******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CIN5/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrXV:382910-383571 1.0000 100 chrV:143814-144149 1.0000 100 chrXII:91476-91920 1.0000 100 chrXI:46553-47002 1.0000 100 chrXV:117619-117853 1.0000 100 chrV:305657-306207 1.0000 100 chrXII:818784-819186 1.0000 100 chrV:52687-53131 1.0000 100 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chrXII:86741-87185 1.0000 100 chrII:235767-236004 1.0000 100 chrVIII:237676-238181 1.0000 100 chrXIV:23971-24415 1.0000 100 chrXII:790336-790780 1.0000 100 chrIV:130556-130996 1.0000 100 chrXI:490751-491204 1.0000 100 chrIX:138319-138963 1.0000 100 chrIV:1075297-1075735 1.0000 100 chrXIII:420432-420905 1.0000 100 chrXV:22210-22426 1.0000 100 chrXII:837711-838595 1.0000 100 chrIV:509574-509997 1.0000 100 chrXIV:301498-302066 1.0000 100 chrXIII:259017-259482 1.0000 100 chrIII:168113-168566 1.0000 100 chrV:138436-139017 1.0000 100 chrII:326597-327136 1.0000 100 chrX:421961-422061 1.0000 100 chrXII:36832-37276 1.0000 100 chrX:349045-349145 1.0000 100 chrVII:919926-920216 1.0000 100 chrV:241968-242351 1.0000 100 chrXV:882696-882946 1.0000 100 chrXII:262760-263599 1.0000 100 chrIV:355995-356439 1.0000 100 chrVIII:462000-462232 1.0000 100 chrXV:1028588-1029166 1.0000 100 chrVII:782682-783126 1.0000 100 chrXIV:415411-416045 1.0000 100 chrXV:622705-622988 1.0000 100 chrXII:818426-818829 1.0000 100 chrXIII:888657-889010 1.0000 100 chrXIII:195882-196415 1.0000 100 chrXV:623284-623713 1.0000 100 chrVIII:382925-383381 1.0000 100 chrXIII:348259-348656 1.0000 100 chrIX:183276-183707 1.0000 100 chrVII:780492-780815 1.0000 100 chrX:424307-424407 1.0000 100 chrXV:340126-340573 1.0000 100 chrXII:448481-448968 1.0000 100 chrXVI:785589-785934 1.0000 100 chrIV:488512-489084 1.0000 100 chrX:440837-440937 1.0000 100 chrVII:1083644-1083869 1.0000 100 chrX:458482-458582 1.0000 100 chrXVI:280040-280230 1.0000 100 chrXIV:499326-499660 1.0000 100 chrVII:787080-787306 1.0000 100 chrV:56218-56492 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CIN5/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CIN5/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CIN5/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 566 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 56600 N= 566 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.320 C 0.180 G 0.180 T 0.320 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--CIN5/background): A 0.322 C 0.178 G 0.178 T 0.322 ******************************************************************************** ******************************************************************************** MOTIF CSCYTWAMCMACTSGGCCA MEME-1 width = 19 sites = 85 llr = 1282 E-value = 3.7e-212 ******************************************************************************** -------------------------------------------------------------------------------- Motif CSCYTWAMCMACTSGGCCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::21:665:3a:21121:8 pos.-specific C 76852:25a5:8:31299: probability G 34:1::2::2:::4761:1 matrix T :::374:::1:282:::11 bits 2.5 * 2.2 * 2.0 * * 1.7 * * ** Relative 1.5 *** * ** ** Entropy 1.2 *** * ** * ** (21.8 bits) 1.0 *** ** *** **** 0.7 *** * ** *** ***** 0.5 *** *************** 0.2 ******************* 0.0 ------------------- Multilevel CCCCTAAACCACTGGGCCA consensus GGATCTCC A AC C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCYTWAMCMACTSGGCCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------- chrXIII:259017-259482 + 15 1.68e-11 TCTAATCTTT CGCCTTAACCACTCGGCCA AGTTGCCATA chrIV:1305432-1305912 - 15 1.68e-11 TCTAATCTTT CGCCTTAACCACTCGGCCA AGTTGCCTTA chrIII:227735-228204 - 30 1.68e-11 TCGAGTCTCT CGCCTTAACCACTCGGCCA TAGTGCCATT chrIV:980823-981274 + 32 1.68e-11 TCTAATCTTT CGCCTTAACCACTCGGCCA AGTTGCCTCA chrXII:784154-784598 - 35 1.68e-11 TAGCAGGCAT CGCCTTAACCACTCGGCCA CTGGGACGGT chrX:523782-523882 + 71 1.68e-11 TCTAATCTTT CGCCTTAACCACTCGGCCA AGTTGCCTTT chrII:226846-227373 - 23 1.68e-11 TCTAATCTTT CGCCTTAACCACTCGGCCA AGTTGCCTCG chrVII:561390-561990 + 78 1.68e-11 TCTAATCTTT CGCCTTAACCACTCGGCCA AGTT chrX:617704-617804 - 43 1.91e-10 TAAATCTGAC GCCTTAAACCACTCGGCCA AACTCCCATT chrXII:592362-592884 + 21 1.91e-10 TAAATCTGAC GCCTTAAACCACTCGGCCA AACTCCCATT chrIX:183276-183707 + 47 3.39e-10 TTAGCACGGT GCCTTAACCAACTGGGCCA AGAGACCAGG chrIV:667784-668282 + 72 3.39e-10 TTAGCACGGT GCCTTAACCAACTGGGCCA AGAGACCAAT chrVII:738874-739357 - 64 3.39e-10 TTAGCACGGT GCCTTAACCAACTGGGCCA AGAGACCTAT chrV:443050-443528 + 11 3.39e-10 TTAGCACGGT GCCTTAACCAACTGGGCCA AGAGACCAAA chrXII:734641-735066 - 6 3.39e-10 TTAGCACGGT GCCTTAACCAACTGGGCCA AGAGA chrXII:1051867-1052351 + 60 3.39e-10 TTAGCACGGT GCCTTAACCAACTGGGCCA AGAGACCATG chrXIV:569702-570105 + 62 3.39e-10 TTAGCACGGT GCCTTAACCAACTGGGCCA AGAGACCACT chrXVI:819287-819768 - 59 3.39e-10 TTAGCACGGT GCCTTAACCAACTGGGCCA AGAGACCATT chrVIII:115944-116388 + 38 4.00e-10 ACTAGTGTGG CGCCTTACCAACTTGGCCA TAGAAGCTCT chrII:266170-266676 - 12 4.00e-10 ACTAGTGTGG CGCCTTACCAACTTGGCCA TAGAAGCAGT chrXIV:560487-561008 + 43 4.00e-10 ACTAGTGTGG CGCCTTACCAACTTGGCCA TAGAAGCCCG chrX:58952-59052 + 38 4.00e-10 ACTAGTGTGG CGCCTTACCAACTTGGCCA TAGAAGCTTC chrIX:325524-326031 - 28 4.00e-10 ACTAGTGTGG CGCCTTACCAACTTGGCCA TAGAAGCTCG chrIII:295283-295758 - 21 4.00e-10 ACTAGTGTGG CGCCTTACCAACTTGGCCA TAGAAGCTTA chrIV:433991-434592 + 70 4.00e-10 ACTAGTGTGG CGCCTTACCAACTTGGCCA TAGAAGCTTC chrX:424307-424407 + 24 5.76e-10 TAAGTCTGCC GCCTTAGACCACTCGGCCA ACCCTCCATC chrXIV:725972-726431 + 41 5.76e-10 TAAGTCTGCC GCCTTAGACCACTCGGCCA ACCCTCCAAA chrII:347382-347842 - 48 5.76e-10 TAAGTCTGCC GCCTTAGACCACTCGGCCA ACCCTCCGTA chrIV:519543-519975 - 41 5.76e-10 TAAGTCTGCC GCCTTAGACCACTCGGCCA ACCCTCCGTA chrXV:228107-228577 - 46 2.40e-09 ACAGTCGCAC GCCTTAACCAACTTGGCCA TGGAGTCTAA chrXVI:810423-810922 - 61 2.40e-09 ACAGTCGCAC GCCTTAACCAACTTGGCCA TGGAGTCGCA chrVII:794182-794644 - 61 1.08e-08 GCAAGGGAAG CGCGCTACCAACTGCGCCA TGTGCCCGCA chrXV:340126-340573 + 47 2.24e-08 CGTAGCCAGA CGCCGTGACCATTGGGCCA CGAGGAACAG chrXI:490751-491204 - 48 2.24e-08 CGTAGCCAGA CGCCGTGACCATTGGGCCA CGAGGAACAA chrV:492167-492609 + 61 2.24e-08 CGTAGCCAGA CGCCGTGACCATTGGGCCA CGAGGAATAG chrIV:619729-620256 + 74 2.24e-08 CGTAGCCAGA CGCCGTGACCATTGGGCCA CGAGGAAC chrXV:300851-301397 - 22 6.08e-08 GAGAATCATA CCACTAGACCACACGCCCG ATCTTTTCTG chrIV:1461518-1462112 + 39 6.08e-08 TGAATCAGGC GCCTTAGACCGCTCGGCCA AACAACCACT chrXIV:567893-568432 - 2 6.08e-08 GAGAATCATA CCACTAGACCACACGCCCG A chrVII:774129-774606 - 39 7.48e-08 GCTAAGGGAG CGCGCTACCGACTACGCCA CACGCCCAAT chrXVI:856707-857133 - 39 7.48e-08 GCTAAGGGAG CGCGCTACCGACTACGCCA CACGCCCGAA chrXIII:420432-420905 + 18 9.17e-08 TTAAGCAGAT GCCATAACCGACTAGACCA CGAAACCTGT chrXI:379482-379898 - 47 9.17e-08 TTAAGCAGAT GCCATAACCGACTAGACCA CGAAACCTAT chrVII:823229-823710 - 70 9.17e-08 TTAAGCAGAT GCCATAACCGACTAGACCA CGAAACCACT chrVIII:85162-85586 + 22 9.17e-08 TTAAGCAGAT GCCATAACCGACTAGACCA CGAAACCAAA chrXI:308014-308409 + 31 9.17e-08 TTAAGCAGAT GCCATAACCGACTAGACCA CGAAACCACT chrXIII:372261-372748 + 39 9.17e-08 TTAAGCAGAT GCCATAACCGACTAGACCA CGAAACCAGG chrXII:687634-688173 + 54 9.17e-08 TTAAGCAGAT GCCATAACCGACTAGACCA CGAAACCTAT chrXVI:581867-582368 - 2 1.01e-07 AAGAGTCATA CGCGCTACCGATTGCGCCA A chrV:435618-436055 + 13 1.01e-07 AAGAGTCATA CGCGCTACCGATTGCGCCA ACAAGGCTCT chrXI:202789-203302 - 11 1.01e-07 AAGAGTCATA CGCGCTACCGATTGCGCCA ACAAGGCTTT chrVII:185507-185964 + 76 1.01e-07 AAGAGTCATA CGCGCTACCGATTGCGCCA ACAAGG chrVII:876188-876687 - 14 1.01e-07 AAGAGTCATA CGCGCTACCGATTGCGCCA ACAAGGCTAT chrXIII:195882-196415 + 55 1.12e-07 GAGAATCATA CCACTAGACCACACGCCCT TGTGAACTTG chrXII:92318-92846 - 15 1.12e-07 GAGAATCATA CCACTAGACCACACGCCCT TATTAACTTG chrXI:578765-579259 - 10 1.97e-07 AAAAGCCGAA CGCTCTACCAACTGAGCTA ACAAGGATG chrXVI:572015-572538 - 42 2.37e-07 TTGGATTTTA CCACTAAACCACTTGCGCG AAGTATTGTG chrXV:281921-282396 - 55 2.37e-07 TTGGATTTTA CCACTAAACCACTTGCGCG CTTTCATGTT chrVIII:237676-238181 + 36 3.09e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTA AATCCGCTTA chrII:36203-36595 - 56 3.09e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTA AATCCGCTTA chrXVI:622366-622849 + 49 3.09e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTA AATCCGCATA chrXIII:352046-352493 - 68 3.09e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTA AATCCGCTTA chrVII:440436-441188 + 20 3.09e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTA AATCCGCATA chrXIV:631704-632117 + 40 3.99e-07 GAGAATCATA CCTCTAGACCACACGCCCG GTAGAAGTTG chrVI:162021-162421 - 56 3.99e-07 TTGGATTTTA CCACTAAACCACTTGCGCT TGTTTTCTTG chrVII:845440-845895 - 31 3.99e-07 TTGGATTTTA CCACTAAACCACTTGCGCT TGTTATTTAT chrXVI:860173-860589 - 47 3.99e-07 TTGGATTTTA CCACTAAACCACTTGCGCT TGTTATTTAC chrVII:930793-931265 + 27 3.99e-07 TTGGATTTTA CCACTAAACCACTTGCGCT TACTGATTAT chrX:531595-531695 - 4 3.99e-07 TTGGATTTTA CCACTAAACCACTTGCGCT CAC chrIII:123395-123813 + 77 6.51e-07 GAGAATCATA CCTCTAGACCACACGCCCT CCTTT chrIII:168113-168566 + 66 1.03e-06 AAAGTGATAA CCACTACACTATAGGACCA GGACTTCTTG chrV:250089-250562 - 10 1.03e-06 AAAGTGATAA CCACTACACTATAGGACCA GTACAACTG chrXII:5434-5942 + 31 1.29e-06 ATACACCACA CCCACACACCACACCCACA CCACACCCAC chrVIII:562243-562635 - 68 1.29e-06 CACACCCACA CCCACACACCACACCCACA CTTTTCACAT chrXII:11021-11544 + 40 1.29e-06 ACACACCACA CCCACACACCACACCCACA CCCACACCAC chrVI:4419-4989 + 68 1.29e-06 CACACCCACA CCCACACACCACACCCACA CCACACCCAC chrII:326597-327136 + 24 1.83e-06 TAAAGGCGAC GTCTTGAACCACTGGACCA TTGGACCCGG chrXII:1064842-1065358 - 34 2.09e-06 ACCCACCACA CCCACACACCACACACACA CACACCACAC chrXII:448481-448968 + 30 2.55e-06 AAAGTGATAA CCACTACACTATAGGACCG GAACTTCTTG chrIV:802551-803027 + 46 2.55e-06 AAAGTGATAA CCACTACACTATAGGACCG ACAATTCATG chrVIII:134084-134580 - 38 2.55e-06 AAAGTGATAA CCACTACACTATAGGACCG GAACTTACTG chrIV:644983-645418 + 57 2.55e-06 AAAGTGATAA CCACTACACTATAGGACCG TAACAACTGT chrXI:28-265 + 53 3.29e-06 TCCACTCGTT ACCCTGCCCCACTCAACCA TACCACTCCC chrX:390865-390965 + 42 3.96e-06 ATGAGACTGA CGCTCTTCCTACTGAGCTA CTGAAGCACT chrXV:976172-976757 - 14 3.96e-06 ATGAGACTGA CGCTCTTCCTACTGAGCTA CTGAAGCGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCYTWAMCMACTSGGCCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:259017-259482 1.7e-11 14_[+1]_67 chrIV:1305432-1305912 1.7e-11 14_[-1]_67 chrIII:227735-228204 1.7e-11 29_[-1]_52 chrIV:980823-981274 1.7e-11 31_[+1]_50 chrXII:784154-784598 1.7e-11 34_[-1]_47 chrX:523782-523882 1.7e-11 70_[+1]_11 chrII:226846-227373 1.7e-11 22_[-1]_59 chrVII:561390-561990 1.7e-11 77_[+1]_4 chrX:617704-617804 1.9e-10 42_[-1]_39 chrXII:592362-592884 1.9e-10 20_[+1]_61 chrIX:183276-183707 3.4e-10 46_[+1]_35 chrIV:667784-668282 3.4e-10 71_[+1]_10 chrVII:738874-739357 3.4e-10 63_[-1]_18 chrV:443050-443528 3.4e-10 10_[+1]_71 chrXII:734641-735066 3.4e-10 5_[-1]_76 chrXII:1051867-1052351 3.4e-10 59_[+1]_22 chrXIV:569702-570105 3.4e-10 61_[+1]_20 chrXVI:819287-819768 3.4e-10 58_[-1]_23 chrVIII:115944-116388 4e-10 37_[+1]_44 chrII:266170-266676 4e-10 11_[-1]_70 chrXIV:560487-561008 4e-10 42_[+1]_39 chrX:58952-59052 4e-10 37_[+1]_44 chrIX:325524-326031 4e-10 27_[-1]_54 chrIII:295283-295758 4e-10 20_[-1]_61 chrIV:433991-434592 4e-10 69_[+1]_12 chrX:424307-424407 5.8e-10 23_[+1]_58 chrXIV:725972-726431 5.8e-10 40_[+1]_41 chrII:347382-347842 5.8e-10 47_[-1]_34 chrIV:519543-519975 5.8e-10 40_[-1]_41 chrXV:228107-228577 2.4e-09 45_[-1]_36 chrXVI:810423-810922 2.4e-09 60_[-1]_21 chrVII:794182-794644 1.1e-08 60_[-1]_21 chrXV:340126-340573 2.2e-08 46_[+1]_35 chrXI:490751-491204 2.2e-08 47_[-1]_34 chrV:492167-492609 2.2e-08 60_[+1]_21 chrIV:619729-620256 2.2e-08 73_[+1]_8 chrXV:300851-301397 6.1e-08 21_[-1]_60 chrIV:1461518-1462112 6.1e-08 38_[+1]_43 chrXIV:567893-568432 6.1e-08 1_[-1]_80 chrVII:774129-774606 7.5e-08 38_[-1]_43 chrXVI:856707-857133 7.5e-08 38_[-1]_43 chrXIII:420432-420905 9.2e-08 17_[+1]_64 chrXI:379482-379898 9.2e-08 46_[-1]_35 chrVII:823229-823710 9.2e-08 69_[-1]_12 chrVIII:85162-85586 9.2e-08 21_[+1]_60 chrXI:308014-308409 9.2e-08 30_[+1]_51 chrXIII:372261-372748 9.2e-08 38_[+1]_43 chrXII:687634-688173 9.2e-08 53_[+1]_28 chrXVI:581867-582368 1e-07 1_[-1]_80 chrV:435618-436055 1e-07 12_[+1]_69 chrXI:202789-203302 1e-07 10_[-1]_71 chrVII:185507-185964 1e-07 75_[+1]_6 chrVII:876188-876687 1e-07 13_[-1]_68 chrXIII:195882-196415 1.1e-07 54_[+1]_27 chrXII:92318-92846 1.1e-07 14_[-1]_67 chrXI:578765-579259 2e-07 9_[-1]_72 chrXVI:572015-572538 2.4e-07 41_[-1]_40 chrXV:281921-282396 2.4e-07 54_[-1]_27 chrVIII:237676-238181 3.1e-07 35_[+1]_46 chrII:36203-36595 3.1e-07 55_[-1]_26 chrXVI:622366-622849 3.1e-07 48_[+1]_33 chrXIII:352046-352493 3.1e-07 67_[-1]_14 chrVII:440436-441188 3.1e-07 19_[+1]_62 chrXIV:631704-632117 4e-07 39_[+1]_42 chrVI:162021-162421 4e-07 55_[-1]_26 chrVII:845440-845895 4e-07 30_[-1]_51 chrXVI:860173-860589 4e-07 46_[-1]_35 chrVII:930793-931265 4e-07 26_[+1]_55 chrX:531595-531695 4e-07 3_[-1]_78 chrIII:123395-123813 6.5e-07 76_[+1]_5 chrIII:168113-168566 1e-06 65_[+1]_16 chrV:250089-250562 1e-06 9_[-1]_72 chrXII:5434-5942 1.3e-06 30_[+1]_51 chrVIII:562243-562635 1.3e-06 67_[-1]_14 chrXII:11021-11544 1.3e-06 39_[+1]_42 chrVI:4419-4989 1.3e-06 67_[+1]_14 chrII:326597-327136 1.8e-06 23_[+1]_58 chrXII:1064842-1065358 2.1e-06 33_[-1]_48 chrXII:448481-448968 2.5e-06 29_[+1]_52 chrIV:802551-803027 2.5e-06 45_[+1]_36 chrVIII:134084-134580 2.5e-06 37_[-1]_44 chrIV:644983-645418 2.5e-06 56_[+1]_25 chrXI:28-265 3.3e-06 52_[+1]_29 chrX:390865-390965 4e-06 41_[+1]_40 chrXV:976172-976757 4e-06 13_[-1]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCYTWAMCMACTSGGCCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CSCYTWAMCMACTSGGCCA width=19 seqs=85 chrXIII:259017-259482 ( 15) CGCCTTAACCACTCGGCCA 1 chrIV:1305432-1305912 ( 15) CGCCTTAACCACTCGGCCA 1 chrIII:227735-228204 ( 30) CGCCTTAACCACTCGGCCA 1 chrIV:980823-981274 ( 32) CGCCTTAACCACTCGGCCA 1 chrXII:784154-784598 ( 35) CGCCTTAACCACTCGGCCA 1 chrX:523782-523882 ( 71) CGCCTTAACCACTCGGCCA 1 chrII:226846-227373 ( 23) CGCCTTAACCACTCGGCCA 1 chrVII:561390-561990 ( 78) CGCCTTAACCACTCGGCCA 1 chrX:617704-617804 ( 43) GCCTTAAACCACTCGGCCA 1 chrXII:592362-592884 ( 21) GCCTTAAACCACTCGGCCA 1 chrIX:183276-183707 ( 47) GCCTTAACCAACTGGGCCA 1 chrIV:667784-668282 ( 72) GCCTTAACCAACTGGGCCA 1 chrVII:738874-739357 ( 64) GCCTTAACCAACTGGGCCA 1 chrV:443050-443528 ( 11) GCCTTAACCAACTGGGCCA 1 chrXII:734641-735066 ( 6) GCCTTAACCAACTGGGCCA 1 chrXII:1051867-1052351 ( 60) GCCTTAACCAACTGGGCCA 1 chrXIV:569702-570105 ( 62) GCCTTAACCAACTGGGCCA 1 chrXVI:819287-819768 ( 59) GCCTTAACCAACTGGGCCA 1 chrVIII:115944-116388 ( 38) CGCCTTACCAACTTGGCCA 1 chrII:266170-266676 ( 12) CGCCTTACCAACTTGGCCA 1 chrXIV:560487-561008 ( 43) CGCCTTACCAACTTGGCCA 1 chrX:58952-59052 ( 38) CGCCTTACCAACTTGGCCA 1 chrIX:325524-326031 ( 28) CGCCTTACCAACTTGGCCA 1 chrIII:295283-295758 ( 21) CGCCTTACCAACTTGGCCA 1 chrIV:433991-434592 ( 70) CGCCTTACCAACTTGGCCA 1 chrX:424307-424407 ( 24) GCCTTAGACCACTCGGCCA 1 chrXIV:725972-726431 ( 41) GCCTTAGACCACTCGGCCA 1 chrII:347382-347842 ( 48) GCCTTAGACCACTCGGCCA 1 chrIV:519543-519975 ( 41) GCCTTAGACCACTCGGCCA 1 chrXV:228107-228577 ( 46) GCCTTAACCAACTTGGCCA 1 chrXVI:810423-810922 ( 61) GCCTTAACCAACTTGGCCA 1 chrVII:794182-794644 ( 61) CGCGCTACCAACTGCGCCA 1 chrXV:340126-340573 ( 47) CGCCGTGACCATTGGGCCA 1 chrXI:490751-491204 ( 48) CGCCGTGACCATTGGGCCA 1 chrV:492167-492609 ( 61) CGCCGTGACCATTGGGCCA 1 chrIV:619729-620256 ( 74) CGCCGTGACCATTGGGCCA 1 chrXV:300851-301397 ( 22) CCACTAGACCACACGCCCG 1 chrIV:1461518-1462112 ( 39) GCCTTAGACCGCTCGGCCA 1 chrXIV:567893-568432 ( 2) CCACTAGACCACACGCCCG 1 chrVII:774129-774606 ( 39) CGCGCTACCGACTACGCCA 1 chrXVI:856707-857133 ( 39) CGCGCTACCGACTACGCCA 1 chrXIII:420432-420905 ( 18) GCCATAACCGACTAGACCA 1 chrXI:379482-379898 ( 47) GCCATAACCGACTAGACCA 1 chrVII:823229-823710 ( 70) GCCATAACCGACTAGACCA 1 chrVIII:85162-85586 ( 22) GCCATAACCGACTAGACCA 1 chrXI:308014-308409 ( 31) GCCATAACCGACTAGACCA 1 chrXIII:372261-372748 ( 39) GCCATAACCGACTAGACCA 1 chrXII:687634-688173 ( 54) GCCATAACCGACTAGACCA 1 chrXVI:581867-582368 ( 2) CGCGCTACCGATTGCGCCA 1 chrV:435618-436055 ( 13) CGCGCTACCGATTGCGCCA 1 chrXI:202789-203302 ( 11) CGCGCTACCGATTGCGCCA 1 chrVII:185507-185964 ( 76) CGCGCTACCGATTGCGCCA 1 chrVII:876188-876687 ( 14) CGCGCTACCGATTGCGCCA 1 chrXIII:195882-196415 ( 55) CCACTAGACCACACGCCCT 1 chrXII:92318-92846 ( 15) CCACTAGACCACACGCCCT 1 chrXI:578765-579259 ( 10) CGCTCTACCAACTGAGCTA 1 chrXVI:572015-572538 ( 42) CCACTAAACCACTTGCGCG 1 chrXV:281921-282396 ( 55) CCACTAAACCACTTGCGCG 1 chrVIII:237676-238181 ( 36) CGCTCTCCCAACTGAGCTA 1 chrII:36203-36595 ( 56) CGCTCTCCCAACTGAGCTA 1 chrXVI:622366-622849 ( 49) CGCTCTCCCAACTGAGCTA 1 chrXIII:352046-352493 ( 68) CGCTCTCCCAACTGAGCTA 1 chrVII:440436-441188 ( 20) CGCTCTCCCAACTGAGCTA 1 chrXIV:631704-632117 ( 40) CCTCTAGACCACACGCCCG 1 chrVI:162021-162421 ( 56) CCACTAAACCACTTGCGCT 1 chrVII:845440-845895 ( 31) CCACTAAACCACTTGCGCT 1 chrXVI:860173-860589 ( 47) CCACTAAACCACTTGCGCT 1 chrVII:930793-931265 ( 27) CCACTAAACCACTTGCGCT 1 chrX:531595-531695 ( 4) CCACTAAACCACTTGCGCT 1 chrIII:123395-123813 ( 77) CCTCTAGACCACACGCCCT 1 chrIII:168113-168566 ( 66) CCACTACACTATAGGACCA 1 chrV:250089-250562 ( 10) CCACTACACTATAGGACCA 1 chrXII:5434-5942 ( 31) CCCACACACCACACCCACA 1 chrVIII:562243-562635 ( 68) CCCACACACCACACCCACA 1 chrXII:11021-11544 ( 40) CCCACACACCACACCCACA 1 chrVI:4419-4989 ( 68) CCCACACACCACACCCACA 1 chrII:326597-327136 ( 24) GTCTTGAACCACTGGACCA 1 chrXII:1064842-1065358 ( 34) CCCACACACCACACACACA 1 chrXII:448481-448968 ( 30) CCACTACACTATAGGACCG 1 chrIV:802551-803027 ( 46) CCACTACACTATAGGACCG 1 chrVIII:134084-134580 ( 38) CCACTACACTATAGGACCG 1 chrIV:644983-645418 ( 57) CCACTACACTATAGGACCG 1 chrXI:28-265 ( 53) ACCCTGCCCCACTCAACCA 1 chrX:390865-390965 ( 42) CGCTCTTCCTACTGAGCTA 1 chrXV:976172-976757 ( 14) CGCTCTTCCTACTGAGCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCYTWAMCMACTSGGCCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 19 n= 46412 bayes= 10.0881 E= 3.7e-212 -477 196 72 -1305 -1305 169 121 -477 -69 212 -1305 -377 -119 136 -92 -7 -1305 47 -192 113 81 -1305 -292 36 90 17 -1 -377 69 144 -1305 -1305 -1305 249 -1305 -1305 -19 136 -11 -177 162 -1305 -392 -1305 -1305 221 -1305 -87 -69 -1305 -1305 131 -160 83 112 -77 -145 -34 206 -1305 -87 25 178 -1305 -245 227 -111 -1305 -1305 235 -1305 -177 131 -1305 -75 -177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCYTWAMCMACTSGGCCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 19 nsites= 85 E= 3.7e-212 0.011765 0.694118 0.294118 0.000000 0.000000 0.576471 0.411765 0.011765 0.200000 0.776471 0.000000 0.023529 0.141176 0.458824 0.094118 0.305882 0.000000 0.247059 0.047059 0.705882 0.564706 0.000000 0.023529 0.411765 0.600000 0.200000 0.176471 0.023529 0.517647 0.482353 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.282353 0.458824 0.164706 0.094118 0.988235 0.000000 0.011765 0.000000 0.000000 0.823529 0.000000 0.176471 0.200000 0.000000 0.000000 0.800000 0.105882 0.317647 0.388235 0.188235 0.117647 0.141176 0.741176 0.000000 0.176471 0.211765 0.611765 0.000000 0.058824 0.858824 0.082353 0.000000 0.000000 0.905882 0.000000 0.094118 0.800000 0.000000 0.105882 0.094118 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCYTWAMCMACTSGGCCA MEME-1 regular expression -------------------------------------------------------------------------------- [CG][CG][CA][CT][TC][AT][AC][AC]C[CA]AC[TA][GC]G[GC]CCA -------------------------------------------------------------------------------- Time 313.71 secs. ******************************************************************************** ******************************************************************************** MOTIF SGGRHTCGAACCSVKGAYCTY MEME-2 width = 21 sites = 69 llr = 1182 E-value = 3.0e-214 ******************************************************************************** -------------------------------------------------------------------------------- Motif SGGRHTCGAACCSVKGAYCTY MEME-2 Description -------------------------------------------------------------------------------- Simplified A 12:63:::aa::13:37:1:1 pos.-specific C 4:::2:7:::a9432:15635 probability G 48a41::a::::4447:121: matrix T ::::3a3::::11:4:25163 bits 2.5 * * * 2.2 * * * 2.0 * * * 1.7 * * ** ** Relative 1.5 ** ******* * Entropy 1.2 ** ******* * (24.7 bits) 1.0 ** ******* * 0.7 **** ******** * *** 0.5 **** **************** 0.2 **** **************** 0.0 --------------------- Multilevel GGGAATCGAACCCGGGACCTC consensus C GT T GCTATT CT sequence C A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRHTCGAACCSVKGAYCTY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrIII:123395-123813 + 33 9.88e-15 GGGGCGAGCC GGGACTCGAACCCGGGACCTC CCGCACCCTA chrIX:183276-183707 + 9 2.48e-11 GTCTCTAG CGGGATCGAACCGCTGATCCC CGCGTTATTA chrIV:667784-668282 + 34 2.48e-11 TGGTCTCTAG CGGGATCGAACCGCTGATCCC CGCGTTATTA chrXII:734641-735066 - 42 2.48e-11 TGGTCTCTAG CGGGATCGAACCGCTGATCCC CGCGTTATTA chrXII:1051867-1052351 + 22 2.48e-11 TGGTCTCTAG CGGGATCGAACCGCTGATCCC CGCGTTATTA chrXIV:569702-570105 + 24 2.48e-11 TGGTCTCTAG CGGGATCGAACCGCTGATCCC CGCGTTATTA chrIII:168113-168566 + 22 1.58e-10 AGGTCCTACC CGGATTCGAACCGGGGTTGTC CGGATCAAAA chrIV:802551-803027 + 2 1.58e-10 C CGGATTCGAACCGGGGTTGTC CGGATCAAAA chrVIII:134084-134580 - 80 1.58e-10 . CGGATTCGAACCGGGGTTGTC CGGATCAAAA chrIV:644983-645418 + 13 1.58e-10 AGGTCCTACC CGGATTCGAACCGGGGTTGTC CGGATCAAAA chrV:250089-250562 - 52 1.58e-10 AGGTCCTACC CGGATTCGAACCGGGGTTGTC CGGATCAAAA chrXVI:581867-582368 - 37 1.84e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrVII:774129-774606 - 74 1.84e-10 CGAGTC CGGAATCGAACCGGAGACCTC TCCCATGCTA chrXI:202789-203302 - 46 1.84e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrXVI:856707-857133 - 74 1.84e-10 CGAGTC CGGAATCGAACCGGAGACCTC TCCCATGCTA chrVII:185507-185964 + 39 1.84e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrVII:876188-876687 - 49 1.84e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrV:135162-135714 + 47 1.84e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrVII:541581-542174 - 64 3.33e-10 CTCCGATACG GGGAGTCGAACCCCGGTCTCC ACGGTGAAAG chrXVI:209902-210482 + 60 3.33e-10 CTCCGATACG GGGAGTCGAACCCCGGTCTCC ACGGTGAAAG chrV:487166-487592 + 12 3.33e-10 CTCCGATACG GGGAGTCGAACCCCGGTCTCC ACGGTGAAAG chrXI:140782-141327 + 24 3.33e-10 CTCCGATACG GGGAGTCGAACCCCGGTCTCC ACGGTGAAAG chrXIV:96044-96505 + 27 4.39e-10 TGAGCGGTAC GAGAATCGAACCCGTGTCCCC ACCTTGGAAG chrVIII:115944-116388 + 1 5.75e-10 . CGGATTTGAACCGATGATCTC CACATTACTA chrII:266170-266676 - 47 5.75e-10 TGCTTCCAAT CGGATTTGAACCGATGATCTC CACATTACTA chrXIV:560487-561008 + 6 5.75e-10 CCAAT CGGATTTGAACCGATGATCTC CACATTACTA chrX:58952-59052 + 1 5.75e-10 . CGGATTTGAACCGATGATCTC CACATTACTA chrIX:325524-326031 - 63 5.75e-10 TGCTTCCAAT CGGATTTGAACCGATGATCTC CACATTACTA chrIX:174831-175351 - 32 5.75e-10 TGCTTCCAAT CGGATTTGAACCGATGATCTC CACATTACTA chrIII:295283-295758 - 56 5.75e-10 TGCTTCCAAT CGGATTTGAACCGATGATCTC CACATTACTA chrIV:433991-434592 + 33 5.75e-10 TGCTTCCAAT CGGATTTGAACCGATGATCTC CACATTACTA chrXI:46553-47002 + 18 6.58e-10 TGCCCTCTGT GGGAATTGAACCCACGATCCC CGCATTACGA chrXVI:768968-769514 + 26 8.54e-10 CTCCTCATAG GGGGCTCGAACCCCTGACATT TCGGTATCCT chrXIV:567893-568432 - 75 8.54e-10 GAGCT GGGAATTGAACCCAGGGCCTC TCGCATGCTT chrXI:578765-579259 - 68 8.54e-10 CTCCTCATAG GGGGCTCGAACCCCTGACATT TCGGTATCCT chrVII:845440-845895 - 72 1.41e-09 CGCAAGCC CGGAATCGAACCGGGGGCCCA ACGATGGCAA chrX:531595-531695 - 45 1.41e-09 TGCGCAAGCC CGGAATCGAACCGGGGGCCCA ACGATGGCAA chrV:138436-139017 - 31 1.59e-09 CACTCACGAT GGGGGTCGAACCCATAATCTT CTGATTAGAA chrVII:828500-828997 + 35 1.59e-09 CACTCACGAT GGGGGTCGAACCCATAATCTT CTGATTAGAA chrVII:736145-736631 - 43 1.59e-09 CACTCACGAT GGGGGTCGAACCCATAATCTT CTGATTAGAA chrIV:568672-569203 - 36 1.59e-09 CACTCACGAT GGGGGTCGAACCCATAATCTT CTGATTAGAA chrII:405625-406197 - 58 1.59e-09 CACTCACGAT GGGGGTCGAACCCATAATCTT CTGATTAGAA chrIV:1075297-1075735 + 16 2.88e-09 TGTTCCAACC GAGGATCGAACTCGGGACCTT TGCCGTGTGA chrIV:488512-489084 + 59 6.87e-09 TGATCCAACC GAGGTTCGAACTCGGGATCTT CGCCGTGTAA chrXIII:372261-372748 + 1 1.38e-08 . CAGGATCGAACTGGGGACGTT CTGCGTGTTA chrXII:687634-688173 + 16 1.38e-08 TGATTTCGCC CAGGATCGAACTGGGGACGTT CTGCGTGTTA chrXII:818426-818829 - 73 2.21e-08 TCCTCCC GGGACTCGAACCCGGATCACA GCCACCGGAA chrXV:340126-340573 + 10 3.77e-08 TTCCCCGCC AGGACTTGAACCTGGAATCTT CTGGTTCGTA chrV:492167-492609 + 24 3.77e-08 CTTCCCCGCC AGGACTTGAACCTGGAATCTT CTGGTTCGTA chrIV:619729-620256 + 37 3.77e-08 CTTCCCCGCC AGGACTTGAACCTGGAATCTT CTGGTTCGTA chrXVI:55865-56541 + 26 7.29e-08 TGAAACGGAC AGGAATTGAACCTGCAACCCT TCGATTGCAA chrX:390865-390965 + 5 9.22e-08 AGGG GAGGTTCGAACTCTCGACCTT CAGATTATGA chrIV:1175617-1176185 - 20 9.22e-08 TGCTCCAGGG GAGGTTCGAACTCTCGACCTT CAGATTATGA chrXV:976172-976757 - 49 9.22e-08 TGCTCCAGGG GAGGTTCGAACTCTCGACCTT CAGATTATGA chrIV:946093-946620 - 64 1.34e-07 TCTCCCGGGG GCGAGTCGAACGCCCGATCTC AAGATTTCGT chrIV:1095133-1095652 + 38 1.45e-07 TGCGAACTCT GTGGATCGAACACAGGACCTC CAGATATCTT chrXIII:463351-463921 - 9 1.55e-07 CTCCGCGACG GGGAATTGAACCCCGATCTGG CACGCGAC chrX:541293-541393 - 63 1.55e-07 CTCCGCGACG GGGAATTGAACCCCGATCTGG CACGCGACAA chrVII:544365-544869 + 20 1.55e-07 CTCCGCGACG GGGAATTGAACCCCGATCTGG CACGCGACAA chrX:517653-517753 + 11 1.92e-07 TAGCGCCGCT CGGTTTCGATCCGAGGACATC AGGGTTATGA chrV:99906-100387 - 78 1.92e-07 CT CGGTTTCGATCCGAGGACATC AGGGTTATGA chrIV:1305432-1305912 - 60 2.53e-07 CGACAACTGC AGGACTCGAACCTGCGCGGGC CAAAGCCCAA chrX:523782-523882 + 25 2.53e-07 CGACAACTGC AGGACTCGAACCTGCGCGGGC AAAGCCCAAA chrII:226846-227373 - 67 2.53e-07 CGACAACTGC AGGACTCGAACCTGCGCGGGC AAAGCCCAAA chrVII:561390-561990 + 32 2.53e-07 CGACAACTGC AGGACTCGAACCTGCGCGGGC AAAGCCCAAA chrXVI:744090-744560 - 50 4.24e-07 TGCCACCTGT CAGAATTGAACTAACGACCTT TGCATTACAA chrV:434355-434816 + 16 1.32e-06 TGCCATCTCC TAGAATCGAACCAGGGTTTCA TCGGCCACAA chrV:207121-207653 - 61 1.32e-06 TGCCATCTCC TAGAATCGAACCAGGGTTTCA TCGGCCACAA chrXIII:362825-363335 - 75 1.32e-06 TCTCC TAGAATCGAACCAGGGTTTCA TCGGCCACAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRHTCGAACCSVKGAYCTY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123395-123813 9.9e-15 32_[+2]_47 chrIX:183276-183707 2.5e-11 8_[+2]_71 chrIV:667784-668282 2.5e-11 33_[+2]_46 chrXII:734641-735066 2.5e-11 41_[-2]_38 chrXII:1051867-1052351 2.5e-11 21_[+2]_58 chrXIV:569702-570105 2.5e-11 23_[+2]_56 chrIII:168113-168566 1.6e-10 21_[+2]_58 chrIV:802551-803027 1.6e-10 1_[+2]_78 chrVIII:134084-134580 1.6e-10 79_[-2] chrIV:644983-645418 1.6e-10 12_[+2]_67 chrV:250089-250562 1.6e-10 51_[-2]_28 chrXVI:581867-582368 1.8e-10 36_[-2]_43 chrVII:774129-774606 1.8e-10 73_[-2]_6 chrXI:202789-203302 1.8e-10 45_[-2]_34 chrXVI:856707-857133 1.8e-10 73_[-2]_6 chrVII:185507-185964 1.8e-10 38_[+2]_41 chrVII:876188-876687 1.8e-10 48_[-2]_31 chrV:135162-135714 1.8e-10 46_[+2]_33 chrVII:541581-542174 3.3e-10 63_[-2]_16 chrXVI:209902-210482 3.3e-10 59_[+2]_20 chrV:487166-487592 3.3e-10 11_[+2]_68 chrXI:140782-141327 3.3e-10 23_[+2]_56 chrXIV:96044-96505 4.4e-10 26_[+2]_53 chrVIII:115944-116388 5.8e-10 [+2]_79 chrII:266170-266676 5.8e-10 46_[-2]_33 chrXIV:560487-561008 5.8e-10 5_[+2]_74 chrX:58952-59052 5.8e-10 [+2]_79 chrIX:325524-326031 5.8e-10 62_[-2]_17 chrIX:174831-175351 5.8e-10 31_[-2]_48 chrIII:295283-295758 5.8e-10 55_[-2]_24 chrIV:433991-434592 5.8e-10 32_[+2]_47 chrXI:46553-47002 6.6e-10 17_[+2]_62 chrXVI:768968-769514 8.5e-10 25_[+2]_54 chrXIV:567893-568432 8.5e-10 74_[-2]_5 chrXI:578765-579259 8.5e-10 67_[-2]_12 chrVII:845440-845895 1.4e-09 71_[-2]_8 chrX:531595-531695 1.4e-09 44_[-2]_35 chrV:138436-139017 1.6e-09 30_[-2]_49 chrVII:828500-828997 1.6e-09 34_[+2]_45 chrVII:736145-736631 1.6e-09 42_[-2]_37 chrIV:568672-569203 1.6e-09 35_[-2]_44 chrII:405625-406197 1.6e-09 57_[-2]_22 chrIV:1075297-1075735 2.9e-09 15_[+2]_64 chrIV:488512-489084 6.9e-09 58_[+2]_21 chrXIII:372261-372748 1.4e-08 [+2]_79 chrXII:687634-688173 1.4e-08 15_[+2]_64 chrXII:818426-818829 2.2e-08 72_[-2]_7 chrXV:340126-340573 3.8e-08 9_[+2]_70 chrV:492167-492609 3.8e-08 23_[+2]_56 chrIV:619729-620256 3.8e-08 36_[+2]_43 chrXVI:55865-56541 7.3e-08 25_[+2]_54 chrX:390865-390965 9.2e-08 4_[+2]_75 chrIV:1175617-1176185 9.2e-08 19_[-2]_60 chrXV:976172-976757 9.2e-08 48_[-2]_31 chrIV:946093-946620 1.3e-07 63_[-2]_16 chrIV:1095133-1095652 1.4e-07 37_[+2]_42 chrXIII:463351-463921 1.6e-07 8_[-2]_71 chrX:541293-541393 1.6e-07 62_[-2]_17 chrVII:544365-544869 1.6e-07 19_[+2]_60 chrX:517653-517753 1.9e-07 10_[+2]_69 chrV:99906-100387 1.9e-07 77_[-2]_2 chrIV:1305432-1305912 2.5e-07 59_[-2]_20 chrX:523782-523882 2.5e-07 24_[+2]_55 chrII:226846-227373 2.5e-07 66_[-2]_13 chrVII:561390-561990 2.5e-07 31_[+2]_48 chrXVI:744090-744560 4.2e-07 49_[-2]_30 chrV:434355-434816 1.3e-06 15_[+2]_64 chrV:207121-207653 1.3e-06 60_[-2]_19 chrXIII:362825-363335 1.3e-06 74_[-2]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRHTCGAACCSVKGAYCTY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SGGRHTCGAACCSVKGAYCTY width=21 seqs=69 chrIII:123395-123813 ( 33) GGGACTCGAACCCGGGACCTC 1 chrIX:183276-183707 ( 9) CGGGATCGAACCGCTGATCCC 1 chrIV:667784-668282 ( 34) CGGGATCGAACCGCTGATCCC 1 chrXII:734641-735066 ( 42) CGGGATCGAACCGCTGATCCC 1 chrXII:1051867-1052351 ( 22) CGGGATCGAACCGCTGATCCC 1 chrXIV:569702-570105 ( 24) CGGGATCGAACCGCTGATCCC 1 chrIII:168113-168566 ( 22) CGGATTCGAACCGGGGTTGTC 1 chrIV:802551-803027 ( 2) CGGATTCGAACCGGGGTTGTC 1 chrVIII:134084-134580 ( 80) CGGATTCGAACCGGGGTTGTC 1 chrIV:644983-645418 ( 13) CGGATTCGAACCGGGGTTGTC 1 chrV:250089-250562 ( 52) CGGATTCGAACCGGGGTTGTC 1 chrXVI:581867-582368 ( 37) GGGGCTCGAACCCCTAACCTT 1 chrVII:774129-774606 ( 74) CGGAATCGAACCGGAGACCTC 1 chrXI:202789-203302 ( 46) GGGGCTCGAACCCCTAACCTT 1 chrXVI:856707-857133 ( 74) CGGAATCGAACCGGAGACCTC 1 chrVII:185507-185964 ( 39) GGGGCTCGAACCCCTAACCTT 1 chrVII:876188-876687 ( 49) GGGGCTCGAACCCCTAACCTT 1 chrV:135162-135714 ( 47) GGGGCTCGAACCCCTAACCTT 1 chrVII:541581-542174 ( 64) GGGAGTCGAACCCCGGTCTCC 1 chrXVI:209902-210482 ( 60) GGGAGTCGAACCCCGGTCTCC 1 chrV:487166-487592 ( 12) GGGAGTCGAACCCCGGTCTCC 1 chrXI:140782-141327 ( 24) GGGAGTCGAACCCCGGTCTCC 1 chrXIV:96044-96505 ( 27) GAGAATCGAACCCGTGTCCCC 1 chrVIII:115944-116388 ( 1) CGGATTTGAACCGATGATCTC 1 chrII:266170-266676 ( 47) CGGATTTGAACCGATGATCTC 1 chrXIV:560487-561008 ( 6) CGGATTTGAACCGATGATCTC 1 chrX:58952-59052 ( 1) CGGATTTGAACCGATGATCTC 1 chrIX:325524-326031 ( 63) CGGATTTGAACCGATGATCTC 1 chrIX:174831-175351 ( 32) CGGATTTGAACCGATGATCTC 1 chrIII:295283-295758 ( 56) CGGATTTGAACCGATGATCTC 1 chrIV:433991-434592 ( 33) CGGATTTGAACCGATGATCTC 1 chrXI:46553-47002 ( 18) GGGAATTGAACCCACGATCCC 1 chrXVI:768968-769514 ( 26) GGGGCTCGAACCCCTGACATT 1 chrXIV:567893-568432 ( 75) GGGAATTGAACCCAGGGCCTC 1 chrXI:578765-579259 ( 68) GGGGCTCGAACCCCTGACATT 1 chrVII:845440-845895 ( 72) CGGAATCGAACCGGGGGCCCA 1 chrX:531595-531695 ( 45) CGGAATCGAACCGGGGGCCCA 1 chrV:138436-139017 ( 31) GGGGGTCGAACCCATAATCTT 1 chrVII:828500-828997 ( 35) GGGGGTCGAACCCATAATCTT 1 chrVII:736145-736631 ( 43) GGGGGTCGAACCCATAATCTT 1 chrIV:568672-569203 ( 36) GGGGGTCGAACCCATAATCTT 1 chrII:405625-406197 ( 58) GGGGGTCGAACCCATAATCTT 1 chrIV:1075297-1075735 ( 16) GAGGATCGAACTCGGGACCTT 1 chrIV:488512-489084 ( 59) GAGGTTCGAACTCGGGATCTT 1 chrXIII:372261-372748 ( 1) CAGGATCGAACTGGGGACGTT 1 chrXII:687634-688173 ( 16) CAGGATCGAACTGGGGACGTT 1 chrXII:818426-818829 ( 73) GGGACTCGAACCCGGATCACA 1 chrXV:340126-340573 ( 10) AGGACTTGAACCTGGAATCTT 1 chrV:492167-492609 ( 24) AGGACTTGAACCTGGAATCTT 1 chrIV:619729-620256 ( 37) AGGACTTGAACCTGGAATCTT 1 chrXVI:55865-56541 ( 26) AGGAATTGAACCTGCAACCCT 1 chrX:390865-390965 ( 5) GAGGTTCGAACTCTCGACCTT 1 chrIV:1175617-1176185 ( 20) GAGGTTCGAACTCTCGACCTT 1 chrXV:976172-976757 ( 49) GAGGTTCGAACTCTCGACCTT 1 chrIV:946093-946620 ( 64) GCGAGTCGAACGCCCGATCTC 1 chrIV:1095133-1095652 ( 38) GTGGATCGAACACAGGACCTC 1 chrXIII:463351-463921 ( 9) GGGAATTGAACCCCGATCTGG 1 chrX:541293-541393 ( 63) GGGAATTGAACCCCGATCTGG 1 chrVII:544365-544869 ( 20) GGGAATTGAACCCCGATCTGG 1 chrX:517653-517753 ( 11) CGGTTTCGATCCGAGGACATC 1 chrV:99906-100387 ( 78) CGGTTTCGATCCGAGGACATC 1 chrIV:1305432-1305912 ( 60) AGGACTCGAACCTGCGCGGGC 1 chrX:523782-523882 ( 25) AGGACTCGAACCTGCGCGGGC 1 chrII:226846-227373 ( 67) AGGACTCGAACCTGCGCGGGC 1 chrVII:561390-561990 ( 32) AGGACTCGAACCTGCGCGGGC 1 chrXVI:744090-744560 ( 50) CAGAATTGAACTAACGACCTT 1 chrV:434355-434816 ( 16) TAGAATCGAACCAGGGTTTCA 1 chrV:207121-207653 ( 61) TAGAATCGAACCAGGGTTTCA 1 chrXIII:362825-363335 ( 75) TAGAATCGAACCAGGGTTTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRHTCGAACCSVKGAYCTY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 45280 bayes= 9.44215 E= 3.0e-214 -147 113 133 -289 -89 -362 216 -447 -1275 -1275 249 -1275 92 -1275 102 -347 11 38 -30 -22 -1275 -1275 -1275 164 -1275 205 -1275 -30 -1275 -1275 249 -1275 164 -1275 -1275 -1275 159 -1275 -1275 -347 -1275 249 -1275 -1275 -447 226 -362 -147 -247 133 108 -147 -22 70 113 -289 -347 -16 129 23 -30 -1275 205 -1275 102 -162 -203 -39 -1275 142 -162 53 -215 181 -16 -115 -1275 55 -81 99 -189 155 -203 11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRHTCGAACCSVKGAYCTY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 69 E= 3.0e-214 0.115942 0.391304 0.449275 0.043478 0.173913 0.014493 0.797101 0.014493 0.000000 0.000000 1.000000 0.000000 0.608696 0.000000 0.362319 0.028986 0.347826 0.231884 0.144928 0.275362 0.000000 0.000000 0.000000 1.000000 0.000000 0.739130 0.000000 0.260870 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.971014 0.000000 0.000000 0.028986 0.000000 1.000000 0.000000 0.000000 0.014493 0.855072 0.014493 0.115942 0.057971 0.449275 0.376812 0.115942 0.275362 0.289855 0.391304 0.043478 0.028986 0.159420 0.434783 0.376812 0.260870 0.000000 0.739130 0.000000 0.652174 0.057971 0.043478 0.246377 0.000000 0.478261 0.057971 0.463768 0.072464 0.623188 0.159420 0.144928 0.000000 0.260870 0.101449 0.637681 0.086957 0.521739 0.043478 0.347826 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRHTCGAACCSVKGAYCTY MEME-2 regular expression -------------------------------------------------------------------------------- [GC]GG[AG][ATC]T[CT]GAACC[CG][GCA][GT][GA][AT][CT]C[TC][CT] -------------------------------------------------------------------------------- Time 596.14 secs. ******************************************************************************** ******************************************************************************** MOTIF CVRAMGCKCTACCAYTRMGCCACSGVDKC MEME-3 width = 29 sites = 14 llr = 384 E-value = 1.3e-053 ******************************************************************************** -------------------------------------------------------------------------------- Motif CVRAMGCKCTACCAYTRMGCCACSGVDKC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :2583:::::6::a::45:::a31123:: pos.-specific C 74:16:a17::aa:5::4:a8:6334:19 probability G 3341:a:4::2:::::51a::::66446: matrix T :11:1::53a1:::5a1:::2:1:::331 bits 2.5 ** ** ** 2.2 ** ** ** 2.0 ** ** ** 1.7 * ** * *** * ** * * Relative 1.5 * ** ** *** * **** * Entropy 1.2 * ** ** *** * **** * * (39.6 bits) 1.0 * * ** ** ***** ******* * 0.7 * ******* *************** ** 0.5 ***************************** 0.2 ***************************** 0.0 ----------------------------- Multilevel CCAACGCTCTACCACTGAGCCACGGCGGC consensus GGG A GT G T AC T ACCGAT sequence A AT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVRAMGCKCTACCAYTRMGCCACSGVDKC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXIII:379149-379599 + 56 2.70e-14 TAATTGGAGT CGAAAGCTCTACCATTGAGCCACCGCTTC AACTTTTATT chrVII:287174-287678 + 51 2.70e-14 TAATTGGAGT CGAAAGCTCTACCATTGAGCCACCGCTTC ATCTTGAAAT chrXI:302644-303276 - 8 2.70e-14 TAATTGGAGT CGAAAGCTCTACCATTGAGCCACCGCTTC ATCTTGG chrX:415805-415905 + 2 2.70e-14 T CGAAAGCTCTACCATTGAGCCACCGCTTC AACTTTTGTT chrVII:828500-828997 + 68 3.38e-14 GATTAGAAGT CAGACGCGTTGCCATTACGCCACGCGAGC TACT chrVII:736145-736631 - 2 3.38e-14 GATTAGAAGT CAGACGCGTTGCCATTACGCCACGCGAGC T chrII:405625-406197 - 17 3.38e-14 GATTAGAAGT CAGACGCGTTGCCATTACGCCACGCGAGC TACTATTTGT chrVII:661515-661939 - 72 7.15e-14 . GCAACGCTCTACCACTAAGCTAAGGAGGC AAATTTTTAC chrXVI:744090-744560 - 9 7.15e-14 CATTACAAGT GCAACGCTCTACCACTAAGCTAAGGAGGC TTTTACAC chrVIII:466751-467245 - 42 7.15e-14 CATTACAAGT GCAACGCTCTACCACTAAGCTAAGGAGGC TAAAAATACA chrX:517653-517753 + 44 1.18e-13 GGTTATGAGC CCTGCGCGCTTCCACTGCGCCACGGCGCT TAACTTTTAT chrV:99906-100387 - 37 1.18e-13 GGTTATGAGC CCTGCGCGCTTCCACTGCGCCACGGCGCT TAGCCAACTT chrXVI:775627-776034 + 28 8.86e-12 GATTTGCAAT CTGCTGCGCTACCACTGCGCCATACGAGC TTTTGAATTA chrXI:46553-47002 + 51 5.99e-11 CATTACGAGT GCGATGCCTTACCACTTGGCCAAAAGGGC TGAGTAATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVRAMGCKCTACCAYTRMGCCACSGVDKC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:379149-379599 2.7e-14 55_[+3]_16 chrVII:287174-287678 2.7e-14 50_[+3]_21 chrXI:302644-303276 2.7e-14 7_[-3]_64 chrX:415805-415905 2.7e-14 1_[+3]_70 chrVII:828500-828997 3.4e-14 67_[+3]_4 chrVII:736145-736631 3.4e-14 1_[-3]_70 chrII:405625-406197 3.4e-14 16_[-3]_55 chrVII:661515-661939 7.1e-14 71_[-3] chrXVI:744090-744560 7.1e-14 8_[-3]_63 chrVIII:466751-467245 7.1e-14 41_[-3]_30 chrX:517653-517753 1.2e-13 43_[+3]_28 chrV:99906-100387 1.2e-13 36_[-3]_35 chrXVI:775627-776034 8.9e-12 27_[+3]_44 chrXI:46553-47002 6e-11 50_[+3]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVRAMGCKCTACCAYTRMGCCACSGVDKC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CVRAMGCKCTACCAYTRMGCCACSGVDKC width=29 seqs=14 chrXIII:379149-379599 ( 56) CGAAAGCTCTACCATTGAGCCACCGCTTC 1 chrVII:287174-287678 ( 51) CGAAAGCTCTACCATTGAGCCACCGCTTC 1 chrXI:302644-303276 ( 8) CGAAAGCTCTACCATTGAGCCACCGCTTC 1 chrX:415805-415905 ( 2) CGAAAGCTCTACCATTGAGCCACCGCTTC 1 chrVII:828500-828997 ( 68) CAGACGCGTTGCCATTACGCCACGCGAGC 1 chrVII:736145-736631 ( 2) CAGACGCGTTGCCATTACGCCACGCGAGC 1 chrII:405625-406197 ( 17) CAGACGCGTTGCCATTACGCCACGCGAGC 1 chrVII:661515-661939 ( 72) GCAACGCTCTACCACTAAGCTAAGGAGGC 1 chrXVI:744090-744560 ( 9) GCAACGCTCTACCACTAAGCTAAGGAGGC 1 chrVIII:466751-467245 ( 42) GCAACGCTCTACCACTAAGCTAAGGAGGC 1 chrX:517653-517753 ( 44) CCTGCGCGCTTCCACTGCGCCACGGCGCT 1 chrV:99906-100387 ( 37) CCTGCGCGCTTCCACTGCGCCACGGCGCT 1 chrXVI:775627-776034 ( 28) CTGCTGCGCTACCACTGCGCCATACGAGC 1 chrXI:46553-47002 ( 51) GCGATGCCTTACCACTTGGCCAAAAGGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVRAMGCKCTACCAYTRMGCCACSGVDKC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 40752 bayes= 12.7294 E= 1.3e-053 -1045 200 68 -1045 -59 127 68 -217 64 -1045 100 -117 129 -132 -32 -1045 -17 168 -1045 -117 -1045 -1045 249 -1045 -1045 249 -1045 -1045 -1045 -132 127 64 -1045 200 -1045 -17 -1045 -1045 -1045 164 100 -1045 27 -117 -1045 249 -1045 -1045 -1045 249 -1045 -1045 164 -1045 -1045 -1045 -1045 149 -1045 64 -1045 -1045 -1045 164 41 -1045 149 -217 64 127 -132 -1045 -1045 -1045 249 -1045 -1045 249 -1045 -1045 -1045 214 -1045 -59 164 -1045 -1045 -1045 -17 185 -1045 -217 -117 68 168 -1045 -217 68 185 -1045 -59 127 100 -1045 -17 -1045 127 -17 -1045 -32 168 -17 -1045 227 -1045 -117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVRAMGCKCTACCAYTRMGCCACSGVDKC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 14 E= 1.3e-053 0.000000 0.714286 0.285714 0.000000 0.214286 0.428571 0.285714 0.071429 0.500000 0.000000 0.357143 0.142857 0.785714 0.071429 0.142857 0.000000 0.285714 0.571429 0.000000 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.071429 0.428571 0.500000 0.000000 0.714286 0.000000 0.285714 0.000000 0.000000 0.000000 1.000000 0.642857 0.000000 0.214286 0.142857 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.428571 0.000000 0.500000 0.071429 0.500000 0.428571 0.071429 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.785714 0.000000 0.214286 1.000000 0.000000 0.000000 0.000000 0.285714 0.642857 0.000000 0.071429 0.142857 0.285714 0.571429 0.000000 0.071429 0.285714 0.642857 0.000000 0.214286 0.428571 0.357143 0.000000 0.285714 0.000000 0.428571 0.285714 0.000000 0.142857 0.571429 0.285714 0.000000 0.857143 0.000000 0.142857 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVRAMGCKCTACCAYTRMGCCACSGVDKC MEME-3 regular expression -------------------------------------------------------------------------------- [CG][CGA][AG]A[CA]GC[TG][CT]T[AG]CCA[CT]T[GA][AC]GC[CT]A[CA][GC][GC][CGA][GAT][GT]C -------------------------------------------------------------------------------- Time 873.58 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:382910-383571 8.10e-01 100 chrV:143814-144149 5.95e-01 100 chrXII:91476-91920 3.36e-01 100 chrXI:46553-47002 5.03e-14 17_[+2(6.58e-10)]_12_[+3(5.99e-11)]_\ 21 chrXV:117619-117853 9.97e-01 100 chrV:305657-306207 3.31e-01 100 chrXII:818784-819186 6.09e-01 100 chrV:52687-53131 2.86e-01 100 chrXII:793713-795285 9.90e-01 100 chrXI:355955-356542 3.35e-01 100 chrVII:702944-703276 9.32e-01 100 chrVII:879718-879976 5.38e-01 100 chrV:6161-6574 6.80e-01 100 chrIV:308010-308396 6.10e-01 100 chrV:423751-423975 4.51e-02 [-1(5.35e-05)]_81 chrVII:561390-561990 1.70e-11 31_[+2(2.53e-07)]_25_[+1(1.68e-11)]_\ 4 chrII:614650-615094 2.46e-01 100 chrXIV:461835-462308 4.90e-01 100 chrVIII:451515-451997 1.02e-04 22_[-3(2.85e-05)]_26_[+2(1.15e-05)]_\ 2 chrV:85132-85494 1.30e-01 100 chrXII:638392-638886 3.42e-01 100 chrII:226846-227373 2.91e-12 22_[-1(1.68e-11)]_25_[-2(2.53e-07)]_\ 13 chrXVI:699921-700381 2.97e-02 100 chrII:235125-235394 9.96e-01 100 chrIII:177148-177570 8.60e-01 100 chrIV:490907-491289 2.82e-01 100 chrII:255423-255867 1.17e-01 100 chrXV:900064-900376 9.91e-02 68_[-3(3.55e-05)]_3 chrXII:650961-651282 9.85e-01 100 chrIV:1169887-1170331 9.39e-01 100 chrIV:915972-916195 6.53e-01 100 chrVII:856450-857079 2.94e-01 100 chrXII:898769-898929 9.33e-01 100 chrV:423078-423477 6.78e-01 100 chrVII:440436-441188 2.31e-03 19_[+1(3.09e-07)]_62 chrXV:889368-889812 9.79e-01 100 chrV:250089-250562 7.60e-11 9_[-1(1.03e-06)]_23_[-2(1.58e-10)]_\ 28 chrXII:952395-952839 2.64e-02 100 chrXI:140782-141327 1.75e-06 23_[+2(3.33e-10)]_56 chrV:307172-307473 2.46e-01 100 chrXII:369253-370040 8.53e-01 100 chrXIV:229694-230175 9.59e-01 100 chrX:606300-606400 4.89e-02 74_[-1(8.26e-05)]_7 chrXV:417884-418133 3.37e-01 100 chrIX:256599-257043 1.53e-01 100 chrII:101-212 2.17e-01 100 chrIV:753217-753661 1.00e+00 100 chrV:29184-29628 8.34e-01 100 chrXII:712990-713576 6.30e-01 100 chrXII:232504-233900 3.35e-02 40_[-2(6.15e-05)]_39 chrII:407669-408113 9.46e-01 100 chrX:523782-523882 6.73e-12 24_[+2(2.53e-07)]_25_[+1(1.68e-11)]_\ 11 chrVII:476464-476908 8.73e-01 100 chrXIV:64124-64267 9.02e-01 100 chrXIII:224060-224381 2.24e-01 100 chrXVI:280701-281906 1.73e-01 100 chrV:362782-363226 6.29e-01 100 chrIV:519543-519975 6.35e-08 40_[-1(5.76e-10)]_41 chrIV:1442292-1442736 4.34e-01 100 chrXII:687634-688173 2.41e-09 15_[+2(1.38e-08)]_17_[+1(9.17e-08)]_\ 28 chrV:102266-102482 8.82e-01 100 chrII:168634-168812 3.46e-01 100 chrII:613903-614019 9.54e-01 100 chrV:51980-52504 9.44e-01 100 chrV:99906-100387 9.67e-15 36_[-3(1.18e-13)]_12_[-2(1.92e-07)]_\ 2 chrXIII:754417-754822 5.60e-01 100 chrII:347382-347842 6.35e-08 47_[-1(5.76e-10)]_34 chrIV:472980-473424 5.62e-01 100 chrVII:846672-846806 4.91e-01 100 chrXIII:732003-732421 8.66e-01 100 chrXVI:246621-246772 9.30e-03 54_[+2(1.32e-05)]_25 chrXI:558939-559385 1.54e-01 100 chrX:453411-453511 6.25e-01 100 chrXV:409733-409929 9.93e-01 100 chrXV:367671-367839 2.80e-01 100 chrIV:433991-434592 1.92e-13 32_[+2(5.75e-10)]_16_[+1(4.00e-10)]_\ 12 chrXII:784154-784598 2.88e-09 34_[-1(1.68e-11)]_47 chrXV:903945-904818 3.96e-01 100 chrIV:644983-645418 1.77e-10 12_[+2(1.58e-10)]_23_[+1(2.55e-06)]_\ 25 chrII:88965-89409 1.00e+00 100 chrV:430977-431597 2.26e-01 100 chrXVI:577419-577593 9.18e-01 100 chrV:487166-487592 1.75e-06 11_[+2(3.33e-10)]_68 chrIV:1147043-1147487 9.77e-01 100 chrXVI:431754-432089 8.92e-01 100 chrV:66991-67282 6.63e-01 100 chrXII:781430-781909 1.94e-01 100 chrII:393895-394339 4.95e-01 100 chrXVI:783065-783509 4.38e-01 100 chrX:391875-391975 1.38e-02 [-3(9.26e-05)]_71 chrIII:178326-178742 9.43e-01 100 chrII:414880-415023 7.16e-02 100 chrXI:556289-556733 8.27e-01 100 chrX:139114-139214 8.42e-01 100 chrXIII:892856-893010 9.95e-01 100 chrXV:671089-671409 2.20e-01 100 chrV:306448-306892 7.16e-02 100 chrXIII:362825-363335 3.61e-03 74_[-2(1.32e-06)]_5 chrX:531595-531695 4.57e-10 3_[-1(3.99e-07)]_22_[-2(1.41e-09)]_\ 35 chrII:478973-479317 9.72e-01 100 chrIII:295283-295758 1.92e-13 20_[-1(4.00e-10)]_16_[-2(5.75e-10)]_\ 24 chrVII:439207-439438 8.57e-02 47_[-2(4.69e-05)]_32 chrXII:233931-234139 8.99e-01 100 chrV:408828-409272 7.48e-01 100 chrXI:109726-110003 6.79e-01 100 chrXII:637516-637674 2.62e-01 100 chrII:792512-792848 6.54e-01 100 chrXIII:753113-753557 2.81e-01 100 chrVII:477383-477827 1.06e-02 76_[-1(2.61e-05)]_5 chrXV:905661-906105 6.94e-01 100 chrV:488322-488550 3.98e-01 100 chrXV:94466-94848 9.44e-01 100 chrXVI:819287-819768 3.80e-07 58_[-1(3.39e-10)]_23 chrXIV:569702-570105 5.65e-15 23_[+2(2.48e-11)]_17_[+1(3.39e-10)]_\ 20 chrXI:578765-579259 1.46e-11 9_[-1(1.97e-07)]_39_[-2(8.54e-10)]_\ 12 chrIX:255748-256033 2.65e-01 100 chrXII:856688-857174 1.37e-01 100 chrIV:1360767-1361123 7.26e-01 100 chrXIV:567893-568432 3.06e-12 1_[-1(6.08e-08)]_54_[-2(8.54e-10)]_\ 5 chrII:374956-375106 7.33e-01 100 chrVIII:466751-467245 3.33e-10 41_[-3(7.15e-14)]_30 chrXII:636662-636827 2.52e-01 100 chrVIII:381436-382106 1.73e-02 56_[-3(2.10e-05)]_15 chrXIV:783829-784191 6.94e-03 52_[-3(5.26e-05)]_19 chrII:197265-197910 9.38e-02 100 chrXII:1051867-1052351 5.65e-15 21_[+2(2.48e-11)]_17_[+1(3.39e-10)]_\ 22 chrXII:198434-198878 3.54e-01 100 chrXIII:753051-753307 9.53e-01 100 chrXV:622095-622387 7.02e-01 100 chrXV:1003939-1004426 2.64e-02 100 chrXIV:576937-577245 8.02e-01 100 chrXVI:575482-575644 6.66e-01 100 chrXV:93834-94354 7.14e-01 100 chrII:604119-604573 4.67e-01 100 chrVIII:472506-472674 8.80e-01 100 chrIV:1202511-1202622 1.70e-01 100 chrXII:673647-674311 9.78e-01 100 chrVII:366072-366704 8.32e-01 100 chrVI:4419-4989 5.30e-03 38_[+1(7.17e-05)]_10_[+1(1.29e-06)]_\ 14 chrII:165050-165674 6.12e-01 100 chrIV:980823-981274 6.76e-08 31_[+1(1.68e-11)]_50 chrIV:1359294-1359797 2.86e-01 100 chrXII:11021-11544 5.26e-03 39_[+1(1.29e-06)]_42 chrXII:201786-202109 9.50e-01 100 chrXV:32-283 2.96e-02 79_[+1(1.67e-05)]_2 chrII:592910-593298 4.88e-01 100 chrIV:491661-491911 6.15e-01 100 chrVII:727631-728108 3.24e-01 100 chrXI:642706-643063 2.73e-01 100 chrXII:204539-204892 7.94e-01 100 chrXI:326855-327170 4.08e-02 100 chrXIII:431108-431552 9.63e-01 100 chrXV:24328-25048 4.39e-01 100 chrXII:92318-92846 6.40e-06 14_[-1(1.12e-07)]_67 chrIV:579029-580127 5.72e-01 100 chrV:303103-303389 9.55e-01 100 chrII:228676-229120 9.92e-01 100 chrX:440497-440597 5.96e-01 100 chrVII:882454-883184 7.55e-01 100 chrXIII:631889-632333 5.66e-01 100 chrV:135162-135714 3.71e-08 46_[+2(1.84e-10)]_33 chrXVI:214909-215453 3.03e-01 100 chrIV:1461518-1462112 1.01e-04 38_[+1(6.08e-08)]_43 chrXV:976172-976757 1.55e-07 13_[-1(3.96e-06)]_16_[-2(9.22e-08)]_\ 31 chrII:414018-414236 6.50e-01 100 chrVIII:410980-411694 4.29e-01 100 chrV:61003-62183 1.84e-01 100 chrIV:915596-916040 5.35e-02 100 chrIV:527169-527482 9.35e-01 100 chrVII:702198-702642 6.70e-01 100 chrXV:778945-779389 9.37e-01 100 chrXI:158202-158632 8.73e-01 100 chrX:415805-415905 2.11e-10 1_[+3(2.70e-14)]_70 chrVIII:556607-557237 9.61e-02 8_[-1(7.17e-05)]_[-1(6.67e-05)]_54 chrIV:601957-602245 9.99e-01 100 chrVIII:134084-134580 1.77e-10 37_[-1(2.55e-06)]_23_[-2(1.58e-10)] chrVII:311602-312215 3.10e-02 52_[+2(6.80e-05)]_27 chrXVI:810423-810922 2.01e-06 60_[-1(2.40e-09)]_21 chrV:367580-368024 7.63e-01 100 chrVIII:554253-554697 7.05e-01 100 chrII:405625-406197 2.48e-16 16_[-3(3.38e-14)]_12_[-2(1.59e-09)]_\ 22 chrIII:30539-30874 8.65e-01 100 chrX:121778-121878 1.99e-01 100 chrVII:804841-805285 9.77e-01 100 chrIV:1524609-1524906 8.55e-01 100 chrXII:951717-951856 7.19e-01 100 chrVIII:553453-553606 1.00e+00 100 chrVII:700478-701298 8.32e-01 100 chrXVI:16918-17279 1.57e-01 100 chrIV:355263-355708 9.94e-01 100 chrV:303706-304275 2.47e-01 100 chrX:421756-421856 6.29e-01 100 chrXII:36690-36979 8.17e-02 100 chrXVI:939538-939982 9.70e-01 100 chrVIII:562243-562635 4.19e-03 67_[-1(1.29e-06)]_14 chrVII:876188-876687 8.96e-12 13_[-1(1.01e-07)]_16_[-2(1.84e-10)]_\ 31 chrVII:479240-480170 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chrXII:737904-738348 8.28e-01 100 chrXII:949840-950366 9.98e-01 100 chrV:434355-434816 3.61e-03 15_[+2(1.32e-06)]_64 chrXV:505095-505493 4.07e-01 100 chrI:226780-226960 6.10e-01 100 chrV:435618-436055 4.42e-05 12_[+1(1.01e-07)]_69 chrVIII:386387-386661 1.82e-02 11_[-3(1.35e-05)]_60 chrV:441801-442631 7.39e-01 100 chrVII:110423-110917 3.61e-03 14_[+2(1.32e-06)]_65 chrIV:964443-964887 8.72e-01 100 chrXIII:30190-30543 5.71e-01 100 chrII:292353-292613 9.43e-01 100 chrII:83356-83800 1.31e-01 100 chrXV:92894-93457 6.06e-01 100 chrII:592232-592676 2.88e-01 100 chrIX:69447-69733 8.25e-01 100 chrIV:446581-446916 6.09e-01 100 chrIV:407951-408395 9.81e-01 100 chrVI:225106-225394 9.58e-02 100 chrXI:551770-552214 6.83e-01 100 chrVIII:385316-385624 3.53e-01 100 chrIV:976121-976460 1.87e-01 100 chrXV:729597-730041 4.75e-01 100 chrXI:556022-556466 9.97e-01 100 chrVII:661515-661939 1.66e-09 71_[-3(7.15e-14)] chrXIII:923379-923855 9.97e-01 100 chrXIV:631704-632117 9.28e-05 39_[+1(3.99e-07)]_42 chrIX:317947-318216 7.88e-01 100 chrIV:992546-993044 6.47e-01 100 chrXV:815662-816106 9.82e-01 100 chrVII:784755-785199 3.64e-01 100 chrV:363654-364050 6.70e-01 100 chrXIII:552043-552487 8.60e-01 100 chrVIII:115944-116388 1.92e-13 [+2(5.75e-10)]_16_[+1(4.00e-10)]_44 chrXVI:581867-582368 3.24e-11 1_[-1(1.01e-07)]_16_[-2(1.84e-10)]_\ 43 chrIII:163471-163875 9.24e-02 100 chrXII:5434-5942 5.76e-03 30_[+1(1.29e-06)]_13_[+1(5.15e-05)]_\ 19 chrXIV:771990-772294 3.32e-01 100 chrIV:1174549-1174993 3.61e-01 100 chrV:424853-425233 1.90e-01 100 chrVII:480688-481327 1.75e-02 100 chrIX:28-282 1.45e-01 100 chrXII:86741-87185 8.09e-01 100 chrII:235767-236004 5.77e-01 100 chrVIII:237676-238181 3.97e-04 35_[+1(3.09e-07)]_46 chrXIV:23971-24415 5.41e-02 100 chrXII:790336-790780 9.14e-01 100 chrIV:130556-130996 8.21e-02 100 chrXI:490751-491204 1.31e-06 47_[-1(2.24e-08)]_34 chrIX:138319-138963 2.14e-01 100 chrIV:1075297-1075735 2.05e-07 15_[+2(2.88e-09)]_64 chrXIII:420432-420905 6.56e-05 17_[+1(9.17e-08)]_64 chrXV:22210-22426 6.14e-01 100 chrXII:837711-838595 8.63e-02 63_[-2(7.51e-05)]_16 chrIV:509574-509997 1.99e-01 100 chrXIV:301498-302066 8.55e-01 100 chrXIII:259017-259482 7.00e-08 14_[+1(1.68e-11)]_67 chrIII:168113-168566 7.60e-11 21_[+2(1.58e-10)]_23_[+1(1.03e-06)]_\ 16 chrV:138436-139017 2.02e-05 30_[-2(1.59e-09)]_49 chrII:326597-327136 1.30e-04 23_[+1(1.83e-06)]_58 chrX:421961-422061 4.41e-01 100 chrXII:36832-37276 2.36e-01 100 chrX:349045-349145 7.11e-01 100 chrVII:919926-920216 7.16e-01 100 chrV:241968-242351 9.50e-02 100 chrXV:882696-882946 8.19e-02 100 chrXII:262760-263599 5.06e-01 100 chrIV:355995-356439 8.54e-01 100 chrVIII:462000-462232 3.17e-01 100 chrXV:1028588-1029166 8.68e-01 100 chrVII:782682-783126 4.60e-01 100 chrXIV:415411-416045 8.44e-01 100 chrXV:622705-622988 3.23e-01 100 chrXII:818426-818829 1.91e-06 72_[-2(2.21e-08)]_7 chrXIII:888657-889010 5.86e-01 100 chrXIII:195882-196415 6.40e-06 54_[+1(1.12e-07)]_27 chrXV:623284-623713 4.74e-01 100 chrVIII:382925-383381 1.85e-02 3_[-1(1.91e-05)]_78 chrXIII:348259-348656 9.93e-01 100 chrIX:183276-183707 5.65e-15 8_[+2(2.48e-11)]_17_[+1(3.39e-10)]_\ 35 chrVII:780492-780815 5.10e-02 100 chrX:424307-424407 6.35e-08 23_[+1(5.76e-10)]_58 chrXV:340126-340573 1.33e-10 9_[+2(3.77e-08)]_16_[+1(2.24e-08)]_\ 35 chrXII:448481-448968 3.82e-04 29_[+1(2.55e-06)]_52 chrXVI:785589-785934 2.89e-01 100 chrIV:488512-489084 3.63e-05 58_[+2(6.87e-09)]_21 chrX:440837-440937 9.92e-01 100 chrVII:1083644-1083869 7.07e-01 100 chrX:458482-458582 9.29e-03 15_[+1(9.50e-05)]_66 chrXVI:280040-280230 1.22e-01 100 chrXIV:499326-499660 9.94e-01 100 chrVII:787080-787306 9.90e-01 100 chrV:56218-56492 9.58e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************