Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.010534
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.055192
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.0664
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.012024
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background
Finished invoke:
  name: bg  status: 0  time: 0.009407
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 488.526261
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 51.930297
Invoking:
  centrimo -seqlen 316 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.16079
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.296407
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background -primary TRGYBYAGTGGKTAR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.307789
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background -primary GGRDTCGAACCSVKGAYCTYM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.29529
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background -primary HHWTTWWACAYCCRTACATYW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.284773
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background -primary CACGGW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.214601
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background -primary CRCCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.198886
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background -primary AASGCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.20545
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background -primary CCAAVAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.175539
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background -primary GCGCTHCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.180205
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background -primary CGGCCAM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.186069
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background -primary CGCCASAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.197132
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background -primary GACTSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.161771
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background -primary GCTAWCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.18964
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background -primary ATCKTGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.199225
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background -primary ARAAAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.184491
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background -primary AGACCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo15  status: 0  time: 0.176597
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/spamo_out_16 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background -primary GCCATRGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo16  status: 0  time: 0.16435
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background --motif TRGYBYAGTGGKTAR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.158687
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background --motif GGRDTCGAACCSVKGAYCTYM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.161353
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background --motif HHWTTWWACAYCCRTACATYW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.159233
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background --motif CACGGW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.058732
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background --motif CRCCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.080047
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background --motif AASGCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.060223
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background --motif CCAAVAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.07598
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background --motif GCGCTHCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.077259
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background --motif CGGCCAM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.073592
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background --motif CGCCASAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.076657
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background --motif GACTSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.074825
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background --motif GCTAWCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.073626
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background --motif ATCKTGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.061018
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background --motif ARAAAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.059873
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background --motif AGACCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa
Finished invoke:
  name: fimo15  status: 0  time: 0.080201
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/fimo_out_16 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/background --motif GCCATRGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/AWRI1631--SWR1.fa
Finished invoke:
  name: fimo16  status: 0  time: 0.074221
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SWR1/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.162912
Done