# DREME 4.12.0 # command: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ACE2/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ACE2/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ACE2/seqs-shuffled # positives: 712 from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ACE2/seqs-centered (Sat Jan 18 04:30:59 PST 2020) # negatives: 712 from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ACE2/seqs-shuffled (Sat Jan 18 04:30:59 PST 2020) # host: kali.stanford.edu # when: Sat Jan 18 04:46:33 PST 2020 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.320 C 0.186 G 0.182 T 0.312 MOTIF CCRTACA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CCRTACA TGTAYGG 100 12 5.2e-020 1.6e-015 # CCGTACA TGTACGG 53 3 1.7e-013 5.1e-009 # CCATACA TGTATGG 57 9 2.6e-010 7.9e-006 letter-probability matrix: alength= 4 w= 7 nsites= 120 E= 1.6e-015 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.541667 0.000000 0.458333 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGTGGTWA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST AGTGGTWA TWACCACT 57 1 6.6e-017 2.0e-012 # AGTGGTTA TAACCACT 44 1 6.8e-013 2.1e-008 # AGTGGTAA TTACCACT 14 0 5.7e-005 1.8e+000 letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 2.0e-012 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.241379 0.000000 0.000000 0.758621 1.000000 0.000000 0.000000 0.000000 MOTIF CAACTKGG DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CAACTKGG CCMAGTTG 50 1 9.8e-015 3.0e-010 # CAACTTGG CCAAGTTG 38 1 4.5e-011 1.4e-006 # CAACTGGG CCCAGTTG 12 0 2.3e-004 7.1e+000 letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 3.0e-010 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.240000 0.760000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GCKCTACC DREME-4 # Word RC Word Pos Neg P-value E-value # BEST GCKCTACC GGTAGMGC 43 0 5.9e-014 1.8e-009 # GCGCTACC GGTAGCGC 28 0 2.8e-009 8.7e-005 # GCTCTACC GGTAGAGC 15 0 2.8e-005 8.7e-001 letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 1.8e-009 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.651163 0.348837 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AAGGCRCC DREME-5 # Word RC Word Pos Neg P-value E-value # BEST AAGGCRCC GGYGCCTT 32 0 1.6e-010 5.0e-006 # AAGGCGCC GGCGCCTT 23 0 1.0e-007 3.0e-003 # AAGGCACC GGTGCCTT 9 0 1.9e-003 5.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 5.0e-006 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.281250 0.000000 0.718750 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GGYTCGA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST GGYTCGA TCGARCC 48 5 1.8e-010 5.6e-006 # GGTTCGA TCGAACC 44 4 4.3e-010 1.3e-005 # GGCTCGA TCGAGCC 14 1 4.6e-004 1.4e+001 letter-probability matrix: alength= 4 w= 7 nsites= 48 E= 5.6e-006 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.166667 0.000000 0.833333 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ATGGCAWC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST ATGGCAWC GWTGCCAT 33 1 1.4e-009 4.3e-005 # ATGGCATC GATGCCAT 15 0 2.8e-005 8.6e-001 # ATGGCAAC GTTGCCAT 18 1 3.5e-005 1.1e+000 letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 4.3e-005 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.545455 0.000000 0.000000 0.454545 0.000000 1.000000 0.000000 0.000000 MOTIF TGGCGYA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST TGGCGYA TRCGCCA 49 7 2.0e-009 6.0e-005 # TGGCGTA TACGCCA 23 2 8.4e-006 2.5e-001 # TGGCGCA TGCGCCA 26 5 8.2e-005 2.5e+000 letter-probability matrix: alength= 4 w= 7 nsites= 49 E= 6.0e-005 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.530612 0.000000 0.469388 1.000000 0.000000 0.000000 0.000000 MOTIF AAGARA DREME-9 # Word RC Word Pos Neg P-value E-value # BEST AAGARA TYTCTT 221 127 4.2e-009 1.3e-004 # AAGAAA TTTCTT 173 101 8.2e-007 2.5e-002 # AAGAGA TCTCTT 69 35 3.5e-004 1.1e+001 letter-probability matrix: alength= 4 w= 6 nsites= 268 E= 1.3e-004 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.738806 0.000000 0.261194 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACCCAVAC DREME-10 # Word RC Word Pos Neg P-value E-value # BEST ACCCAVAC GTBTGGGT 58 12 5.2e-009 1.6e-004 # ACCCAAAC GTTTGGGT 15 0 2.8e-005 8.5e-001 # ACCCAGAC GTCTGGGT 12 0 2.3e-004 7.0e+000 # ACCCACAC GTGTGGGT 35 12 4.5e-004 1.3e+001 letter-probability matrix: alength= 4 w= 8 nsites= 112 E= 1.6e-004 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.133929 0.758929 0.107143 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ACACTATA DREME-11 # Word RC Word Pos Neg P-value E-value # BEST ACACTATA TATAGTGT 27 1 8.6e-008 2.5e-003 # ACACTATA TATAGTGT 27 1 8.6e-008 2.5e-003 letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 2.5e-003 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GATTWGAA DREME-12 # Word RC Word Pos Neg P-value E-value # BEST GATTWGAA TTCWAATC 30 3 5.4e-007 1.6e-002 # GATTTGAA TTCAAATC 15 0 2.8e-005 8.4e-001 # GATTAGAA TTCTAATC 15 3 3.6e-003 1.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 1.6e-002 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GTGGTCTA DREME-13 # Word RC Word Pos Neg P-value E-value # BEST GTGGTCTA TAGACCAC 27 2 6.5e-007 1.9e-002 # GTGGTCTA TAGACCAC 27 2 6.5e-007 1.9e-002 letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 1.9e-002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 62.18 seconds