Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/AWRI1631--STE12.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.037278
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/AWRI1631--STE12.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.076337
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/AWRI1631--STE12.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.084762
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.015705
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.06718
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/AWRI1631--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/background
Finished invoke:
  name: bg  status: 0  time: 0.01272
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 900.615142
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 80.438557
Invoking:
  centrimo -seqlen 456 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/AWRI1631--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.176866
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.505124
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/background -primary TGGCCCAGTBGGTARRGCGNY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/AWRI1631--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.29764
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/background -primary SGGRVTCGAACCSVBGAYCTY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/AWRI1631--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.283724
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/background -primary SAAARCSBDAWGTGATARCCRYTACACTAT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/AWRI1631--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.229564
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/background -primary SAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/AWRI1631--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.312741
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/background -primary CCHTAACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/AWRI1631--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.192824
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/background -primary ACCACYA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/AWRI1631--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.219223
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/AWRI1631--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.173526
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/background -primary AGTCAKAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/AWRI1631--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.170656
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/background -primary ATGGCAAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/AWRI1631--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.190681
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/background -primary ATCTKTTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/AWRI1631--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.172497
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/background -primary GKGGCCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/AWRI1631--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.182508
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/background -primary TCYGTACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/AWRI1631--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.157757
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/background -primary AKACAACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/AWRI1631--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.162086
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/background --motif TGGCCCAGTBGGTARRGCGNY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/AWRI1631--STE12.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.227504
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/background --motif SGGRVTCGAACCSVBGAYCTY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/AWRI1631--STE12.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.227176
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/background --motif SAAARCSBDAWGTGATARCCRYTACACTAT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/AWRI1631--STE12.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.23697
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/background --motif SAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/AWRI1631--STE12.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.135775
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/background --motif CCHTAACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/AWRI1631--STE12.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.153748
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/background --motif ACCACYA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/AWRI1631--STE12.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.153295
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/AWRI1631--STE12.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.154784
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/background --motif AGTCAKAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/AWRI1631--STE12.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.154129
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/background --motif ATGGCAAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/AWRI1631--STE12.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.155002
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/background --motif ATCTKTTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/AWRI1631--STE12.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.155372
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/background --motif GKGGCCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/AWRI1631--STE12.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.154536
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/background --motif TCYGTACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/AWRI1631--STE12.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.154523
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/background --motif AKACAACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/AWRI1631--STE12.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.157022
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.158528
Done