 100 chrXIV:560577-560943 1.36e-06 27_[-1(8.68e-11)]_52 chrII:235610-235966 3.21e-04 7_[-1(3.80e-06)]_72 chrXV:779744-780297 6.22e-01 100 chrXVI:281426-281782 3.53e-01 100 chrXIII:267891-268265 9.97e-01 100 chrXV:445847-446115 8.48e-01 100 chrVII:794247-794574 1.33e-06 63_[+1(7.18e-10)]_16 chrII:165143-165334 4.07e-02 100 chrXVI:412372-412728 3.83e-01 100 chrXII:201857-202213 3.33e-01 100 chrXIV:63932-64288 9.68e-01 100 chrXII:794219-795131 7.83e-02 100 chrII:197321-197863 9.30e-01 100 chrIV:580074-580430 1.91e-01 100 chrXII:930778-931134 6.35e-01 100 chrX:233758-233858 1.14e-04 76_[+1(5.12e-08)]_3 chrIV:1202497-1202853 2.93e-01 100 chrXVI:804406-804762 9.07e-01 100 chrX:204567-204667 3.19e-02 60_[+1(3.03e-05)]_19 chrII:89116-89472 7.58e-01 100 chrVII:148664-148840 9.94e-01 100 chrXII:214783-215120 8.26e-07 26_[-1(7.18e-10)]_53 chrXVI:278952-279308 3.44e-01 100 chrXI:308080-308343 2.96e-05 28_[-1(2.72e-08)]_51 chrXI:159260-159428 8.03e-01 100 chrXII:210193-210549 9.05e-01 100 chrXIII:297055-297790 4.80e-01 100 chrII:414892-415036 1.61e-01 100 chrXIII:290626-290946 5.94e-01 100 chrII:477081-477395 1.42e-03 25_[-3(1.66e-06)]_4_[-3(2.23e-07)]_\ 41 chrXII:150986-151342 5.41e-01 100 chrII:159854-159973 1.08e-01 100 chrXIII:733122-733478 9.25e-01 100 chrV:269237-269593 9.85e-01 100 chrXIII:296812-297140 7.73e-06 38_[-3(9.08e-09)]_47 chrV:306519-306641 4.38e-01 100 chrIV:1525335-1525624 1.38e-03 12_[+3(3.08e-07)]_73 chrXII:838151-838395 1.16e-01 100 chrVIII:505861-506161 4.17e-04 38_[+3(5.15e-07)]_47 chrIV:1095181-1095626 1.33e-07 26_[+2(7.11e-09)]_46 chrIV:1238146-1238326 9.66e-01 100 chrXVI:769004-769463 3.27e-07 33_[+2(3.45e-10)]_39 chrVIII:382439-382592 4.84e-01 100 chrX:374298-374398 9.18e-11 10_[-1(3.03e-05)]_27_[+2(3.80e-13)]_\ 14 chrIV:785987-786343 7.79e-01 100 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5.22e-08 44_[+3(3.47e-09)]_41 chrXV:905756-906112 7.17e-01 100 chrXV:1028725-1029062 1.72e-03 36_[+3(4.88e-05)]_11_[+3(4.03e-07)]_\ 23 chrVIII:148989-149231 2.13e-03 20_[+3(3.25e-06)]_65 chrX:59020-59120 1.11e-06 23_[-1(8.68e-11)]_56 chrXIII:480465-480848 1.00e-13 24_[+2(8.11e-13)]_7_[-1(4.63e-08)]_\ 20 chrIV:579089-579335 6.51e-02 62_[-3(6.83e-05)]_23 chrII:604160-604443 2.62e-03 32_[-3(2.30e-05)]_1_[-3(3.92e-06)]_\ 37 chrXIII:752907-753263 4.19e-01 100 chrXV:710032-710340 6.49e-01 100 chrXV:900825-901181 9.25e-01 100 chrXIII:372364-372684 7.53e-05 16_[-1(2.72e-08)]_63 chrX:354076-354176 8.00e-03 48_[+1(1.64e-06)]_31 chrIV:657784-658140 1.46e-01 14_[-2(8.12e-05)]_58 chrV:423150-423425 7.04e-03 33_[-3(1.24e-06)]_52 chrV:424729-425085 5.44e-01 100 chrXII:897760-897989 1.08e-02 35_[-3(2.47e-06)]_50 chrXIII:362921-363247 1.08e-04 63_[-2(4.52e-08)]_9 chrVI:263938-264294 9.94e-01 100 chrXIII:504725-505152 4.05e-05 13_[+1(5.73e-09)]_66 chrIV:434059-434517 2.58e-14 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chrXV:978863-979090 2.07e-02 10_[+3(2.01e-05)]_75 chrII:557359-557715 7.63e-02 100 chrIII:177329-177527 3.51e-01 100 chrXIII:463391-463691 7.94e-02 69_[+1(3.03e-05)]_10 chrXII:962895-963279 3.53e-01 100 chrVII:23924-24280 7.85e-02 100 chrII:567510-567866 9.41e-01 100 chrVIII:556007-556099 2.63e-01 92 chrXIV:501020-501146 1.14e-01 18_[-1(7.79e-05)]_61 chrXV:33-236 3.85e-04 1_[-3(1.32e-07)]_84 chrXV:978036-978295 9.44e-01 100 chrXVI:572097-572476 9.50e-12 39_[+1(2.67e-07)]_5_[-2(2.56e-11)]_\ 7 chrXI:158267-158550 5.97e-02 40_[-3(1.76e-05)]_6_[-3(5.48e-05)]_\ 24 chrVII:481071-481427 7.55e-01 100 chrXIII:145920-146240 1.36e-05 52_[-3(3.08e-07)]_15_[-3(2.99e-05)]_\ 3 chrIV:958899-959255 7.08e-01 100 chrIV:322250-322606 9.22e-01 100 chrIV:1204314-1204670 7.71e-02 100 chrIII:168208-168527 6.31e-03 27_[-1(2.18e-05)]_52 chrVIII:132934-133371 4.20e-01 100 chrIII:880-999 7.34e-01 100 chrXVI:581912-582296 1.00e-13 14_[+1(4.63e-08)]_7_[-2(8.11e-13)]_\ 30 chrVI:101224-101578 3.35e-04 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chrXVI:173158-173315 6.09e-01 100 chrXV:1025797-1025964 7.14e-03 44_[-3(3.25e-06)]_41 chrX:415859-415959 9.86e-02 6_[-2(8.80e-05)]_66 chrXVI:579642-579998 1.50e-01 100 chrIV:1305476-1305814 2.07e-06 41_[+1(2.00e-10)]_38 chrXI:551641-551997 8.67e-01 100 chrXIII:168638-168948 8.49e-03 58_[+1(1.64e-06)]_21 chrXIV:567940-568324 1.24e-04 39_[+1(5.42e-07)]_40 chrVII:29-163 1.05e-01 100 chrXVI:280823-281135 1.79e-01 100 chrVII:823309-823656 5.42e-05 56_[+1(2.72e-08)]_23 chrVII:319628-319975 1.06e-04 63_[-2(4.52e-08)]_9 chrVII:845485-845853 5.13e-11 36_[+1(2.67e-07)]_5_[-2(2.56e-11)]_\ 10 chrX:542832-542932 5.18e-03 44_[-1(1.64e-06)]_35 chrIV:229539-229733 1.06e-03 42_[-3(3.25e-06)]_9_[-3(2.62e-07)]_\ 19 chrVII:727932-728288 9.43e-01 100 chrXII:797002-797335 5.62e-01 100 chrXV:409657-410013 5.63e-01 100 chrXI:284469-284663 1.71e-01 100 chrXV:621461-621658 9.29e-01 100 chrXVI:880185-880523 4.04e-18 1_[+2(2.24e-14)]_8_[-1(1.19e-11)]_\ 42 chrXVI:577114-577470 8.65e-01 100 chrX:513285-513385 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6_[+3(9.84e-05)]_79 chrVII:328397-328885 9.59e-09 25_[-2(6.02e-13)]_47 chrX:390935-391035 3.03e-10 1_[+2(1.81e-10)]_7_[-1(2.26e-07)]_\ 43 chrXV:180274-180630 1.21e-01 100 chrXI:490804-491135 1.46e-04 55_[+1(5.12e-08)]_24 chrXIII:753582-753938 9.28e-01 100 chrIV:117770-118126 6.32e-01 100 chrXII:263146-263346 3.36e-01 100 chrXIII:759754-760110 3.77e-01 100 chrVII:316946-317302 8.82e-01 100 chrXV:1004158-1004330 1.99e-03 51_[+3(2.97e-06)]_34 chrIV:356587-356943 7.78e-01 100 chrXVI:575228-575584 8.30e-01 100 chrVII:706978-707339 7.54e-06 9_[+2(1.35e-08)]_63 chrXII:262843-263040 6.43e-04 52_[-3(2.30e-05)]_5_[-3(2.62e-07)]_\ 13 chrIV:323307-323401 4.66e-01 94 chrVII:726466-726736 1.18e-03 34_[-3(9.17e-07)]_2_[-3(9.17e-07)]_\ 34 chrIX:299303-299659 3.34e-01 100 chrXV:161194-161355 6.95e-03 20_[+3(2.69e-06)]_65 chrXIV:6577-6856 1.18e-03 5_[-3(1.12e-06)]_80 chrI:229302-229405 2.17e-02 54_[-3(1.42e-05)]_31 chrVI:132641-132997 6.38e-01 100 chrX:541337-541437 1.61e-02 69_[+1(3.03e-05)]_10 chrXII:5476-5885 1.18e-04 34_[-3(1.32e-07)]_15_[-3(3.08e-07)]_\ 2_[-3(1.09e-07)]_4 chrXVI:810504-810857 3.00e-06 52_[+1(1.17e-09)]_27 chrV:364207-364563 2.40e-01 100 chrX:73815-73915 9.49e-01 100 chrXVI:781318-781674 8.68e-01 100 chrVIII:126603-126760 5.72e-01 100 chrVIII:388795-389179 1.74e-05 30_[-1(5.42e-07)]_49 chrXI:53295-53651 5.31e-01 100 chrVIII:85228-85523 3.84e-05 18_[-1(2.72e-08)]_61 chrVIII:5250-5606 2.50e-01 100 chrIV:1300969-1301293 3.52e-03 26_[-3(2.47e-06)]_1_[+3(4.88e-05)]_\ 43 chrIV:835804-836119 7.20e-03 38_[-3(2.04e-06)]_47 chrXIII:226053-226409 1.08e-01 7_[-3(4.88e-05)]_78 chrXV:977139-977239 4.77e-01 100 chrXII:856026-856171 7.07e-01 100 chrVI:204830-205144 1.11e-06 31_[-1(2.50e-09)]_48 chrXIII:753812-754168 9.23e-01 100 chrXVI:338789-339046 3.74e-01 100 chrV:78067-78423 8.31e-01 100 chrV:140518-140835 2.12e-03 47_[+3(9.17e-07)]_22_[+3(5.13e-06)]_\ 1 chrIV:358148-358351 9.91e-03 48_[+3(1.66e-06)]_37 chrXII:489313-489514 4.16e-03 34_[+1(5.01e-06)]_45 chrXIV:89226-89522 2.65e-01 100 chrVI:162060-162365 4.37e-04 72_[+1(2.67e-07)]_7 chrXII:713179-713513 4.37e-03 74_[+3(5.15e-07)]_11 chrXIII:747784-748132 4.93e-02 27_[-1(5.82e-05)]_52 chrXI:309447-309803 9.63e-02 50_[+3(9.35e-05)]_35 chrXV:571782-572097 1.46e-02 75_[+1(3.03e-05)]_4 chrX:213808-213908 9.14e-01 100 chrXVI:935637-935993 6.91e-01 100 chrXIII:888780-888933 5.40e-01 100 chrIX:174883-175262 2.58e-14 15_[+1(8.68e-11)]_7_[-2(2.86e-11)]_\ 29 chrVIII:109732-110088 8.93e-01 100 chrV:99954-100302 7.13e-02 100 chrVIII:103917-104221 1.03e-01 36_[-3(9.84e-05)]_49 chrVII:826889-827245 8.42e-01 100 chrXVI:210085-210433 5.76e-01 100 chrIV:340305-340661 4.97e-01 100 chrII:88120-88517 9.65e-01 100 chrXII:78533-78889 5.01e-01 100 chrVII:700540-701227 9.12e-01 100 chrVI:4456-4956 6.54e-05 32_[-3(3.08e-07)]_[-3(1.88e-08)]_23_\ [-3(1.32e-07)] chrX:139927-140027 7.56e-01 100 chrVIII:381675-381860 6.33e-01 100 chrXIV:619774-620011 9.53e-01 100 chrXV:845-934 6.42e-01 89 chrVII:727824-727985 8.20e-01 100 chrXII:818874-819149 9.09e-04 36_[-3(6.57e-07)]_26_[+3(2.15e-05)]_\ 8 chrVII:287244-287646 1.18e-01 100 chrVII:541635-542117 3.63e-09 57_[-2(6.02e-13)]_15 chrV:443127-443508 9.03e-01 100 chrXII:167852-168184 1.08e-06 29_[-1(2.00e-10)]_50 chrXV:444956-445312 6.40e-01 100 chrXVI:699979-700321 1.42e-02 32_[-3(4.61e-05)]_20_[-3(1.53e-05)]_\ 18 chrXV:617249-617605 5.11e-01 100 chrXII:29-227 3.28e-01 100 chrV:433827-434183 9.85e-01 100 chrVIII:386673-386769 4.13e-01 96 chrVIII:375362-375758 1.93e-01 100 chrX:607917-608017 1.08e-03 30_[-3(6.57e-07)]_3_[-3(2.15e-05)]_\ 37 chrV:431016-431541 6.70e-02 100 chrXIII:651393-651749 5.68e-01 100 chrXII:11063-11509 9.79e-05 2_[-3(3.08e-07)]_14_[-3(1.32e-07)]_\ 15_[-3(1.88e-08)]_7_[-3(6.63e-06)]_2 chrIV:322450-322806 5.34e-01 100 chrXII:242326-242682 9.43e-01 100 chrVII:365003-365203 3.41e-01 100 chrIII:127570-127865 4.77e-06 55_[+1(1.17e-09)]_24 chrXI:141655-141845 8.23e-01 100 chrIV:323055-323300 6.97e-01 100 chrIV:309484-309579 3.89e-01 95 chrVII:366148-366457 1.14e-01 100 chrVII:205359-205697 1.60e-05 49_[+1(5.73e-09)]_30 chrVII:1083584-1083940 8.03e-01 100 chrXIII:57365-57721 3.94e-01 100 chrXI:106520-106876 4.26e-02 100 chrXII:92375-92786 2.39e-04 24_[+1(5.42e-07)]_55 chrXV:253875-254054 8.60e-03 31_[-3(5.17e-05)]_16_[+3(3.19e-05)]_\ 23 chrVII:882496-882850 7.97e-01 100 chrII:167953-168147 2.77e-02 33_[-3(2.15e-05)]_2_[-3(6.13e-05)]_\ 35 chrXVI:560051-560467 8.61e-06 52_[-1(1.74e-08)]_27 chrVII:310527-310849 1.12e-02 46_[-3(5.13e-06)]_[-3(6.13e-05)]_24 chrXII:712187-712543 9.29e-01 100 chrXIII:131701-132059 1.93e-10 4_[+2(3.80e-13)]_6_[-1(5.82e-05)]_\ 41 chrXV:1028011-1028156 9.41e-01 100 chrVII:479464-479716 5.32e-01 100 chrVIII:553410-553766 5.87e-01 100 chrIV:1355773-1355975 4.10e-04 13_[+3(4.42e-08)]_9_[+3(3.08e-07)]_\ 48 chrIV:1021694-1021818 9.08e-01 100 chrII:605776-606075 7.63e-05 39_[-3(7.37e-07)]_26_[+3(5.48e-05)]_\ 5 chrXI:143563-143919 2.66e-01 100 chrIII:163502-163834 3.84e-04 27_[+3(2.62e-07)]_15_[+3(1.23e-05)]_\ 28 chrV:101495-101851 9.89e-01 100 chrIX:355014-355370 5.51e-01 100 chrXIII:736859-737215 9.97e-01 100 chrIII:227779-228149 2.41e-06 34_[+1(3.54e-10)]_45 chrXIII:754462-754756 1.25e-03 11_[+3(3.49e-07)]_74 chrVII:609649-609754 7.48e-01 100 chrIV:1397801-1398157 2.18e-01 100 chrXIII:225378-225689 6.02e-04 60_[-3(1.32e-07)]_25 chrX:538384-538484 1.23e-02 70_[+1(1.76e-05)]_9 chrXII:628213-628627 2.65e-05 19_[+1(5.73e-09)]_60 chrXVI:860212-860533 3.49e-04 63_[+1(2.67e-07)]_16 chrIV:1236897-1237253 1.78e-01 100 chrXV:160275-160631 1.62e-04 8_[+1(4.25e-06)]_71 chrXII:498542-498849 8.83e-03 26_[-3(1.66e-06)]_59 chrXV:79804-80084 1.22e-03 52_[+3(1.90e-07)]_33 chrIV:1354437-1354793 9.78e-01 100 chrIV:338096-338452 9.32e-01 100 chrVI:157817-158173 3.86e-05 34_[-1(1.74e-08)]_45 chrXV:1028057-1028413 5.89e-01 100 chrX:701696-701796 6.74e-01 100 chrV:8109-8465 6.40e-01 100 chrXI:326770-327126 1.06e-01 100 chrIV:1017001-1017451 4.24e-09 40_[+2(6.02e-13)]_32 chrII:9399-9749 5.70e-07 65_[+1(2.50e-09)]_14 chrII:414095-414207 9.90e-01 100 chrXIV:499428-499559 9.97e-01 100 chrXVI:435769-436146 1.34e-01 100 chrXII:693791-694147 8.45e-01 100 chrXIV:721931-722287 9.54e-01 100 chrXVI:378707-378959 5.66e-05 30_[+3(2.97e-06)]_10_[+3(2.23e-07)]_\ 30 chrIV:217191-217457 4.71e-03 38_[-3(2.47e-06)]_47 chrXI:458399-458846 1.89e-02 60_[-2(3.64e-05)]_12 chrIV:449689-449872 1.00e+00 100 chrXVI:520222-520490 1.57e-02 56_[-3(2.46e-05)]_29 chrX:227986-228086 5.71e-01 100 chrIV:720634-720990 7.22e-01 100 chrXIV:26266-26622 9.76e-01 100 chrIV:1175668-1176071 3.03e-10 16_[+1(2.26e-07)]_7_[-2(1.81e-10)]_\ 28 chrXIII:420494-420828 3.06e-05 22_[-1(2.72e-08)]_57 chrX:424392-424492 7.06e-06 [-1(2.50e-09)]_79 chrXII:373596-373952 4.36e-01 100 chrIV:1449847-1450203 3.87e-01 100 chrXIII:124377-124658 9.46e-03 26_[-3(4.72e-06)]_3_[+3(6.10e-06)]_\ 41 chrXI:313316-313642 2.49e-03 65_[-3(2.47e-06)]_20 chrIV:581343-581699 8.51e-01 100 chrXII:932110-932453 3.76e-04 34_[+3(2.55e-08)]_18_[+3(1.02e-06)]_\ 18 chrXIV:500401-500750 4.17e-01 100 chrXV:1004747-1004982 7.79e-01 100 chrXII:232427-232783 2.00e-01 100 chrVII:254163-254506 2.09e-03 42_[-3(1.51e-06)]_4_[+3(6.57e-07)]_\ 24 chrXV:854046-854418 5.19e-14 14_[+2(3.56e-11)]_7_[-1(7.18e-10)]_\ 30 chrV:101292-101648 8.95e-01 100 chrV:102254-102610 2.01e-01 100 chrII:36260-36535 2.96e-05 57_[+1(1.74e-08)]_22 chrX:75404-75504 8.79e-04 20_[+3(1.24e-06)]_27_[+3(7.20e-06)]_\ 23 chrII:405709-406100 1.93e-10 30_[+1(5.82e-05)]_6_[-2(3.80e-13)]_\ 15 chrX:378191-378291 2.68e-05 45_[+1(2.72e-08)]_34 chrIV:1150704-1151104 4.09e-07 59_[-1(1.64e-10)]_20 chrVII:476738-477094 7.50e-02 100 chrV:207182-207531 5.87e-01 100 chrVII:543259-543615 5.10e-01 100 chrIX:316797-317153 9.98e-01 100 chrXII:922172-922493 1.24e-03 35_[-3(2.46e-05)]_11_[-3(1.12e-06)]_\ 24 chrXII:796468-796826 2.02e-03 35_[+3(1.12e-06)]_50 chrIII:11268-11419 8.28e-01 100 chrVII:555353-555651 3.84e-05 56_[-3(3.49e-07)]_1_[+3(1.88e-05)]_\ 13 chrIX:318028-318179 6.77e-01 100 chrIV:117189-117530 1.10e-02 59_[-3(1.33e-05)]_26 chrVII:788374-788703 2.63e-03 39_[+3(1.12e-06)]_46 chrIV:465278-465634 7.16e-01 100 chrVII:482307-482511 4.23e-01 100 chrVIII:556072-556428 8.67e-01 100 chrVII:149167-149479 2.03e-03 43_[+3(3.08e-07)]_42 chrV:138498-138856 9.72e-11 45_[+1(5.82e-05)]_6_[-2(3.80e-13)] chrXV:631-755 9.57e-01 100 chrIV:410225-410526 6.03e-06 60_[+1(2.50e-09)]_19 chrIV:520806-521119 3.00e-03 66_[+1(2.18e-05)]_13 chrVII:354385-354741 4.67e-01 100 chrXVI:405134-405499 7.47e-01 100 chrVIII:116014-116343 6.85e-07 23_[-1(8.68e-11)]_56 chrXII:790371-790727 7.17e-01 100 chrIII:131894-132250 8.17e-01 100 chrII:350648-350947 2.66e-01 100 chrIV:1302629-1302985 7.19e-01 100 chrIV:884219-884542 8.47e-05 37_[+1(1.11e-07)]_42 chrXI:551439-551795 6.95e-02 100 chrXVI:56069-56483 2.10e-02 27_[-2(8.80e-05)]_45 chrXII:793750-794055 6.90e-02 72_[+1(3.03e-05)]_7 chrXI:379518-379812 3.16e-05 71_[+1(2.72e-08)]_8 chrIV:1450978-1451176 7.93e-03 54_[+3(3.58e-06)]_31 chrXII:731922-732246 6.02e-07 62_[+1(2.95e-10)]_17 chrVII:703400-703756 3.06e-01 100 chrXI:202841-203161 2.24e-04 54_[+1(4.63e-08)]_25 chrX:516096-516196 8.77e-01 100 chrXIV:569789-570054 5.74e-18 5_[+2(2.24e-14)]_8_[-1(1.19e-11)]_\ 38 chrV:267988-268344 2.18e-01 100 chrV:131036-131322 4.14e-01 100 chrIV:992641-992977 3.44e-04 79_[+1(2.67e-07)] chrXII:370562-370918 6.03e-02 25_[+3(6.47e-05)]_60 chrXIII:224125-224324 1.47e-03 14_[+3(2.62e-07)]_10_[+3(7.82e-06)]_\ 46 chrXIV:771917-772273 2.68e-01 100 chrXV:505160-505455 2.29e-02 35_[-3(7.20e-06)]_10_[-3(6.63e-06)]_\ 25 chrVII:73766-74089 9.40e-03 5_[-1(5.82e-05)]_42_[+1(7.97e-06)]_\ 11 chrV:53576-53905 7.85e-03 27_[-3(1.84e-06)]_1_[+3(9.16e-06)]_\ 42 chrXV:94093-94182 7.20e-01 89 chrV:86446-86771 1.80e-06 52_[+1(2.00e-10)]_27 chrXIV:602191-602443 9.57e-08 51_[+1(1.19e-11)]_28 chrXIV:415794-415915 5.77e-01 100 chrIV:946145-946554 3.02e-08 19_[+1(1.64e-06)]_23_[-2(3.82e-09)]_\ 9 chrVII:857300-857649 2.65e-05 39_[-1(5.73e-09)]_40 chrVIII:382964-383321 2.56e-06 7_[+3(3.39e-08)]_2_[+3(1.23e-05)]_\ 61 chrV:143864-143960 6.75e-01 96 chrXV:300900-301354 2.94e-04 26_[+1(5.42e-07)]_53 chrV:362226-362437 5.04e-02 44_[-3(8.01e-05)]_8_[-3(2.46e-05)]_\ 18 chrIV:491595-491951 8.55e-01 100 chrI:180980-181434 1.89e-02 59_[-2(3.64e-05)]_13 chrIV:1075352-1075690 2.73e-07 10_[+2(1.44e-09)]_7_[-1(5.41e-05)]_\ 34 chrXII:951570-951926 3.44e-01 100 chrXI:549005-549361 5.69e-01 100 chrXIII:122989-123345 5.54e-01 100 chrXIII:761891-762199 9.79e-01 100 chrIV:437544-437958 2.07e-06 77_[+1(2.00e-10)]_2 chrII:544502-544858 9.22e-01 100 chrXI:552193-552549 5.14e-01 100 chrXIV:96099-96463 8.98e-10 19_[+2(3.77e-10)]_6_[-1(1.12e-05)]_\ 26 chrVII:805068-805424 8.41e-01 100 chrXII:951037-951393 4.36e-01 100 chrII:556762-557118 3.74e-01 100 chrXV:254648-255004 8.00e-01 100 chrIV:83400-83701 2.96e-04 54_[+1(2.67e-07)]_25 chrV:435670-435985 7.66e-05 19_[-1(4.63e-08)]_60 chrXII:199304-199582 4.65e-01 100 chrV:407717-408073 2.75e-01 100 chrX:531653-531753 5.13e-11 8_[+1(2.67e-07)]_5_[-2(2.56e-11)]_\ 38 chrIV:1352374-1352697 2.24e-04 25_[-1(4.63e-08)]_54 chrIII:190915-191271 8.82e-01 100 chrXV:968175-968343 1.91e-03 58_[+3(7.20e-06)]_27 chrXI:108769-109032 1.86e-03 51_[-3(7.60e-05)]_3_[-3(3.08e-07)]_\ 16 chrXI:666452-666791 9.75e-05 39_[+3(1.88e-08)]_13_[+3(1.12e-06)]_\ 18 chrV:85868-86224 3.97e-01 100 chrVII:346217-346422 9.20e-01 100 chrII:592947-593252 7.83e-04 17_[+3(3.84e-05)]_2_[+3(1.90e-07)]_\ 51 chrXV:94528-94802 4.20e-03 18_[-3(6.57e-07)]_67 chrXI:326335-326503 6.63e-01 100 chrXI:26228-26362 5.48e-01 100 chrXVI:935836-936192 8.90e-01 100 chrXIV:726076-726383 9.31e-07 10_[-1(2.50e-09)]_69 chrXIV:102547-102859 6.54e-06 69_[+1(1.17e-09)]_10 chrIV:1492527-1492883 9.71e-01 100 chrXIV:758853-759209 8.59e-01 100 chrII:645017-645323 4.23e-01 100 chrVII:535433-535789 7.92e-01 100 chrXIII:671430-671786 8.83e-01 100 chrXII:651010-651208 3.35e-04 79_[-3(1.58e-07)]_6 chrXV:216296-216635 7.46e-03 42_[-3(1.66e-06)]_1_[-3(6.83e-05)]_\ 27 chrIII:178375-178658 1.01e-02 4_[+3(4.72e-06)]_3_[-3(6.83e-05)]_\ 63 chrV:29227-29583 7.25e-01 100 chrII:169381-169472 4.83e-01 91 chrXII:241662-241968 1.60e-03 40_[-3(4.56e-07)]_6_[-3(2.97e-06)]_\ 24 chrXI:27-232 3.15e-04 67_[-1(2.11e-06)]_12 chrIII:295334-295634 1.24e-06 56_[+1(8.68e-11)]_23 chrXIII:551405-551760 1.40e-02 9_[+3(4.61e-05)]_45_[-3(3.40e-05)]_\ 1_[-3(2.23e-06)] chrXV:566504-566860 8.39e-01 100 chrVII:661544-661897 6.07e-01 100 chrXII:899189-899545 9.77e-01 100 chrXV:673373-673729 9.70e-01 100 chrXIII:259068-259419 2.07e-06 18_[-1(2.00e-10)]_61 chrXV:438470-438937 3.27e-07 47_[-2(3.45e-10)]_25 chrII:393848-394204 3.54e-01 100 chrIV:1516689-1517045 4.10e-01 100 chrV:438546-438856 5.81e-05 55_[+1(2.72e-08)]_24 chrVII:561479-561911 5.39e-07 70_[-1(2.00e-10)]_9 chrX:213597-213697 9.34e-01 100 chrVII:602420-602776 6.63e-01 100 chrXII:121613-121969 8.75e-01 100 chrXII:369730-370086 3.56e-02 100 chrIX:115233-115589 4.52e-01 100 chrVI:84076-84228 7.44e-02 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************