******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ARR1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrXI:618813-619236 1.0000 100 chrXI:326159-326766 1.0000 100 chrXII:263884-264063 1.0000 100 chrIV:884161-884617 1.0000 100 chrXVI:303989-304306 1.0000 100 chrXII:5443-5938 1.0000 100 chrVII:736143-736683 1.0000 100 chrIV:1354791-1355231 1.0000 100 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1.0000 100 chrIV:520739-521199 1.0000 100 chrX:451794-451894 1.0000 100 chrXIV:415532-415906 1.0000 100 chrVII:883376-883740 1.0000 100 chrX:422675-422775 1.0000 100 chrXVI:377981-378352 1.0000 100 chrXIII:294902-295342 1.0000 100 chrXIII:923395-923845 1.0000 100 chrXIII:747726-748193 1.0000 100 chrVII:783850-784290 1.0000 100 chrXIII:123611-124051 1.0000 100 chrXII:796941-797395 1.0000 100 chrIV:1525299-1525679 1.0000 100 chrXIV:63108-63585 1.0000 100 chrIV:42-355 1.0000 100 chrX:424304-424404 1.0000 100 chrXII:592365-592888 1.0000 100 chrXI:330554-330994 1.0000 100 chrX:204489-204589 1.0000 100 chrV:269294-269456 1.0000 100 chrXII:242491-242706 1.0000 100 chrVII:366075-366708 1.0000 100 chrIV:644999-645422 1.0000 100 chrXII:448498-448944 1.0000 100 chrXI:218431-218543 1.0000 100 chrV:354689-355303 1.0000 100 chrIV:1443392-1443832 1.0000 100 chrI:73243-73571 1.0000 100 chrVII:110424-110913 1.0000 100 chrV:207141-207622 1.0000 100 chrXII:845534-845974 1.0000 100 chrXV:416015-416455 1.0000 100 chrXVI:303989-304312 1.0000 100 chrX:609393-609493 1.0000 100 chrVIII:34455-34880 1.0000 100 chrX:374211-374311 1.0000 100 chrXI:313247-313685 1.0000 100 chrII:266181-266685 1.0000 100 chrXII:80606-81046 1.0000 100 chrV:61028-62171 1.0000 100 chrXV:167973-168446 1.0000 100 chrVII:482554-483027 1.0000 100 chrXV:412714-413154 1.0000 100 chrXVI:277831-278271 1.0000 100 chrVIII:386471-386869 1.0000 100 chrIII:292596-293005 1.0000 100 chrVII:561416-561958 1.0000 100 chrXV:623279-623598 1.0000 100 chrIV:434002-434584 1.0000 100 chrXIV:725974-726417 1.0000 100 chrXV:709970-710407 1.0000 100 chrXII:951476-951916 1.0000 100 chrVII:609478-609768 1.0000 100 chrII:392934-393374 1.0000 100 chrIV:221964-222336 1.0000 100 chrII:59552-59992 1.0000 100 chrXVI:282282-282494 1.0000 100 chrIII:293895-294064 1.0000 100 chrIV:652652-653092 1.0000 100 chrIII:163468-163876 1.0000 100 chrXV:505105-505503 1.0000 100 chrII:9355-9828 1.0000 100 chrXV:254657-254935 1.0000 100 chrIV:556082-556522 1.0000 100 chrVII:405278-405751 1.0000 100 chrX:153379-153479 1.0000 100 chrXII:898761-898946 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ARR1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ARR1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ARR1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 586 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 58600 N= 586 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.323 C 0.177 G 0.177 T 0.323 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ARR1/background): A 0.326 C 0.174 G 0.174 T 0.326 ******************************************************************************** ******************************************************************************** MOTIF WGSBYNYDTGGCSBAGTGGKTWRRGS MEME-1 width = 26 sites = 93 llr = 1585 E-value = 2.3e-299 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGSBYNYDTGGCSBAGTGGKTWRRGS MEME-1 Description -------------------------------------------------------------------------------- Simplified A 4:111212:2:::1a1::::36551: pos.-specific C 2:43434::::753:::2::1:1215 probability G 1a531323:8a:32:9:6a4:13364 matrix T 4::43234a::324::a2:5641111 bits 2.5 * * 2.3 * * * 2.0 * * * * 1.8 * * * * Relative 1.5 * *** *** * Entropy 1.3 * **** *** * (24.6 bits) 1.0 ** **** *** * 0.8 ** ***** ****** ** 0.5 ** ***** ****** * ** 0.3 ************************* 0.0 -------------------------- Multilevel AGGTCCCTTGGCCTAGTGGTTAAAGC consensus T CCTGTG A TGC T GATGG G sequence G T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBYNYDTGGCSBAGTGGKTWRRGS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------------- chrXI:219689-220128 + 36 2.37e-12 AACAGTAAAT AGGGCGTGTGGCGTAGTCGGTAGCGC GCTCCCTTAG chrIV:410180-410582 + 47 3.62e-12 ATACAAATAT TGGGCGTGTGGCGTAGTCGGTAGCGC GCTCCCTTAG chrVII:774124-774618 + 27 3.62e-12 ATCAATTAAT TGGGCGTGTGGCGTAGTCGGTAGCGC GCTCCCTTAG chrV:551133-551550 - 43 4.45e-12 CACAGATTAC AGGTCTCTTGGCCCAGTTGGTTAAGG CACCGTGCTA chrXVI:856703-857116 + 42 5.44e-12 CAACAAGATT CGGGCGTGTGGCGTAGTCGGTAGCGC GCTCCCTTAG chrXII:734623-735058 + 11 6.63e-12 CAACAAAGTT TGGTCTCTTGGCCCAGTTGGTTAAGG CACCGTGCTA chrXVI:819286-819786 + 42 6.63e-12 AACAATAGAA TGGTCTCTTGGCCCAGTTGGTTAAGG CACCGTGCTA chrV:443047-443519 - 18 6.63e-12 CATTAAAATT TGGTCTCTTGGCCCAGTTGGTTAAGG CACCGTGCTA chrIX:210472-210947 + 5 6.63e-12 TATC TGGTCTCTTGGCCCAGTTGGTTAAGG CACCGTGCTA chrIV:667816-668282 - 57 6.63e-12 CGATCCAAAT TGGTCTCTTGGCCCAGTTGGTTAAGG CACCGTGCTA chrXVI:880087-880563 - 70 6.63e-12 TATAA TGGTCTCTTGGCCCAGTTGGTTAAGG CACCGTGCTA chrXII:1051877-1052346 - 59 6.63e-12 GTCCTTTTCA TGGTCTCTTGGCCCAGTTGGTTAAGG CACCGTGCTA chrIV:980820-981274 - 34 1.70e-11 TTGTAAATTG AGGCAACTTGGCCGAGTGGTTAAGGC GAAAGATTAG chrX:523798-523898 - 66 1.70e-11 AGAGATTAA AGGCAACTTGGCCGAGTGGTTAAGGC GAAAGATTAG chrIV:1305432-1305888 + 19 1.70e-11 ATACAAATTA AGGCAACTTGGCCGAGTGGTTAAGGC GAAAGATTAG chrIV:437516-438012 + 57 1.70e-11 ATCATTAGTA AGGCAACTTGGCCGAGTGGTTAAGGC GAAAGATTAG chrXIII:259011-259482 - 19 2.43e-11 CAAGTTAGTA TGGCAACTTGGCCGAGTGGTTAAGGC GAAAGATTAG chrXII:592365-592888 - 19 2.89e-11 CAACATACAA TGGGAGTTTGGCCGAGTGGTTTAAGG CGTCAGATTT chrXV:853987-854450 - 67 2.89e-11 CAGTCATC AGGGCACATGGCGCAGTTGGTAGCGC GCTTCCCTTG chrX:617706-617806 + 40 2.89e-11 CAACAAACAA TGGGAGTTTGGCCGAGTGGTTTAAGG CGTCAGATTT chrIV:884161-884617 + 21 1.45e-10 CTTTCGAAAA TGCTCGTGTAGCTCAGTGGTTAGAGC TTCGTGCTTA chrXVI:689329-689841 + 29 1.95e-10 AGATTATTTT GGGCACTATGGCCGAGTGGTTAAGGC GACAGACTTG chrIV:434002-434584 - 69 3.00e-10 ATCAGA AGCTTCTATGGCCAAGTTGGTAAGGC GCCACACTAG chrXV:113570-114045 + 44 3.00e-10 TCAGAGATTT AGCTTCTATGGCCAAGTTGGTAAGGC GCCACACTAG chrVIII:115955-116390 - 33 3.00e-10 TCACTATTAG AGCTTCTATGGCCAAGTTGGTAAGGC GCCACACTAG chrX:58943-59043 - 41 3.00e-10 ATAAAATAGA AGCTTCTATGGCCAAGTTGGTAAGGC GCCACACTAG chrIII:295272-295761 + 17 3.00e-10 CATACAATTA AGCTTCTATGGCCAAGTTGGTAAGGC GCCACACTAG chrIV:1150649-1151156 - 65 3.45e-10 AAAGTGTTTC AGTCCCAGTGGCCGAGTGGTTAAGGC GATGCCTGCT chrX:378154-378254 + 37 8.81e-10 ATAAATTAAT AGGTTTCGTGGTCTAGTCGGTTATGG CATCTGCTTA chrII:9355-9828 + 41 1.14e-09 AGAAAATTCG TGGAGGGTTGGCCGAGTGGTCTAAGG CGGCAGACTT chrXIV:725974-726417 - 48 1.14e-09 TATAAATCTT TGGAGGGTTGGCCGAGTGGTCTAAGG CGGCAGACTT chrX:424304-424404 - 27 1.14e-09 TTAAATAAGA TGGAGGGTTGGCCGAGTGGTCTAAGG CGGCAGACTT chrVII:823245-823711 + 53 1.14e-09 CCAATAAGAG TGGTTTCGTGGTCTAGTCGGTTATGG CATCTGCTTA chrVIII:85171-85576 - 24 1.14e-09 AATAAGAATT TGGTTTCGTGGTCTAGTCGGTTATGG CATCTGCTTA chrXI:307996-308408 - 41 1.14e-09 AACAATTAAG TGGTTTCGTGGTCTAGTCGGTTATGG CATCTGCTTA chrXIII:372298-372749 - 21 1.14e-09 CAATAAAACC TGGTTTCGTGGTCTAGTCGGTTATGG CATCTGCTTA chrII:347397-347865 + 21 1.46e-09 TTCATTTATA CGGAGGGTTGGCCGAGTGGTCTAAGG CGGCAGACTT chrXII:962832-963305 - 13 1.46e-09 GTATTATCGA CGGAGGGTTGGCCGAGTGGTCTAAGG CGGCAGACTT chrIV:519543-519997 + 22 1.46e-09 AGTGATTTTA CGGAGGGTTGGCCGAGTGGTCTAAGG CGGCAGACTT chrXIV:560471-560997 - 57 1.86e-09 CGTAATAACG GGCTTCTATGGCCAAGTTGGTAAGGC GCCACACTAG chrIV:1201520-1202018 + 30 3.34e-09 ACAAATAAAT AGCCTTGTTGGCGCAATCGGTAGCGC GTATGACTCT chrV:435624-436057 - 10 3.34e-09 CAACAATAAG AGCCTTGTTGGCGCAATCGGTAGCGC GTATGACTC chrX:414779-414879 + 4 3.34e-09 ATT AGCCTTGTTGGCGCAATCGGTAGCGC GTATGACTCT chrVII:876172-876700 + 7 3.34e-09 TAGAAT AGCCTTGTTGGCGCAATCGGTAGCGC GTATGACTCT chrIV:1352315-1352755 - 29 3.34e-09 CCAACGAAAT AGCCTTGTTGGCGCAATCGGTAGCGC GTATGACTCT chrXII:628163-628688 + 7 4.19e-09 AATAAG TGGTTGTTTGGCCGAGCGGTCTAAGG CGCCTGATTC chrXIV:102520-102977 + 17 4.19e-09 ATATATTATA AGACTCCATGGCCAAGTTGGTTAAGG CGTGCGACTG chrXII:975837-976256 - 36 4.19e-09 CGGAAATAAA AGACTCCATGGCCAAGTTGGTTAAGG CGTGCGACTG chrIV:1461555-1462082 - 37 4.19e-09 AACAAATAAG TGGTTGTTTGGCCGAGCGGTCTAAGG CGCCTGATTC chrXV:228111-228583 + 33 4.19e-09 ATAAAATATT AGACTCCATGGCCAAGTTGGTTAAGG CGTGCGACTG chrXV:464213-464702 + 42 4.68e-09 CAAGTTAACA AGGGCGTGTGGTCTAGTGGTATGATT CTCGCTTTGG chrXII:92329-92836 + 15 4.68e-09 CAAGTTAATA AGGGCGTGTGGTCTAGTGGTATGATT CTCGCTTTGG chrXIII:195885-196422 - 43 4.68e-09 CAAGTTCACA AGGGCGTGTGGTCTAGTGGTATGATT CTCGCTTTGG chrVI:137265-137768 - 69 5.23e-09 AGTGAC TGACTCCATGGCCAAGTTGGTTAAGG CGTGCGACTG chrIII:127537-127909 + 42 5.23e-09 CAAGATAAAA TGACTCCATGGCCAAGTTGGTTAAGG CGTGCGACTG chrVIII:388730-389211 - 51 5.83e-09 AACAGATACA TGGGCGTGTGGTCTAGTGGTATGATT CTCGCTTTGG chrVI:101163-101676 + 6 7.23e-09 TAATT CGGGCGTGTGGTCTAGTGGTATGATT CTCGCTTTGG chrXVI:744082-744556 + 14 1.99e-08 ACAGTGTAAA AGCCTCCTTAGCTTAGTGGTAGAGCG TTGCACTTGT chrVIII:466760-467244 + 37 1.99e-08 TTGTATTTTT AGCCTCCTTAGCTTAGTGGTAGAGCG TTGCACTTGT chrIII:142564-142984 - 23 2.65e-08 CAAGATTACT AGCGCAAGTGGTTTAGTGGTAAAATC CAACGTTGCC chrXVI:860155-860604 + 49 2.65e-08 GTAAATAACA AGCGCAAGTGGTTTAGTGGTAAAATC CAACGTTGCC chrIV:992589-993055 + 59 2.65e-08 AACAATTGTG AGCGCAAGTGGTTTAGTGGTAAAATC CAACGTTGCC chrVII:930755-931264 - 40 2.65e-08 ATAATCAGTA AGCGCAAGTGGTTTAGTGGTAAAATC CAACGTTGCC chrXVI:572015-572542 + 40 3.84e-08 CACAATACTT CGCGCAAGTGGTTTAGTGGTAAAATC CAACGTTGCC chrXIII:183734-184158 - 48 3.84e-08 CAATAAAGAT CGCGCAAGTGGTTTAGTGGTAAAATC CAACGTTGCC chrVII:405278-405751 + 5 4.59e-08 CAGT AGCTCGCGTGGCGTAATGGCAACGCG TCTGACTTCT chrXIII:747726-748193 - 30 4.59e-08 ACATATGACT AGCTCGCGTGGCGTAATGGCAACGCG TCTGACTTCT chrXII:448498-448944 - 26 5.48e-08 CAAGAAGTTC CGGTCCTATAGTGTAGTGGTTATCAC TTTCGGTTTT chrIV:644999-645422 - 40 5.48e-08 ACAGTTGTTA CGGTCCTATAGTGTAGTGGTTATCAC TTTCGGTTTT chrIV:802554-803020 - 41 5.48e-08 CATGAATTGT CGGTCCTATAGTGTAGTGGTTATCAC TTTCGGTTTT chrXIII:572672-573180 - 55 5.48e-08 CATAACAGAC AGCTTCAGTAGCTCAGTAGGAAGAGC GTCAGTCTCA chrX:422675-422775 + 24 6.51e-08 ATCCTTTGTA TGCTTCAGTAGCTCAGTAGGAAGAGC GTCAGTCTCA chrVIII:358297-358808 - 43 6.51e-08 ACAAATAGTA AGCGGATTTAGCTCAGTTGGGAGAGC GCCAGACTGA chrX:390889-390989 - 42 6.51e-08 CAAGAAATAG TGCTTCAGTAGCTCAGTAGGAAGAGC GTCAGTCTCA chrVI:157724-158203 - 70 6.51e-08 ATAGA AGCGGATTTAGCTCAGTTGGGAGAGC GCCAGACTGA chrVIII:237680-238157 - 47 6.51e-08 ACAAATAGTA AGCGGATTTAGCTCAGTTGGGAGAGC GCCAGACTGA chrXVI:435675-436193 - 56 7.72e-08 ATACAACAAA AGCTCGTATGGCGCAGTGGTAGCGCA GCAGATTGCA chrVII:706924-707382 - 52 7.72e-08 CAGAAAATCA AGCTCGTATGGCGCAGTGGTAGCGCA GCAGATTGCA chrIV:520739-521199 + 52 1.26e-07 GTCCATTTTA GGGTCCTATAGTGTAGTGGTTATCAC TTTCGGTTTT chrXIV:96044-96503 - 65 1.37e-07 ATCCAACACA TGGGCGGTTAGTGTAGTGGTTATCAT CCCACCCTTC chrVII:779368-779870 + 46 1.60e-07 AAGTTAACCC CGGGCGGTTAGTGTAGTGGTTATCAT CCCACCCTTC chrXV:110793-111248 - 39 1.60e-07 ACAATTAACC CGGGCGGTTAGTGTAGTGGTTATCAT CCCACCCTTC chrII:326605-327080 - 49 1.73e-07 ATCGAGTTCC GGGTCCAATGGTCCAGTGGTTCAAGA CGTCGCCTTT chrVII:319583-320060 + 9 4.50e-07 AAGAAATT AGCCATCTTAGTATAGTGGTTAGTAC ACATCGTTGT chrV:99919-100436 + 5 4.50e-07 GGCT AAGCGCCGTGGCGCAGTGGAAGCGCG CAGGGCTCAT chrXI:313247-313685 - 32 5.16e-07 CACAGTTGTT TGCCATCTTAGTATAGTGGTTAGTAC ACATCGTTGT chrVII:110424-110913 - 54 5.16e-07 AATAATTACC TGCCATCTTAGTATAGTGGTTAGTAC ACATCGTTGT chrXIII:362864-363312 + 25 5.16e-07 AATCCAAGTT TGCCATCTTAGTATAGTGGTTAGTAC ACATCGTTGT chrXV:709970-710407 + 62 5.91e-07 CAAGAATTAG CAGCGCCGTGGCGCAGTGGAAGCGCG CAGGGCTCAT chrXVI:338716-339109 - 33 5.91e-07 CATGATTTAG CAGCGCCGTGGCGCAGTGGAAGCGCG CAGGGCTCAT chrX:538335-538435 + 48 6.32e-07 CAACCAAGTT GGTTCCGTTGGCGTAATGGTAACGCG TCTCCCTCCT chrXII:818423-818820 + 37 1.83e-06 TAATTTATTA TGCTCCTCTAGTGCAATGGTTAGCAT GCATTCTTCC chrXII:491401-491841 - 35 5.97e-06 TTCCTAAAAC TGCACTTATAGTGGGGTGTGAAAGGG CCCTTCCCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBYNYDTGGCSBAGTGGKTWRRGS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXI:219689-220128 2.4e-12 35_[+1]_39 chrIV:410180-410582 3.6e-12 46_[+1]_28 chrVII:774124-774618 3.6e-12 26_[+1]_48 chrV:551133-551550 4.4e-12 42_[-1]_32 chrXVI:856703-857116 5.4e-12 41_[+1]_33 chrXII:734623-735058 6.6e-12 10_[+1]_64 chrXVI:819286-819786 6.6e-12 41_[+1]_33 chrV:443047-443519 6.6e-12 17_[-1]_57 chrIX:210472-210947 6.6e-12 4_[+1]_70 chrIV:667816-668282 6.6e-12 56_[-1]_18 chrXVI:880087-880563 6.6e-12 69_[-1]_5 chrXII:1051877-1052346 6.6e-12 58_[-1]_16 chrIV:980820-981274 1.7e-11 33_[-1]_41 chrX:523798-523898 1.7e-11 65_[-1]_9 chrIV:1305432-1305888 1.7e-11 18_[+1]_56 chrIV:437516-438012 1.7e-11 56_[+1]_18 chrXIII:259011-259482 2.4e-11 18_[-1]_56 chrXII:592365-592888 2.9e-11 18_[-1]_56 chrXV:853987-854450 2.9e-11 66_[-1]_8 chrX:617706-617806 2.9e-11 39_[+1]_35 chrIV:884161-884617 1.4e-10 20_[+1]_54 chrXVI:689329-689841 1.9e-10 28_[+1]_46 chrIV:434002-434584 3e-10 68_[-1]_6 chrXV:113570-114045 3e-10 43_[+1]_31 chrVIII:115955-116390 3e-10 32_[-1]_42 chrX:58943-59043 3e-10 40_[-1]_34 chrIII:295272-295761 3e-10 16_[+1]_58 chrIV:1150649-1151156 3.4e-10 64_[-1]_10 chrX:378154-378254 8.8e-10 36_[+1]_38 chrII:9355-9828 1.1e-09 40_[+1]_34 chrXIV:725974-726417 1.1e-09 47_[-1]_27 chrX:424304-424404 1.1e-09 26_[-1]_48 chrVII:823245-823711 1.1e-09 52_[+1]_22 chrVIII:85171-85576 1.1e-09 23_[-1]_51 chrXI:307996-308408 1.1e-09 40_[-1]_34 chrXIII:372298-372749 1.1e-09 20_[-1]_54 chrII:347397-347865 1.5e-09 20_[+1]_54 chrXII:962832-963305 1.5e-09 12_[-1]_62 chrIV:519543-519997 1.5e-09 21_[+1]_53 chrXIV:560471-560997 1.9e-09 56_[-1]_18 chrIV:1201520-1202018 3.3e-09 29_[+1]_45 chrV:435624-436057 3.3e-09 9_[-1]_65 chrX:414779-414879 3.3e-09 3_[+1]_71 chrVII:876172-876700 3.3e-09 6_[+1]_68 chrIV:1352315-1352755 3.3e-09 28_[-1]_46 chrXII:628163-628688 4.2e-09 6_[+1]_68 chrXIV:102520-102977 4.2e-09 16_[+1]_58 chrXII:975837-976256 4.2e-09 35_[-1]_39 chrIV:1461555-1462082 4.2e-09 36_[-1]_38 chrXV:228111-228583 4.2e-09 32_[+1]_42 chrXV:464213-464702 4.7e-09 41_[+1]_33 chrXII:92329-92836 4.7e-09 14_[+1]_60 chrXIII:195885-196422 4.7e-09 42_[-1]_32 chrVI:137265-137768 5.2e-09 68_[-1]_6 chrIII:127537-127909 5.2e-09 41_[+1]_33 chrVIII:388730-389211 5.8e-09 50_[-1]_24 chrVI:101163-101676 7.2e-09 5_[+1]_69 chrXVI:744082-744556 2e-08 13_[+1]_61 chrVIII:466760-467244 2e-08 36_[+1]_38 chrIII:142564-142984 2.7e-08 22_[-1]_52 chrXVI:860155-860604 2.7e-08 48_[+1]_26 chrIV:992589-993055 2.7e-08 58_[+1]_16 chrVII:930755-931264 2.7e-08 39_[-1]_35 chrXVI:572015-572542 3.8e-08 39_[+1]_35 chrXIII:183734-184158 3.8e-08 47_[-1]_27 chrVII:405278-405751 4.6e-08 4_[+1]_70 chrXIII:747726-748193 4.6e-08 29_[-1]_45 chrXII:448498-448944 5.5e-08 25_[-1]_49 chrIV:644999-645422 5.5e-08 39_[-1]_35 chrIV:802554-803020 5.5e-08 40_[-1]_34 chrXIII:572672-573180 5.5e-08 54_[-1]_20 chrX:422675-422775 6.5e-08 23_[+1]_51 chrVIII:358297-358808 6.5e-08 42_[-1]_32 chrX:390889-390989 6.5e-08 41_[-1]_33 chrVI:157724-158203 6.5e-08 69_[-1]_5 chrVIII:237680-238157 6.5e-08 46_[-1]_28 chrXVI:435675-436193 7.7e-08 55_[-1]_19 chrVII:706924-707382 7.7e-08 51_[-1]_23 chrIV:520739-521199 1.3e-07 51_[+1]_23 chrXIV:96044-96503 1.4e-07 64_[-1]_10 chrVII:779368-779870 1.6e-07 45_[+1]_29 chrXV:110793-111248 1.6e-07 38_[-1]_36 chrII:326605-327080 1.7e-07 48_[-1]_26 chrVII:319583-320060 4.5e-07 8_[+1]_66 chrV:99919-100436 4.5e-07 4_[+1]_70 chrXI:313247-313685 5.2e-07 31_[-1]_43 chrVII:110424-110913 5.2e-07 53_[-1]_21 chrXIII:362864-363312 5.2e-07 24_[+1]_50 chrXV:709970-710407 5.9e-07 61_[+1]_13 chrXVI:338716-339109 5.9e-07 32_[-1]_42 chrX:538335-538435 6.3e-07 47_[+1]_27 chrXII:818423-818820 1.8e-06 36_[+1]_38 chrXII:491401-491841 6e-06 34_[-1]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBYNYDTGGCSBAGTGGKTWRRGS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGSBYNYDTGGCSBAGTGGKTWRRGS width=26 seqs=93 chrXI:219689-220128 ( 36) AGGGCGTGTGGCGTAGTCGGTAGCGC 1 chrIV:410180-410582 ( 47) TGGGCGTGTGGCGTAGTCGGTAGCGC 1 chrVII:774124-774618 ( 27) TGGGCGTGTGGCGTAGTCGGTAGCGC 1 chrV:551133-551550 ( 43) AGGTCTCTTGGCCCAGTTGGTTAAGG 1 chrXVI:856703-857116 ( 42) CGGGCGTGTGGCGTAGTCGGTAGCGC 1 chrXII:734623-735058 ( 11) TGGTCTCTTGGCCCAGTTGGTTAAGG 1 chrXVI:819286-819786 ( 42) TGGTCTCTTGGCCCAGTTGGTTAAGG 1 chrV:443047-443519 ( 18) TGGTCTCTTGGCCCAGTTGGTTAAGG 1 chrIX:210472-210947 ( 5) TGGTCTCTTGGCCCAGTTGGTTAAGG 1 chrIV:667816-668282 ( 57) TGGTCTCTTGGCCCAGTTGGTTAAGG 1 chrXVI:880087-880563 ( 70) TGGTCTCTTGGCCCAGTTGGTTAAGG 1 chrXII:1051877-1052346 ( 59) TGGTCTCTTGGCCCAGTTGGTTAAGG 1 chrIV:980820-981274 ( 34) AGGCAACTTGGCCGAGTGGTTAAGGC 1 chrX:523798-523898 ( 66) AGGCAACTTGGCCGAGTGGTTAAGGC 1 chrIV:1305432-1305888 ( 19) AGGCAACTTGGCCGAGTGGTTAAGGC 1 chrIV:437516-438012 ( 57) AGGCAACTTGGCCGAGTGGTTAAGGC 1 chrXIII:259011-259482 ( 19) TGGCAACTTGGCCGAGTGGTTAAGGC 1 chrXII:592365-592888 ( 19) TGGGAGTTTGGCCGAGTGGTTTAAGG 1 chrXV:853987-854450 ( 67) AGGGCACATGGCGCAGTTGGTAGCGC 1 chrX:617706-617806 ( 40) TGGGAGTTTGGCCGAGTGGTTTAAGG 1 chrIV:884161-884617 ( 21) TGCTCGTGTAGCTCAGTGGTTAGAGC 1 chrXVI:689329-689841 ( 29) GGGCACTATGGCCGAGTGGTTAAGGC 1 chrIV:434002-434584 ( 69) AGCTTCTATGGCCAAGTTGGTAAGGC 1 chrXV:113570-114045 ( 44) AGCTTCTATGGCCAAGTTGGTAAGGC 1 chrVIII:115955-116390 ( 33) AGCTTCTATGGCCAAGTTGGTAAGGC 1 chrX:58943-59043 ( 41) AGCTTCTATGGCCAAGTTGGTAAGGC 1 chrIII:295272-295761 ( 17) AGCTTCTATGGCCAAGTTGGTAAGGC 1 chrIV:1150649-1151156 ( 65) AGTCCCAGTGGCCGAGTGGTTAAGGC 1 chrX:378154-378254 ( 37) AGGTTTCGTGGTCTAGTCGGTTATGG 1 chrII:9355-9828 ( 41) TGGAGGGTTGGCCGAGTGGTCTAAGG 1 chrXIV:725974-726417 ( 48) TGGAGGGTTGGCCGAGTGGTCTAAGG 1 chrX:424304-424404 ( 27) TGGAGGGTTGGCCGAGTGGTCTAAGG 1 chrVII:823245-823711 ( 53) TGGTTTCGTGGTCTAGTCGGTTATGG 1 chrVIII:85171-85576 ( 24) TGGTTTCGTGGTCTAGTCGGTTATGG 1 chrXI:307996-308408 ( 41) TGGTTTCGTGGTCTAGTCGGTTATGG 1 chrXIII:372298-372749 ( 21) TGGTTTCGTGGTCTAGTCGGTTATGG 1 chrII:347397-347865 ( 21) CGGAGGGTTGGCCGAGTGGTCTAAGG 1 chrXII:962832-963305 ( 13) CGGAGGGTTGGCCGAGTGGTCTAAGG 1 chrIV:519543-519997 ( 22) CGGAGGGTTGGCCGAGTGGTCTAAGG 1 chrXIV:560471-560997 ( 57) GGCTTCTATGGCCAAGTTGGTAAGGC 1 chrIV:1201520-1202018 ( 30) AGCCTTGTTGGCGCAATCGGTAGCGC 1 chrV:435624-436057 ( 10) AGCCTTGTTGGCGCAATCGGTAGCGC 1 chrX:414779-414879 ( 4) AGCCTTGTTGGCGCAATCGGTAGCGC 1 chrVII:876172-876700 ( 7) AGCCTTGTTGGCGCAATCGGTAGCGC 1 chrIV:1352315-1352755 ( 29) AGCCTTGTTGGCGCAATCGGTAGCGC 1 chrXII:628163-628688 ( 7) TGGTTGTTTGGCCGAGCGGTCTAAGG 1 chrXIV:102520-102977 ( 17) AGACTCCATGGCCAAGTTGGTTAAGG 1 chrXII:975837-976256 ( 36) AGACTCCATGGCCAAGTTGGTTAAGG 1 chrIV:1461555-1462082 ( 37) TGGTTGTTTGGCCGAGCGGTCTAAGG 1 chrXV:228111-228583 ( 33) AGACTCCATGGCCAAGTTGGTTAAGG 1 chrXV:464213-464702 ( 42) AGGGCGTGTGGTCTAGTGGTATGATT 1 chrXII:92329-92836 ( 15) AGGGCGTGTGGTCTAGTGGTATGATT 1 chrXIII:195885-196422 ( 43) AGGGCGTGTGGTCTAGTGGTATGATT 1 chrVI:137265-137768 ( 69) TGACTCCATGGCCAAGTTGGTTAAGG 1 chrIII:127537-127909 ( 42) TGACTCCATGGCCAAGTTGGTTAAGG 1 chrVIII:388730-389211 ( 51) TGGGCGTGTGGTCTAGTGGTATGATT 1 chrVI:101163-101676 ( 6) CGGGCGTGTGGTCTAGTGGTATGATT 1 chrXVI:744082-744556 ( 14) AGCCTCCTTAGCTTAGTGGTAGAGCG 1 chrVIII:466760-467244 ( 37) AGCCTCCTTAGCTTAGTGGTAGAGCG 1 chrIII:142564-142984 ( 23) AGCGCAAGTGGTTTAGTGGTAAAATC 1 chrXVI:860155-860604 ( 49) AGCGCAAGTGGTTTAGTGGTAAAATC 1 chrIV:992589-993055 ( 59) AGCGCAAGTGGTTTAGTGGTAAAATC 1 chrVII:930755-931264 ( 40) AGCGCAAGTGGTTTAGTGGTAAAATC 1 chrXVI:572015-572542 ( 40) CGCGCAAGTGGTTTAGTGGTAAAATC 1 chrXIII:183734-184158 ( 48) CGCGCAAGTGGTTTAGTGGTAAAATC 1 chrVII:405278-405751 ( 5) AGCTCGCGTGGCGTAATGGCAACGCG 1 chrXIII:747726-748193 ( 30) AGCTCGCGTGGCGTAATGGCAACGCG 1 chrXII:448498-448944 ( 26) CGGTCCTATAGTGTAGTGGTTATCAC 1 chrIV:644999-645422 ( 40) CGGTCCTATAGTGTAGTGGTTATCAC 1 chrIV:802554-803020 ( 41) CGGTCCTATAGTGTAGTGGTTATCAC 1 chrXIII:572672-573180 ( 55) AGCTTCAGTAGCTCAGTAGGAAGAGC 1 chrX:422675-422775 ( 24) TGCTTCAGTAGCTCAGTAGGAAGAGC 1 chrVIII:358297-358808 ( 43) AGCGGATTTAGCTCAGTTGGGAGAGC 1 chrX:390889-390989 ( 42) TGCTTCAGTAGCTCAGTAGGAAGAGC 1 chrVI:157724-158203 ( 70) AGCGGATTTAGCTCAGTTGGGAGAGC 1 chrVIII:237680-238157 ( 47) AGCGGATTTAGCTCAGTTGGGAGAGC 1 chrXVI:435675-436193 ( 56) AGCTCGTATGGCGCAGTGGTAGCGCA 1 chrVII:706924-707382 ( 52) AGCTCGTATGGCGCAGTGGTAGCGCA 1 chrIV:520739-521199 ( 52) GGGTCCTATAGTGTAGTGGTTATCAC 1 chrXIV:96044-96503 ( 65) TGGGCGGTTAGTGTAGTGGTTATCAT 1 chrVII:779368-779870 ( 46) CGGGCGGTTAGTGTAGTGGTTATCAT 1 chrXV:110793-111248 ( 39) CGGGCGGTTAGTGTAGTGGTTATCAT 1 chrII:326605-327080 ( 49) GGGTCCAATGGTCCAGTGGTTCAAGA 1 chrVII:319583-320060 ( 9) AGCCATCTTAGTATAGTGGTTAGTAC 1 chrV:99919-100436 ( 5) AAGCGCCGTGGCGCAGTGGAAGCGCG 1 chrXI:313247-313685 ( 32) TGCCATCTTAGTATAGTGGTTAGTAC 1 chrVII:110424-110913 ( 54) TGCCATCTTAGTATAGTGGTTAGTAC 1 chrXIII:362864-363312 ( 25) TGCCATCTTAGTATAGTGGTTAGTAC 1 chrXV:709970-710407 ( 62) CAGCGCCGTGGCGCAGTGGAAGCGCG 1 chrXVI:338716-339109 ( 33) CAGCGCCGTGGCGCAGTGGAAGCGCG 1 chrX:538335-538435 ( 48) GGTTCCGTTGGCGTAATGGTAACGCG 1 chrXII:818423-818820 ( 37) TGCTCCTCTAGTGCAATGGTTAGCAT 1 chrXII:491401-491841 ( 35) TGCACTTATAGTGGGGTGTGAAAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBYNYDTGGCSBAGTGGKTWRRGS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 26 n= 43950 bayes= 6.66731 E= 2.3e-299 44 -21 -169 12 -334 -1318 248 -1318 -260 115 163 -392 -211 68 57 25 -134 134 -43 -11 -102 79 74 -40 -146 111 -11 8 -53 -401 89 44 -1318 -1318 -1318 162 -46 -1318 213 -1318 -1318 -1318 252 -1318 -1318 196 -1318 -2 -292 154 74 -102 -146 79 15 25 160 -1318 -401 -1318 -175 -1318 238 -1318 -1318 -302 -1318 159 -334 -21 171 -40 -1318 -1318 251 -492 -334 -302 134 63 -28 -102 -243 91 78 -401 -121 12 75 -102 74 -211 47 15 57 -175 -134 -69 189 -146 -334 144 119 -175 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBYNYDTGGCSBAGTGGKTWRRGS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 26 nsites= 93 E= 2.3e-299 0.440860 0.150538 0.053763 0.354839 0.032258 0.000000 0.967742 0.000000 0.053763 0.387097 0.537634 0.021505 0.075269 0.279570 0.258065 0.387097 0.129032 0.440860 0.129032 0.301075 0.161290 0.301075 0.290323 0.247312 0.118280 0.376344 0.161290 0.344086 0.225806 0.010753 0.322581 0.440860 0.000000 0.000000 0.000000 1.000000 0.236559 0.000000 0.763441 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.677419 0.000000 0.322581 0.043011 0.505376 0.290323 0.161290 0.118280 0.301075 0.193548 0.387097 0.989247 0.000000 0.010753 0.000000 0.096774 0.000000 0.903226 0.000000 0.000000 0.021505 0.000000 0.978495 0.032258 0.150538 0.569892 0.247312 0.000000 0.000000 0.989247 0.010753 0.032258 0.021505 0.440860 0.505376 0.268817 0.086022 0.032258 0.612903 0.559140 0.010753 0.075269 0.354839 0.548387 0.086022 0.290323 0.075269 0.451613 0.193548 0.258065 0.096774 0.129032 0.107527 0.645161 0.118280 0.032258 0.473118 0.397849 0.096774 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBYNYDTGGCSBAGTGGKTWRRGS MEME-1 regular expression -------------------------------------------------------------------------------- [AT]G[GC][TCG][CT][CGT][CT][TGA]T[GA]G[CT][CG][TC]AGT[GT]G[TG][TA][AT][AG][AG]G[CG] -------------------------------------------------------------------------------- Time 339.42 secs. ******************************************************************************** ******************************************************************************** MOTIF KRRGRTCVBSGGTTCGATYCC MEME-2 width = 21 sites = 76 llr = 1267 E-value = 8.9e-228 ******************************************************************************** -------------------------------------------------------------------------------- Motif KRRGRTCVBSGGTTCGATYCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 235142:4:12::::3a2::: pos.-specific C 1:11118443::::a::14a7 probability G 453751:2358a:::7:2::: matrix T 311::62:31::aa:::56:3 bits 2.5 * * * 2.3 * * * 2.0 * * * 1.8 * * * Relative 1.5 * ******* * Entropy 1.3 * ******* ** (24.0 bits) 1.0 * * ******* *** 0.8 ** * ******** *** 0.5 **** *********** *** 0.3 ***************** *** 0.0 --------------------- Multilevel GGAGGTCCCGGGTTCGATTCC consensus TAG AATATCA A AC T sequence A GG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KRRGRTCVBSGGTTCGATYCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrV:551133-551550 - 5 8.89e-12 CTAATAACGC GGGGATCAGCGGTTCGATCCC GCTA chrXII:734623-735058 + 54 8.89e-12 CTAATAACGC GGGGATCAGCGGTTCGATCCC GCTAGAGACC chrIX:210472-210947 + 48 8.89e-12 CTAATAACGC GGGGATCAGCGGTTCGATCCC GCTAGAGACC chrIV:667816-668282 - 19 8.89e-12 CTAATAACGC GGGGATCAGCGGTTCGATCCC GCTAGAGACC chrXVI:880087-880563 - 32 8.89e-12 CTAATAACGC GGGGATCAGCGGTTCGATCCC GCTAGAGACC chrXII:1051877-1052346 - 21 8.89e-12 CTAATAACGC GGGGATCAGCGGTTCGATCCC GCTAGAGACC chrI:166046-166583 + 44 9.90e-11 CTTGCAAGGA AGAGGTCATCGGTTCGATTCC GGTTGCGTCC chrXV:853987-854450 - 30 9.90e-11 CTTGCAAGGA AGAGGTCATCGGTTCGATTCC GGTTGCGTCC chrXI:46542-47011 - 20 2.33e-10 CTCGTAATGC GGGGATCGTGGGTTCAATTCC CACAGAGGGC chrXIV:96044-96503 - 29 2.75e-10 CCTTCCAAGG TGGGGACACGGGTTCGATTCT CGTACCGCTC chrXV:110793-111248 - 3 2.75e-10 CCTTCCAAGG TGGGGACACGGGTTCGATTCT CG chrXVI:572015-572542 + 80 4.41e-10 GTTGCCATCG TTGGGCCCCCGGTTCGATTCC chrIV:83346-83791 + 69 4.41e-10 GTTGCCATCG TTGGGCCCCCGGTTCGATTCC GGGCTTGCGC chrXIII:183734-184158 - 13 4.41e-10 GTTGCCATCG TTGGGCCCCCGGTTCGATTCC GGGCTTGCGC chrVII:930755-931264 - 5 4.41e-10 GTTGCCATCG TTGGGCCCCCGGTTCGATTCC GGGC chrIV:644999-645422 - 4 6.93e-10 GTTTTGATCC GGACAACCCCGGTTCGAATCC GGG chrIV:802554-803020 - 5 6.93e-10 GTTTTGATCC GGACAACCCCGGTTCGAATCC GGGT chrV:354689-355303 + 28 9.28e-10 GCTTTCACCG TGGAGACCGGGGTTCGACTCC CCGTATCGGA chrVII:541580-542162 + 69 9.28e-10 GCTTTCACCG TGGAGACCGGGGTTCGACTCC CCGTATCGGA chrIV:1016939-1017511 - 43 9.28e-10 GTTCTCACCG TGGAGACCGGGGTTCGACTCC CCGCTTCGGA chrV:176873-177346 + 80 9.28e-10 GCTTTCACCG TGGAGACCGGGGTTCGACTCC chrVI:101163-101676 + 78 1.07e-09 AAAGCATGCG AGAGGCCCTGGGTTCAATTCC CA chrXIV:567892-568451 + 65 1.07e-09 AAAGCATGCG AGAGGCCCTGGGTTCAATTCC CAGCTCGCCC chrXV:300866-301438 + 65 1.07e-09 AAAGCATGCG AGAGGCCCTGGGTTCAATTCC CAGCTCGCCC chrIV:1201520-1202018 + 72 1.23e-09 CTCTTAATCA TAAGGTTAGGGGTTCGAGCCC CCTACAGG chrX:414779-414879 + 46 1.23e-09 CTCTTAATCA TAAGGTTAGGGGTTCGAGCCC CCTACAGGGC chrVII:876172-876700 + 49 1.23e-09 CTCTTAATCA TAAGGTTAGGGGTTCGAGCCC CCTACAGGGC chrV:135176-135717 - 40 1.23e-09 CTCTTAATCA TAAGGTTAGGGGTTCGAGCCC CCTACAGGGC chrXVI:581876-582366 + 32 1.23e-09 CTCTTAATCA TAAGGTTAGGGGTTCGAGCCC CCTACAGGGC chrVII:774124-774618 + 69 1.23e-09 TTAGCATGGG AGAGGTCTCCGGTTCGATTCC GGACTCGTCC chrXI:219689-220128 + 78 1.23e-09 TTAGCATGGG AGAGGTCTCCGGTTCGATTCC GG chrXI:202805-203309 + 33 1.23e-09 CTCTTAATCA TAAGGTTAGGGGTTCGAGCCC CCTACAGGGC chrIV:1075302-1075734 - 15 1.41e-09 TTCACACGGC AAAGGTCCCGAGTTCGATCCT CGGTTGGAAC chrIV:434002-434584 - 32 1.85e-09 CTAGTAATGT GGAGATCATCGGTTCAAATCC GATTGGAAGC chrII:266181-266685 + 36 1.85e-09 CTAGTAATGT GGAGATCATCGGTTCAAATCC GATTGGAAGC chrXIV:104610-105158 + 12 1.85e-09 CTAGTAATGT GGAGATCATCGGTTCAAATCC GATTGGAAGC chrX:58943-59043 - 4 1.85e-09 CTAGTAATGT GGAGATCATCGGTTCAAATCC GAT chrXIV:560471-560997 - 20 1.85e-09 CTAGTAATGT GGAGATCATCGGTTCAAATCC GATTGGAAGC chrIII:295272-295761 + 59 1.85e-09 CTAGTAATGT GGAGATCATCGGTTCAAATCC GATTGGAAGC chrII:326605-327080 - 11 2.41e-09 TTTACACGGC GAAGATCCCGAGTTCGAACCT CGGTTGGATC chrVII:405278-405751 + 46 2.74e-09 CTTCTAATCA GAAGATTATGGGTTCGACCCC CATCGTGAGT chrX:374211-374311 - 73 2.74e-09 CTAATCA GAAGATTATGGGTTCGACCCC CATCGTGAGT chrV:138431-139002 + 40 2.74e-09 CTTCTAATCA GAAGATTATGGGTTCGACCCC CATCGTGAGT chrVII:736143-736683 + 17 2.74e-09 CTTCTAATCA GAAGATTATGGGTTCGACCCC CATCGTGAGT chrXI:307996-308408 - 3 3.11e-09 TTAACACGCA GAACGTCCCCAGTTCGATCCT GG chrX:378154-378254 + 80 3.11e-09 TTAACACGCA GAACGTCCCCAGTTCGATCCT chrXVI:768967-769497 - 36 1.56e-08 AAGGATACCG AAATGTCAGGGGTTCGAGCCC CCTATGAGGA chrX:422675-422775 + 66 3.16e-08 CTCATAATCT GAAGGTCGAGAGTTCGAACCT CCCCTGGAGC chrX:390889-390989 - 5 3.16e-08 CTCATAATCT GAAGGTCGAGAGTTCGAACCT CCCC chrXIII:572672-573180 - 18 3.16e-08 CTCATAATCT GAAGGTCGAGAGTTCGAACCT CCCCTGGAGC chrIV:1095114-1095663 - 43 4.19e-08 CAAGATATCT GGAGGTCCTGTGTTCGATCCA CAGAGTTCGC chrIV:619782-620233 - 23 4.19e-08 CTACGAACCA GAAGATTCCAGGTTCAAGTCC TGGCGGGGAA chrVI:157724-158203 - 14 4.19e-08 CAAGTTATCT GGAGGTCCTGTGTTCGATCCA CAGAATTCGC chrXVI:55896-56529 - 18 5.51e-08 ATTGCAATCG AAGGGTTGCAGGTTCAATTCC TGTCCGTTTC chrIV:1305432-1305888 + 71 7.17e-08 TTTGGGCTTT GGCCCGCGCAGGTTCGAGTCC TGCAGTTGT chrVIII:466760-467244 + 78 1.18e-07 CTTGTAATGC AAAGGTCGCTAGTTCAATTCT GG chrXVI:435675-436193 - 20 1.38e-07 TTGCAAATCT GTTGGTCCTTAGTTCGATCCT GAGTGCGAGC chrVII:706924-707382 - 16 1.38e-07 TTGCAAATCT GTTGGTCCTTAGTTCGATCCT GAGTGCGAGC chrVII:561416-561958 - 36 1.49e-07 TTTTGGGCTT TGCCCGCGCAGGTTCGAGTCC TGCAGTTGTC chrX:523798-523898 - 20 1.49e-07 TTTTGGGCTT TGCCCGCGCAGGTTCGAGTCC TGCAGTTGTC chrVII:544419-544856 - 1 2.01e-07 CTTGTCGCGT GCCAGATCGGGGTTCAATTCC chrX:541301-541401 + 58 2.01e-07 CTTGTCGCGT GCCAGATCGGGGTTCAATTCC CCGTCGCGGA chrXIII:463358-463870 + 30 2.01e-07 CTTGTCGCGT GCCAGATCGGGGTTCAATTCC CCGTCGCGGA chrV:207141-207622 + 66 2.16e-07 GTTGTGGCCG ATGAAACCCTGGTTCGATTCT AGGAGATGGC chrVII:110424-110913 - 18 2.16e-07 GTTGTGGCCG ATGAAACCCTGGTTCGATTCT AGGAGATGGC chrVII:319583-320060 + 50 2.16e-07 GTTGTGGCCG ATGAAACCCTGGTTCGATTCT AGGAGATGGC chrVI:137265-137768 - 31 2.16e-07 CTGTTAATCG CAAGATCGTGAGTTCAACCCT CACTGGGGTC chrXVI:744082-744556 + 55 2.16e-07 CTTGTAATGC AAAGGTCGTTAGTTCAATTCT GACAGGTGGC chrXIV:102520-102977 + 60 2.16e-07 CTGTTAATCG CAAGATCGTGAGTTCAACCCT CACTGGGGTC chrXIII:362864-363312 + 66 2.16e-07 GTTGTGGCCG ATGAAACCCTGGTTCGATTCT AGGAGATGGC chrXV:228111-228583 + 76 2.16e-07 CTGTTAATCG CAAGATCGTGAGTTCAACCCT CACT chrXII:818423-818820 + 78 3.07e-07 CTTCCGGTGG CTGTGATCCGGGTTCGAGTCC CG chrXVI:689329-689841 + 80 4.00e-07 TGTTGGGCTC TGCCCGCGCTGGTTCAAATCC chrII:347397-347865 + 74 5.46e-07 GTTGGACGGT TGTCCGCGCGAGTTCGAACCT CGCATC chrIV:519543-519997 + 75 5.46e-07 GTTGGACGGT TGTCCGCGCGAGTTCGAACCT CGCAT chrIV:1150649-1151156 - 1 1.25e-06 CATTGGGTTT TACCTGCGCAGGTTCGAATCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KRRGRTCVBSGGTTCGATYCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:551133-551550 8.9e-12 4_[-2]_75 chrXII:734623-735058 8.9e-12 53_[+2]_26 chrIX:210472-210947 8.9e-12 47_[+2]_32 chrIV:667816-668282 8.9e-12 18_[-2]_61 chrXVI:880087-880563 8.9e-12 31_[-2]_48 chrXII:1051877-1052346 8.9e-12 20_[-2]_59 chrI:166046-166583 9.9e-11 43_[+2]_36 chrXV:853987-854450 9.9e-11 29_[-2]_50 chrXI:46542-47011 2.3e-10 19_[-2]_60 chrXIV:96044-96503 2.7e-10 28_[-2]_51 chrXV:110793-111248 2.7e-10 2_[-2]_77 chrXVI:572015-572542 4.4e-10 79_[+2] chrIV:83346-83791 4.4e-10 68_[+2]_11 chrXIII:183734-184158 4.4e-10 12_[-2]_67 chrVII:930755-931264 4.4e-10 4_[-2]_75 chrIV:644999-645422 6.9e-10 3_[-2]_76 chrIV:802554-803020 6.9e-10 4_[-2]_75 chrV:354689-355303 9.3e-10 27_[+2]_52 chrVII:541580-542162 9.3e-10 68_[+2]_11 chrIV:1016939-1017511 9.3e-10 42_[-2]_37 chrV:176873-177346 9.3e-10 79_[+2] chrVI:101163-101676 1.1e-09 77_[+2]_2 chrXIV:567892-568451 1.1e-09 64_[+2]_15 chrXV:300866-301438 1.1e-09 64_[+2]_15 chrIV:1201520-1202018 1.2e-09 71_[+2]_8 chrX:414779-414879 1.2e-09 45_[+2]_34 chrVII:876172-876700 1.2e-09 48_[+2]_31 chrV:135176-135717 1.2e-09 39_[-2]_40 chrXVI:581876-582366 1.2e-09 31_[+2]_48 chrVII:774124-774618 1.2e-09 68_[+2]_11 chrXI:219689-220128 1.2e-09 77_[+2]_2 chrXI:202805-203309 1.2e-09 32_[+2]_47 chrIV:1075302-1075734 1.4e-09 14_[-2]_65 chrIV:434002-434584 1.9e-09 31_[-2]_48 chrII:266181-266685 1.9e-09 35_[+2]_44 chrXIV:104610-105158 1.9e-09 11_[+2]_68 chrX:58943-59043 1.9e-09 3_[-2]_76 chrXIV:560471-560997 1.9e-09 19_[-2]_60 chrIII:295272-295761 1.9e-09 58_[+2]_21 chrII:326605-327080 2.4e-09 10_[-2]_69 chrVII:405278-405751 2.7e-09 45_[+2]_34 chrX:374211-374311 2.7e-09 72_[-2]_7 chrV:138431-139002 2.7e-09 39_[+2]_40 chrVII:736143-736683 2.7e-09 16_[+2]_63 chrXI:307996-308408 3.1e-09 2_[-2]_77 chrX:378154-378254 3.1e-09 79_[+2] chrXVI:768967-769497 1.6e-08 35_[-2]_44 chrX:422675-422775 3.2e-08 65_[+2]_14 chrX:390889-390989 3.2e-08 4_[-2]_75 chrXIII:572672-573180 3.2e-08 17_[-2]_62 chrIV:1095114-1095663 4.2e-08 42_[-2]_37 chrIV:619782-620233 4.2e-08 22_[-2]_57 chrVI:157724-158203 4.2e-08 13_[-2]_66 chrXVI:55896-56529 5.5e-08 17_[-2]_62 chrIV:1305432-1305888 7.2e-08 70_[+2]_9 chrVIII:466760-467244 1.2e-07 77_[+2]_2 chrXVI:435675-436193 1.4e-07 19_[-2]_60 chrVII:706924-707382 1.4e-07 15_[-2]_64 chrVII:561416-561958 1.5e-07 35_[-2]_44 chrX:523798-523898 1.5e-07 19_[-2]_60 chrVII:544419-544856 2e-07 [-2]_79 chrX:541301-541401 2e-07 57_[+2]_22 chrXIII:463358-463870 2e-07 29_[+2]_50 chrV:207141-207622 2.2e-07 65_[+2]_14 chrVII:110424-110913 2.2e-07 17_[-2]_62 chrVII:319583-320060 2.2e-07 49_[+2]_30 chrVI:137265-137768 2.2e-07 30_[-2]_49 chrXVI:744082-744556 2.2e-07 54_[+2]_25 chrXIV:102520-102977 2.2e-07 59_[+2]_20 chrXIII:362864-363312 2.2e-07 65_[+2]_14 chrXV:228111-228583 2.2e-07 75_[+2]_4 chrXII:818423-818820 3.1e-07 77_[+2]_2 chrXVI:689329-689841 4e-07 79_[+2] chrII:347397-347865 5.5e-07 73_[+2]_6 chrIV:519543-519997 5.5e-07 74_[+2]_5 chrIV:1150649-1151156 1.2e-06 [-2]_79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KRRGRTCVBSGGTTCGATYCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KRRGRTCVBSGGTTCGATYCC width=21 seqs=76 chrV:551133-551550 ( 5) GGGGATCAGCGGTTCGATCCC 1 chrXII:734623-735058 ( 54) GGGGATCAGCGGTTCGATCCC 1 chrIX:210472-210947 ( 48) GGGGATCAGCGGTTCGATCCC 1 chrIV:667816-668282 ( 19) GGGGATCAGCGGTTCGATCCC 1 chrXVI:880087-880563 ( 32) GGGGATCAGCGGTTCGATCCC 1 chrXII:1051877-1052346 ( 21) GGGGATCAGCGGTTCGATCCC 1 chrI:166046-166583 ( 44) AGAGGTCATCGGTTCGATTCC 1 chrXV:853987-854450 ( 30) AGAGGTCATCGGTTCGATTCC 1 chrXI:46542-47011 ( 20) GGGGATCGTGGGTTCAATTCC 1 chrXIV:96044-96503 ( 29) TGGGGACACGGGTTCGATTCT 1 chrXV:110793-111248 ( 3) TGGGGACACGGGTTCGATTCT 1 chrXVI:572015-572542 ( 80) TTGGGCCCCCGGTTCGATTCC 1 chrIV:83346-83791 ( 69) TTGGGCCCCCGGTTCGATTCC 1 chrXIII:183734-184158 ( 13) TTGGGCCCCCGGTTCGATTCC 1 chrVII:930755-931264 ( 5) TTGGGCCCCCGGTTCGATTCC 1 chrIV:644999-645422 ( 4) GGACAACCCCGGTTCGAATCC 1 chrIV:802554-803020 ( 5) GGACAACCCCGGTTCGAATCC 1 chrV:354689-355303 ( 28) TGGAGACCGGGGTTCGACTCC 1 chrVII:541580-542162 ( 69) TGGAGACCGGGGTTCGACTCC 1 chrIV:1016939-1017511 ( 43) TGGAGACCGGGGTTCGACTCC 1 chrV:176873-177346 ( 80) TGGAGACCGGGGTTCGACTCC 1 chrVI:101163-101676 ( 78) AGAGGCCCTGGGTTCAATTCC 1 chrXIV:567892-568451 ( 65) AGAGGCCCTGGGTTCAATTCC 1 chrXV:300866-301438 ( 65) AGAGGCCCTGGGTTCAATTCC 1 chrIV:1201520-1202018 ( 72) TAAGGTTAGGGGTTCGAGCCC 1 chrX:414779-414879 ( 46) TAAGGTTAGGGGTTCGAGCCC 1 chrVII:876172-876700 ( 49) TAAGGTTAGGGGTTCGAGCCC 1 chrV:135176-135717 ( 40) TAAGGTTAGGGGTTCGAGCCC 1 chrXVI:581876-582366 ( 32) TAAGGTTAGGGGTTCGAGCCC 1 chrVII:774124-774618 ( 69) AGAGGTCTCCGGTTCGATTCC 1 chrXI:219689-220128 ( 78) AGAGGTCTCCGGTTCGATTCC 1 chrXI:202805-203309 ( 33) TAAGGTTAGGGGTTCGAGCCC 1 chrIV:1075302-1075734 ( 15) AAAGGTCCCGAGTTCGATCCT 1 chrIV:434002-434584 ( 32) GGAGATCATCGGTTCAAATCC 1 chrII:266181-266685 ( 36) GGAGATCATCGGTTCAAATCC 1 chrXIV:104610-105158 ( 12) GGAGATCATCGGTTCAAATCC 1 chrX:58943-59043 ( 4) GGAGATCATCGGTTCAAATCC 1 chrXIV:560471-560997 ( 20) GGAGATCATCGGTTCAAATCC 1 chrIII:295272-295761 ( 59) GGAGATCATCGGTTCAAATCC 1 chrII:326605-327080 ( 11) GAAGATCCCGAGTTCGAACCT 1 chrVII:405278-405751 ( 46) GAAGATTATGGGTTCGACCCC 1 chrX:374211-374311 ( 73) GAAGATTATGGGTTCGACCCC 1 chrV:138431-139002 ( 40) GAAGATTATGGGTTCGACCCC 1 chrVII:736143-736683 ( 17) GAAGATTATGGGTTCGACCCC 1 chrXI:307996-308408 ( 3) GAACGTCCCCAGTTCGATCCT 1 chrX:378154-378254 ( 80) GAACGTCCCCAGTTCGATCCT 1 chrXVI:768967-769497 ( 36) AAATGTCAGGGGTTCGAGCCC 1 chrX:422675-422775 ( 66) GAAGGTCGAGAGTTCGAACCT 1 chrX:390889-390989 ( 5) GAAGGTCGAGAGTTCGAACCT 1 chrXIII:572672-573180 ( 18) GAAGGTCGAGAGTTCGAACCT 1 chrIV:1095114-1095663 ( 43) GGAGGTCCTGTGTTCGATCCA 1 chrIV:619782-620233 ( 23) GAAGATTCCAGGTTCAAGTCC 1 chrVI:157724-158203 ( 14) GGAGGTCCTGTGTTCGATCCA 1 chrXVI:55896-56529 ( 18) AAGGGTTGCAGGTTCAATTCC 1 chrIV:1305432-1305888 ( 71) GGCCCGCGCAGGTTCGAGTCC 1 chrVIII:466760-467244 ( 78) AAAGGTCGCTAGTTCAATTCT 1 chrXVI:435675-436193 ( 20) GTTGGTCCTTAGTTCGATCCT 1 chrVII:706924-707382 ( 16) GTTGGTCCTTAGTTCGATCCT 1 chrVII:561416-561958 ( 36) TGCCCGCGCAGGTTCGAGTCC 1 chrX:523798-523898 ( 20) TGCCCGCGCAGGTTCGAGTCC 1 chrVII:544419-544856 ( 1) GCCAGATCGGGGTTCAATTCC 1 chrX:541301-541401 ( 58) GCCAGATCGGGGTTCAATTCC 1 chrXIII:463358-463870 ( 30) GCCAGATCGGGGTTCAATTCC 1 chrV:207141-207622 ( 66) ATGAAACCCTGGTTCGATTCT 1 chrVII:110424-110913 ( 18) ATGAAACCCTGGTTCGATTCT 1 chrVII:319583-320060 ( 50) ATGAAACCCTGGTTCGATTCT 1 chrVI:137265-137768 ( 31) CAAGATCGTGAGTTCAACCCT 1 chrXVI:744082-744556 ( 55) AAAGGTCGTTAGTTCAATTCT 1 chrXIV:102520-102977 ( 60) CAAGATCGTGAGTTCAACCCT 1 chrXIII:362864-363312 ( 66) ATGAAACCCTGGTTCGATTCT 1 chrXV:228111-228583 ( 76) CAAGATCGTGAGTTCAACCCT 1 chrXII:818423-818820 ( 78) CTGTGATCCGGGTTCGAGTCC 1 chrXVI:689329-689841 ( 80) TGCCCGCGCTGGTTCAAATCC 1 chrII:347397-347865 ( 74) TGTCCGCGCGAGTTCGAACCT 1 chrIV:519543-519997 ( 75) TGTCCGCGCGAGTTCGAACCT 1 chrIV:1150649-1151156 ( 1) TACCTGCGCAGGTTCGAATCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KRRGRTCVBSGGTTCGATYCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 46880 bayes= 9.46153 E= 8.9e-228 -63 -172 136 -17 7 -214 144 -117 73 -72 80 -263 -117 -27 198 -363 18 -114 163 -463 -63 -92 -92 89 -1289 218 -1289 -63 12 118 36 -363 -304 113 60 -5 -205 86 148 -146 -63 -1289 213 -363 -1289 -1289 252 -1289 -1289 -1289 -1289 162 -1289 -1289 -1289 162 -1289 252 -1289 -1289 -24 -1289 206 -1289 162 -1289 -1289 -1289 -63 -27 -14 58 -1289 132 -1289 80 -1289 252 -1289 -1289 -363 198 -1289 -17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KRRGRTCVBSGGTTCGATYCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 76 E= 8.9e-228 0.210526 0.052632 0.447368 0.289474 0.342105 0.039474 0.473684 0.144737 0.539474 0.105263 0.302632 0.052632 0.144737 0.144737 0.684211 0.026316 0.368421 0.078947 0.539474 0.013158 0.210526 0.092105 0.092105 0.605263 0.000000 0.789474 0.000000 0.210526 0.355263 0.394737 0.223684 0.026316 0.039474 0.381579 0.263158 0.315789 0.078947 0.315789 0.486842 0.118421 0.210526 0.000000 0.763158 0.026316 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.276316 0.000000 0.723684 0.000000 1.000000 0.000000 0.000000 0.000000 0.210526 0.144737 0.157895 0.486842 0.000000 0.434211 0.000000 0.565789 0.000000 1.000000 0.000000 0.000000 0.026316 0.684211 0.000000 0.289474 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KRRGRTCVBSGGTTCGATYCC MEME-2 regular expression -------------------------------------------------------------------------------- [GTA][GA][AG]G[GA][TA][CT][CAG][CTG][GC][GA]GTTC[GA]A[TA][TC]C[CT] -------------------------------------------------------------------------------- Time 634.52 secs. ******************************************************************************** ******************************************************************************** MOTIF CMCWCACMCACACAMMCAYACCACACCCA MEME-3 width = 29 sites = 20 llr = 490 E-value = 3.4e-074 ******************************************************************************** -------------------------------------------------------------------------------- Motif CMCWCACMCACACAMMCAYACCACACCCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 35:617:4:819:734:8:a1:8181:27 pos.-specific C 768183a6927:8267a2718a:918963 probability G 1:1:2::::1::1:::::::::1:11:11 matrix T ::2311112:32221::14:1:2111211 bits 2.5 * * 2.3 * * * 2.0 * * * 1.8 * * * * * * Relative 1.5 * * * ** * ** Entropy 1.3 * * * * * * * ** **** * ** (35.4 bits) 1.0 *** * *** *** ** **** * ** 0.8 *** ********* ********** *** 0.5 ***************************** 0.3 ***************************** 0.0 ----------------------------- Multilevel CCCACACCCACACACCCACACCACACCCA consensus AATT C A CT TCAA T T AC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMCWCACMCACACAMMCAYACCACACCCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXII:11032-11558 + 65 5.04e-20 CACCCACACA CCCACACCCACACACCCACACCACACCCA CACCCAC chrXIV:6452-6902 + 10 2.28e-18 CACCCACAC ACCACACCCACACACCCACACCACACCCA CACCCACACA chrIII:30-564 + 16 5.79e-18 CCACACACAC CACACCCACACACACCCACACCACACCCA CACACCACAC chrVIII:556622-557228 - 27 1.47e-17 CACACACACC CACACACACCCACACCCACACCACACCCA CACCCACACA chrVI:4437-5010 + 37 1.84e-17 ACACCACACC CACACACCCACACCCACACACCACACCCA CACCACACCC chrVIII:562243-562641 - 67 1.84e-17 CCACA CACACACCCACACCCACACACCACACCCA CACTTTTCAC chrXIII:5296-5814 + 48 7.26e-17 ACACCCACAC ACCACACCCACACCCACACACCACACCCA CACACCCTAA chrXII:1064839-1065363 - 57 1.38e-16 CCCACACCCA CACCCACACCCACACCCACACCACACCCA CCACACCCAC chrV:6146-6589 + 23 4.53e-13 AGTTACTTCA CCCACACCCACACCCACACACCATGCTCA CCTTCACTTG chrXII:5443-5938 + 51 6.14e-13 ACCCACACCA CACCCACACCCACACACACCACACACCCA CACACTCTCT chrXV:32-303 + 71 4.51e-11 CCACTCGTTA CCCTGCCCCATTTAACCATACCACAGCGA A chrI:29-260 + 56 5.72e-11 CCACTCGTTA CCCTGTCCCATTCAACCATACCACTCCGA ACCACCATCC chrXIV:783826-784190 - 64 1.14e-10 ACACACAC CACACCCACACACTACCCTAACACTACCC TAACACTACC chrIV:42-355 + 56 3.61e-10 TGTCTCCAAA CCTACCCTCACATTACCCTACCTCCCCAC TCGTTACCCT chrIV:1525299-1525679 - 15 1.05e-09 GCATGCAATA CAGTGACATATATATACACACCACACCAC ACCCACACAC chrXV:505105-505503 + 43 1.86e-09 TCATTTCAAA CCCATACACAATGAACCTTATCACACCCA AACATATGAT chrVII:479235-480105 - 6 2.23e-09 TCAACTCTTA GCTTCACACACACACACACACCGAAGCTG GTTGT chrIV:221964-222336 - 22 5.10e-09 CACGACGGTT ACCACACCCGTACACCCTTATCTCATTTC ACCAGTACCT chrVII:26-204 + 21 1.37e-08 CCTTCTCACA ACTTACCCTCCATTACCCTACCTCCCCAC TCGTTACCCT chrX:75333-75433 - 30 1.88e-08 AAAAGTGTGT AATTCCTCTATACATCCACACCTCACTAT TTGAAAAACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMCWCACMCACACAMMCAYACCACACCCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:11032-11558 5e-20 64_[+3]_7 chrXIV:6452-6902 2.3e-18 9_[+3]_62 chrIII:30-564 5.8e-18 15_[+3]_56 chrVIII:556622-557228 1.5e-17 26_[-3]_45 chrVI:4437-5010 1.8e-17 36_[+3]_35 chrVIII:562243-562641 1.8e-17 66_[-3]_5 chrXIII:5296-5814 7.3e-17 47_[+3]_24 chrXII:1064839-1065363 1.4e-16 56_[-3]_15 chrV:6146-6589 4.5e-13 22_[+3]_49 chrXII:5443-5938 6.1e-13 50_[+3]_21 chrXV:32-303 4.5e-11 70_[+3]_1 chrI:29-260 5.7e-11 55_[+3]_16 chrXIV:783826-784190 1.1e-10 63_[-3]_8 chrIV:42-355 3.6e-10 55_[+3]_16 chrIV:1525299-1525679 1.1e-09 14_[-3]_57 chrXV:505105-505503 1.9e-09 42_[+3]_29 chrVII:479235-480105 2.2e-09 5_[-3]_66 chrIV:221964-222336 5.1e-09 21_[-3]_50 chrVII:26-204 1.4e-08 20_[+3]_51 chrX:75333-75433 1.9e-08 29_[-3]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMCWCACMCACACAMMCAYACCACACCCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CMCWCACMCACACAMMCAYACCACACCCA width=29 seqs=20 chrXII:11032-11558 ( 65) CCCACACCCACACACCCACACCACACCCA 1 chrXIV:6452-6902 ( 10) ACCACACCCACACACCCACACCACACCCA 1 chrIII:30-564 ( 16) CACACCCACACACACCCACACCACACCCA 1 chrVIII:556622-557228 ( 27) CACACACACCCACACCCACACCACACCCA 1 chrVI:4437-5010 ( 37) CACACACCCACACCCACACACCACACCCA 1 chrVIII:562243-562641 ( 67) CACACACCCACACCCACACACCACACCCA 1 chrXIII:5296-5814 ( 48) ACCACACCCACACCCACACACCACACCCA 1 chrXII:1064839-1065363 ( 57) CACCCACACCCACACCCACACCACACCCA 1 chrV:6146-6589 ( 23) CCCACACCCACACCCACACACCATGCTCA 1 chrXII:5443-5938 ( 51) CACCCACACCCACACACACCACACACCCA 1 chrXV:32-303 ( 71) CCCTGCCCCATTTAACCATACCACAGCGA 1 chrI:29-260 ( 56) CCCTGTCCCATTCAACCATACCACTCCGA 1 chrXIV:783826-784190 ( 64) CACACCCACACACTACCCTAACACTACCC 1 chrIV:42-355 ( 56) CCTACCCTCACATTACCCTACCTCCCCAC 1 chrIV:1525299-1525679 ( 15) CAGTGACATATATATACACACCACACCAC 1 chrXV:505105-505503 ( 43) CCCATACACAATGAACCTTATCACACCCA 1 chrVII:479235-480105 ( 6) GCTTCACACACACACACACACCGAAGCTG 1 chrIV:221964-222336 ( 22) ACCACACCCGTACACCCTTATCTCATTTC 1 chrVII:26-204 ( 21) ACTTACCCTCCATTACCCTACCTCCCCAC 1 chrX:75333-75433 ( 30) AATTCCTCTATACATCCACACCTCACTAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMCWCACMCACACAMMCAYACCACACCCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 42192 bayes= 11.2937 E= 3.4e-074 -38 201 -180 -1097 46 166 -1097 -1097 -1097 211 -180 -70 88 -80 -1097 -12 -270 211 -21 -270 100 79 -1097 -270 -1097 245 -1097 -270 29 166 -1097 -270 -1097 229 -1097 -112 120 20 -180 -1097 -270 201 -1097 -38 138 -1097 -1097 -112 -1097 211 -180 -70 100 20 -1097 -112 -12 179 -1097 -170 10 190 -1097 -1097 -1097 252 -1097 -1097 120 -21 -1097 -170 -1097 190 -1097 10 154 -180 -1097 -1097 -170 220 -1097 -170 -1097 252 -1097 -1097 120 -1097 -180 -70 -270 237 -1097 -270 120 -80 -180 -170 -270 220 -80 -270 -1097 229 -1097 -112 -70 179 -80 -170 100 52 -180 -270 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMCWCACMCACACAMMCAYACCACACCCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 20 E= 3.4e-074 0.250000 0.700000 0.050000 0.000000 0.450000 0.550000 0.000000 0.000000 0.000000 0.750000 0.050000 0.200000 0.600000 0.100000 0.000000 0.300000 0.050000 0.750000 0.150000 0.050000 0.650000 0.300000 0.000000 0.050000 0.000000 0.950000 0.000000 0.050000 0.400000 0.550000 0.000000 0.050000 0.000000 0.850000 0.000000 0.150000 0.750000 0.200000 0.050000 0.000000 0.050000 0.700000 0.000000 0.250000 0.850000 0.000000 0.000000 0.150000 0.000000 0.750000 0.050000 0.200000 0.650000 0.200000 0.000000 0.150000 0.300000 0.600000 0.000000 0.100000 0.350000 0.650000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.150000 0.000000 0.100000 0.000000 0.650000 0.000000 0.350000 0.950000 0.050000 0.000000 0.000000 0.100000 0.800000 0.000000 0.100000 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.050000 0.200000 0.050000 0.900000 0.000000 0.050000 0.750000 0.100000 0.050000 0.100000 0.050000 0.800000 0.100000 0.050000 0.000000 0.850000 0.000000 0.150000 0.200000 0.600000 0.100000 0.100000 0.650000 0.250000 0.050000 0.050000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMCWCACMCACACAMMCAYACCACACCCA MEME-3 regular expression -------------------------------------------------------------------------------- [CA][CA][CT][AT]C[AC]C[CA]C[AC][CT]A[CT][AC][CA][CA]CA[CT]ACC[AT]CACC[CA][AC] -------------------------------------------------------------------------------- Time 924.78 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXI:618813-619236 6.94e-02 100 chrXI:326159-326766 3.51e-01 100 chrXII:263884-264063 9.92e-01 100 chrIV:884161-884617 1.59e-07 20_[+1(1.45e-10)]_54 chrXVI:303989-304306 3.22e-01 100 chrXII:5443-5938 2.47e-09 50_[+3(6.14e-13)]_21 chrVII:736143-736683 8.32e-06 16_[+2(2.74e-09)]_63 chrIV:1354791-1355231 9.96e-01 100 chrIX:256638-257078 8.07e-01 100 chrVII:919949-920227 6.47e-01 100 chrXV:1025723-1026030 7.88e-01 100 chrXIII:753628-754068 4.10e-02 100 chrIV:437516-438012 3.47e-07 56_[+1(1.70e-11)]_18 chrVII:555148-555696 9.17e-01 100 chrIV:45987-46186 7.57e-01 100 chrXV:300866-301438 7.47e-07 64_[+2(1.07e-09)]_15 chrXVI:280790-281303 1.30e-02 100 chrIII:127537-127909 6.25e-05 41_[+1(5.23e-09)]_33 chrIII:308470-308910 5.91e-01 100 chrXI:202805-203309 1.18e-05 32_[+2(1.23e-09)]_47 chrXIII:671530-671681 9.36e-01 100 chrXIII:372298-372749 1.56e-05 20_[-1(1.14e-09)]_54 chrXVI:731915-732327 3.25e-01 100 chrIV:129979-130431 7.70e-01 100 chrXVI:73917-74357 7.61e-02 100 chrXIV:500373-500777 6.13e-01 100 chrV:268081-268261 3.22e-01 100 chrVI:64330-64474 9.96e-01 100 chrXIII:761834-762256 9.01e-01 100 chrIV:117928-118166 8.30e-01 100 chrXV:444979-445419 4.15e-01 100 chrX:378154-378254 6.38e-13 36_[+1(8.81e-10)]_17_[+2(3.11e-09)] chrXV:725244-725588 6.69e-01 100 chrXV:94469-94844 8.42e-01 100 chrVIII:466760-467244 9.38e-09 36_[+1(1.99e-08)]_15_[+2(1.18e-07)]_\ 2 chrXII:710114-710319 4.50e-01 100 chrIV:1150649-1151156 1.21e-09 [-2(1.25e-06)]_43_[-1(3.45e-10)]_10 chrXV:876865-877305 8.87e-01 100 chrXI:490751-491180 1.75e-02 51_[+1(2.94e-05)]_23 chrXII:817953-818119 9.73e-01 100 chrIX:316826-317151 6.45e-01 100 chrXVI:939674-939896 8.22e-01 100 chrXII:282492-282881 7.25e-01 100 chrIV:428380-428594 9.97e-01 100 chrXII:232193-233907 2.38e-01 100 chrXV:81067-81311 8.49e-01 100 chrXI:142593-143033 8.41e-01 100 chrVII:479235-480105 7.31e-06 5_[-3(2.23e-09)]_66 chrXV:1028634-1029128 9.30e-01 100 chrXI:322944-323384 2.64e-01 100 chrXII:637513-637669 4.81e-01 100 chrXI:307996-308408 8.11e-13 2_[-2(3.11e-09)]_17_[-1(1.14e-09)]_\ 34 chrXII:709038-709478 3.28e-01 100 chrXI:109610-109825 2.26e-01 100 chrIX:438838-439366 3.41e-01 100 chrII:88957-89397 9.03e-01 100 chrXIII:499845-500103 4.98e-01 100 chrIV:519543-519997 2.91e-09 21_[+1(1.46e-09)]_27_[+2(5.46e-07)]_\ 5 chrXV:622306-622746 1.29e-01 100 chrIII:295272-295761 5.04e-12 16_[+1(3.00e-10)]_16_[+2(1.85e-09)]_\ 21 chrV:139698-140307 7.71e-01 100 chrIV:339051-339491 8.53e-01 100 chrXIII:892647-892855 1.95e-01 100 chrXVI:795723-796014 7.92e-01 100 chrXII:962832-963305 3.73e-06 12_[-1(1.46e-09)]_62 chrIV:117138-117584 3.40e-03 63_[+3(6.18e-07)]_8 chrV:305654-306207 5.53e-01 100 chrXV:620254-620463 9.47e-01 100 chrII:375342-375782 7.16e-01 100 chrXV:1006607-1007047 7.35e-01 100 chrXV:564146-564586 9.80e-01 100 chrII:478960-479261 8.84e-01 100 chrVI:83881-84370 7.07e-01 100 chrX:519359-519459 6.60e-01 100 chrXVI:329194-329634 2.85e-01 100 chrXIII:732001-732421 8.40e-01 100 chrIV:1352315-1352755 1.09e-05 28_[-1(3.34e-09)]_46 chrVIII:125900-126318 9.04e-02 100 chrXII:712985-713566 7.83e-01 100 chrII:256701-256950 9.82e-01 100 chrX:617706-617806 3.19e-08 39_[+1(2.89e-11)]_35 chrXI:551809-552249 2.17e-01 100 chrXVI:338716-339109 3.21e-04 32_[-1(5.91e-07)]_42 chrXII:929249-929689 8.14e-01 100 chrXIV:174309-174599 8.09e-01 100 chrXII:1002220-1002660 8.23e-01 100 chrXIV:626684-627124 7.09e-01 100 chrII:232427-232867 5.56e-01 100 chrVII:476485-476925 2.20e-01 100 chrXII:930836-931092 2.06e-01 100 chrIV:490864-491293 3.18e-01 100 chrVII:535523-535792 8.16e-01 100 chrIII:169321-169761 1.43e-01 24_[+3(8.96e-05)]_47 chrXV:977986-978404 3.12e-01 100 chrVI:265423-265863 9.88e-01 100 chrIII:11017-11525 9.30e-01 100 chrXIV:157433-157873 8.75e-01 100 chrXI:55527-55967 8.82e-01 100 chrII:236864-237228 1.99e-01 100 chrV:102301-102513 7.26e-01 100 chrXVI:856703-857116 1.50e-08 41_[+1(5.44e-12)]_33 chrXII:919098-919538 5.23e-01 100 chrXV:867779-868141 3.91e-01 100 chrXIII:370653-371093 9.50e-01 100 chrXIV:722892-723332 1.79e-01 100 chrII:417781-418221 9.53e-01 100 chrIV:125336-125595 2.53e-03 60_[+2(4.59e-05)]_19 chrXV:623492-623619 5.07e-01 100 chrII:374956-375171 9.74e-01 100 chrXIV:25222-25662 5.89e-02 100 chrXIII:500844-501284 1.72e-01 100 chrXIV:6452-6902 4.43e-15 9_[+3(2.28e-18)]_8_[+3(4.43e-10)]_\ 25 chrVII:700482-701265 2.51e-01 100 chrXI:219689-220128 5.75e-15 35_[+1(2.37e-12)]_16_[+2(1.23e-09)]_\ 2 chrVIII:85171-85576 3.57e-06 23_[-1(1.14e-09)]_51 chrXV:35691-36131 8.23e-01 100 chrXIV:157218-157658 7.82e-01 100 chrIX:299179-299619 8.81e-01 100 chrXIII:195885-196422 7.29e-07 42_[-1(4.68e-09)]_32 chrVII:476241-476681 2.59e-01 100 chrXVI:768967-769497 1.96e-05 35_[-2(1.56e-08)]_44 chrXIII:57454-57894 4.57e-01 100 chrI:142157-142658 6.35e-01 100 chrXIV:560471-560997 1.63e-11 19_[-2(1.85e-09)]_16_[-1(1.86e-09)]_\ 18 chrVII:930755-931264 1.03e-10 4_[-2(4.41e-10)]_14_[-1(2.65e-08)]_\ 35 chrVII:26-204 3.95e-06 20_[+3(1.37e-08)]_51 chrIV:1021877-1022032 6.11e-01 100 chrXII:790337-790777 4.86e-01 100 chrXV:127228-127668 7.90e-01 100 chrII:237823-238263 5.08e-01 100 chrX:139228-139328 7.83e-01 100 chrII:414758-415198 5.19e-01 100 chrIV:1270014-1270454 4.55e-01 100 chrXVI:407518-407787 7.87e-01 100 chrIV:341254-341630 3.43e-02 100 chrII:557986-558426 8.18e-01 100 chrII:81927-82367 1.18e-01 100 chrX:58943-59043 5.04e-12 3_[-2(1.85e-09)]_16_[-1(3.00e-10)]_\ 34 chrVII:882454-883187 2.50e-01 100 chrIV:579342-580082 1.24e-01 100 chrXII:796413-796881 3.75e-01 100 chrV:176873-177346 1.51e-06 79_[+2(9.28e-10)] chrVII:25380-25749 9.57e-01 100 chrXII:241600-242014 1.31e-01 100 chrXIV:505539-505864 8.35e-01 100 chrXIII:5296-5814 2.23e-13 47_[+3(7.26e-17)]_24 chrXII:1018983-1019377 6.99e-01 100 chrXIII:549969-550203 1.00e+00 100 chrV:101409-101593 5.42e-01 100 chrX:413789-413889 5.95e-01 100 chrXIV:575296-575728 8.68e-01 100 chrXV:544-1067 6.01e-01 100 chrXVI:323630-324070 7.29e-01 100 chrXIII:572672-573180 6.55e-09 17_[-2(3.16e-08)]_16_[-1(5.48e-08)]_\ 20 chrXIII:296769-298421 9.97e-01 100 chrXII:199215-199630 4.17e-01 100 chrVII:826984-827242 7.96e-01 100 chrV:85124-85460 1.16e-01 100 chrXV:896400-896840 8.24e-01 100 chrXV:92920-93424 5.63e-01 100 chrXII:1028178-1028582 8.40e-01 100 chrXIII:463358-463870 4.17e-04 29_[+2(2.01e-07)]_50 chrII:326605-327080 3.38e-09 10_[-2(2.41e-09)]_17_[-1(1.73e-07)]_\ 26 chrX:213755-213855 9.86e-01 100 chrXIII:578379-578819 5.81e-01 100 chrXII:899308-899581 8.63e-01 100 chrXV:900723-900948 9.94e-01 100 chrXI:302673-303207 5.99e-03 26_[+1(4.18e-06)]_48 chrXIV:507152-507362 4.33e-02 10_[+2(4.93e-05)]_69 chrI:229223-229722 4.04e-01 100 chrXVI:731064-731234 1.69e-01 100 chrX:651231-651331 4.59e-02 43_[+3(4.23e-05)]_28 chrXIV:229702-230147 8.95e-01 100 chrXII:781441-781873 1.36e-01 100 chrIV:1354585-1354860 9.67e-01 100 chrXVI:781195-781635 4.52e-01 100 chrVII:311855-312203 9.92e-01 100 chrXII:84131-84486 5.03e-01 100 chrIV:210540-210980 1.91e-01 100 chrXI:430639-431079 5.80e-01 100 chrXVI:55896-56529 4.64e-04 17_[-2(5.51e-08)]_62 chrXV:228111-228583 5.37e-09 32_[+1(4.19e-09)]_17_[+2(2.16e-07)]_\ 4 chrVII:795901-796341 3.13e-02 100 chrVIII:5369-5809 5.02e-02 100 chrVIII:34898-35307 8.53e-01 100 chrVI:5249-5637 3.64e-01 100 chrVIII:386471-386860 9.40e-01 100 chrIII:30-564 1.86e-14 15_[+3(5.79e-18)]_13_[+3(4.18e-12)]_\ 14 chrXII:589086-589269 8.43e-01 100 chrXII:201766-202082 6.94e-01 100 chrIV:1449990-1450201 9.90e-01 100 chrIV:356696-356967 9.18e-01 100 chrXII:838894-839147 3.77e-01 100 chrVII:604790-605230 6.01e-01 100 chrI:494-787 3.12e-01 100 chrVII:774124-774618 8.60e-15 26_[+1(3.62e-12)]_16_[+2(1.23e-09)]_\ 11 chrVII:439577-439843 3.30e-01 100 chrXIII:59617-60057 4.68e-01 100 chrIV:130575-130978 3.25e-01 100 chrXI:556116-556556 5.18e-01 100 chrIX:69520-69729 5.93e-01 100 chrXII:650963-651285 8.11e-02 54_[+3(3.68e-05)]_17 chrIV:1302063-1302333 6.74e-01 100 chrIV:1305432-1305888 1.30e-11 18_[+1(1.70e-11)]_26_[+2(7.17e-08)]_\ 9 chrIV:992589-993055 1.26e-05 58_[+1(2.65e-08)]_16 chrXVI:736438-736878 8.91e-01 100 chrIV:339260-339700 3.59e-01 100 chrVII:480193-480691 7.32e-01 100 chrXIII:183734-184158 6.31e-11 12_[-2(4.41e-10)]_14_[-1(3.84e-08)]_\ 27 chrIII:162400-162939 5.87e-01 100 chrXII:150769-150922 9.94e-01 100 chrXII:951065-951505 9.00e-01 100 chrVII:117544-117984 8.17e-01 100 chrXV:797480-797920 9.16e-01 100 chrXV:505830-506270 2.94e-01 100 chrI:6694-7134 7.73e-01 100 chrXVI:876062-876219 7.71e-01 100 chrXV:797062-797222 5.68e-02 100 chrXIV:567892-568451 1.20e-06 64_[+2(1.07e-09)]_15 chrX:74556-74656 5.15e-01 100 chrII:236862-237228 1.99e-01 100 chrIV:720733-721173 9.26e-01 100 chrXI:46542-47011 2.63e-11 19_[-2(2.33e-10)]_15_[-1(1.81e-08)]_\ 19 chrXVI:733189-733318 2.87e-01 100 chrXI:158204-158607 6.37e-01 100 chrXV:110793-111248 1.70e-10 2_[-2(2.75e-10)]_15_[-1(1.60e-07)]_\ 36 chrXII:1051877-1052346 4.25e-16 20_[-2(8.89e-12)]_17_[-1(6.63e-12)]_\ 16 chrII:6536-6755 4.40e-02 100 chrIV:579041-579402 6.02e-01 100 chrVII:788313-788757 5.47e-01 100 chrXIII:259011-259482 5.77e-07 18_[-1(2.43e-11)]_56 chrIV:1461555-1462082 3.52e-05 36_[-1(4.19e-09)]_38 chrX:73377-73477 2.66e-01 100 chrX:541301-541401 1.24e-04 57_[+2(2.01e-07)]_22 chrVIII:7659-8099 6.75e-01 100 chrVII:440421-441261 3.30e-01 100 chrXV:444779-445219 2.81e-01 100 chrV:6146-6589 9.19e-09 22_[+3(4.53e-13)]_[+3(1.50e-05)]_20 chrX:227801-227901 6.36e-01 100 chrXV:287972-288410 1.25e-02 49_[+1(9.68e-05)]_25 chrXVI:188611-188938 1.31e-02 10_[+1(5.05e-05)]_64 chrVII:870033-870473 2.20e-01 100 chrXVI:718550-719060 4.97e-01 100 chrVIII:108024-108464 8.28e-01 100 chrXI:159221-159503 2.87e-01 100 chrXIV:104610-105158 1.55e-05 11_[+2(1.85e-09)]_68 chrXVI:880087-880563 4.25e-16 31_[-2(8.89e-12)]_17_[-1(6.63e-12)]_\ 5 chrIV:915946-916195 1.00e+00 100 chrXII:371450-371594 6.99e-01 100 chrV:53523-53962 5.92e-01 100 chrVII:1083671-1083897 4.62e-01 100 chrXVI:736760-737200 8.41e-01 100 chrXIII:362864-363312 4.17e-07 24_[+1(5.16e-07)]_15_[+2(2.16e-07)]_\ 14 chrIX:317993-318246 7.06e-01 100 chrXV:85081-85521 9.99e-01 100 chrXII:636736-637176 1.45e-01 100 chrIV:802554-803020 1.66e-10 4_[-2(6.93e-10)]_15_[-1(5.48e-08)]_\ 34 chrVII:706924-707382 5.16e-08 15_[-2(1.38e-07)]_15_[-1(7.72e-08)]_\ 23 chrVIII:115955-116390 2.05e-06 32_[-1(3.00e-10)]_42 chrXVI:435675-436193 5.16e-08 19_[-2(1.38e-07)]_15_[-1(7.72e-08)]_\ 19 chrXIII:551359-551802 7.34e-01 100 chrX:75333-75433 1.50e-04 29_[-3(1.88e-08)]_42 chrVII:611603-611713 7.37e-01 100 chrXIV:624453-624893 8.70e-01 100 chrXII:791843-792283 8.00e-02 100 chrIV:1075302-1075734 8.42e-08 14_[-2(1.41e-09)]_16_[-1(1.72e-05)]_\ 23 chrV:301563-302003 8.99e-01 100 chrVIII:554173-554321 8.39e-01 100 chrIV:588-863 7.06e-02 13_[+3(2.27e-05)]_58 chrI:72505-72666 7.75e-02 100 chrXII:975837-976256 5.29e-05 35_[-1(4.19e-09)]_39 chrIV:410180-410582 3.23e-08 46_[+1(3.62e-12)]_28 chrIV:1329299-1329739 4.28e-01 100 chrVIII:257995-258435 7.13e-01 100 chrXV:624127-624463 2.53e-01 100 chrXVI:581876-582366 2.03e-05 31_[+2(1.23e-09)]_48 chrVII:878588-879016 5.99e-03 38_[-1(4.18e-06)]_36 chrIV:453551-453991 9.10e-01 100 chrV:138431-139002 6.68e-06 39_[+2(2.74e-09)]_40 chrIV:1359241-1359804 4.47e-01 100 chrVI:101163-101676 4.99e-12 5_[+1(7.23e-09)]_46_[+2(1.07e-09)]_\ 2 chrIV:309398-309800 2.41e-01 100 chrVII:364033-364473 9.82e-01 100 chrXVI:281308-281917 6.07e-01 100 chrVII:534714-535259 1.07e-01 100 chrIV:1450897-1451241 6.53e-01 100 chrXV:978812-979137 1.37e-01 100 chrXIV:102520-102977 3.16e-09 16_[+1(4.19e-09)]_17_[+2(2.16e-07)]_\ 20 chrIX:27-281 2.79e-01 100 chrIV:340345-340584 4.41e-01 100 chrXII:1029744-1029989 1.40e-01 100 chrVII:365478-365715 8.12e-01 100 chrVII:727024-727464 2.80e-01 100 chrVIII:105506-105750 8.82e-01 100 chrIV:509873-510313 7.84e-01 100 chrXV:725192-725588 6.69e-01 100 chrIV:1016939-1017511 3.39e-06 42_[-2(9.28e-10)]_37 chrXV:93846-94320 9.01e-01 100 chrII:477012-477756 1.00e-01 100 chrII:169345-169591 9.66e-01 100 chrV:322444-322742 9.31e-01 100 chrII:606493-606697 7.66e-01 100 chrXI:325199-325639 8.03e-01 100 chrVIII:5245-5530 3.71e-01 100 chrVIII:562243-562641 3.92e-13 66_[-3(1.84e-17)]_5 chrM:58509-58802 3.26e-01 100 chrXII:150372-150812 7.69e-01 100 chrXI:108713-109091 9.64e-02 100 chrXIV:230380-230820 2.58e-01 100 chrVIII:237680-238157 2.53e-04 46_[-1(6.51e-08)]_28 chrII:6349-6605 3.38e-01 100 chrVI:157724-158203 1.01e-08 13_[-2(4.19e-08)]_35_[-1(6.51e-08)]_\ 5 chrVIII:148199-148639 6.25e-01 100 chrX:208385-208485 1.94e-03 2_[-2(7.37e-06)]_77 chrXVI:744082-744556 2.14e-08 13_[+1(1.99e-08)]_15_[+2(2.16e-07)]_\ 25 chrIV:355289-355739 2.80e-01 100 chrIII:305533-305973 5.95e-01 100 chrVII:146188-146628 9.10e-01 100 chrXII:795939-796110 8.68e-01 100 chrVII:287189-287673 5.02e-03 49_[-1(4.18e-06)]_25 chrIV:1300933-1301337 3.35e-01 100 chrII:520681-521121 8.46e-01 100 chrXII:437229-437669 3.66e-01 100 chrXVI:316231-316671 4.35e-01 100 chrIII:315558-316057 1.04e-01 100 chrIV:667816-668282 4.25e-16 18_[-2(8.89e-12)]_17_[-1(6.63e-12)]_\ 18 chrIV:619782-620233 4.83e-06 22_[-2(4.19e-08)]_16_[-1(2.94e-05)]_\ 15 chrXIV:282085-282525 7.86e-01 100 chrIV:221447-221732 7.65e-01 100 chrXIII:837681-838182 8.31e-02 45_[+1(9.03e-05)]_29 chrXII:964807-965247 4.52e-01 100 chrXVI:621607-622047 5.64e-02 75_[+2(6.09e-05)]_4 chrXIII:550656-551096 9.81e-01 100 chrVIII:411127-411640 4.37e-01 100 chrIV:212334-212774 8.92e-01 100 chrXV:161920-162360 7.62e-01 100 chrXII:231264-231704 7.58e-01 100 chrXV:670273-670713 9.77e-01 100 chrV:363674-363881 9.90e-01 100 chrVII:496998-497438 7.02e-01 100 chrVII:482556-483027 8.86e-01 100 chrII:414032-414239 9.42e-01 100 chrXII:628163-628688 5.23e-05 6_[+1(4.19e-09)]_68 chrVII:796736-797176 9.75e-01 100 chrXVI:404801-405554 2.95e-01 100 chrVII:779368-779870 7.63e-04 45_[+1(1.60e-07)]_29 chrXIV:783826-784190 1.90e-07 63_[-3(1.14e-10)]_8 chrIV:1095114-1095663 1.95e-04 42_[-2(4.19e-08)]_37 chrXIII:501054-501494 5.58e-01 100 chrVIII:385359-385620 4.98e-01 100 chrXII:712156-712596 8.00e-01 100 chrVII:541580-542162 8.54e-07 68_[+2(9.28e-10)]_11 chrXI:284414-284757 4.62e-01 100 chrV:99919-100436 4.20e-05 4_[+1(4.50e-07)]_15_[+2(9.61e-05)]_\ 34 chrXI:426949-427077 9.35e-01 100 chrVII:311001-311655 4.78e-01 100 chrVII:148625-148860 9.88e-01 100 chrIV:579342-580095 1.24e-01 100 chrIV:45888-46043 1.00e+00 100 chrXII:791800-791945 7.50e-01 100 chrV:269357-269797 1.54e-02 44_[-3(4.00e-05)]_27 chrXIV:585874-586487 8.88e-01 100 chrXII:366050-366507 6.99e-02 100 chrIX:210472-210947 4.25e-16 4_[+1(6.63e-12)]_17_[+2(8.89e-12)]_\ 32 chrXIV:561268-561708 6.83e-02 100 chrXII:793714-795216 5.11e-01 100 chrXIII:733181-733464 6.41e-01 100 chrV:443047-443519 1.35e-07 17_[-1(6.63e-12)]_57 chrXIII:56411-56851 9.84e-01 100 chrXII:818423-818820 2.14e-06 36_[+1(1.83e-06)]_15_[+2(3.07e-07)]_\ 2 chrXV:621329-621838 8.47e-01 100 chrX:121836-121936 8.16e-01 100 chrV:51999-52741 7.20e-01 100 chrXIII:739748-740188 7.43e-01 100 chrVIII:126699-126860 8.55e-01 100 chrV:303106-303374 9.94e-01 100 chrVII:148004-148276 6.66e-01 100 chrVI:137265-137768 6.59e-09 30_[-2(2.16e-07)]_17_[-1(5.23e-09)]_\ 6 chrXII:491401-491841 6.48e-03 34_[-1(5.97e-06)]_40 chrXIII:255908-256348 7.52e-01 100 chrXII:805471-805688 7.36e-01 100 chrV:313980-314420 7.25e-01 100 chrXV:160236-160676 1.86e-01 100 chrM:58758-59091 5.08e-01 100 chrIV:83346-83791 5.89e-11 28_[+1(2.65e-08)]_14_[+2(4.41e-10)]_\ 11 chrXVI:654146-654433 2.35e-01 100 chrIX:257355-257763 9.52e-01 100 chrIV:322932-323333 5.24e-01 100 chrXII:27-285 1.18e-01 100 chrV:135176-135717 1.60e-05 39_[-2(1.23e-09)]_40 chrXV:866552-866938 3.68e-01 100 chrXVI:819286-819786 2.02e-07 41_[+1(6.63e-12)]_33 chrXVI:860155-860604 2.34e-06 48_[+1(2.65e-08)]_26 chrXVI:188074-188184 6.37e-01 100 chrXII:363067-363507 8.35e-01 100 chrXVI:767086-767526 9.93e-01 100 chrXV:853987-854450 3.57e-14 29_[-2(9.90e-11)]_16_[-1(2.89e-11)]_\ 8 chrXVI:154052-154492 7.90e-01 100 chrXIII:626436-626883 1.00e+00 100 chrXI:286096-286536 9.20e-01 100 chrVII:876172-876700 1.02e-11 6_[+1(3.34e-09)]_16_[+2(1.23e-09)]_\ 31 chrI:180937-181488 7.85e-03 60_[+2(5.14e-06)]_19 chrXII:47591-48031 8.94e-01 100 chrX:414779-414879 1.02e-11 3_[+1(3.34e-09)]_16_[+2(1.23e-09)]_\ 34 chrV:441798-442645 9.40e-01 100 chrXV:779687-780839 4.94e-01 100 chrXIV:401328-401768 1.00e+00 100 chrVII:481893-482595 6.08e-02 100 chrXIII:764143-764583 7.73e-02 100 chrX:523798-523898 2.59e-11 19_[-2(1.49e-07)]_25_[-1(1.70e-11)]_\ 9 chrVIII:381625-382068 2.91e-02 67_[-1(1.58e-05)]_7 chrIII:30530-30868 9.93e-01 100 chrV:363810-364006 1.57e-01 100 chrXI:322404-322723 3.16e-02 100 chrVII:662855-663295 6.59e-01 100 chrXII:92329-92836 7.29e-07 14_[+1(4.68e-09)]_60 chrIV:980820-981274 3.38e-07 33_[-1(1.70e-11)]_41 chrXII:638453-638744 2.86e-01 100 chrVII:648920-649407 8.92e-01 100 chrVII:319583-320060 3.68e-07 8_[+1(4.50e-07)]_15_[+2(2.16e-07)]_\ 30 chrXIV:283022-283269 1.49e-01 100 chrIII:168869-169264 2.67e-01 100 chrXV:797226-797666 3.94e-01 100 chrXII:734623-735058 4.25e-16 10_[+1(6.63e-12)]_17_[+2(8.89e-12)]_\ 26 chrII:393300-393740 2.01e-01 100 chrVIII:452477-452969 8.84e-01 100 chrXII:953140-953352 7.15e-01 100 chrXIV:379357-379543 9.50e-01 100 chrVII:610483-610923 1.10e-01 28_[+1(8.12e-05)]_46 chrXI:25275-25715 8.91e-01 100 chrIV:652857-653297 9.04e-01 100 chrVII:600936-601376 3.86e-01 100 chrI:29-260 6.89e-10 22_[+3(3.97e-06)]_4_[+3(5.72e-11)]_\ 16 chrXII:370638-370897 1.90e-01 100 chrV:140453-140883 3.53e-01 100 chrXII:673755-674245 3.29e-01 100 chrXI:333403-333843 2.97e-01 100 chrIV:1147013-1147453 9.74e-01 100 chrVIII:388730-389211 8.88e-07 50_[-1(5.83e-09)]_24 chrIV:651790-652230 6.19e-01 100 chrXVI:172865-173625 9.82e-01 100 chrIV:251891-252331 6.79e-01 100 chrIV:915585-916025 4.50e-01 100 chrIV:435164-435604 6.13e-01 100 chrVII:823245-823711 6.82e-06 52_[+1(1.14e-09)]_22 chrV:435624-436057 8.98e-06 9_[-1(3.34e-09)]_65 chrVII:787086-787309 8.60e-01 100 chrII:82126-82566 3.92e-01 100 chrXIII:888690-889015 9.52e-01 100 chrXII:1064839-1065363 5.76e-14 1_[-3(4.10e-06)]_26_[-3(1.38e-16)]_\ 15 chrIV:1180839-1181279 8.89e-01 100 chrXII:11032-11558 1.88e-16 1_[+3(3.48e-12)]_1_[+3(2.00e-11)]_4_\ [+3(5.04e-20)]_7 chrVI:4437-5010 7.46e-14 36_[+3(1.84e-17)]_1_[+3(5.29e-08)]_\ 5 chrIV:914070-914334 9.79e-01 100 chrXV:277539-277979 9.02e-01 100 chrXV:464213-464702 7.29e-07 41_[+1(4.68e-09)]_33 chrX:349096-349196 3.57e-02 25_[-1(9.03e-05)]_49 chrXV:778945-779385 9.98e-01 100 chrVIII:382296-382827 5.43e-01 100 chrXVI:795059-795499 5.83e-01 100 chrII:255150-255416 1.93e-01 100 chrV:433245-433685 8.56e-01 100 chrX:390889-390989 5.69e-09 4_[-2(3.16e-08)]_16_[-1(6.51e-08)]_\ 33 chrXI:512-1060 1.15e-01 100 chrXV:87470-87847 6.44e-01 100 chrXI:53158-53598 9.88e-01 100 chrXIII:754401-754827 4.67e-02 5_[-3(2.27e-05)]_66 chrXVI:689329-689841 2.01e-10 28_[+1(1.95e-10)]_25_[+2(4.00e-07)] chrVII:544419-544856 1.31e-04 [-2(2.01e-07)]_79 chrIV:472970-473410 8.04e-01 100 chrII:347397-347865 4.35e-09 20_[+1(1.46e-09)]_27_[+2(5.46e-07)]_\ 6 chrIV:1489140-1489637 7.00e-01 100 chrXII:86736-87176 9.66e-01 100 chrXIV:88874-89594 7.67e-01 100 chrV:569714-569850 6.35e-01 100 chrIV:492283-492580 9.20e-01 100 chrII:567375-567815 8.14e-02 65_[-2(4.12e-05)]_14 chrVIII:358297-358808 1.43e-04 42_[-1(6.51e-08)]_32 chrXV:32-303 2.82e-08 35_[+3(2.42e-08)]_6_[+3(4.51e-11)]_\ 1 chrXII:922110-922552 1.98e-01 100 chrXII:855981-856448 2.83e-01 100 chrIV:358092-358434 8.17e-01 100 chrXV:22103-22543 2.79e-01 100 chrXV:127463-127903 1.01e-01 60_[-2(4.43e-05)]_19 chrIV:1355052-1355492 5.33e-01 100 chrXV:35422-35862 3.11e-01 100 chrIV:338303-338414 5.76e-01 100 chrIV:1201520-1202018 1.02e-11 29_[+1(3.34e-09)]_16_[+2(1.23e-09)]_\ 8 chrXII:1028914-1029354 8.48e-01 100 chrXII:47877-48317 4.72e-02 57_[+3(7.86e-05)]_14 chrXVI:406179-406566 1.50e-01 100 chrVII:610701-611141 7.21e-02 100 chrX:538335-538435 1.52e-04 47_[+1(6.32e-07)]_27 chrIV:322379-322732 5.85e-01 100 chrXVI:572015-572542 1.12e-10 39_[+1(3.84e-08)]_14_[+2(4.41e-10)] chrVIII:474515-474955 6.82e-01 100 chrIV:1237968-1238366 8.49e-01 100 chrV:551133-551550 2.90e-16 4_[-2(8.89e-12)]_17_[-1(4.45e-12)]_\ 32 chrXIV:96044-96503 2.37e-10 28_[-2(2.75e-10)]_15_[-1(1.37e-07)]_\ 10 chrV:401800-402240 2.35e-01 100 chrXI:458359-458900 1.14e-02 59_[+2(5.14e-06)]_20 chrVII:483-1037 5.90e-02 100 chrV:430974-431589 2.14e-01 100 chrVIII:451470-451605 3.03e-01 100 chrXII:11778-12059 2.60e-01 100 chrXIV:549374-549814 7.74e-01 100 chrI:698-980 3.54e-01 100 chrVII:806241-806409 9.47e-01 100 chrVII:663063-663503 5.59e-01 100 chrVIII:121461-121901 2.01e-01 100 chrIX:255775-256044 2.55e-01 100 chrXV:1027928-1028260 9.48e-01 100 chrXV:113570-114045 2.68e-06 43_[+1(3.00e-10)]_31 chrIII:797-1337 5.51e-01 100 chrVIII:556622-557228 9.62e-14 26_[-3(1.47e-17)]_9_[-3(1.00e-07)]_\ 7 chrIII:142564-142984 6.99e-05 22_[-1(2.65e-08)]_52 chrXV:326496-326709 9.17e-01 100 chrI:166046-166583 3.78e-14 1_[+1(4.06e-11)]_16_[+2(9.90e-11)]_\ 36 chrXIII:632682-633122 6.85e-01 100 chrIV:520739-521199 2.84e-04 51_[+1(1.26e-07)]_23 chrX:451794-451894 4.19e-01 100 chrXIV:415532-415906 8.38e-01 100 chrVII:883376-883740 7.36e-02 100 chrX:422675-422775 7.69e-09 23_[+1(6.51e-08)]_16_[+2(3.16e-08)]_\ 14 chrXVI:377981-378352 9.84e-01 100 chrXIII:294902-295342 9.50e-01 100 chrXIII:923395-923845 5.27e-01 100 chrXIII:747726-748193 5.52e-05 29_[-1(4.59e-08)]_45 chrVII:783850-784290 1.04e-01 60_[-3(5.12e-05)]_11 chrXIII:123611-124051 1.93e-01 100 chrXII:796941-797395 4.18e-01 100 chrIV:1525299-1525679 2.81e-07 14_[-3(1.05e-09)]_57 chrXIV:63108-63585 2.66e-01 100 chrIV:42-355 4.62e-07 55_[+3(3.61e-10)]_16 chrX:424304-424404 1.92e-06 26_[-1(1.14e-09)]_48 chrXII:592365-592888 4.01e-07 18_[-1(2.89e-11)]_56 chrXI:330554-330994 1.39e-01 100 chrX:204489-204589 5.67e-02 100 chrV:269294-269456 9.90e-01 100 chrXII:242491-242706 9.59e-01 100 chrVII:366075-366708 7.00e-01 100 chrIV:644999-645422 2.28e-10 3_[-2(6.93e-10)]_15_[-1(5.48e-08)]_\ 35 chrXII:448498-448944 1.56e-04 25_[-1(5.48e-08)]_49 chrXI:218431-218543 4.85e-01 100 chrV:354689-355303 6.73e-07 27_[+2(9.28e-10)]_52 chrIV:1443392-1443832 5.98e-01 100 chrI:73243-73571 7.86e-01 100 chrVII:110424-110913 4.17e-07 17_[-2(2.16e-07)]_15_[-1(5.16e-07)]_\ 21 chrV:207141-207622 4.71e-07 24_[+1(5.91e-07)]_15_[+2(2.16e-07)]_\ 14 chrXII:845534-845974 7.26e-01 100 chrXV:416015-416455 9.99e-01 100 chrXVI:303989-304312 3.22e-01 100 chrX:609393-609493 9.48e-01 100 chrVIII:34455-34880 6.77e-01 100 chrX:374211-374311 2.51e-06 72_[-2(2.74e-09)]_7 chrXI:313247-313685 2.16e-03 31_[-1(5.16e-07)]_43 chrII:266181-266685 9.96e-06 35_[+2(1.85e-09)]_44 chrXII:80606-81046 9.87e-01 100 chrV:61028-62171 4.79e-01 100 chrXV:167973-168446 2.13e-01 100 chrVII:482554-483027 8.86e-01 100 chrXV:412714-413154 1.00e+00 100 chrXVI:277831-278271 9.43e-01 100 chrVIII:386471-386869 9.40e-01 100 chrIII:292596-293005 9.29e-01 100 chrVII:561416-561958 4.15e-05 35_[-2(1.49e-07)]_44 chrXV:623279-623598 9.91e-01 100 chrIV:434002-434584 5.04e-12 31_[-2(1.85e-09)]_16_[-1(3.00e-10)]_\ 6 chrXIV:725974-726417 8.73e-06 47_[-1(1.14e-09)]_27 chrXV:709970-710407 1.70e-03 61_[+1(5.91e-07)]_13 chrXII:951476-951916 2.48e-01 100 chrVII:609478-609768 9.16e-01 100 chrII:392934-393374 4.60e-01 100 chrIV:221964-222336 6.64e-06 21_[-3(5.10e-09)]_50 chrII:59552-59992 8.00e-01 100 chrXVI:282282-282494 8.81e-01 100 chrIII:293895-294064 8.93e-01 100 chrIV:652652-653092 1.69e-01 100 chrIII:163468-163876 6.37e-02 100 chrXV:505105-505503 7.35e-06 42_[+3(1.86e-09)]_29 chrII:9355-9828 2.72e-06 40_[+1(1.14e-09)]_34 chrXV:254657-254935 8.55e-01 100 chrIV:556082-556522 1.32e-01 100 chrVII:405278-405751 4.69e-10 4_[+1(4.59e-08)]_15_[+2(2.74e-09)]_\ 34 chrX:153379-153479 6.71e-01 100 chrXII:898761-898946 8.10e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************