Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/BY4741--AFT2.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.03514
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/BY4741--AFT2.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.058045
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/BY4741--AFT2.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.070341
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.028901
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.067759
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/BY4741--AFT2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/background
Finished invoke:
  name: bg  status: 0  time: 0.010334
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 932.530438
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 66.7047
Invoking:
  centrimo -seqlen 430 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/BY4741--AFT2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.197808
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.301394
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/background -primary GGCCVAGTKGKTWRRGSG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/BY4741--AFT2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.726884
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/background -primary GGRNTCGAACCSVBGAYCTYM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/BY4741--AFT2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.777936
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/background -primary TWACAYCCRTACAYYHY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/BY4741--AFT2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.595372
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/background -primary CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/BY4741--AFT2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.376688
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/BY4741--AFT2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.296637
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/BY4741--AFT2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.350941
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/background -primary CACCGTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/BY4741--AFT2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.257388
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/background -primary ACTCWCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/BY4741--AFT2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.304673
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/background -primary AGACCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/BY4741--AFT2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.261355
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/background -primary ARAAAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/BY4741--AFT2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.604904
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/background -primary CACATYAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/BY4741--AFT2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.308612
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/background -primary CKTTGGGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/BY4741--AFT2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.296047
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/background -primary CKAGAATC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/BY4741--AFT2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.273963
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/background --motif GGCCVAGTKGKTWRRGSG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/BY4741--AFT2.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.228074
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/background --motif GGRNTCGAACCSVBGAYCTYM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/BY4741--AFT2.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.244067
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/background --motif TWACAYCCRTACAYYHY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/BY4741--AFT2.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.263262
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/background --motif CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/BY4741--AFT2.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.135813
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/BY4741--AFT2.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.137044
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/BY4741--AFT2.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.134096
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/background --motif CACCGTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/BY4741--AFT2.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.133452
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/background --motif ACTCWCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/BY4741--AFT2.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.142922
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/background --motif AGACCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/BY4741--AFT2.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.135996
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/background --motif ARAAAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/BY4741--AFT2.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.132492
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/background --motif CACATYAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/BY4741--AFT2.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.348206
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/background --motif CKTTGGGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/BY4741--AFT2.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.134341
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/background --motif CKAGAATC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/BY4741--AFT2.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.143879
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--AFT2/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.191685
Done