******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--YAP6/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrVII:788341-788698 1.0000 100 chrII:9432-9733 1.0000 100 chrVIII:126562-126946 1.0000 100 chrVI:167303-167640 1.0000 100 chrXII:793740-795202 1.0000 100 chrIX:138067-139311 1.0000 100 chrXVI:572096-572522 1.0000 100 chrX:73751-73851 1.0000 100 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1.0000 100 chrIV:520816-521154 1.0000 100 chrXIV:461931-462163 1.0000 100 chrVI:131252-131617 1.0000 100 chrVII:438602-438886 1.0000 100 chrX:453492-453592 1.0000 100 chrV:266249-266633 1.0000 100 chrXII:784196-784563 1.0000 100 chrVI:83968-84247 1.0000 100 chrIII:57296-57680 1.0000 100 chrXVI:608265-608571 1.0000 100 chrIV:579092-579327 1.0000 100 chrXIII:754438-754735 1.0000 100 chrV:362839-363223 1.0000 100 chrVII:401451-401614 1.0000 100 chrIX:99665-99987 1.0000 100 chrII:88069-88604 1.0000 100 chrVII:730979-731337 1.0000 100 chrXII:713182-713536 1.0000 100 chrXIII:732066-732371 1.0000 100 chrX:531673-531773 1.0000 100 chrXV:28651-29035 1.0000 100 chrIII:13814-14198 1.0000 100 chrXVI:586697-586848 1.0000 100 chrV:491077-491392 1.0000 100 chrVII:310538-310870 1.0000 100 chrV:267777-268161 1.0000 100 chrX:157489-157589 1.0000 100 chrIV:385128-385512 1.0000 100 chrXII:201913-202118 1.0000 100 chrXVI:828888-829438 1.0000 100 chrV:396858-397242 1.0000 100 chrXVI:377086-377470 1.0000 100 chrXIII:500290-500674 1.0000 100 chrXIII:290639-290978 1.0000 100 chrVIII:125943-126273 1.0000 100 chrVI:31187-31571 1.0000 100 chrXV:832424-832725 1.0000 100 chrXI:514069-514443 1.0000 100 chrXV:978822-979105 1.0000 100 chrXV:759057-759376 1.0000 100 chrXVI:795046-795430 1.0000 100 chrXIV:442851-443279 1.0000 100 chrXIV:716127-716583 1.0000 100 chrVII:556203-556587 1.0000 100 chrV:176938-177334 1.0000 100 chrXVI:775657-775993 1.0000 100 chrVII:328426-328856 1.0000 100 chrVII:400207-400591 1.0000 100 chrI:28563-28876 1.0000 100 chrVII:534042-534175 1.0000 100 chrII:391516-391835 1.0000 100 chrXIII:747793-748122 1.0000 100 chrXIV:631730-632058 1.0000 100 chrXIII:302769-303048 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--YAP6/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--YAP6/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--YAP6/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 571 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 57088 N= 571 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.296 C 0.204 G 0.204 T 0.296 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--YAP6/background): A 0.307 C 0.193 G 0.193 T 0.307 ******************************************************************************** ******************************************************************************** MOTIF DNSGCYYTAMCVACTVGGCCA MEME-1 width = 21 sites = 94 llr = 1582 E-value = 7.0e-311 ******************************************************************************** -------------------------------------------------------------------------------- Motif DNSGCYYTAMCVACTVGGCCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 32::11:373:4a::221::a pos.-specific C 1263934:17a3:9:22:a9: probability G 4247:21:1::2:::469::: matrix T 23:::5671::::1a2:::1: bits 2.4 * * 2.1 * * 1.9 * * * 1.7 * * ** **** Relative 1.4 ** * *** **** Entropy 1.2 *** ** *** **** (24.3 bits) 0.9 *** ** *** **** 0.7 *** ** ** *** ***** 0.5 *** ********* ***** 0.2 * ******************* 0.0 --------------------- Multilevel GTCGCTTTACCAACTGGGCCA consensus AAGC CCA A C AA sequence TG G CC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DNSGCYYTAMCVACTVGGCCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIV:104657-105058 - 5 3.26e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGA chrIII:295325-295754 - 2 3.26e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA T chrX:59014-59114 + 23 3.26e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCTTC chrXV:353934-354269 + 35 3.26e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCAGT chrVIII:115973-116346 + 43 3.26e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCTCT chrXV:113669-113961 - 44 3.26e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCTAA chrIV:434138-434446 + 67 3.26e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCTTC chrII:266230-266613 - 14 3.26e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCAGT chrXVI:689401-689780 - 32 4.13e-11 TTTCAAGTCT GTCGCCTTAACCACTCGGCCA TAGTGCCCAA chrV:288278-288662 + 77 4.13e-11 TTTCAAGTCT GTCGCCTTAACCACTCGGCCA TAG chrXIV:569769-570097 + 30 1.17e-10 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCACT chrXII:214777-215090 + 45 1.17e-10 TTGCAAGGGA AGCGCGCTACCAACTGCGCCA TGTGCCCTAA chrV:551198-551506 + 29 1.17e-10 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCTGT chrVII:794275-794575 - 49 1.17e-10 TTGCAAGGGA AGCGCGCTACCAACTGCGCCA TGTGCCCGCA chrXII:734643-734949 - 63 1.17e-10 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCAAA chrII:197348-197630 - 62 1.17e-10 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCTTG chrIV:667867-668216 + 62 1.17e-10 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCAAT chrVII:738962-739319 - 39 1.17e-10 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCTAT chrXII:1052001-1052248 + 43 1.17e-10 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCATG chrIX:210497-210863 - 42 1.17e-10 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCAGA chrXII:784196-784563 - 32 1.43e-10 AATAGCAGGC ATCGCCTTAACCACTCGGCCA CTGGGACGGT chrIV:1150738-1151078 + 56 1.43e-10 AATAGCAGGC ATCGCCTTAACCACTCGGCCA CTGGGACTGA chrXV:274499-274903 - 29 1.43e-10 ATAGCAGGGC ATCGCCTTAACCACTCGGCCA CTGGGACACG chrXII:167844-168186 + 33 2.47e-10 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCATA chrV:86407-86786 - 65 2.47e-10 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCAGA chrIV:437616-437958 - 42 2.47e-10 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCTTA chrII:226944-227279 - 21 2.47e-10 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCTCG chrXIII:259050-259398 + 38 2.47e-10 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCATA chrX:523895-523995 + 35 2.47e-10 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCTTT chrVII:774181-774541 - 45 7.60e-10 ATGCTAAGGG AGCGCGCTACCGACTACGCCA CACGCCCAAT chrX:197207-197307 + 67 7.60e-10 ATGCTAAGGG AGCGCGCTACCGACTACGCCA CACGCCCTAA chrVIII:146089-146447 + 69 7.60e-10 ATGCTAAGGG AGCGCGCTACCGACTACGCCA CACGCCCTGA chrXI:517806-518131 - 77 7.60e-10 GGG AGCGCGCTACCGACTACGCCA CACGCCCATA chrXVI:856748-857090 - 40 7.60e-10 ATGCTAAGGG AGCGCGCTACCGACTACGCCA CACGCCCGAA chrXII:656834-657153 + 36 7.60e-10 ATGCTAAGGG AGCGCGCTACCGACTACGCCA CACGCCCAAT chrIII:227790-228155 - 27 7.60e-10 ATTCGAGTCT CTCGCCTTAACCACTCGGCCA TAGTGCCATT chrIV:410221-410549 - 51 7.60e-10 ATGCTAAGGG AGCGCGCTACCGACTACGCCA CACGCCCAAT chrVII:730979-731337 - 36 2.94e-09 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCTTT chrVI:137370-137691 + 52 2.94e-09 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCAGT chrXIV:102566-102952 - 14 2.94e-09 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCTTA chrXI:74458-74806 - 49 2.94e-09 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCTAA chrXVI:810559-810815 - 46 2.94e-09 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCGCA chrX:617763-617863 - 45 2.94e-09 CCTAAATCTG ACGCCTTAAACCACTCGGCCA AACTCCCATT chrIII:127557-127887 - 51 2.94e-09 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCATT chrXV:228162-228508 - 53 2.94e-09 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCTAA chrXII:731973-732285 - 18 2.94e-09 CCTAAATCTG ACGCCTTAAACCACTCGGCCA AACTCCCATT chrIV:359422-359810 - 18 4.75e-09 TTAAAAGCCG AACGCTCTACCAACTGAGCTA ACAAGGATGA chrXV:438481-438877 - 21 4.75e-09 TTAAAAGCCG AACGCTCTACCAACTGAGCTA ACAAGGATGA chrXII:875235-875598 - 17 4.75e-09 TTAAAAGCCG AACGCTCTACCAACTGAGCTA ACAAGGATGA chrVII:115348-115695 - 24 4.75e-09 TTAAAAGCCG AACGCTCTACCAACTGAGCTA ACAAGGATGA chrV:435664-435968 + 31 6.67e-09 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTCT chrVII:185596-185921 + 51 6.67e-09 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTAT chrXIII:480527-480823 + 41 6.67e-09 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTAC chrIV:1352366-1352654 + 51 6.67e-09 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTAT chrXVI:581914-582244 - 40 6.67e-09 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTCT chrV:135298-135637 + 53 6.67e-09 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTTT chrVI:226588-226916 + 31 6.67e-09 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCATT chrVII:122112-122479 - 31 6.67e-09 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTAA chrIX:300127-300460 + 30 6.67e-09 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTAT chrVI:157827-158173 + 30 1.14e-08 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTTC chrVII:440547-440977 + 68 1.14e-08 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCATA chrXIII:352118-352454 - 51 1.14e-08 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTTA chrII:36242-36573 - 48 1.14e-08 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTTA chrVIII:237766-238099 + 30 1.14e-08 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTTA chrVIII:358342-358724 + 59 1.14e-08 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTTA chrX:233768-233868 - 67 2.98e-08 TTCGTAGCCA GACGCCGTGACCATTGGGCCA CGAGGAACAA chrXV:340180-340542 + 33 2.98e-08 TTCGTAGCCA GACGCCGTGACCATTGGGCCA CGAGGAACAG chrIV:619841-620183 + 52 2.98e-08 TTCGTAGCCA GACGCCGTGACCATTGGGCCA CGAGGAACAA chrV:492260-492577 + 29 2.98e-08 TTCGTAGCCA GACGCCGTGACCATTGGGCCA CGAGGAATAG chrXII:374194-374565 - 33 2.98e-08 TTCGTAGCCA GACGCCGTGACCATTGGGCCA CGAGGAACAA chrIV:519626-519910 - 32 3.55e-08 CTTAAGTCTG CCGCCTTAGACCACTCGGCCA ACCCTCCGTA chrXII:962891-963221 + 22 3.55e-08 CTTAAGTCTG CCGCCTTAGACCACTCGGCCA ACCCTCCGTC chrII:9432-9733 - 58 3.55e-08 CTTAAGTCTG CCGCCTTAGACCACTCGGCCA ACCCTCCACG chrXII:605188-605575 + 74 8.08e-08 CTATAAGCAC GAAGCTCTAACCACTGAGCTA CACGAG chrVII:857250-857628 + 75 8.72e-08 CTTGAATCAG GCGCCTTAGACCGCTCGGCCA AACAA chrXII:628219-628618 - 22 8.72e-08 CTTGAATCAG GCGCCTTAGACCGCTCGGCCA AACAACCACT chrXIII:372337-372609 + 68 1.01e-07 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCAGG chrVII:823328-823688 - 31 1.01e-07 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCACT chrXV:663695-664042 + 40 1.01e-07 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCACT chrXI:308033-308360 + 44 1.01e-07 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCACT chrXIII:420449-420816 + 52 1.01e-07 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCTGT chrX:422800-422900 - 41 1.09e-07 TTATGAGACT GACGCTCTTCCTACTGAGCTA CTGAAGCATA chrXV:976249-976621 - 43 1.09e-07 TTATGAGACT GACGCTCTTCCTACTGAGCTA CTGAAGCGCA chrX:390935-391035 + 20 1.09e-07 TTATGAGACT GACGCTCTTCCTACTGAGCTA CTGAAGCACT chrX:531673-531773 - 11 7.68e-07 GATGGCAACG TTGGATTTTACCACTAAACCA CTTGCGCTCA chrVII:845482-845867 - 32 7.68e-07 GATGGCAACG TTGGATTTTACCACTAAACCA CTTGCGCTTG chrXV:282005-282317 - 60 7.68e-07 GATGGCAACG TTGGATTTTACCACTAAACCA CTTGCGCGCT chrVI:162065-162377 - 64 7.68e-07 GATGGCAACG TTGGATTTTACCACTAAACCA CTTGCGCTTG chrIV:83399-83727 - 42 7.68e-07 GATGGCAACG TTGGATTTTACCACTAAACCA CTTGCGCTAA chrIII:142630-142931 + 14 7.68e-07 GATGGCAACG TTGGATTTTACCACTAAACCA CTTGCGCTAG chrXVI:572096-572522 - 17 7.68e-07 GATGGCAACG TTGGATTTTACCACTAAACCA CTTGCGCGAA chrXIII:759343-759489 + 29 1.13e-06 ACCGAACCGC CCAGCTCAACCATCTTCGCCA AGTAGCGGCA chrXVI:75452-75836 - 63 3.11e-06 GGGCCACAGT CAAGCAAATCCAACTCCGCCA CAAGACCGAG chrXV:989119-989397 + 39 3.72e-06 AGCGACAGGC ACACGCGAACCGGCTAGGCCA CCCAAACGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DNSGCYYTAMCVACTVGGCCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:104657-105058 3.3e-11 4_[-1]_75 chrIII:295325-295754 3.3e-11 1_[-1]_78 chrX:59014-59114 3.3e-11 22_[+1]_57 chrXV:353934-354269 3.3e-11 34_[+1]_45 chrVIII:115973-116346 3.3e-11 42_[+1]_37 chrXV:113669-113961 3.3e-11 43_[-1]_36 chrIV:434138-434446 3.3e-11 66_[+1]_13 chrII:266230-266613 3.3e-11 13_[-1]_66 chrXVI:689401-689780 4.1e-11 31_[-1]_48 chrV:288278-288662 4.1e-11 76_[+1]_3 chrXIV:569769-570097 1.2e-10 29_[+1]_50 chrXII:214777-215090 1.2e-10 44_[+1]_35 chrV:551198-551506 1.2e-10 28_[+1]_51 chrVII:794275-794575 1.2e-10 48_[-1]_31 chrXII:734643-734949 1.2e-10 62_[-1]_17 chrII:197348-197630 1.2e-10 61_[-1]_18 chrIV:667867-668216 1.2e-10 61_[+1]_18 chrVII:738962-739319 1.2e-10 38_[-1]_41 chrXII:1052001-1052248 1.2e-10 42_[+1]_37 chrIX:210497-210863 1.2e-10 41_[-1]_38 chrXII:784196-784563 1.4e-10 31_[-1]_48 chrIV:1150738-1151078 1.4e-10 55_[+1]_24 chrXV:274499-274903 1.4e-10 28_[-1]_51 chrXII:167844-168186 2.5e-10 32_[+1]_47 chrV:86407-86786 2.5e-10 64_[-1]_15 chrIV:437616-437958 2.5e-10 41_[-1]_38 chrII:226944-227279 2.5e-10 20_[-1]_59 chrXIII:259050-259398 2.5e-10 37_[+1]_42 chrX:523895-523995 2.5e-10 34_[+1]_45 chrVII:774181-774541 7.6e-10 44_[-1]_35 chrX:197207-197307 7.6e-10 66_[+1]_13 chrVIII:146089-146447 7.6e-10 68_[+1]_11 chrXI:517806-518131 7.6e-10 76_[-1]_3 chrXVI:856748-857090 7.6e-10 39_[-1]_40 chrXII:656834-657153 7.6e-10 35_[+1]_44 chrIII:227790-228155 7.6e-10 26_[-1]_53 chrIV:410221-410549 7.6e-10 50_[-1]_29 chrVII:730979-731337 2.9e-09 35_[-1]_44 chrVI:137370-137691 2.9e-09 51_[+1]_28 chrXIV:102566-102952 2.9e-09 13_[-1]_66 chrXI:74458-74806 2.9e-09 48_[-1]_31 chrXVI:810559-810815 2.9e-09 45_[-1]_34 chrX:617763-617863 2.9e-09 44_[-1]_35 chrIII:127557-127887 2.9e-09 50_[-1]_29 chrXV:228162-228508 2.9e-09 52_[-1]_27 chrXII:731973-732285 2.9e-09 17_[-1]_62 chrIV:359422-359810 4.8e-09 17_[-1]_62 chrXV:438481-438877 4.8e-09 20_[-1]_59 chrXII:875235-875598 4.8e-09 16_[-1]_63 chrVII:115348-115695 4.8e-09 23_[-1]_56 chrV:435664-435968 6.7e-09 30_[+1]_49 chrVII:185596-185921 6.7e-09 50_[+1]_29 chrXIII:480527-480823 6.7e-09 40_[+1]_39 chrIV:1352366-1352654 6.7e-09 50_[+1]_29 chrXVI:581914-582244 6.7e-09 39_[-1]_40 chrV:135298-135637 6.7e-09 52_[+1]_27 chrVI:226588-226916 6.7e-09 30_[+1]_49 chrVII:122112-122479 6.7e-09 30_[-1]_49 chrIX:300127-300460 6.7e-09 29_[+1]_50 chrVI:157827-158173 1.1e-08 29_[+1]_50 chrVII:440547-440977 1.1e-08 67_[+1]_12 chrXIII:352118-352454 1.1e-08 50_[-1]_29 chrII:36242-36573 1.1e-08 47_[-1]_32 chrVIII:237766-238099 1.1e-08 29_[+1]_50 chrVIII:358342-358724 1.1e-08 58_[+1]_21 chrX:233768-233868 3e-08 66_[-1]_13 chrXV:340180-340542 3e-08 32_[+1]_47 chrIV:619841-620183 3e-08 51_[+1]_28 chrV:492260-492577 3e-08 28_[+1]_51 chrXII:374194-374565 3e-08 32_[-1]_47 chrIV:519626-519910 3.6e-08 31_[-1]_48 chrXII:962891-963221 3.6e-08 21_[+1]_58 chrII:9432-9733 3.6e-08 57_[-1]_22 chrXII:605188-605575 8.1e-08 73_[+1]_6 chrVII:857250-857628 8.7e-08 74_[+1]_5 chrXII:628219-628618 8.7e-08 21_[-1]_58 chrXIII:372337-372609 1e-07 67_[+1]_12 chrVII:823328-823688 1e-07 30_[-1]_49 chrXV:663695-664042 1e-07 39_[+1]_40 chrXI:308033-308360 1e-07 43_[+1]_36 chrXIII:420449-420816 1e-07 51_[+1]_28 chrX:422800-422900 1.1e-07 40_[-1]_39 chrXV:976249-976621 1.1e-07 42_[-1]_37 chrX:390935-391035 1.1e-07 19_[+1]_60 chrX:531673-531773 7.7e-07 10_[-1]_69 chrVII:845482-845867 7.7e-07 31_[-1]_48 chrXV:282005-282317 7.7e-07 59_[-1]_20 chrVI:162065-162377 7.7e-07 63_[-1]_16 chrIV:83399-83727 7.7e-07 41_[-1]_38 chrIII:142630-142931 7.7e-07 13_[+1]_66 chrXVI:572096-572522 7.7e-07 16_[-1]_63 chrXIII:759343-759489 1.1e-06 28_[+1]_51 chrXVI:75452-75836 3.1e-06 62_[-1]_17 chrXV:989119-989397 3.7e-06 38_[+1]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DNSGCYYTAMCVACTVGGCCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DNSGCYYTAMCVACTVGGCCA width=21 seqs=94 chrXIV:104657-105058 ( 5) GGCGCCTTACCAACTTGGCCA 1 chrIII:295325-295754 ( 2) GGCGCCTTACCAACTTGGCCA 1 chrX:59014-59114 ( 23) GGCGCCTTACCAACTTGGCCA 1 chrXV:353934-354269 ( 35) GGCGCCTTACCAACTTGGCCA 1 chrVIII:115973-116346 ( 43) GGCGCCTTACCAACTTGGCCA 1 chrXV:113669-113961 ( 44) GGCGCCTTACCAACTTGGCCA 1 chrIV:434138-434446 ( 67) GGCGCCTTACCAACTTGGCCA 1 chrII:266230-266613 ( 14) GGCGCCTTACCAACTTGGCCA 1 chrXVI:689401-689780 ( 32) GTCGCCTTAACCACTCGGCCA 1 chrV:288278-288662 ( 77) GTCGCCTTAACCACTCGGCCA 1 chrXIV:569769-570097 ( 30) GTGCCTTAACCAACTGGGCCA 1 chrXII:214777-215090 ( 45) AGCGCGCTACCAACTGCGCCA 1 chrV:551198-551506 ( 29) GTGCCTTAACCAACTGGGCCA 1 chrVII:794275-794575 ( 49) AGCGCGCTACCAACTGCGCCA 1 chrXII:734643-734949 ( 63) GTGCCTTAACCAACTGGGCCA 1 chrII:197348-197630 ( 62) GTGCCTTAACCAACTGGGCCA 1 chrIV:667867-668216 ( 62) GTGCCTTAACCAACTGGGCCA 1 chrVII:738962-739319 ( 39) GTGCCTTAACCAACTGGGCCA 1 chrXII:1052001-1052248 ( 43) GTGCCTTAACCAACTGGGCCA 1 chrIX:210497-210863 ( 42) GTGCCTTAACCAACTGGGCCA 1 chrXII:784196-784563 ( 32) ATCGCCTTAACCACTCGGCCA 1 chrIV:1150738-1151078 ( 56) ATCGCCTTAACCACTCGGCCA 1 chrXV:274499-274903 ( 29) ATCGCCTTAACCACTCGGCCA 1 chrXII:167844-168186 ( 33) TTCGCCTTAACCACTCGGCCA 1 chrV:86407-86786 ( 65) TTCGCCTTAACCACTCGGCCA 1 chrIV:437616-437958 ( 42) TTCGCCTTAACCACTCGGCCA 1 chrII:226944-227279 ( 21) TTCGCCTTAACCACTCGGCCA 1 chrXIII:259050-259398 ( 38) TTCGCCTTAACCACTCGGCCA 1 chrX:523895-523995 ( 35) TTCGCCTTAACCACTCGGCCA 1 chrVII:774181-774541 ( 45) AGCGCGCTACCGACTACGCCA 1 chrX:197207-197307 ( 67) AGCGCGCTACCGACTACGCCA 1 chrVIII:146089-146447 ( 69) AGCGCGCTACCGACTACGCCA 1 chrXI:517806-518131 ( 77) AGCGCGCTACCGACTACGCCA 1 chrXVI:856748-857090 ( 40) AGCGCGCTACCGACTACGCCA 1 chrXII:656834-657153 ( 36) AGCGCGCTACCGACTACGCCA 1 chrIII:227790-228155 ( 27) CTCGCCTTAACCACTCGGCCA 1 chrIV:410221-410549 ( 51) AGCGCGCTACCGACTACGCCA 1 chrVII:730979-731337 ( 36) ACGCCTTAACCAACTTGGCCA 1 chrVI:137370-137691 ( 52) ACGCCTTAACCAACTTGGCCA 1 chrXIV:102566-102952 ( 14) ACGCCTTAACCAACTTGGCCA 1 chrXI:74458-74806 ( 49) ACGCCTTAACCAACTTGGCCA 1 chrXVI:810559-810815 ( 46) ACGCCTTAACCAACTTGGCCA 1 chrX:617763-617863 ( 45) ACGCCTTAAACCACTCGGCCA 1 chrIII:127557-127887 ( 51) ACGCCTTAACCAACTTGGCCA 1 chrXV:228162-228508 ( 53) ACGCCTTAACCAACTTGGCCA 1 chrXII:731973-732285 ( 18) ACGCCTTAAACCACTCGGCCA 1 chrIV:359422-359810 ( 18) AACGCTCTACCAACTGAGCTA 1 chrXV:438481-438877 ( 21) AACGCTCTACCAACTGAGCTA 1 chrXII:875235-875598 ( 17) AACGCTCTACCAACTGAGCTA 1 chrVII:115348-115695 ( 24) AACGCTCTACCAACTGAGCTA 1 chrV:435664-435968 ( 31) TACGCGCTACCGATTGCGCCA 1 chrVII:185596-185921 ( 51) TACGCGCTACCGATTGCGCCA 1 chrXIII:480527-480823 ( 41) TACGCGCTACCGATTGCGCCA 1 chrIV:1352366-1352654 ( 51) TACGCGCTACCGATTGCGCCA 1 chrXVI:581914-582244 ( 40) TACGCGCTACCGATTGCGCCA 1 chrV:135298-135637 ( 53) TACGCGCTACCGATTGCGCCA 1 chrVI:226588-226916 ( 31) TACGCGCTACCGATTGCGCCA 1 chrVII:122112-122479 ( 31) TACGCGCTACCGATTGCGCCA 1 chrIX:300127-300460 ( 30) TACGCGCTACCGATTGCGCCA 1 chrVI:157827-158173 ( 30) GGCGCTCTCCCAACTGAGCTA 1 chrVII:440547-440977 ( 68) GGCGCTCTCCCAACTGAGCTA 1 chrXIII:352118-352454 ( 51) GGCGCTCTCCCAACTGAGCTA 1 chrII:36242-36573 ( 48) GGCGCTCTCCCAACTGAGCTA 1 chrVIII:237766-238099 ( 30) GGCGCTCTCCCAACTGAGCTA 1 chrVIII:358342-358724 ( 59) GGCGCTCTCCCAACTGAGCTA 1 chrX:233768-233868 ( 67) GACGCCGTGACCATTGGGCCA 1 chrXV:340180-340542 ( 33) GACGCCGTGACCATTGGGCCA 1 chrIV:619841-620183 ( 52) GACGCCGTGACCATTGGGCCA 1 chrV:492260-492577 ( 29) GACGCCGTGACCATTGGGCCA 1 chrXII:374194-374565 ( 33) GACGCCGTGACCATTGGGCCA 1 chrIV:519626-519910 ( 32) CCGCCTTAGACCACTCGGCCA 1 chrXII:962891-963221 ( 22) CCGCCTTAGACCACTCGGCCA 1 chrII:9432-9733 ( 58) CCGCCTTAGACCACTCGGCCA 1 chrXII:605188-605575 ( 74) GAAGCTCTAACCACTGAGCTA 1 chrVII:857250-857628 ( 75) GCGCCTTAGACCGCTCGGCCA 1 chrXII:628219-628618 ( 22) GCGCCTTAGACCGCTCGGCCA 1 chrXIII:372337-372609 ( 68) ATGCCATAACCGACTAGACCA 1 chrVII:823328-823688 ( 31) ATGCCATAACCGACTAGACCA 1 chrXV:663695-664042 ( 40) ATGCCATAACCGACTAGACCA 1 chrXI:308033-308360 ( 44) ATGCCATAACCGACTAGACCA 1 chrXIII:420449-420816 ( 52) ATGCCATAACCGACTAGACCA 1 chrX:422800-422900 ( 41) GACGCTCTTCCTACTGAGCTA 1 chrXV:976249-976621 ( 43) GACGCTCTTCCTACTGAGCTA 1 chrX:390935-391035 ( 20) GACGCTCTTCCTACTGAGCTA 1 chrX:531673-531773 ( 11) TTGGATTTTACCACTAAACCA 1 chrVII:845482-845867 ( 32) TTGGATTTTACCACTAAACCA 1 chrXV:282005-282317 ( 60) TTGGATTTTACCACTAAACCA 1 chrVI:162065-162377 ( 64) TTGGATTTTACCACTAAACCA 1 chrIV:83399-83727 ( 42) TTGGATTTTACCACTAAACCA 1 chrIII:142630-142931 ( 14) TTGGATTTTACCACTAAACCA 1 chrXVI:572096-572522 ( 17) TTGGATTTTACCACTAAACCA 1 chrXIII:759343-759489 ( 29) CCAGCTCAACCATCTTCGCCA 1 chrXVI:75452-75836 ( 63) CAAGCAAATCCAACTCCGCCA 1 chrXV:989119-989397 ( 39) ACACGCGAACCGGCTAGGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DNSGCYYTAMCVACTVGGCCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 45668 bayes= 10.496 E= 7.0e-311 10 -160 95 -39 -33 -18 34 15 -285 163 91 -1320 -1320 63 186 -1320 -204 225 -418 -1320 -227 52 -1 61 -485 86 -160 90 6 -1320 -1320 115 121 -160 -86 -139 15 177 -1320 -1320 -1320 237 -1320 -1320 36 82 28 -327 164 -1320 -259 -485 -1320 214 -1320 -104 -1320 -1320 -1320 170 -53 14 107 -85 -46 14 155 -1320 -127 -1320 218 -1320 -1320 237 -1320 -1320 -1320 214 -1320 -104 170 -1320 -1320 -1320 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DNSGCYYTAMCVACTVGGCCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 94 E= 7.0e-311 0.329787 0.063830 0.372340 0.234043 0.244681 0.170213 0.244681 0.340426 0.042553 0.595745 0.361702 0.000000 0.000000 0.297872 0.702128 0.000000 0.074468 0.914894 0.010638 0.000000 0.063830 0.276596 0.191489 0.468085 0.010638 0.351064 0.063830 0.574468 0.319149 0.000000 0.000000 0.680851 0.712766 0.063830 0.106383 0.117021 0.340426 0.659574 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.393617 0.340426 0.234043 0.031915 0.957447 0.000000 0.031915 0.010638 0.000000 0.851064 0.000000 0.148936 0.000000 0.000000 0.000000 1.000000 0.212766 0.212766 0.404255 0.170213 0.223404 0.212766 0.563830 0.000000 0.127660 0.000000 0.872340 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.851064 0.000000 0.148936 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DNSGCYYTAMCVACTVGGCCA MEME-1 regular expression -------------------------------------------------------------------------------- [GAT][TAG][CG][GC]C[TC][TC][TA]A[CA]C[ACG]ACT[GAC][GAC]GCCA -------------------------------------------------------------------------------- Time 318.77 secs. ******************************************************************************** ******************************************************************************** MOTIF SGGRVTCGAACCSVKGAYCTYHHSRTTAM MEME-2 width = 29 sites = 58 llr = 1244 E-value = 1.8e-257 ******************************************************************************** -------------------------------------------------------------------------------- Motif SGGRVTCGAACCSVKGAYCTYHHSRTTAM MEME-2 Description -------------------------------------------------------------------------------- Simplified A :2:54:::aa:::312711:132:51173 pos.-specific C 4:::2:8:::a8631:168344442:::4 probability G 68a53::a::::43381::::11631231 matrix T ::::2a2::::2:15:1327523::8712 bits 2.4 * * 2.1 * * * 1.9 * * * 1.7 * ****** Relative 1.4 ** ******* * Entropy 1.2 *** ******** * * * (30.9 bits) 0.9 **** ******** * *** * * 0.7 **** ******** * **** * *** 0.5 **** ******** ****** ***** 0.2 **** ************************ 0.0 ----------------------------- Multilevel GGGAATCGAACCCCTGACCTTCCGATTAC consensus C GG GAGA T CCATCG GA sequence G TA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRVTCGAACCSVKGAYCTYHHSRTTAM MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrVII:185596-185921 + 16 4.70e-13 AGCCCTGTAG GGGGCTCGAACCCCTAACCTTATGATTAA GAGTCATACG chrXIII:480527-480823 + 6 4.70e-13 TGTAG GGGGCTCGAACCCCTAACCTTATGATTAA GAGTCATACG chrIV:1352366-1352654 + 16 4.70e-13 AGCCCTGTAG GGGGCTCGAACCCCTAACCTTATGATTAA GAGTCATACG chrXVI:581914-582244 - 67 4.70e-13 TGTAG GGGGCTCGAACCCCTAACCTTATGATTAA GAGTCATACG chrV:135298-135637 + 18 4.70e-13 AGCCCTGTAG GGGGCTCGAACCCCTAACCTTATGATTAA GAGTCATACG chrVII:122112-122479 - 58 4.70e-13 AGCCCTGTAG GGGGCTCGAACCCCTAACCTTATGATTAA GAGTCATACG chrXII:214777-215090 + 10 1.17e-12 GGACGCAAC CGGAATCGAACCGATGACCTCTTCCTTGC AAGGGAAGCG chrVII:736167-736540 - 70 1.55e-12 AT GGGGGTCGAACCCATAATCTTCTGATTAG AAGTCAGACG chrVII:828533-828967 + 33 1.55e-12 CACTCACGAT GGGGGTCGAACCCATAATCTTCTGATTAG AAGTCAGACG chrII:405716-406152 - 27 1.55e-12 CACTCACGAT GGGGGTCGAACCCATAATCTTCTGATTAG AAGTCAGACG chrX:374266-374366 + 71 1.55e-12 CACTCACGAT GGGGGTCGAACCCATAATCTTCTGATTAG A chrIV:568726-569124 - 40 1.55e-12 CACTCACGAT GGGGGTCGAACCCATAATCTTCTGATTAG AAGTCAGACG chrXI:162341-162712 + 21 1.55e-12 CACTCACGAT GGGGGTCGAACCCATAATCTTCTGATTAG AAGTCAGACG chrIV:667867-668216 + 26 2.36e-12 TGGTCTCTAG CGGGATCGAACCGCTGATCCCCGCGTTAT TAGCACGGTG chrVII:738962-739319 - 67 2.36e-12 TCTAG CGGGATCGAACCGCTGATCCCCGCGTTAT TAGCACGGTG chrXII:1052001-1052248 + 7 2.36e-12 CTCTAG CGGGATCGAACCGCTGATCCCCGCGTTAT TAGCACGGTG chrIX:210497-210863 - 70 2.36e-12 AG CGGGATCGAACCGCTGATCCCCGCGTTAT TAGCACGGTG chrVII:328426-328856 - 25 8.67e-12 CTCCGATACG GGGAGTCGAACCCCGGTCTCCACGGTGAA AGCGTGATGT chrV:176938-177334 - 46 8.67e-12 CTCCGATACG GGGAGTCGAACCCCGGTCTCCACGGTGAA AGCGTGATGT chrVII:401451-401614 + 55 8.67e-12 CTCCGATACG GGGAGTCGAACCCCGGTCTCCACGGTGAA AGCGTGATGT chrV:354771-355146 - 59 8.67e-12 CTCCGATACG GGGAGTCGAACCCCGGTCTCCACGGTGAA AGCGTGATGT chrV:487228-487535 + 10 8.67e-12 TCCGATACG GGGAGTCGAACCCCGGTCTCCACGGTGAA AGCGTGATGT chrII:645007-645370 - 62 8.67e-12 CTCCGATACG GGGAGTCGAACCCCGGTCTCCACGGTGAA AGCGTGATGT chrXI:140800-141244 + 56 8.67e-12 CTCCGATACG GGGAGTCGAACCCCGGTCTCCACGGTGAA AGCGTGATGT chrXIV:104657-105058 - 32 1.58e-11 TGCTTCCAAT CGGATTTGAACCGATGATCTCCACATTAC TAGTGTGGCG chrIII:295325-295754 - 29 1.58e-11 TGCTTCCAAT CGGATTTGAACCGATGATCTCCACATTAC TAGTGTGGCG chrVIII:115973-116346 + 8 1.58e-11 TTCCAAT CGGATTTGAACCGATGATCTCCACATTAC TAGTGTGGCG chrXV:113669-113961 - 71 1.58e-11 T CGGATTTGAACCGATGATCTCCACATTAC TAGTGTGGCG chrIV:434138-434446 + 32 1.58e-11 TGCTTCCAAT CGGATTTGAACCGATGATCTCCACATTAC TAGTGTGGCG chrII:266230-266613 - 41 1.58e-11 TGCTTCCAAT CGGATTTGAACCGATGATCTCCACATTAC TAGTGTGGCG chrVII:774181-774541 - 72 1.99e-11 . CGGAATCGAACCGGAGACCTCTCCCATGC TAAGGGAGCG chrX:197207-197307 + 32 1.99e-11 TGGACGAGTC CGGAATCGAACCGGAGACCTCTCCCATGC TAAGGGAGCG chrVIII:146089-146447 + 34 1.99e-11 TGGACGAGTC CGGAATCGAACCGGAGACCTCTCCCATGC TAAGGGAGCG chrXVI:856748-857090 - 67 1.99e-11 GAGTC CGGAATCGAACCGGAGACCTCTCCCATGC TAAGGGAGCG chrXII:656834-657153 + 1 1.99e-11 . CGGAATCGAACCGGAGACCTCTCCCATGC TAAGGGAGCG chrX:531673-531773 - 36 3.49e-11 TGCGCAAGCC CGGAATCGAACCGGGGGCCCAACGATGGC AACGTTGGAT chrVII:845482-845867 - 57 3.49e-11 TGCGCAAGCC CGGAATCGAACCGGGGGCCCAACGATGGC AACGTTGGAT chrIV:83399-83727 - 67 3.49e-11 AAGCC CGGAATCGAACCGGGGGCCCAACGATGGC AACGTTGGAT chrXVI:572096-572522 - 42 3.49e-11 TGCGCAAGCC CGGAATCGAACCGGGGGCCCAACGATGGC AACGTTGGAT chrIV:359422-359810 - 68 1.21e-10 ATAG GGGGCTCGAACCCCTGACATTTCGGTATC CTTGCTTAAG chrXV:438481-438877 - 71 1.21e-10 G GGGGCTCGAACCCCTGACATTTCGGTATC CTTGCTTAAG chrXII:875235-875598 - 67 1.21e-10 CATAG GGGGCTCGAACCCCTGACATTTCGGTATC CTTGCTTAAG chrXIV:631730-632058 + 12 1.47e-10 GGGGCGAGCC GGGACTCGAACCCGGGACCTCCCGCACCC TAAGCGAGAA chrX:538422-538522 - 67 1.62e-10 CGTAC GGGACTCGAACCCGCAGTCTTCTCCTTAG GAGGGAGACG chrX:422800-422900 - 68 4.05e-10 AGGG GAGGTTCGAACTCTCGACCTTCAGATTAT GAGACTGACG chrXV:976249-976621 - 70 4.05e-10 GG GAGGTTCGAACTCTCGACCTTCAGATTAT GAGACTGACG chrVII:440547-440977 + 14 4.42e-10 TGCGAATTCT GTGGATCGAACACAGGACCTCCAGATAAC TTGACCGAAG chrVIII:358342-358724 + 5 4.42e-10 TTCT GTGGATCGAACACAGGACCTCCAGATAAC TTGACCGAAG chrVII:730979-731337 - 64 8.68e-10 ACCCCAGT GAGGGTTGAACTCACGATCTTGCGATTAA CAGTCGCACG chrVI:137370-137691 + 16 8.68e-10 CGACCCCAGT GAGGGTTGAACTCACGATCTTGCGATTAA CAGTCGCACG chrXIV:102566-102952 - 42 8.68e-10 CGACCCCAGT GAGGGTTGAACTCACGATCTTGCGATTAA CAGTCGCACG chrIV:1075334-1075709 + 11 1.64e-09 TGTTCCAACC GAGGATCGAACTCGGGACCTTTGCCGTGT GAAGGCAACG chrVIII:475585-475933 + 7 1.64e-09 CCAACC GAGGATCGAACTCGGGACCTTTGCCGTGT GAAGGCAACG chrXVI:55915-56439 + 52 6.79e-09 TGAAACGGAC AGGAATTGAACCTGCAACCCTTCGATTGC AATCTTATTC chrXI:379662-379859 - 5 1.13e-08 TGATTTCGCC CAGGATCGAACTGGGGACGTTCTGCGTGT TAAG chrXIV:442851-443279 - 66 1.04e-07 TGCTAA GAGATTCGAACTCTTGCATCTTACGATAC CTGAGTATTC chrXI:458443-458794 - 64 1.04e-07 GTTGCTAA GAGATTCGAACTCTTGCATCTTACGATAC CTGAGTATTC chrXII:710676-710852 + 12 5.03e-06 ACCAACAAGC AGGAATCACACCCACGCATCTCATTTTGC GTTACTATGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRVTCGAACCSVKGAYCTYHHSRTTAM MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:185596-185921 4.7e-13 15_[+2]_56 chrXIII:480527-480823 4.7e-13 5_[+2]_66 chrIV:1352366-1352654 4.7e-13 15_[+2]_56 chrXVI:581914-582244 4.7e-13 66_[-2]_5 chrV:135298-135637 4.7e-13 17_[+2]_54 chrVII:122112-122479 4.7e-13 57_[-2]_14 chrXII:214777-215090 1.2e-12 9_[+2]_62 chrVII:736167-736540 1.6e-12 69_[-2]_2 chrVII:828533-828967 1.6e-12 32_[+2]_39 chrII:405716-406152 1.6e-12 26_[-2]_45 chrX:374266-374366 1.6e-12 70_[+2]_1 chrIV:568726-569124 1.6e-12 39_[-2]_32 chrXI:162341-162712 1.6e-12 20_[+2]_51 chrIV:667867-668216 2.4e-12 25_[+2]_46 chrVII:738962-739319 2.4e-12 66_[-2]_5 chrXII:1052001-1052248 2.4e-12 6_[+2]_65 chrIX:210497-210863 2.4e-12 69_[-2]_2 chrVII:328426-328856 8.7e-12 24_[-2]_47 chrV:176938-177334 8.7e-12 45_[-2]_26 chrVII:401451-401614 8.7e-12 54_[+2]_17 chrV:354771-355146 8.7e-12 58_[-2]_13 chrV:487228-487535 8.7e-12 9_[+2]_62 chrII:645007-645370 8.7e-12 61_[-2]_10 chrXI:140800-141244 8.7e-12 55_[+2]_16 chrXIV:104657-105058 1.6e-11 31_[-2]_40 chrIII:295325-295754 1.6e-11 28_[-2]_43 chrVIII:115973-116346 1.6e-11 7_[+2]_64 chrXV:113669-113961 1.6e-11 70_[-2]_1 chrIV:434138-434446 1.6e-11 31_[+2]_40 chrII:266230-266613 1.6e-11 40_[-2]_31 chrVII:774181-774541 2e-11 71_[-2] chrX:197207-197307 2e-11 31_[+2]_40 chrVIII:146089-146447 2e-11 33_[+2]_38 chrXVI:856748-857090 2e-11 66_[-2]_5 chrXII:656834-657153 2e-11 [+2]_71 chrX:531673-531773 3.5e-11 35_[-2]_36 chrVII:845482-845867 3.5e-11 56_[-2]_15 chrIV:83399-83727 3.5e-11 66_[-2]_5 chrXVI:572096-572522 3.5e-11 41_[-2]_30 chrIV:359422-359810 1.2e-10 67_[-2]_4 chrXV:438481-438877 1.2e-10 70_[-2]_1 chrXII:875235-875598 1.2e-10 66_[-2]_5 chrXIV:631730-632058 1.5e-10 11_[+2]_60 chrX:538422-538522 1.6e-10 66_[-2]_5 chrX:422800-422900 4e-10 67_[-2]_4 chrXV:976249-976621 4e-10 69_[-2]_2 chrVII:440547-440977 4.4e-10 13_[+2]_58 chrVIII:358342-358724 4.4e-10 4_[+2]_67 chrVII:730979-731337 8.7e-10 63_[-2]_8 chrVI:137370-137691 8.7e-10 15_[+2]_56 chrXIV:102566-102952 8.7e-10 41_[-2]_30 chrIV:1075334-1075709 1.6e-09 10_[+2]_61 chrVIII:475585-475933 1.6e-09 6_[+2]_65 chrXVI:55915-56439 6.8e-09 51_[+2]_20 chrXI:379662-379859 1.1e-08 4_[-2]_67 chrXIV:442851-443279 1e-07 65_[-2]_6 chrXI:458443-458794 1e-07 63_[-2]_8 chrXII:710676-710852 5e-06 11_[+2]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRVTCGAACCSVKGAYCTYHHSRTTAM MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SGGRVTCGAACCSVKGAYCTYHHSRTTAM width=29 seqs=58 chrVII:185596-185921 ( 16) GGGGCTCGAACCCCTAACCTTATGATTAA 1 chrXIII:480527-480823 ( 6) GGGGCTCGAACCCCTAACCTTATGATTAA 1 chrIV:1352366-1352654 ( 16) GGGGCTCGAACCCCTAACCTTATGATTAA 1 chrXVI:581914-582244 ( 67) GGGGCTCGAACCCCTAACCTTATGATTAA 1 chrV:135298-135637 ( 18) GGGGCTCGAACCCCTAACCTTATGATTAA 1 chrVII:122112-122479 ( 58) GGGGCTCGAACCCCTAACCTTATGATTAA 1 chrXII:214777-215090 ( 10) CGGAATCGAACCGATGACCTCTTCCTTGC 1 chrVII:736167-736540 ( 70) GGGGGTCGAACCCATAATCTTCTGATTAG 1 chrVII:828533-828967 ( 33) GGGGGTCGAACCCATAATCTTCTGATTAG 1 chrII:405716-406152 ( 27) GGGGGTCGAACCCATAATCTTCTGATTAG 1 chrX:374266-374366 ( 71) GGGGGTCGAACCCATAATCTTCTGATTAG 1 chrIV:568726-569124 ( 40) GGGGGTCGAACCCATAATCTTCTGATTAG 1 chrXI:162341-162712 ( 21) GGGGGTCGAACCCATAATCTTCTGATTAG 1 chrIV:667867-668216 ( 26) CGGGATCGAACCGCTGATCCCCGCGTTAT 1 chrVII:738962-739319 ( 67) CGGGATCGAACCGCTGATCCCCGCGTTAT 1 chrXII:1052001-1052248 ( 7) CGGGATCGAACCGCTGATCCCCGCGTTAT 1 chrIX:210497-210863 ( 70) CGGGATCGAACCGCTGATCCCCGCGTTAT 1 chrVII:328426-328856 ( 25) GGGAGTCGAACCCCGGTCTCCACGGTGAA 1 chrV:176938-177334 ( 46) GGGAGTCGAACCCCGGTCTCCACGGTGAA 1 chrVII:401451-401614 ( 55) GGGAGTCGAACCCCGGTCTCCACGGTGAA 1 chrV:354771-355146 ( 59) GGGAGTCGAACCCCGGTCTCCACGGTGAA 1 chrV:487228-487535 ( 10) GGGAGTCGAACCCCGGTCTCCACGGTGAA 1 chrII:645007-645370 ( 62) GGGAGTCGAACCCCGGTCTCCACGGTGAA 1 chrXI:140800-141244 ( 56) GGGAGTCGAACCCCGGTCTCCACGGTGAA 1 chrXIV:104657-105058 ( 32) CGGATTTGAACCGATGATCTCCACATTAC 1 chrIII:295325-295754 ( 29) CGGATTTGAACCGATGATCTCCACATTAC 1 chrVIII:115973-116346 ( 8) CGGATTTGAACCGATGATCTCCACATTAC 1 chrXV:113669-113961 ( 71) CGGATTTGAACCGATGATCTCCACATTAC 1 chrIV:434138-434446 ( 32) CGGATTTGAACCGATGATCTCCACATTAC 1 chrII:266230-266613 ( 41) CGGATTTGAACCGATGATCTCCACATTAC 1 chrVII:774181-774541 ( 72) CGGAATCGAACCGGAGACCTCTCCCATGC 1 chrX:197207-197307 ( 32) CGGAATCGAACCGGAGACCTCTCCCATGC 1 chrVIII:146089-146447 ( 34) CGGAATCGAACCGGAGACCTCTCCCATGC 1 chrXVI:856748-857090 ( 67) CGGAATCGAACCGGAGACCTCTCCCATGC 1 chrXII:656834-657153 ( 1) CGGAATCGAACCGGAGACCTCTCCCATGC 1 chrX:531673-531773 ( 36) CGGAATCGAACCGGGGGCCCAACGATGGC 1 chrVII:845482-845867 ( 57) CGGAATCGAACCGGGGGCCCAACGATGGC 1 chrIV:83399-83727 ( 67) CGGAATCGAACCGGGGGCCCAACGATGGC 1 chrXVI:572096-572522 ( 42) CGGAATCGAACCGGGGGCCCAACGATGGC 1 chrIV:359422-359810 ( 68) GGGGCTCGAACCCCTGACATTTCGGTATC 1 chrXV:438481-438877 ( 71) GGGGCTCGAACCCCTGACATTTCGGTATC 1 chrXII:875235-875598 ( 67) GGGGCTCGAACCCCTGACATTTCGGTATC 1 chrXIV:631730-632058 ( 12) GGGACTCGAACCCGGGACCTCCCGCACCC 1 chrX:538422-538522 ( 67) GGGACTCGAACCCGCAGTCTTCTCCTTAG 1 chrX:422800-422900 ( 68) GAGGTTCGAACTCTCGACCTTCAGATTAT 1 chrXV:976249-976621 ( 70) GAGGTTCGAACTCTCGACCTTCAGATTAT 1 chrVII:440547-440977 ( 14) GTGGATCGAACACAGGACCTCCAGATAAC 1 chrVIII:358342-358724 ( 5) GTGGATCGAACACAGGACCTCCAGATAAC 1 chrVII:730979-731337 ( 64) GAGGGTTGAACTCACGATCTTGCGATTAA 1 chrVI:137370-137691 ( 16) GAGGGTTGAACTCACGATCTTGCGATTAA 1 chrXIV:102566-102952 ( 42) GAGGGTTGAACTCACGATCTTGCGATTAA 1 chrIV:1075334-1075709 ( 11) GAGGATCGAACTCGGGACCTTTGCCGTGT 1 chrVIII:475585-475933 ( 7) GAGGATCGAACTCGGGACCTTTGCCGTGT 1 chrXVI:55915-56439 ( 52) AGGAATTGAACCTGCAACCCTTCGATTGC 1 chrXI:379662-379859 ( 5) CAGGATCGAACTGGGGACGTTCTGCGTGT 1 chrXIV:442851-443279 ( 66) GAGATTCGAACTCTTGCATCTTACGATAC 1 chrXI:458443-458794 ( 64) GAGATTCGAACTCTTGCATCTTACGATAC 1 chrXII:710676-710852 ( 12) AGGAATCACACCCACGCATCTCATTTTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRVTCGAACCSVKGAYCTYHHSRTTAM MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 41100 bayes= 6.43872 E= 1.8e-257 -315 91 165 -1250 -83 -1250 204 -315 -1250 -1250 237 -1250 70 -1250 137 -1250 24 -2 52 -83 -1250 -1250 -1250 170 -1250 210 -1250 -83 -415 -1250 235 -1250 168 -348 -1250 -1250 170 -1250 -1250 -1250 -1250 237 -1250 -1250 -315 204 -1250 -83 -1250 169 91 -415 9 84 42 -215 -183 -48 60 65 -35 -1250 198 -1250 127 -190 -116 -135 -257 165 -1250 17 -257 198 -348 -83 -1250 76 -1250 113 -215 122 -1250 65 -7 110 -190 -35 -45 110 -90 -25 -1250 91 169 -415 75 -2 52 -415 -115 -1250 -190 140 -183 -348 -2 120 113 -348 42 -257 -15 122 -68 -98 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRVTCGAACCSVKGAYCTYHHSRTTAM MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 58 E= 1.8e-257 0.034483 0.362069 0.603448 0.000000 0.172414 0.000000 0.793103 0.034483 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.362069 0.189655 0.275862 0.172414 0.000000 0.000000 0.000000 1.000000 0.000000 0.827586 0.000000 0.172414 0.017241 0.000000 0.982759 0.000000 0.982759 0.017241 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.034483 0.793103 0.000000 0.172414 0.000000 0.620690 0.362069 0.017241 0.327586 0.344828 0.258621 0.068966 0.086207 0.137931 0.293103 0.482759 0.241379 0.000000 0.758621 0.000000 0.741379 0.051724 0.086207 0.120690 0.051724 0.603448 0.000000 0.344828 0.051724 0.758621 0.017241 0.172414 0.000000 0.327586 0.000000 0.672414 0.068966 0.448276 0.000000 0.482759 0.293103 0.413793 0.051724 0.241379 0.224138 0.413793 0.103448 0.258621 0.000000 0.362069 0.620690 0.017241 0.517241 0.189655 0.275862 0.017241 0.137931 0.000000 0.051724 0.810345 0.086207 0.017241 0.189655 0.706897 0.672414 0.017241 0.258621 0.051724 0.275862 0.448276 0.120690 0.155172 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRVTCGAACCSVKGAYCTYHHSRTTAM MEME-2 regular expression -------------------------------------------------------------------------------- [GC]GG[AG][AG]TCGAACC[CG][CAG][TG][GA]A[CT]C[TC][TC][CAT][CTA][GC][AG]TT[AG][CA] -------------------------------------------------------------------------------- Time 604.00 secs. ******************************************************************************** ******************************************************************************** MOTIF SYSVTATAGTGTARYGGYTATCACWTYVSG MEME-3 width = 30 sites = 23 llr = 635 E-value = 4.2e-119 ******************************************************************************** -------------------------------------------------------------------------------- Motif SYSVTATAGTGTARYGGYTATCACWTYVSG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::317:a::::85::2::8::8:3::4:: pos.-specific C 3343:2::::::::4::4:2:a:9114352 probability G 61531:::a:a2:5:a8:::::2:1::358 matrix T 16::81a::a:82:6::6a:a::1596::: bits 2.4 * * * * 2.1 * * * * 1.9 * * * * * 1.7 ***** ** * ** * * Relative 1.4 ***** ** * ** * * ** Entropy 1.2 * ****** ** ****** * ** (39.8 bits) 0.9 * * * ****************** ** ** 0.7 *** * ****************** ** ** 0.5 *** ******************** ***** 0.2 ****************************** 0.0 ------------------------------ Multilevel GTGATATAGTGTAATGGTTATCACTTTACG consensus CCCC GC C A CCG sequence G G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYSVTATAGTGTARYGGYTATCACWTYVSG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrIV:520816-521154 + 38 3.82e-16 CCATTTTAGG GTCCTATAGTGTAGTGGTTATCACTTTCGG TTTTGATCCG chrIII:168199-168549 - 18 3.82e-16 AGAAGTCCTG GTCCTATAGTGTAGTGGTTATCACTTTCGG TTTTGATCCG chrXII:448479-448884 - 60 3.82e-16 AGAAGTTCCG GTCCTATAGTGTAGTGGTTATCACTTTCGG TTTTGATCCG chrVIII:134194-134529 + 11 3.82e-16 GTAAGTTCCG GTCCTATAGTGTAGTGGTTATCACTTTCGG TTTTGATCCG chrIV:802628-802962 - 27 3.82e-16 TGAATTGTCG GTCCTATAGTGTAGTGGTTATCACTTTCGG TTTTGATCCG chrIV:645061-645381 - 23 3.82e-16 AGTTGTTACG GTCCTATAGTGTAGTGGTTATCACTTTCGG TTTTGATCCG chrV:176938-177334 + 14 3.16e-15 CTACTTTGAT CCGATATAGTGTAACGGCTATCACATCACG CTTTCACCGT chrXIII:290639-290978 + 44 3.16e-15 GAAATATAAT CCGATATAGTGTAACGGCTATCACATCACG CTTTCACCGT chrV:354771-355146 + 27 3.16e-15 GTATTGTAAT CCGATATAGTGTAACGGCTATCACATCACG CTTTCACCGT chrV:487228-487535 - 41 3.16e-15 TGAATTTAAT CCGATATAGTGTAACGGCTATCACATCACG CTTTCACCGT chrII:645007-645370 + 30 3.16e-15 GAGTTATTAT CCGATATAGTGTAACGGCTATCACATCACG CTTTCACCGT chrXVI:210099-210429 - 19 3.16e-15 CAATTATTGT CCGATATAGTGTAACGGCTATCACATCACG CTTTCACCGT chrX:115858-115958 - 12 3.16e-15 CGCTTATAAT CCGATATAGTGTAACGGCTATCACATCACG CTTTCACCGT chrIV:1017095-1017448 - 27 7.86e-14 AAGGTACAAT CCGATGTAGTGTAACGGCTATCACATCACG TTCTCACCGT chrV:130989-131309 - 24 6.44e-13 TAATTAAGAG GTTTTATAGTGTAGTGGTTATCACTTTCGG TTTTGATCCG chrIV:1075334-1075709 - 43 2.36e-12 CGTAATATTG TTCCAATAGTGTAGCGGCTATCACGTTGCC TTCACACGGC chrVIII:475585-475933 - 39 2.36e-12 TAAAAGTCTG TTCCAATAGTGTAGCGGCTATCACGTTGCC TTCACACGGC chrXII:92387-92783 + 19 5.62e-12 ATAAGGGCGT GTGGTCTAGTGGTATGATTCTCGCTTTGGG CGACTTCCTG chrXIV:567982-568258 + 51 5.62e-12 AATCGGGCGT GTGGTCTAGTGGTATGATTCTCGCTTTGGG CGACTTCCTG chrXIII:195952-196310 - 54 5.62e-12 ACAAGGGCGT GTGGTCTAGTGGTATGATTCTCGCTTTGGG CGACTTCCTG chrVI:101228-101546 + 45 5.62e-12 ATTCGGGCGT GTGGTCTAGTGGTATGATTCTCGCTTTGGG CGACTTCCTG chrXV:110826-111149 - 66 3.71e-11 ACCCG GGCGGTTAGTGTAGTGGTTATCATCCCACC CTTCCAAGGT chrVII:779468-779810 + 28 3.71e-11 GTTAACCCCG GGCGGTTAGTGTAGTGGTTATCATCCCACC CTTCCAAGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYSVTATAGTGTARYGGYTATCACWTYVSG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:520816-521154 3.8e-16 37_[+3]_33 chrIII:168199-168549 3.8e-16 17_[-3]_53 chrXII:448479-448884 3.8e-16 59_[-3]_11 chrVIII:134194-134529 3.8e-16 10_[+3]_60 chrIV:802628-802962 3.8e-16 26_[-3]_44 chrIV:645061-645381 3.8e-16 22_[-3]_48 chrV:176938-177334 3.2e-15 13_[+3]_57 chrXIII:290639-290978 3.2e-15 43_[+3]_27 chrV:354771-355146 3.2e-15 26_[+3]_44 chrV:487228-487535 3.2e-15 40_[-3]_30 chrII:645007-645370 3.2e-15 29_[+3]_41 chrXVI:210099-210429 3.2e-15 18_[-3]_52 chrX:115858-115958 3.2e-15 11_[-3]_59 chrIV:1017095-1017448 7.9e-14 26_[-3]_44 chrV:130989-131309 6.4e-13 23_[-3]_47 chrIV:1075334-1075709 2.4e-12 42_[-3]_28 chrVIII:475585-475933 2.4e-12 38_[-3]_32 chrXII:92387-92783 5.6e-12 18_[+3]_52 chrXIV:567982-568258 5.6e-12 50_[+3]_20 chrXIII:195952-196310 5.6e-12 53_[-3]_17 chrVI:101228-101546 5.6e-12 44_[+3]_26 chrXV:110826-111149 3.7e-11 65_[-3]_5 chrVII:779468-779810 3.7e-11 27_[+3]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYSVTATAGTGTARYGGYTATCACWTYVSG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SYSVTATAGTGTARYGGYTATCACWTYVSG width=30 seqs=23 chrIV:520816-521154 ( 38) GTCCTATAGTGTAGTGGTTATCACTTTCGG 1 chrIII:168199-168549 ( 18) GTCCTATAGTGTAGTGGTTATCACTTTCGG 1 chrXII:448479-448884 ( 60) GTCCTATAGTGTAGTGGTTATCACTTTCGG 1 chrVIII:134194-134529 ( 11) GTCCTATAGTGTAGTGGTTATCACTTTCGG 1 chrIV:802628-802962 ( 27) GTCCTATAGTGTAGTGGTTATCACTTTCGG 1 chrIV:645061-645381 ( 23) GTCCTATAGTGTAGTGGTTATCACTTTCGG 1 chrV:176938-177334 ( 14) CCGATATAGTGTAACGGCTATCACATCACG 1 chrXIII:290639-290978 ( 44) CCGATATAGTGTAACGGCTATCACATCACG 1 chrV:354771-355146 ( 27) CCGATATAGTGTAACGGCTATCACATCACG 1 chrV:487228-487535 ( 41) CCGATATAGTGTAACGGCTATCACATCACG 1 chrII:645007-645370 ( 30) CCGATATAGTGTAACGGCTATCACATCACG 1 chrXVI:210099-210429 ( 19) CCGATATAGTGTAACGGCTATCACATCACG 1 chrX:115858-115958 ( 12) CCGATATAGTGTAACGGCTATCACATCACG 1 chrIV:1017095-1017448 ( 27) CCGATGTAGTGTAACGGCTATCACATCACG 1 chrV:130989-131309 ( 24) GTTTTATAGTGTAGTGGTTATCACTTTCGG 1 chrIV:1075334-1075709 ( 43) TTCCAATAGTGTAGCGGCTATCACGTTGCC 1 chrVIII:475585-475933 ( 39) TTCCAATAGTGTAGCGGCTATCACGTTGCC 1 chrXII:92387-92783 ( 19) GTGGTCTAGTGGTATGATTCTCGCTTTGGG 1 chrXIV:567982-568258 ( 51) GTGGTCTAGTGGTATGATTCTCGCTTTGGG 1 chrXIII:195952-196310 ( 54) GTGGTCTAGTGGTATGATTCTCGCTTTGGG 1 chrVI:101228-101546 ( 45) GTGGTCTAGTGGTATGATTCTCGCTTTGGG 1 chrXV:110826-111149 ( 66) GGCGGTTAGTGTAGTGGTTATCATCCCACC 1 chrVII:779468-779810 ( 28) GGCGGTTAGTGTAGTGGTTATCATCCCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYSVTATAGTGTARYGGYTATCACWTYVSG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 40529 bayes= 11.8468 E= 4.2e-119 -1117 85 155 -182 -1117 85 -115 88 -1117 117 144 -282 18 85 44 -282 -182 -1117 -115 143 118 -15 -215 -182 -1117 -1117 -1117 170 170 -1117 -1117 -1117 -1117 -1117 237 -1117 -1117 -1117 -1117 170 -1117 -1117 237 -1117 -1117 -1117 -15 143 143 -1117 -1117 -82 76 -1117 131 -1117 -1117 117 -1117 88 -1117 -1117 237 -1117 -82 -1117 210 -1117 -1117 117 -1117 88 -1117 -1117 -1117 170 143 -15 -1117 -1117 -1117 -1117 -1117 170 -1117 237 -1117 -1117 143 -1117 -15 -1117 -1117 224 -1117 -182 18 -115 -115 64 -1117 -115 -1117 157 -1117 117 -1117 88 50 66 44 -1117 -1117 144 131 -1117 -1117 -15 210 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYSVTATAGTGTARYGGYTATCACWTYVSG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 23 E= 4.2e-119 0.000000 0.347826 0.565217 0.086957 0.000000 0.347826 0.086957 0.565217 0.000000 0.434783 0.521739 0.043478 0.347826 0.347826 0.260870 0.043478 0.086957 0.000000 0.086957 0.826087 0.695652 0.173913 0.043478 0.086957 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.173913 0.826087 0.826087 0.000000 0.000000 0.173913 0.521739 0.000000 0.478261 0.000000 0.000000 0.434783 0.000000 0.565217 0.000000 0.000000 1.000000 0.000000 0.173913 0.000000 0.826087 0.000000 0.000000 0.434783 0.000000 0.565217 0.000000 0.000000 0.000000 1.000000 0.826087 0.173913 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.826087 0.000000 0.173913 0.000000 0.000000 0.913043 0.000000 0.086957 0.347826 0.086957 0.086957 0.478261 0.000000 0.086957 0.000000 0.913043 0.000000 0.434783 0.000000 0.565217 0.434783 0.304348 0.260870 0.000000 0.000000 0.521739 0.478261 0.000000 0.000000 0.173913 0.826087 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYSVTATAGTGTARYGGYTATCACWTYVSG MEME-3 regular expression -------------------------------------------------------------------------------- [GC][TC][GC][ACG]TATAGTGTA[AG][TC]GG[TC]TATCAC[TA]T[TC][ACG][CG]G -------------------------------------------------------------------------------- Time 883.62 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:788341-788698 3.93e-01 100 chrII:9432-9733 1.95e-04 57_[-1(3.55e-08)]_22 chrVIII:126562-126946 9.29e-01 100 chrVI:167303-167640 8.37e-05 22_[-1(2.27e-05)]_22_[-2(1.63e-06)]_\ 6 chrXII:793740-795202 3.03e-01 100 chrIX:138067-139311 9.40e-01 100 chrXVI:572096-572522 6.41e-11 16_[-1(7.68e-07)]_4_[-2(3.49e-11)]_\ 30 chrX:73751-73851 3.92e-01 100 chrIX:26808-26983 9.91e-01 100 chrVII:700500-701215 9.94e-01 100 chrXII:374194-374565 1.09e-08 32_[-1(2.98e-08)]_6_[-2(7.44e-08)]_\ 12 chrXIII:761859-762113 8.62e-01 100 chrII:266230-266613 2.77e-15 13_[-1(3.26e-11)]_6_[-2(1.58e-11)]_\ 31 chrXII:673855-674207 3.59e-01 100 chrII:409660-410044 9.24e-01 100 chrXV:678861-679166 6.73e-02 100 chrVIII:451323-452710 4.13e-02 100 chrXII:1028244-1028557 8.13e-01 100 chrXII:636852-637484 4.95e-01 100 chrXII:731973-732285 3.17e-07 17_[-1(2.94e-09)]_9_[+2(3.13e-05)]_\ 24 chrVII:561567-561751 7.53e-01 100 chrIV:946131-946544 3.35e-02 31_[-1(2.27e-05)]_48 chrXII:922153-922519 7.10e-01 100 chrVIII:34577-34908 5.83e-01 100 chrV:249668-250052 7.15e-01 100 chrIV:434138-434446 2.77e-15 31_[+2(1.58e-11)]_6_[+1(3.26e-11)]_\ 13 chrIV:522556-522940 4.67e-01 100 chrXI:431408-431623 8.41e-01 100 chrIV:541265-541758 7.45e-01 100 chrXI:617707-618091 2.76e-01 100 chrIV:579623-580080 8.03e-01 100 chrIX:210497-210863 2.36e-15 41_[-1(1.17e-10)]_7_[-2(2.36e-12)]_\ 2 chrX:126018-126118 4.04e-01 100 chrXV:382934-383596 5.48e-01 100 chrVII:555359-555668 1.05e-01 100 chrXIV:494139-494523 3.76e-01 100 chrXIII:362916-363265 1.60e-02 100 chrXIV:664439-664823 1.24e-01 100 chrXVI:435779-436128 1.33e-01 100 chrII:479029-479413 7.80e-01 100 chrII:165030-165921 6.16e-02 52_[-3(7.76e-05)]_18 chrXII:1052001-1052248 2.36e-15 6_[+2(2.36e-12)]_7_[+1(1.17e-10)]_\ 37 chrXII:962891-963221 1.44e-04 21_[+1(3.55e-08)]_58 chrXII:818478-818776 3.48e-06 32_[+3(9.90e-06)]_2_[-2(2.10e-06)]_\ 7 chrIII:138563-138877 7.49e-01 100 chrVII:1050312-1050448 2.52e-01 100 chrVII:480180-480518 6.12e-01 100 chrIX:98944-99040 4.13e-01 96 chrV:69074-69415 3.16e-02 100 chrIV:1360524-1360908 7.60e-01 100 chrXV:678168-678353 9.88e-01 100 chrVIII:103920-104210 4.89e-01 100 chrXV:901374-901758 5.94e-01 100 chrXIV:303191-303503 8.29e-01 100 chrIV:599835-600166 8.79e-02 17_[+2(3.93e-05)]_54 chrXV:908699-908866 7.14e-01 100 chrX:541397-541497 1.47e-03 51_[-2(7.02e-05)]_20 chrV:492260-492577 1.23e-04 28_[+1(2.98e-08)]_51 chrXIII:667850-668234 3.23e-01 100 chrVIII:358342-358724 1.78e-11 4_[+2(4.42e-10)]_25_[+1(1.14e-08)]_\ 21 chrII:408680-408902 4.67e-01 100 chrVI:223386-223510 1.68e-01 100 chrVIII:34884-35221 5.47e-01 100 chrIV:1489127-1489720 9.50e-01 100 chrVII:702926-703272 7.97e-01 100 chrVIII:237766-238099 5.56e-05 29_[+1(1.14e-08)]_50 chrVII:990013-990374 6.24e-01 100 chrXII:522952-523336 3.39e-01 100 chrXIII:762689-763073 9.28e-01 100 chrXII:838541-838951 7.96e-01 100 chrVII:545403-545502 5.82e-01 99 chrVIII:296910-297169 3.82e-01 100 chrIV:130038-130332 7.99e-01 100 chrXV:216276-216674 6.72e-01 100 chrVI:64098-64482 9.96e-01 100 chrX:390935-391035 1.70e-04 19_[+1(1.09e-07)]_60 chrXI:108771-109060 7.85e-01 100 chrXIV:174253-174447 5.08e-01 100 chrXV:274499-274903 1.16e-07 28_[-1(1.43e-10)]_51 chrXIV:575299-575545 8.42e-01 100 chrV:140488-140876 6.17e-01 100 chrXII:818913-819131 1.00e-01 100 chrVII:738962-739319 2.36e-15 38_[-1(1.17e-10)]_7_[-2(2.36e-12)]_\ 5 chrV:302932-303316 5.75e-01 100 chrIV:619841-620183 1.09e-08 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3.83e-01 100 chrXI:164005-164143 4.69e-01 100 chrVI:65013-65304 3.96e-01 100 chrVIII:466826-467134 1.35e-01 100 chrXV:424102-424634 5.63e-01 100 chrXV:161190-161345 5.04e-01 100 chrXV:160415-160594 7.46e-01 100 chrIV:519626-519910 8.00e-06 31_[-1(3.55e-08)]_17_[-2(8.24e-05)]_\ 2 chrXIV:776734-777118 7.83e-01 100 chrVII:319158-319542 6.68e-01 100 chrXIV:501052-501436 6.89e-01 100 chrXII:897738-898020 7.31e-01 100 chrVIII:505845-506166 2.59e-01 100 chrXII:283252-283678 2.95e-01 100 chrXV:670968-671659 6.40e-01 100 chrV:117751-118250 1.37e-01 100 chrIX:420947-421331 4.25e-01 100 chrII:681619-681796 5.16e-01 100 chrX:538422-538522 8.57e-10 40_[-1(6.72e-06)]_5_[-2(1.62e-10)]_\ 5 chrX:622429-622529 3.57e-02 30_[-2(5.65e-05)]_41 chrXV:31333-31717 1.40e-01 100 chrVII:437862-438246 9.48e-01 100 chrIX:338756-338982 9.61e-01 100 chrVII:185596-185921 4.01e-14 15_[+2(4.70e-13)]_6_[+1(6.67e-09)]_\ 29 chrII:45026-45331 8.75e-01 100 chrII:373594-373978 4.27e-01 100 chrXVI:432762-432995 5.73e-01 100 chrXI:355333-356565 9.48e-01 100 chrII:645007-645370 3.04e-19 29_[+3(3.16e-15)]_2_[-2(8.67e-12)]_\ 10 chrXIII:195952-196310 2.96e-10 53_[-3(5.62e-12)]_17 chrXIII:253365-253571 7.54e-01 100 chrXIV:234273-234657 2.17e-01 100 chrXVI:821846-822249 6.33e-01 100 chrVI:137370-137691 1.05e-11 15_[+2(8.68e-10)]_7_[+1(2.94e-09)]_\ 28 chrIX:316148-316584 5.74e-02 28_[+2(9.16e-05)]_43 chrXV:353934-354269 1.95e-07 34_[+1(3.26e-11)]_45 chrIX:316876-317260 3.70e-01 100 chrVII:736167-736540 2.14e-10 69_[-2(1.55e-12)]_2 chrXII:370504-370791 1.42e-01 100 chrIV:525547-525931 6.13e-01 100 chrIV:359422-359810 9.81e-13 17_[-1(4.75e-09)]_29_[-2(1.21e-10)]_\ 4 chrV:441842-442591 2.74e-01 100 chrV:431014-431511 1.90e-01 100 chrV:435664-435968 1.26e-05 30_[+1(6.67e-09)]_49 chrX:59014-59114 1.06e-07 22_[+1(3.26e-11)]_57 chrX:204571-204671 5.20e-02 100 chrIII:295325-295754 2.77e-15 1_[-1(3.26e-11)]_6_[-2(1.58e-11)]_\ 43 chrXII:806439-806781 5.65e-01 100 chrXIV:567982-568258 2.87e-10 50_[+3(5.62e-12)]_20 chrX:651293-651393 9.59e-01 100 chrXV:796997-797320 2.32e-01 100 chrVIII:48199-48583 3.09e-01 100 chrXIV:351990-352219 1.22e-01 100 chrXV:110826-111149 4.46e-14 34_[+2(1.02e-09)]_2_[-3(3.71e-11)]_\ 5 chrXVI:699981-700340 1.33e-01 100 chrII:605315-605474 3.91e-01 100 chrX:233768-233868 2.55e-04 66_[-1(2.98e-08)]_13 chrVII:661581-661931 3.15e-03 62_[+2(8.03e-05)]_9 chrVI:95496-95831 3.39e-01 100 chrVIII:35413-35926 6.25e-01 100 chrIV:1345205-1345655 3.36e-01 100 chrXV:33356-33740 5.33e-01 100 chrV:86407-86786 1.70e-06 64_[-1(2.47e-10)]_15 chrX:620418-620518 2.87e-01 100 chrV:303876-304260 1.32e-01 100 chrVII:346153-346645 3.41e-01 100 chrXV:253873-254070 4.18e-01 100 chrXII:167844-168186 2.30e-06 32_[+1(2.47e-10)]_47 chrXIII:701970-702354 1.73e-01 100 chrX:197207-197307 7.33e-16 31_[+2(1.99e-11)]_6_[+1(7.60e-10)]_\ 13 chrV:487228-487535 3.04e-19 9_[+2(8.67e-12)]_2_[-3(3.16e-15)]_\ 30 chrXI:231385-231584 2.14e-02 100 chrXV:797810-798194 8.28e-02 51_[+1(7.31e-05)]_28 chrX:216605-216705 6.44e-01 100 chrXV:779727-781006 5.54e-01 100 chrIV:117206-117568 3.80e-01 100 chrVII:774181-774541 7.33e-16 44_[-1(7.60e-10)]_6_[-2(1.99e-11)] chrXIV:104657-105058 2.77e-15 4_[-1(3.26e-11)]_6_[-2(1.58e-11)]_\ 40 chrIV:1233751-1234025 8.14e-01 100 chrVII:148262-148416 6.60e-01 100 chrIV:221984-222282 4.05e-02 34_[-1(3.55e-05)]_45 chrXIV:392453-392624 9.65e-01 100 chrXV:979190-979497 8.60e-01 100 chrIX:255141-255525 2.59e-01 100 chrV:354771-355146 3.04e-19 26_[+3(3.16e-15)]_2_[-2(8.67e-12)]_\ 13 chrXVI:282159-282543 9.59e-01 100 chrXII:426958-427278 5.38e-02 100 chrXII:92387-92783 2.96e-10 18_[+3(5.62e-12)]_52 chrXVI:520199-520514 2.22e-01 100 chrXVI:587307-587576 4.70e-01 100 chrXIII:551381-551777 9.67e-01 100 chrXII:241662-241994 7.38e-01 100 chrXII:214777-215090 4.37e-16 9_[+2(1.17e-12)]_6_[+1(1.17e-10)]_\ 35 chrVII:973588-973972 7.94e-01 100 chrXII:498530-498844 5.23e-01 100 chrII:163621-164005 2.85e-01 100 chrX:391883-391983 7.00e-02 100 chrXVI:575380-575764 4.83e-01 100 chrXIV:444481-444756 9.99e-01 100 chrX:120473-120573 3.86e-01 100 chrVI:157827-158173 1.11e-04 29_[+1(1.14e-08)]_50 chrXIV:569769-570097 7.30e-07 29_[+1(1.17e-10)]_50 chrXV:391623-391924 4.79e-01 100 chrVI:31944-32248 9.80e-01 100 chrXVI:377958-378342 4.62e-01 100 chrVIII:120310-120455 3.50e-01 100 chrXIII:651442-651826 7.35e-01 100 chrXV:43343-43648 7.33e-01 100 chrXIV:500156-500794 6.81e-01 100 chrIV:520816-521154 1.13e-18 37_[+3(3.82e-16)]_2_[-2(7.25e-09)]_\ 2 chrXIV:461931-462163 9.42e-01 100 chrVI:131252-131617 2.61e-01 100 chrVII:438602-438886 6.47e-01 100 chrX:453492-453592 9.52e-01 100 chrV:266249-266633 8.78e-01 100 chrXII:784196-784563 1.45e-07 31_[-1(1.43e-10)]_48 chrVI:83968-84247 4.33e-01 100 chrIII:57296-57680 6.27e-01 100 chrXVI:608265-608571 4.93e-01 100 chrIV:579092-579327 8.93e-01 100 chrXIII:754438-754735 6.48e-01 100 chrV:362839-363223 9.97e-01 100 chrVII:401451-401614 4.93e-08 54_[+2(8.67e-12)]_17 chrIX:99665-99987 4.84e-01 100 chrII:88069-88604 6.64e-01 100 chrVII:730979-731337 1.05e-11 35_[-1(2.94e-09)]_7_[-2(8.68e-10)]_\ 8 chrXII:713182-713536 8.44e-01 100 chrXIII:732066-732371 6.48e-01 100 chrX:531673-531773 1.15e-10 10_[-1(7.68e-07)]_4_[-2(3.49e-11)]_\ 36 chrXV:28651-29035 4.14e-01 100 chrIII:13814-14198 9.49e-01 100 chrXVI:586697-586848 9.82e-01 100 chrV:491077-491392 1.63e-02 100 chrVII:310538-310870 6.46e-01 100 chrV:267777-268161 1.57e-01 100 chrX:157489-157589 2.67e-01 100 chrIV:385128-385512 6.63e-01 100 chrXII:201913-202118 5.68e-01 100 chrXVI:828888-829438 1.07e-02 42_[+3(6.37e-05)]_28 chrV:396858-397242 5.41e-01 100 chrXVI:377086-377470 8.78e-01 100 chrXIII:500290-500674 4.30e-01 100 chrXIII:290639-290978 2.00e-11 43_[+3(3.16e-15)]_27 chrVIII:125943-126273 8.91e-01 100 chrVI:31187-31571 5.86e-01 100 chrXV:832424-832725 9.02e-01 100 chrXI:514069-514443 7.21e-01 100 chrXV:978822-979105 6.17e-01 100 chrXV:759057-759376 1.97e-01 100 chrXVI:795046-795430 8.78e-01 100 chrXIV:442851-443279 3.87e-04 65_[-2(1.04e-07)]_6 chrXIV:716127-716583 9.99e-01 100 chrVII:556203-556587 3.14e-02 24_[-3(6.01e-05)]_46 chrV:176938-177334 3.04e-19 13_[+3(3.16e-15)]_2_[-2(8.67e-12)]_\ 26 chrXVI:775657-775993 1.09e-01 100 chrVII:328426-328856 2.82e-08 24_[-2(8.67e-12)]_47 chrVII:400207-400591 8.45e-01 100 chrI:28563-28876 8.11e-01 100 chrVII:534042-534175 6.80e-01 100 chrII:391516-391835 6.26e-01 100 chrXIII:747793-748122 5.52e-02 100 chrXIV:631730-632058 1.62e-13 11_[+2(1.47e-10)]_5_[+1(7.53e-05)]_\ 34 chrXIII:302769-303048 4.11e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************