******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrVIII:475583-475969 1.0000 100 chrXIV:302932-303559 1.0000 100 chrV:283510-283966 1.0000 100 chrIV:835831-836113 1.0000 100 chrIV:1236665-1236780 1.0000 100 chrXIV:725958-726517 1.0000 100 chrXIV:442865-443276 1.0000 100 chrXI:458596-459052 1.0000 100 chrVII:479882-480336 1.0000 100 chrVII:1050217-1050547 1.0000 100 chrXVI:645365-645672 1.0000 100 chrX:355223-355323 1.0000 100 chrXVI:819343-819753 1.0000 100 chrXIV:499744-500806 1.0000 100 chrIX:187265-187721 1.0000 100 chrXIII:267978-268278 1.0000 100 chrVI:224948-225146 1.0000 100 chrI:139009-139332 1.0000 100 chrXV:160345-160801 1.0000 100 chrX:415874-415974 1.0000 100 chrIX:129976-130099 1.0000 100 chrX:422794-422894 1.0000 100 chrVIII:382945-383405 1.0000 100 chrVII:365085-365302 1.0000 100 chrIV:1081104-1081560 1.0000 100 chrXI:517735-518229 1.0000 100 chrXVI:213598-214054 1.0000 100 chrXI:38761-39217 1.0000 100 chrII:301375-301639 1.0000 100 chrI:68958-69414 1.0000 100 chrIV:355801-356103 1.0000 100 chrXII:932146-932440 1.0000 100 chrVI:55000-55455 1.0000 100 chrIX:138211-138979 1.0000 100 chrVIII:237766-238117 1.0000 100 chrXIV:172604-173060 1.0000 100 chrXIV:529447-529827 1.0000 100 chrXIV:413612-414068 1.0000 100 chrI:141647-141939 1.0000 100 chrIII:30624-31080 1.0000 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chrIX:325677-326150 1.0000 100 chrXV:274491-274885 1.0000 100 chrIV:645025-645386 1.0000 100 chrIV:386529-386985 1.0000 100 chrII:350682-350966 1.0000 100 chrXV:976243-976625 1.0000 100 chrXV:724933-725389 1.0000 100 chrIII:151140-151546 1.0000 100 chrXVI:581933-582229 1.0000 100 chrVII:706991-707212 1.0000 100 chrIV:1270418-1270874 1.0000 100 chrXI:610968-611339 1.0000 100 chrVI:137312-137696 1.0000 100 chrII:88880-89336 1.0000 100 chrXII:636903-637221 1.0000 100 chrXIII:732008-732464 1.0000 100 chrVII:98248-98704 1.0000 100 chrV:322485-322849 1.0000 100 chrIII:228778-229009 1.0000 100 chrXI:84020-84459 1.0000 100 chrIX:394733-395157 1.0000 100 chrXIII:195954-196311 1.0000 100 chrXIII:667174-667473 1.0000 100 chrXII:1028203-1028659 1.0000 100 chrX:79480-79580 1.0000 100 chrXV:723074-723188 1.0000 100 chrIV:1305477-1305805 1.0000 100 chrXIV:631747-632057 1.0000 100 chrX:73749-73849 1.0000 100 chrX:652203-652303 1.0000 100 chrIV:619879-620168 1.0000 100 chrVIII:146439-146794 1.0000 100 chrVII:287256-287624 1.0000 100 chrII:256491-256947 1.0000 100 chrXV:254470-254661 1.0000 100 chrV:138520-139008 1.0000 100 chrX:69029-69129 1.0000 100 chrXII:499389-499608 1.0000 100 chrXI:379616-379950 1.0000 100 chrXV:571808-572087 1.0000 100 chrV:85105-85583 1.0000 100 chrIV:221268-221724 1.0000 100 chrXV:80894-81130 1.0000 100 chrXII:300350-300698 1.0000 100 chrVII:610919-611375 1.0000 100 chrXV:619211-619544 1.0000 100 chrXVI:694661-694813 1.0000 100 chrXVI:173645-173898 1.0000 100 chrXVI:693496-693952 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 566 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 56600 N= 566 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.291 C 0.209 G 0.209 T 0.291 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--STE12/background): A 0.301 C 0.199 G 0.199 T 0.301 ******************************************************************************** ******************************************************************************** MOTIF TGGCCCAGTBGGTARRGCGNY MEME-1 width = 21 sites = 54 llr = 953 E-value = 1.7e-165 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCCCAGTBGGTARRGCGNY MEME-1 Description -------------------------------------------------------------------------------- Simplified A :2:::2a2:1::1755:::22 pos.-specific C :::a55:::2::1:12:7334 probability G :8a:22:8:3a71:53a3721 matrix T a:::21::a4:373:::::33 bits 2.3 * * * 2.1 ** * * 1.9 ** * * 1.6 * ** *** * * Relative 1.4 **** *** ** *** Entropy 1.2 **** *** ** *** (25.5 bits) 0.9 **** *** ** *** 0.7 ***** *** ** ** *** 0.5 ********* ********* 0.2 ******************* * 0.0 --------------------- Multilevel TGGCCCAGTTGGTAAAGCGTC consensus A TG G T TGG GCCT sequence G C C A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCCAGTBGGTARRGCGNY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrI:166135-166469 + 22 2.54e-11 GTTGGGCACA TGGCGCAGTTGGTAGCGCGCT TCCCTTGCAA chrIV:434178-434446 - 47 3.01e-11 GAAGCTTCTA TGGCCAAGTTGGTAAGGCGCC ACACTAGTAA chrVIII:115960-116355 - 45 3.01e-11 AGAGCTTCTA TGGCCAAGTTGGTAAGGCGCC ACACTAGTAA chrXV:113684-113929 + 53 3.01e-11 TTAGCTTCTA TGGCCAAGTTGGTAAGGCGCC ACACTAGTAA chrIII:295342-295736 + 2 3.01e-11 A TGGCCAAGTTGGTAAGGCGCC ACACTAGTAA chrX:59008-59108 - 17 3.01e-11 GAAGCTTCTA TGGCCAAGTTGGTAAGGCGCC ACACTAGTAA chrXV:438482-438872 + 23 3.79e-10 TCATCCTTGT TAGCTCAGTTGGTAGAGCGTT CGGCTTTTAA chrVII:115354-115694 + 21 3.79e-10 TCATCCTTGT TAGCTCAGTTGGTAGAGCGTT CGGCTTTTAA chrXII:875210-875590 + 33 3.79e-10 TCATCCTTGT TAGCTCAGTTGGTAGAGCGTT CGGCTTTTAA chrXVI:769022-769613 - 8 3.79e-10 TCATCCTTGT TAGCTCAGTTGGTAGAGCGTT CGGCTTT chrV:288285-288668 - 71 4.37e-10 TAGGCACTA TGGCCGAGTGGTTAAGGCGAC AGACTTGAAA chrXIV:569772-570091 - 32 6.61e-10 AGTGGTCTCT TGGCCCAGTTGGTTAAGGCAC CGTGCTAATA chrIX:183327-183679 - 33 6.61e-10 CCTGGTCTCT TGGCCCAGTTGGTTAAGGCAC CGTGCTAATA chrIX:210479-210859 + 53 6.61e-10 TCTGGTCTCT TGGCCCAGTTGGTTAAGGCAC CGTGCTAATA chrXVI:819343-819753 + 38 6.61e-10 AATGGTCTCT TGGCCCAGTTGGTTAAGGCAC CGTGCTAATA chrII:36261-36615 + 17 9.78e-10 TAAGCGGATT TAGCTCAGTTGGGAGAGCGCC AGACTGAAGA chrXVI:622447-622819 - 21 9.78e-10 TATGCGGATT TAGCTCAGTTGGGAGAGCGCC AGACTGAAGA chrVII:440522-440993 - 73 9.78e-10 GCGGATT TAGCTCAGTTGGGAGAGCGCC AGACTGAAGA chrXIII:352144-352419 + 56 9.78e-10 TAAGCGGATT TAGCTCAGTTGGGAGAGCGCC AGACTGAAGA chrVIII:237766-238117 - 21 9.78e-10 TAAGCGGATT TAGCTCAGTTGGGAGAGCGCC AGACTGAAGA chrXV:274491-274885 + 42 1.11e-09 CGTGTCCCAG TGGCCGAGTGGTTAAGGCGAT GCCCTGCTAT chrXII:656837-657178 - 22 1.11e-09 ATTGGGCGTG TGGCGTAGTCGGTAGCGCGCT CCCTTAGCAT chrVII:774198-774534 + 40 1.11e-09 ATTGGGCGTG TGGCGTAGTCGGTAGCGCGCT CCCTTAGCAT chrX:197199-197299 - 55 1.11e-09 TTAGGGCGTG TGGCGTAGTCGGTAGCGCGCT CCCTTAGCAT chrXI:517735-518229 + 63 1.11e-09 TATGGGCGTG TGGCGTAGTCGGTAGCGCGCT CCCTTAGCAT chrIV:1305477-1305805 + 46 2.26e-09 TAAGGCAACT TGGCCGAGTGGTTAAGGCGAA AGATTAGAAA chrXVI:581933-582229 + 38 2.26e-09 AGAGCCTTGT TGGCGCAATCGGTAGCGCGTA TGACTCTTAA chrIII:151140-151546 - 36 2.26e-09 AGAGCCTTGT TGGCGCAATCGGTAGCGCGTA TGACTCTTAA chrIV:980855-981196 - 53 2.26e-09 TGAGGCAACT TGGCCGAGTGGTTAAGGCGAA AGATTAGAAA chrIV:437632-437930 + 48 2.26e-09 TAAGGCAACT TGGCCGAGTGGTTAAGGCGAA AGATTAGAAA chrV:135338-135638 - 32 2.26e-09 AAAGCCTTGT TGGCGCAATCGGTAGCGCGTA TGACTCTTAA chrV:435649-435950 - 48 2.26e-09 AGAGCCTTGT TGGCGCAATCGGTAGCGCGTA TGACTCTTAA chrVI:226600-226913 - 27 2.26e-09 AATGCCTTGT TGGCGCAATCGGTAGCGCGTA TGACTCTTAA chrVII:876265-876542 + 48 2.26e-09 ATAGCCTTGT TGGCGCAATCGGTAGCGCGTA TGACTCTTAA chrXIII:480535-480809 - 44 2.26e-09 GTAGCCTTGT TGGCGCAATCGGTAGCGCGTA TGACTCTTAA chrIII:227815-228151 + 16 4.77e-09 AATGGCACTA TGGCCGAGTGGTTAAGGCGAG AGACTCGAAT chrVI:137312-137696 - 78 5.81e-09 CA TGGCCAAGTTGGTTAAGGCGT GCGACTGTTA chrXV:228171-228488 + 59 5.81e-09 TTAGACTCCA TGGCCAAGTTGGTTAAGGCGT GCGACTGTTA chrXVI:810561-810819 + 43 5.81e-09 TGCGACTCCA TGGCCAAGTTGGTTAAGGCGT GCGACTGTTA chrXI:74483-74780 + 50 5.81e-09 TTAGACTCCA TGGCCAAGTTGGTTAAGGCGT GCGACTGTTA chrXII:592442-592788 - 27 1.32e-08 AATGGGAGTT TGGCCGAGTGGTTTAAGGCGT CAGATTTAGG chrXV:976243-976625 + 44 1.56e-08 TGCGCTTCAG TAGCTCAGTAGGAAGAGCGTC AGTCTCATAA chrX:390955-391055 - 15 1.56e-08 AGTGCTTCAG TAGCTCAGTAGGAAGAGCGTC AGTCTCATAA chrIV:1175657-1176032 + 42 1.56e-08 AAAGCTTCAG TAGCTCAGTAGGAAGAGCGTC AGTCTCATAA chrX:422794-422894 + 46 1.56e-08 TATGCTTCAG TAGCTCAGTAGGAAGAGCGTC AGTCTCATAA chrIV:619879-620168 - 41 1.69e-08 TTGTTCCTCG TGGCCCAATGGTCACGGCGTC TGGCTACGAA chrV:492201-492582 - 56 1.69e-08 CTATTCCTCG TGGCCCAATGGTCACGGCGTC TGGCTACGAA chrXII:374167-374598 + 30 1.69e-08 TTGTTCCTCG TGGCCCAATGGTCACGGCGTC TGGCTACGAA chrX:424304-424404 - 50 8.27e-08 GATGGAGGGT TGGCCGAGTGGTCTAAGGCGG CAGACTTAAG chrXIV:725958-726517 - 3 8.27e-08 TTTGGAGGGT TGGCCGAGTGGTCTAAGGCGG CA chrVII:857310-857593 - 63 1.29e-07 AGTGGTTGTT TGGCCGAGCGGTCTAAGGCGC CTGATTCAAG chrI:180985-181365 + 23 1.29e-07 AGTGGTTGTT TGGCCGAGCGGTCTAAGGCGC CTGATTCAAG chrV:438568-438835 + 56 6.12e-07 TTAGGTTTCG TGGTCTAGTCGGTTATGGCAT CTGCTTAACA chrIV:488582-489063 - 71 7.81e-07 CCGGTCCAA TGGTCCAGTGGTTCAAGACGT CGCCTTTACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCCAGTBGGTARRGCGNY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:166135-166469 2.5e-11 21_[+1]_58 chrIV:434178-434446 3e-11 46_[-1]_33 chrVIII:115960-116355 3e-11 44_[-1]_35 chrXV:113684-113929 3e-11 52_[+1]_27 chrIII:295342-295736 3e-11 1_[+1]_78 chrX:59008-59108 3e-11 16_[-1]_63 chrXV:438482-438872 3.8e-10 22_[+1]_57 chrVII:115354-115694 3.8e-10 20_[+1]_59 chrXII:875210-875590 3.8e-10 32_[+1]_47 chrXVI:769022-769613 3.8e-10 7_[-1]_72 chrV:288285-288668 4.4e-10 70_[-1]_9 chrXIV:569772-570091 6.6e-10 31_[-1]_48 chrIX:183327-183679 6.6e-10 32_[-1]_47 chrIX:210479-210859 6.6e-10 52_[+1]_27 chrXVI:819343-819753 6.6e-10 37_[+1]_42 chrII:36261-36615 9.8e-10 16_[+1]_63 chrXVI:622447-622819 9.8e-10 20_[-1]_59 chrVII:440522-440993 9.8e-10 72_[-1]_7 chrXIII:352144-352419 9.8e-10 55_[+1]_24 chrVIII:237766-238117 9.8e-10 20_[-1]_59 chrXV:274491-274885 1.1e-09 41_[+1]_38 chrXII:656837-657178 1.1e-09 21_[-1]_58 chrVII:774198-774534 1.1e-09 39_[+1]_40 chrX:197199-197299 1.1e-09 54_[-1]_25 chrXI:517735-518229 1.1e-09 62_[+1]_17 chrIV:1305477-1305805 2.3e-09 45_[+1]_34 chrXVI:581933-582229 2.3e-09 37_[+1]_42 chrIII:151140-151546 2.3e-09 35_[-1]_44 chrIV:980855-981196 2.3e-09 52_[-1]_27 chrIV:437632-437930 2.3e-09 47_[+1]_32 chrV:135338-135638 2.3e-09 31_[-1]_48 chrV:435649-435950 2.3e-09 47_[-1]_32 chrVI:226600-226913 2.3e-09 26_[-1]_53 chrVII:876265-876542 2.3e-09 47_[+1]_32 chrXIII:480535-480809 2.3e-09 43_[-1]_36 chrIII:227815-228151 4.8e-09 15_[+1]_64 chrVI:137312-137696 5.8e-09 77_[-1]_2 chrXV:228171-228488 5.8e-09 58_[+1]_21 chrXVI:810561-810819 5.8e-09 42_[+1]_37 chrXI:74483-74780 5.8e-09 49_[+1]_30 chrXII:592442-592788 1.3e-08 26_[-1]_53 chrXV:976243-976625 1.6e-08 43_[+1]_36 chrX:390955-391055 1.6e-08 14_[-1]_65 chrIV:1175657-1176032 1.6e-08 41_[+1]_38 chrX:422794-422894 1.6e-08 45_[+1]_34 chrIV:619879-620168 1.7e-08 40_[-1]_39 chrV:492201-492582 1.7e-08 55_[-1]_24 chrXII:374167-374598 1.7e-08 29_[+1]_50 chrX:424304-424404 8.3e-08 49_[-1]_30 chrXIV:725958-726517 8.3e-08 2_[-1]_77 chrVII:857310-857593 1.3e-07 62_[-1]_17 chrI:180985-181365 1.3e-07 22_[+1]_57 chrV:438568-438835 6.1e-07 55_[+1]_24 chrIV:488582-489063 7.8e-07 70_[-1]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCCAGTBGGTARRGCGNY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCCCAGTBGGTARRGCGNY width=21 seqs=54 chrI:166135-166469 ( 22) TGGCGCAGTTGGTAGCGCGCT 1 chrIV:434178-434446 ( 47) TGGCCAAGTTGGTAAGGCGCC 1 chrVIII:115960-116355 ( 45) TGGCCAAGTTGGTAAGGCGCC 1 chrXV:113684-113929 ( 53) TGGCCAAGTTGGTAAGGCGCC 1 chrIII:295342-295736 ( 2) TGGCCAAGTTGGTAAGGCGCC 1 chrX:59008-59108 ( 17) TGGCCAAGTTGGTAAGGCGCC 1 chrXV:438482-438872 ( 23) TAGCTCAGTTGGTAGAGCGTT 1 chrVII:115354-115694 ( 21) TAGCTCAGTTGGTAGAGCGTT 1 chrXII:875210-875590 ( 33) TAGCTCAGTTGGTAGAGCGTT 1 chrXVI:769022-769613 ( 8) TAGCTCAGTTGGTAGAGCGTT 1 chrV:288285-288668 ( 71) TGGCCGAGTGGTTAAGGCGAC 1 chrXIV:569772-570091 ( 32) TGGCCCAGTTGGTTAAGGCAC 1 chrIX:183327-183679 ( 33) TGGCCCAGTTGGTTAAGGCAC 1 chrIX:210479-210859 ( 53) TGGCCCAGTTGGTTAAGGCAC 1 chrXVI:819343-819753 ( 38) TGGCCCAGTTGGTTAAGGCAC 1 chrII:36261-36615 ( 17) TAGCTCAGTTGGGAGAGCGCC 1 chrXVI:622447-622819 ( 21) TAGCTCAGTTGGGAGAGCGCC 1 chrVII:440522-440993 ( 73) TAGCTCAGTTGGGAGAGCGCC 1 chrXIII:352144-352419 ( 56) TAGCTCAGTTGGGAGAGCGCC 1 chrVIII:237766-238117 ( 21) TAGCTCAGTTGGGAGAGCGCC 1 chrXV:274491-274885 ( 42) TGGCCGAGTGGTTAAGGCGAT 1 chrXII:656837-657178 ( 22) TGGCGTAGTCGGTAGCGCGCT 1 chrVII:774198-774534 ( 40) TGGCGTAGTCGGTAGCGCGCT 1 chrX:197199-197299 ( 55) TGGCGTAGTCGGTAGCGCGCT 1 chrXI:517735-518229 ( 63) TGGCGTAGTCGGTAGCGCGCT 1 chrIV:1305477-1305805 ( 46) TGGCCGAGTGGTTAAGGCGAA 1 chrXVI:581933-582229 ( 38) TGGCGCAATCGGTAGCGCGTA 1 chrIII:151140-151546 ( 36) TGGCGCAATCGGTAGCGCGTA 1 chrIV:980855-981196 ( 53) TGGCCGAGTGGTTAAGGCGAA 1 chrIV:437632-437930 ( 48) TGGCCGAGTGGTTAAGGCGAA 1 chrV:135338-135638 ( 32) TGGCGCAATCGGTAGCGCGTA 1 chrV:435649-435950 ( 48) TGGCGCAATCGGTAGCGCGTA 1 chrVI:226600-226913 ( 27) TGGCGCAATCGGTAGCGCGTA 1 chrVII:876265-876542 ( 48) TGGCGCAATCGGTAGCGCGTA 1 chrXIII:480535-480809 ( 44) TGGCGCAATCGGTAGCGCGTA 1 chrIII:227815-228151 ( 16) TGGCCGAGTGGTTAAGGCGAG 1 chrVI:137312-137696 ( 78) TGGCCAAGTTGGTTAAGGCGT 1 chrXV:228171-228488 ( 59) TGGCCAAGTTGGTTAAGGCGT 1 chrXVI:810561-810819 ( 43) TGGCCAAGTTGGTTAAGGCGT 1 chrXI:74483-74780 ( 50) TGGCCAAGTTGGTTAAGGCGT 1 chrXII:592442-592788 ( 27) TGGCCGAGTGGTTTAAGGCGT 1 chrXV:976243-976625 ( 44) TAGCTCAGTAGGAAGAGCGTC 1 chrX:390955-391055 ( 15) TAGCTCAGTAGGAAGAGCGTC 1 chrIV:1175657-1176032 ( 42) TAGCTCAGTAGGAAGAGCGTC 1 chrX:422794-422894 ( 46) TAGCTCAGTAGGAAGAGCGTC 1 chrIV:619879-620168 ( 41) TGGCCCAATGGTCACGGCGTC 1 chrV:492201-492582 ( 56) TGGCCCAATGGTCACGGCGTC 1 chrXII:374167-374598 ( 30) TGGCCCAATGGTCACGGCGTC 1 chrX:424304-424404 ( 50) TGGCCGAGTGGTCTAAGGCGG 1 chrXIV:725958-726517 ( 3) TGGCCGAGTGGTCTAAGGCGG 1 chrVII:857310-857593 ( 63) TGGCCGAGCGGTCTAAGGCGC 1 chrI:180985-181365 ( 23) TGGCCGAGCGGTCTAAGGCGC 1 chrV:438568-438835 ( 56) TGGTCTAGTCGGTTATGGCAT 1 chrIV:488582-489063 ( 71) TGGTCCAGTGGTTCAAGACGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCCAGTBGGTARRGCGNY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 45280 bayes= 6.73751 E= 1.7e-165 -1240 -1240 -1240 173 -32 -1240 193 -1240 -1240 -1240 233 -1240 -1240 227 -1240 -302 -1240 143 16 -32 -85 143 3 -170 173 -1240 -1240 -1240 -70 -1240 203 -1240 -1240 -242 -1240 168 -202 16 48 50 -1240 -1240 233 -1240 -1240 -1240 186 -12 -202 -62 -110 123 126 -342 -1240 -22 68 -184 122 -1240 73 16 38 -402 -1240 -1240 233 -1240 -402 186 38 -1240 -1240 48 186 -1240 -56 48 -10 15 -70 116 -184 6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCCAGTBGGTARRGCGNY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 54 E= 1.7e-165 0.000000 0.000000 0.000000 1.000000 0.240741 0.000000 0.759259 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.962963 0.000000 0.037037 0.000000 0.537037 0.222222 0.240741 0.166667 0.537037 0.203704 0.092593 1.000000 0.000000 0.000000 0.000000 0.185185 0.000000 0.814815 0.000000 0.000000 0.037037 0.000000 0.962963 0.074074 0.222222 0.277778 0.425926 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.722222 0.277778 0.074074 0.129630 0.092593 0.703704 0.722222 0.018519 0.000000 0.259259 0.481481 0.055556 0.462963 0.000000 0.500000 0.222222 0.259259 0.018519 0.000000 0.000000 1.000000 0.000000 0.018519 0.722222 0.259259 0.000000 0.000000 0.277778 0.722222 0.000000 0.203704 0.277778 0.185185 0.333333 0.185185 0.444444 0.055556 0.314815 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCCAGTBGGTARRGCGNY MEME-1 regular expression -------------------------------------------------------------------------------- T[GA]GC[CTG][CG]AGT[TGC]G[GT]T[AT][AG][AGC]G[CG][GC][TCA][CT] -------------------------------------------------------------------------------- Time 328.16 secs. ******************************************************************************** ******************************************************************************** MOTIF SGGRVTCGAACCSVBGAYCTY MEME-2 width = 21 sites = 56 llr = 950 E-value = 7.9e-156 ******************************************************************************** -------------------------------------------------------------------------------- Motif SGGRVTCGAACCSVBGAYCTY MEME-2 Description -------------------------------------------------------------------------------- Simplified A 12:64:::aa:::3:26:::1 pos.-specific C 41::2:8:::a8532:16725 probability G 57a42::a:::144581121: matrix T ::::2a2::::11:3:24174 bits 2.3 * * * 2.1 * * * 1.9 * * * 1.6 * * **** Relative 1.4 * ****** * Entropy 1.2 * ******* * (24.5 bits) 0.9 **** ******* * ** 0.7 **** ******** * **** 0.5 **** *********** **** 0.2 **** **************** 0.0 --------------------- Multilevel GGGAATCGAACCCGGGACCTC consensus C GC T GATA T CT sequence G CC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRVTCGAACCSVBGAYCTY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIV:631747-632057 + 4 7.94e-14 GCC GGGACTCGAACCCGGGACCTC CCGCACCCTA chrI:166135-166469 - 57 4.11e-11 TGGACGCAAC CGGAATCGAACCGATGACCTC TTCCTTGCAA chrV:311755-312264 + 74 4.11e-11 TGGACGCAAC CGGAATCGAACCGATGACCTC TTCCTT chrVIII:388807-389040 + 30 2.50e-10 GGGGCGAGCT GGGAATTGAACCCAGGGCCTC TCGCATGCTT chrXV:980557-980990 - 34 2.50e-10 GGGGCGAGCT GGGAATTGAACCCAGGGCCTC TCGCATGCTT chrVII:774198-774534 - 75 2.98e-10 GAGTC CGGAATCGAACCGGAGACCTC TCCCATGCTA chrX:197199-197299 + 20 2.98e-10 TGGACGAGTC CGGAATCGAACCGGAGACCTC TCCCATGCTA chrXVI:819343-819753 - 74 4.61e-10 CTCTAG CGGGATCGAACCGCTGATCCC CGCGTTATTA chrXVI:581933-582229 - 73 7.68e-10 CCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrIII:151140-151546 + 1 7.68e-10 . GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrV:435649-435950 + 13 7.68e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrXIII:480535-480809 + 9 7.68e-10 CCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrXVI:860214-860636 - 44 9.04e-10 TGCGCAAGCC CGGAATCGAACCGGGGGCCCA ACGATGGCAA chrVII:845478-845852 - 74 9.04e-10 CAAGCC CGGAATCGAACCGGGGGCCCA ACGATGGCAA chrXIII:183723-184044 + 75 9.04e-10 TGCGCAAGCC CGGAATCGAACCGGGGGCCCA ACGAT chrX:531670-531770 - 35 9.04e-10 TGCGCAAGCC CGGAATCGAACCGGGGGCCCA ACGATGGCAA chrXVI:572125-572508 - 43 9.04e-10 TGCGCAAGCC CGGAATCGAACCGGGGGCCCA ACGATGGCAA chrVII:779475-779812 - 64 1.15e-09 TGAGCGGTAC GAGAATCGAACCCGTGTCCCC ACCTTGGAAG chrIV:645025-645386 + 8 1.50e-09 TCCTACC CGGATTCGAACCGGGGTTGTC CGGATCAAAA chrVIII:134192-134534 - 49 1.50e-09 AGGTCCTACC CGGATTCGAACCGGGGTTGTC CGGATCAAAA chrXII:448454-448855 + 56 1.50e-09 AGGTCCTACC CGGATTCGAACCGGGGTTGTC CGGATCAAAA chrIV:802611-802962 + 5 1.50e-09 TACC CGGATTCGAACCGGGGTTGTC CGGATCAAAA chrV:487236-487529 + 9 2.15e-09 CCGATACG GGGAGTCGAACCCCGGTCTCC ACGGTGAAAG chrV:176934-177297 - 75 2.15e-09 ATACG GGGAGTCGAACCCCGGTCTCC ACGGTGAAAG chrXI:140809-141279 + 34 2.15e-09 CTCCGATACG GGGAGTCGAACCCCGGTCTCC ACGGTGAAAG chrVII:541716-542098 - 34 2.15e-09 CTCCGATACG GGGAGTCGAACCCCGGTCTCC ACGGTGAAAG chrVII:405395-405674 - 27 3.06e-09 CACTCACGAT GGGGGTCGAACCCATAATCTT CTGATTAGAA chrII:405693-406176 - 35 3.06e-09 CACTCACGAT GGGGGTCGAACCCATAATCTT CTGATTAGAA chrX:355223-355323 - 21 3.06e-09 CACTCACGAT GGGGGTCGAACCCATAATCTT CTGATTAGAA chrIV:434178-434446 + 12 3.91e-09 TGCTTCCAAT CGGATTTGAACCGATGATCTC CACATTACTA chrVIII:115960-116355 + 10 3.91e-09 GCTTCCAAT CGGATTTGAACCGATGATCTC CACATTACTA chrIII:295342-295736 - 37 3.91e-09 TGCTTCCAAT CGGATTTGAACCGATGATCTC CACATTACTA chrVII:115354-115694 - 79 5.42e-09 G GGGGCTCGAACCCCTGACATT TCGGTATCCT chrVII:823342-823666 - 71 1.23e-08 GATTTCGCC CAGGATCGAACTGGGGACGTT CTGCGTGTTA chrXI:308041-308359 + 4 1.23e-08 GCC CAGGATCGAACTGGGGACGTT CTGCGTGTTA chrXIII:372384-372591 + 18 1.23e-08 TGATTTCGCC CAGGATCGAACTGGGGACGTT CTGCGTGTTA chrXII:605165-605536 + 10 1.64e-08 GCTCGAGGT GGGGATTGAACCCACGACGGT CGCGTTGCTT chrVI:210497-210855 + 3 2.36e-08 GG GCGAGTCGAACGCCCGATCTC AAGATTTCGT chrXIII:168666-169101 - 20 2.36e-08 TCTCCCGGGG GCGAGTCGAACGCCCGATCTC AAGATTTCGT chrXV:288019-288566 - 8 2.36e-08 TCTCCCGGGG GCGAGTCGAACGCCCGATCTC AAGATTT chrII:36261-36615 - 70 3.68e-08 TGCGAATTCT GTGGATCGAACACAGGACCTC CAGATGACTT chrVII:440522-440993 + 19 3.68e-08 TGCGAATTCT GTGGATCGAACACAGGACCTC CAGATAACTT chrXIII:667174-667473 + 60 4.32e-08 CGCTCCAGGG CAGAATCGAACCACGGCCCTC GTATAAGCCG chrIV:619879-620168 + 6 5.52e-08 CCGCC AGGACTTGAACCTGGAATCTT CTGGTTCGTA chrV:492201-492582 + 21 5.52e-08 CTTCCCCGCC AGGACTTGAACCTGGAATCTT CTGGTTCGTA chrXII:374167-374598 - 65 5.52e-08 CTTCCCCGCC AGGACTTGAACCTGGAATCTT CTGGTTCGTA chrVI:137312-137696 + 42 7.00e-08 CGACCCCAGT GAGGGTTGAACTCACGATCTT GCGATTAACA chrVII:878558-878971 + 6 7.00e-08 CGGAC AGGAATTGAACCTGCAACCCT TCGATTGCAA chrXVI:810561-810819 - 79 7.00e-08 T GAGGGTTGAACTCACGATCTT GCGATTAACA chrXIV:102519-103087 - 6 7.00e-08 CGACCCCAGT GAGGGTTGAACTCACGATCTT GCGAT chrXII:818466-818809 - 63 8.13e-08 AGCTCCTCCC GGGACTCGAACCCGGATCACA GCCACCGGAA chrXV:976243-976625 - 79 1.02e-07 G GAGGTTCGAACTCTCGACCTT CAGATTATGA chrIV:1175657-1176032 - 77 1.02e-07 GGG GAGGTTCGAACTCTCGACCTT CAGATTATGA chrIV:980855-981196 + 9 3.72e-07 ACAACTGC AGGACTCGAACCTGCGCGGGC AAAGCCCAAA chrVIII:132888-133166 + 59 3.72e-07 CGACAACTGC AGGACTCGAACCTGCGCGGGC AAAGCCCAAA chrI:182450-182613 + 51 3.72e-07 CGACAACTGC AGGACTCGAACCTGCGCGGGC AAAGCCCAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRVTCGAACCSVBGAYCTY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:631747-632057 7.9e-14 3_[+2]_76 chrI:166135-166469 4.1e-11 56_[-2]_23 chrV:311755-312264 4.1e-11 73_[+2]_6 chrVIII:388807-389040 2.5e-10 29_[+2]_50 chrXV:980557-980990 2.5e-10 33_[-2]_46 chrVII:774198-774534 3e-10 74_[-2]_5 chrX:197199-197299 3e-10 19_[+2]_60 chrXVI:819343-819753 4.6e-10 73_[-2]_6 chrXVI:581933-582229 7.7e-10 72_[-2]_7 chrIII:151140-151546 7.7e-10 [+2]_79 chrV:435649-435950 7.7e-10 12_[+2]_67 chrXIII:480535-480809 7.7e-10 8_[+2]_71 chrXVI:860214-860636 9e-10 43_[-2]_36 chrVII:845478-845852 9e-10 73_[-2]_6 chrXIII:183723-184044 9e-10 74_[+2]_5 chrX:531670-531770 9e-10 34_[-2]_45 chrXVI:572125-572508 9e-10 42_[-2]_37 chrVII:779475-779812 1.1e-09 63_[-2]_16 chrIV:645025-645386 1.5e-09 7_[+2]_72 chrVIII:134192-134534 1.5e-09 48_[-2]_31 chrXII:448454-448855 1.5e-09 55_[+2]_24 chrIV:802611-802962 1.5e-09 4_[+2]_75 chrV:487236-487529 2.2e-09 8_[+2]_71 chrV:176934-177297 2.2e-09 74_[-2]_5 chrXI:140809-141279 2.2e-09 33_[+2]_46 chrVII:541716-542098 2.2e-09 33_[-2]_46 chrVII:405395-405674 3.1e-09 26_[-2]_53 chrII:405693-406176 3.1e-09 34_[-2]_45 chrX:355223-355323 3.1e-09 20_[-2]_59 chrIV:434178-434446 3.9e-09 11_[+2]_68 chrVIII:115960-116355 3.9e-09 9_[+2]_70 chrIII:295342-295736 3.9e-09 36_[-2]_43 chrVII:115354-115694 5.4e-09 78_[-2]_1 chrVII:823342-823666 1.2e-08 70_[-2]_9 chrXI:308041-308359 1.2e-08 3_[+2]_76 chrXIII:372384-372591 1.2e-08 17_[+2]_62 chrXII:605165-605536 1.6e-08 9_[+2]_70 chrVI:210497-210855 2.4e-08 2_[+2]_77 chrXIII:168666-169101 2.4e-08 19_[-2]_60 chrXV:288019-288566 2.4e-08 7_[-2]_72 chrII:36261-36615 3.7e-08 69_[-2]_10 chrVII:440522-440993 3.7e-08 18_[+2]_61 chrXIII:667174-667473 4.3e-08 59_[+2]_20 chrIV:619879-620168 5.5e-08 5_[+2]_74 chrV:492201-492582 5.5e-08 20_[+2]_59 chrXII:374167-374598 5.5e-08 64_[-2]_15 chrVI:137312-137696 7e-08 41_[+2]_38 chrVII:878558-878971 7e-08 5_[+2]_74 chrXVI:810561-810819 7e-08 78_[-2]_1 chrXIV:102519-103087 7e-08 5_[-2]_74 chrXII:818466-818809 8.1e-08 62_[-2]_17 chrXV:976243-976625 1e-07 78_[-2]_1 chrIV:1175657-1176032 1e-07 76_[-2]_3 chrIV:980855-981196 3.7e-07 8_[+2]_71 chrVIII:132888-133166 3.7e-07 58_[+2]_21 chrI:182450-182613 3.7e-07 50_[+2]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRVTCGAACCSVBGAYCTY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SGGRVTCGAACCSVBGAYCTY width=21 seqs=56 chrXIV:631747-632057 ( 4) GGGACTCGAACCCGGGACCTC 1 chrI:166135-166469 ( 57) CGGAATCGAACCGATGACCTC 1 chrV:311755-312264 ( 74) CGGAATCGAACCGATGACCTC 1 chrVIII:388807-389040 ( 30) GGGAATTGAACCCAGGGCCTC 1 chrXV:980557-980990 ( 34) GGGAATTGAACCCAGGGCCTC 1 chrVII:774198-774534 ( 75) CGGAATCGAACCGGAGACCTC 1 chrX:197199-197299 ( 20) CGGAATCGAACCGGAGACCTC 1 chrXVI:819343-819753 ( 74) CGGGATCGAACCGCTGATCCC 1 chrXVI:581933-582229 ( 73) GGGGCTCGAACCCCTAACCTT 1 chrIII:151140-151546 ( 1) GGGGCTCGAACCCCTAACCTT 1 chrV:435649-435950 ( 13) GGGGCTCGAACCCCTAACCTT 1 chrXIII:480535-480809 ( 9) GGGGCTCGAACCCCTAACCTT 1 chrXVI:860214-860636 ( 44) CGGAATCGAACCGGGGGCCCA 1 chrVII:845478-845852 ( 74) CGGAATCGAACCGGGGGCCCA 1 chrXIII:183723-184044 ( 75) CGGAATCGAACCGGGGGCCCA 1 chrX:531670-531770 ( 35) CGGAATCGAACCGGGGGCCCA 1 chrXVI:572125-572508 ( 43) CGGAATCGAACCGGGGGCCCA 1 chrVII:779475-779812 ( 64) GAGAATCGAACCCGTGTCCCC 1 chrIV:645025-645386 ( 8) CGGATTCGAACCGGGGTTGTC 1 chrVIII:134192-134534 ( 49) CGGATTCGAACCGGGGTTGTC 1 chrXII:448454-448855 ( 56) CGGATTCGAACCGGGGTTGTC 1 chrIV:802611-802962 ( 5) CGGATTCGAACCGGGGTTGTC 1 chrV:487236-487529 ( 9) GGGAGTCGAACCCCGGTCTCC 1 chrV:176934-177297 ( 75) GGGAGTCGAACCCCGGTCTCC 1 chrXI:140809-141279 ( 34) GGGAGTCGAACCCCGGTCTCC 1 chrVII:541716-542098 ( 34) GGGAGTCGAACCCCGGTCTCC 1 chrVII:405395-405674 ( 27) GGGGGTCGAACCCATAATCTT 1 chrII:405693-406176 ( 35) GGGGGTCGAACCCATAATCTT 1 chrX:355223-355323 ( 21) GGGGGTCGAACCCATAATCTT 1 chrIV:434178-434446 ( 12) CGGATTTGAACCGATGATCTC 1 chrVIII:115960-116355 ( 10) CGGATTTGAACCGATGATCTC 1 chrIII:295342-295736 ( 37) CGGATTTGAACCGATGATCTC 1 chrVII:115354-115694 ( 79) GGGGCTCGAACCCCTGACATT 1 chrVII:823342-823666 ( 71) CAGGATCGAACTGGGGACGTT 1 chrXI:308041-308359 ( 4) CAGGATCGAACTGGGGACGTT 1 chrXIII:372384-372591 ( 18) CAGGATCGAACTGGGGACGTT 1 chrXII:605165-605536 ( 10) GGGGATTGAACCCACGACGGT 1 chrVI:210497-210855 ( 3) GCGAGTCGAACGCCCGATCTC 1 chrXIII:168666-169101 ( 20) GCGAGTCGAACGCCCGATCTC 1 chrXV:288019-288566 ( 8) GCGAGTCGAACGCCCGATCTC 1 chrII:36261-36615 ( 70) GTGGATCGAACACAGGACCTC 1 chrVII:440522-440993 ( 19) GTGGATCGAACACAGGACCTC 1 chrXIII:667174-667473 ( 60) CAGAATCGAACCACGGCCCTC 1 chrIV:619879-620168 ( 6) AGGACTTGAACCTGGAATCTT 1 chrV:492201-492582 ( 21) AGGACTTGAACCTGGAATCTT 1 chrXII:374167-374598 ( 65) AGGACTTGAACCTGGAATCTT 1 chrVI:137312-137696 ( 42) GAGGGTTGAACTCACGATCTT 1 chrVII:878558-878971 ( 6) AGGAATTGAACCTGCAACCCT 1 chrXVI:810561-810819 ( 79) GAGGGTTGAACTCACGATCTT 1 chrXIV:102519-103087 ( 6) GAGGGTTGAACTCACGATCTT 1 chrXII:818466-818809 ( 63) GGGACTCGAACCCGGATCACA 1 chrXV:976243-976625 ( 79) GAGGTTCGAACTCTCGACCTT 1 chrIV:1175657-1176032 ( 77) GAGGTTCGAACTCTCGACCTT 1 chrIV:980855-981196 ( 9) AGGACTCGAACCTGCGCGGGC 1 chrVIII:132888-133166 ( 59) AGGACTCGAACCTGCGCGGGC 1 chrI:182450-182613 ( 51) AGGACTCGAACCTGCGCGGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRVTCGAACCSVBGAYCTY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 45280 bayes= 6.73613 E= 7.9e-156 -127 91 133 -1245 -75 -189 188 -307 -1245 -1245 233 -1245 109 -1245 84 -1245 32 22 22 -91 -1245 -1245 -1245 173 -1245 195 -1245 -37 -1245 -1245 233 -1245 173 -1245 -1245 -1245 173 -1245 -1245 -1245 -1245 233 -1245 -1245 -307 195 -189 -107 -407 133 84 -127 -8 33 111 -307 -307 22 122 -17 -49 -1245 198 -1245 105 -148 -67 -75 -1245 157 -189 25 -307 181 -2 -207 -1245 22 -148 121 -149 138 -1245 32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRVTCGAACCSVBGAYCTY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 56 E= 7.9e-156 0.125000 0.375000 0.500000 0.000000 0.178571 0.053571 0.732143 0.035714 0.000000 0.000000 1.000000 0.000000 0.642857 0.000000 0.357143 0.000000 0.375000 0.232143 0.232143 0.160714 0.000000 0.000000 0.000000 1.000000 0.000000 0.767857 0.000000 0.232143 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.035714 0.767857 0.053571 0.142857 0.017857 0.500000 0.357143 0.125000 0.285714 0.250000 0.428571 0.035714 0.035714 0.232143 0.464286 0.267857 0.214286 0.000000 0.785714 0.000000 0.625000 0.071429 0.125000 0.178571 0.000000 0.589286 0.053571 0.357143 0.035714 0.696429 0.196429 0.071429 0.000000 0.232143 0.071429 0.696429 0.107143 0.517857 0.000000 0.375000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRVTCGAACCSVBGAYCTY MEME-2 regular expression -------------------------------------------------------------------------------- [GC]GG[AG][ACG]T[CT]GAACC[CG][GAC][GTC][GA]A[CT]C[TC][CT] -------------------------------------------------------------------------------- Time 612.47 secs. ******************************************************************************** ******************************************************************************** MOTIF SAAARCSBDAWGTGATARCCRYTACACTAT MEME-3 width = 30 sites = 27 llr = 602 E-value = 1.0e-092 ******************************************************************************** -------------------------------------------------------------------------------- Motif SAAARCSBDAWGTGATARCCRYTACACTAT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 17586::13742:17:97::7:2719::a1 pos.-specific C 4122:752112:2:3:::8a:4:28:a::1 probability G 522:434332:8:8:213::3::1:::::2 matrix T ::1::::32:4:81:8::2::68:11:a:6 bits 2.3 * * 2.1 * * 1.9 * * 1.6 ** *** Relative 1.4 * * * ** **** Entropy 1.2 * ** ****** ** ***** (32.2 bits) 0.9 * **** ****************** 0.7 ** **** * ****************** 0.5 ** **** * ****************** 0.2 ******* ********************* 0.0 ------------------------------ Multilevel GAAAACCTAAAGTGATAACCATTACACTAT consensus CGG GGGGG TA C G GC G sequence CT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAAARCSBDAWGTGATARCCRYTACACTAT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrII:350682-350966 - 59 6.32e-16 TTGTCCGGAT CAAAACCGAAAGTGATAACCACTACACTAT AAAACCCTTT chrIV:645025-645386 + 34 6.32e-16 TTGTCCGGAT CAAAACCGAAAGTGATAACCACTACACTAT AGGACCGTAA chrV:131020-131297 + 10 6.32e-16 TGTTCGGAT CAAAACCGAAAGTGATAACCACTACACTAT AAAACCTCTT chrVIII:134192-134534 - 14 6.32e-16 TTGTCCGGAT CAAAACCGAAAGTGATAACCACTACACTAT AGGACCGGAA chrIV:802611-802962 + 31 6.32e-16 TTGTCCGGAT CAAAACCGAAAGTGATAACCACTACACTAT AGGACCGACA chrIX:370244-370567 - 68 1.75e-15 GGT GAAAGCGTGATGTGATAGCCGTTACACTAT ATCGGATTAT chrV:487236-487529 + 35 1.75e-15 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTAT ATCGGATTAA chrV:176934-177297 - 40 1.75e-15 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTAT ATCGGATCAA chrX:115827-115927 + 14 1.75e-15 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTAT ATCGGATTAT chrXI:140809-141279 + 60 1.75e-15 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTAT ATCGGATTAC chrXVI:210104-210421 + 16 1.75e-15 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTAT ATCGGACAAT chrXIII:290634-290972 - 54 1.75e-15 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTAT ATCGGATTAT chrIX:197428-197752 - 58 1.89e-13 TCTCCACGGT GAGAACGTGATGTGATAGCCGTTACACTAC ATCGGATTTG chrVIII:475583-475969 + 17 1.31e-11 CCTTTGCCGT GTGAAGGCAACGTGATAGCCGCTACACTAT TGGAACAGAC chrVII:779475-779812 - 29 1.17e-10 TCCCCACCTT GGAAGGGTGGGATGATAACCACTACACTAA CCGCCCGGGG chrVIII:62588-62917 - 59 1.40e-09 TTTCATCGGC CACAACGATGTGTACTAACCACTATACTAA GATGGCATAT chrV:434448-434780 + 13 1.40e-09 TTTCATCGGC CACAACGATGTGTACTAACCACTATACTAA GATGGCGACT chrXV:571808-572087 - 67 1.97e-09 ACGC GACAAGCGCCCATTCTGACCATTAAACTAT CACGGATTTT chrX:541414-541514 - 34 1.97e-09 TCTGGCACGC GACAAGCGCCCATTCTGACCATTAAACTAT CACGGATTTT chrX:355223-355323 - 68 1.97e-09 CGC GACAAGCGCCCATTCTGACCATTAAACTAT CACGGAAGAA chrXIII:195954-196311 + 48 2.86e-09 TTAATCAGGA AGTCGCCCAAAGCGAGAATCATACCACTAG ACCACACGCC chrVI:101240-101553 - 41 2.86e-09 TTTTTCAGGA AGTCGCCCAAAGCGAGAATCATACCACTAG ACCACACGCC chrI:139009-139332 - 43 2.86e-09 TTATTCAGGA AGTCGCCCAAAGCGAGAATCATACCACTAG ACCACACGCC chrXII:818466-818809 - 28 3.17e-09 TCACAGCCAC CGGAAGAATGCATGCTAACCATTGCACTAG AGGAGCATAA chrXIV:631747-632057 + 25 5.89e-09 CCGGGACCTC CCGCACCCTAAGCGAGAATCATACCTCTAG ACCACACGCC chrIII:123474-123820 + 11 5.89e-09 CCGGGACCTC CCGCACCCTAAGCGAGAATCATACCTCTAG ACCACACGCC chrIV:1256920-1257241 + 14 2.16e-08 CCCCATGCTT GGGAAGCATGAATTCTAACCACTGAACCAC TTTCGCTAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAAARCSBDAWGTGATARCCRYTACACTAT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:350682-350966 6.3e-16 58_[-3]_12 chrIV:645025-645386 6.3e-16 33_[+3]_37 chrV:131020-131297 6.3e-16 9_[+3]_61 chrVIII:134192-134534 6.3e-16 13_[-3]_57 chrIV:802611-802962 6.3e-16 30_[+3]_40 chrIX:370244-370567 1.7e-15 67_[-3]_3 chrV:487236-487529 1.7e-15 34_[+3]_36 chrV:176934-177297 1.7e-15 39_[-3]_31 chrX:115827-115927 1.7e-15 13_[+3]_57 chrXI:140809-141279 1.7e-15 59_[+3]_11 chrXVI:210104-210421 1.7e-15 15_[+3]_55 chrXIII:290634-290972 1.7e-15 53_[-3]_17 chrIX:197428-197752 1.9e-13 57_[-3]_13 chrVIII:475583-475969 1.3e-11 16_[+3]_54 chrVII:779475-779812 1.2e-10 28_[-3]_42 chrVIII:62588-62917 1.4e-09 58_[-3]_12 chrV:434448-434780 1.4e-09 12_[+3]_58 chrXV:571808-572087 2e-09 66_[-3]_4 chrX:541414-541514 2e-09 33_[-3]_37 chrX:355223-355323 2e-09 67_[-3]_3 chrXIII:195954-196311 2.9e-09 47_[+3]_23 chrVI:101240-101553 2.9e-09 40_[-3]_30 chrI:139009-139332 2.9e-09 42_[-3]_28 chrXII:818466-818809 3.2e-09 27_[-3]_43 chrXIV:631747-632057 5.9e-09 24_[+3]_46 chrIII:123474-123820 5.9e-09 10_[+3]_60 chrIV:1256920-1257241 2.2e-08 13_[+3]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAAARCSBDAWGTGATARCCRYTACACTAT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SAAARCSBDAWGTGATARCCRYTACACTAT width=30 seqs=27 chrII:350682-350966 ( 59) CAAAACCGAAAGTGATAACCACTACACTAT 1 chrIV:645025-645386 ( 34) CAAAACCGAAAGTGATAACCACTACACTAT 1 chrV:131020-131297 ( 10) CAAAACCGAAAGTGATAACCACTACACTAT 1 chrVIII:134192-134534 ( 14) CAAAACCGAAAGTGATAACCACTACACTAT 1 chrIV:802611-802962 ( 31) CAAAACCGAAAGTGATAACCACTACACTAT 1 chrIX:370244-370567 ( 68) GAAAGCGTGATGTGATAGCCGTTACACTAT 1 chrV:487236-487529 ( 35) GAAAGCGTGATGTGATAGCCGTTACACTAT 1 chrV:176934-177297 ( 40) GAAAGCGTGATGTGATAGCCGTTACACTAT 1 chrX:115827-115927 ( 14) GAAAGCGTGATGTGATAGCCGTTACACTAT 1 chrXI:140809-141279 ( 60) GAAAGCGTGATGTGATAGCCGTTACACTAT 1 chrXVI:210104-210421 ( 16) GAAAGCGTGATGTGATAGCCGTTACACTAT 1 chrXIII:290634-290972 ( 54) GAAAGCGTGATGTGATAGCCGTTACACTAT 1 chrIX:197428-197752 ( 58) GAGAACGTGATGTGATAGCCGTTACACTAC 1 chrVIII:475583-475969 ( 17) GTGAAGGCAACGTGATAGCCGCTACACTAT 1 chrVII:779475-779812 ( 29) GGAAGGGTGGGATGATAACCACTACACTAA 1 chrVIII:62588-62917 ( 59) CACAACGATGTGTACTAACCACTATACTAA 1 chrV:434448-434780 ( 13) CACAACGATGTGTACTAACCACTATACTAA 1 chrXV:571808-572087 ( 67) GACAAGCGCCCATTCTGACCATTAAACTAT 1 chrX:541414-541514 ( 34) GACAAGCGCCCATTCTGACCATTAAACTAT 1 chrX:355223-355323 ( 68) GACAAGCGCCCATTCTGACCATTAAACTAT 1 chrXIII:195954-196311 ( 48) AGTCGCCCAAAGCGAGAATCATACCACTAG 1 chrVI:101240-101553 ( 41) AGTCGCCCAAAGCGAGAATCATACCACTAG 1 chrI:139009-139332 ( 43) AGTCGCCCAAAGCGAGAATCATACCACTAG 1 chrXII:818466-818809 ( 28) CGGAAGAATGCATGCTAACCATTGCACTAG 1 chrXIV:631747-632057 ( 25) CCGCACCCTAAGCGAGAATCATACCTCTAG 1 chrIII:123474-123820 ( 11) CCGCACCCTAAGCGAGAATCATACCTCTAG 1 chrIV:1256920-1257241 ( 14) GGGAAGCATGAATTCTAACCACTGAACCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAAARCSBDAWGTGATARCCRYTACACTAT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 40186 bayes= 9.46964 E= 1.0e-092 -144 90 138 -1140 115 -142 16 -302 68 -10 16 -144 144 -10 -1140 -1140 98 -1140 103 -1140 -1140 190 38 -1140 -302 138 116 -1140 -102 16 57 15 15 -84 74 -44 122 -84 -10 -1140 44 -10 -242 30 -44 -1140 197 -1140 -1140 -10 -1140 144 -202 -1140 197 -102 130 38 -1140 -1140 -1140 -1140 -10 144 156 -1140 -84 -1140 115 -1140 74 -1140 -1140 203 -1140 -70 -1140 233 -1140 -1140 115 -1140 74 -1140 -1140 90 -1140 106 -70 -1140 -1140 144 130 -10 -142 -1140 -102 197 -1140 -202 162 -1140 -1140 -202 -1140 233 -1140 -1140 -1140 -242 -1140 168 173 -1140 -1140 -1140 -144 -142 16 98 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAAARCSBDAWGTGATARCCRYTACACTAT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 27 E= 1.0e-092 0.111111 0.370370 0.518519 0.000000 0.666667 0.074074 0.222222 0.037037 0.481481 0.185185 0.222222 0.111111 0.814815 0.185185 0.000000 0.000000 0.592593 0.000000 0.407407 0.000000 0.000000 0.740741 0.259259 0.000000 0.037037 0.518519 0.444444 0.000000 0.148148 0.222222 0.296296 0.333333 0.333333 0.111111 0.333333 0.222222 0.703704 0.111111 0.185185 0.000000 0.407407 0.185185 0.037037 0.370370 0.222222 0.000000 0.777778 0.000000 0.000000 0.185185 0.000000 0.814815 0.074074 0.000000 0.777778 0.148148 0.740741 0.259259 0.000000 0.000000 0.000000 0.000000 0.185185 0.814815 0.888889 0.000000 0.111111 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.814815 0.000000 0.185185 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.370370 0.000000 0.629630 0.185185 0.000000 0.000000 0.814815 0.740741 0.185185 0.074074 0.000000 0.148148 0.777778 0.000000 0.074074 0.925926 0.000000 0.000000 0.074074 0.000000 1.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.962963 1.000000 0.000000 0.000000 0.000000 0.111111 0.074074 0.222222 0.592593 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAAARCSBDAWGTGATARCCRYTACACTAT MEME-3 regular expression -------------------------------------------------------------------------------- [GC][AG][AG]A[AG][CG][CG][TGC][AGT]A[AT][GA]TG[AC]TA[AG]CC[AG][TC]TACACTA[TG] -------------------------------------------------------------------------------- Time 896.25 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVIII:475583-475969 2.22e-08 16_[+3(1.31e-11)]_54 chrXIV:302932-303559 7.42e-01 100 chrV:283510-283966 4.15e-01 100 chrIV:835831-836113 1.98e-01 100 chrIV:1236665-1236780 3.92e-01 100 chrXIV:725958-726517 1.30e-04 2_[-1(8.27e-08)]_77 chrXIV:442865-443276 2.57e-02 68_[-2(4.15e-05)]_11 chrXI:458596-459052 8.58e-01 100 chrVII:479882-480336 1.27e-01 100 chrVII:1050217-1050547 8.78e-02 100 chrXVI:645365-645672 7.23e-01 100 chrX:355223-355323 4.49e-12 20_[-2(3.06e-09)]_26_[-3(1.97e-09)]_\ 3 chrXVI:819343-819753 2.57e-12 37_[+1(6.61e-10)]_15_[-2(4.61e-10)]_\ 6 chrXIV:499744-500806 4.78e-01 100 chrIX:187265-187721 4.69e-01 100 chrXIII:267978-268278 8.38e-01 100 chrVI:224948-225146 4.83e-01 100 chrI:139009-139332 8.07e-07 42_[-3(2.86e-09)]_28 chrXV:160345-160801 8.54e-01 100 chrX:415874-415974 2.48e-01 100 chrIX:129976-130099 2.19e-01 100 chrX:422794-422894 4.42e-05 45_[+1(1.56e-08)]_34 chrVIII:382945-383405 8.02e-01 100 chrVII:365085-365302 1.35e-01 100 chrIV:1081104-1081560 7.83e-02 100 chrXI:517735-518229 1.04e-07 62_[+1(1.11e-09)]_17 chrXVI:213598-214054 3.32e-01 100 chrXI:38761-39217 2.53e-01 100 chrII:301375-301639 8.45e-01 100 chrI:68958-69414 4.96e-01 100 chrIV:355801-356103 2.77e-01 100 chrXII:932146-932440 3.74e-01 100 chrVI:55000-55455 1.18e-01 100 chrIX:138211-138979 5.29e-01 100 chrVIII:237766-238117 9.07e-06 20_[-1(9.78e-10)]_59 chrXIV:172604-173060 5.85e-01 100 chrXIV:529447-529827 1.88e-01 100 chrXIV:413612-414068 7.91e-01 100 chrI:141647-141939 9.46e-01 100 chrIII:30624-31080 9.92e-01 100 chrXVI:701815-702113 9.91e-01 100 chrXV:968134-968351 8.08e-02 36_[+1(7.57e-05)]_43 chrXIII:480535-480809 9.00e-13 8_[+2(7.68e-10)]_14_[-1(2.26e-09)]_\ 36 chrX:123114-123214 3.76e-01 100 chrXV:587838-588254 8.22e-01 100 chrXII:254114-254230 4.58e-01 100 chrIV:307955-308411 4.35e-01 100 chrXIII:887141-887597 1.06e-01 100 chrXIII:162089-162649 5.94e-01 100 chrVIII:48389-48845 6.39e-01 100 chrIV:579697-580498 4.49e-01 100 chrIII:149769-150104 1.71e-02 74_[-2(5.17e-05)]_5 chrIV:539068-539524 4.70e-01 100 chrVIII:121320-121776 8.07e-01 100 chrIII:177183-177655 1.71e-01 100 chrXVI:829154-829323 2.19e-01 100 chrXI:163648-163902 6.47e-01 100 chrXV:159459-160189 2.71e-01 100 chrXIV:350154-350610 3.17e-01 100 chrVI:101240-101553 8.07e-07 40_[-3(2.86e-09)]_30 chrIV:44128-44584 1.45e-01 100 chrI:182450-182613 1.90e-04 50_[+2(3.72e-07)]_29 chrV:53617-53791 9.30e-01 100 chrVII:987343-987633 1.32e-01 100 chrIX:127096-127577 9.24e-01 100 chrXIII:290634-290972 1.20e-11 53_[-3(1.75e-15)]_17 chrXI:74483-74780 3.29e-05 49_[+1(5.81e-09)]_30 chrVIII:122945-123401 8.22e-01 100 chrXII:95465-95921 4.73e-01 100 chrXIII:272305-272761 4.82e-01 100 chrVII:310940-311995 6.39e-01 100 chrXII:713279-713504 9.89e-01 100 chrVIII:555803-556259 5.35e-01 100 chrXII:637133-638363 6.69e-01 100 chrX:75431-75531 3.55e-01 100 chrIX:141530-142057 9.44e-01 100 chrIV:802611-802962 3.89e-18 4_[+2(1.50e-09)]_5_[+3(6.32e-16)]_6_\ [-2(9.48e-05)]_13 chrIX:69127-69583 6.61e-01 100 chrXV:989089-989608 5.66e-02 100 chrXIII:119174-119630 6.34e-01 100 chrVIII:34523-35223 3.44e-01 100 chrXV:620009-620465 9.30e-01 100 chrXIII:352144-352419 3.26e-06 55_[+1(9.78e-10)]_24 chrXII:514180-514636 7.41e-01 100 chrXV:925187-925435 3.69e-01 100 chrVIII:17168-17374 3.54e-01 100 chrXII:837828-838123 9.22e-01 100 chrVIII:105371-105567 7.87e-01 100 chrXV:93360-93919 1.65e-01 100 chrVIII:451325-452892 4.22e-01 100 chrIV:976157-976473 3.42e-01 100 chrXV:779784-781039 8.57e-02 100 chrXV:678498-678954 4.76e-01 100 chrXV:912363-912631 9.66e-01 100 chrXIII:556913-557369 5.12e-01 100 chrXII:781539-781790 9.71e-01 100 chrII:394990-395446 9.72e-01 100 chrVII:277877-278464 1.15e-01 100 chrIV:1443927-1444383 4.03e-01 100 chrVII:561500-561741 3.41e-01 100 chrVI:95541-95803 5.17e-01 100 chrXII:369309-370295 5.53e-01 100 chrIII:71374-72030 2.76e-01 100 chrXIII:296874-298854 9.89e-01 100 chrVI:75285-75741 4.86e-01 100 chrXII:374167-374598 3.39e-10 29_[+1(1.69e-08)]_14_[-2(5.52e-08)]_\ 15 chrXI:259149-260015 9.02e-01 100 chrXII:568193-568649 7.66e-01 100 chrXIII:220559-220770 8.61e-02 100 chrXIV:115963-116419 6.94e-02 100 chrXIV:332002-332458 9.47e-01 100 chrV:492201-492582 3.39e-10 20_[+2(5.52e-08)]_14_[-1(1.69e-08)]_\ 24 chrVIII:75018-75317 7.22e-01 100 chrX:663855-663955 3.46e-01 100 chrVII:541716-542098 6.40e-06 33_[-2(2.15e-09)]_46 chrXII:424246-424702 5.88e-01 100 chrII:373032-373488 3.51e-01 100 chrV:311755-312264 7.61e-07 73_[+2(4.11e-11)]_6 chrXVI:338758-339080 1.70e-01 100 chrIV:217678-218134 9.33e-01 100 chrVIII:35425-35975 4.52e-01 100 chrXV:161435-161891 3.27e-01 100 chrXIV:102519-103087 7.00e-05 5_[-2(7.00e-08)]_74 chrIV:488582-489063 3.14e-09 34_[+2(1.10e-08)]_15_[-1(7.81e-07)]_\ 9 chrXVI:435765-436108 1.07e-03 16_[+2(1.11e-05)]_63 chrII:191912-192434 9.18e-01 100 chrIV:1492092-1492548 7.31e-01 100 chrXII:232051-234080 2.34e-01 100 chrVIII:141791-142247 7.37e-01 100 chrXIII:626412-626949 1.00e+00 100 chrXVI:810561-810819 1.97e-09 42_[+1(5.81e-09)]_15_[-2(7.00e-08)]_\ 1 chrX:541414-541514 6.49e-09 33_[-3(1.97e-09)]_5_[-2(7.51e-06)]_\ 11 chrV:434740-435031 3.07e-02 100 chrII:405693-406176 5.74e-06 34_[-2(3.06e-09)]_45 chrXIV:351900-352305 2.16e-01 100 chrXV:759165-759621 9.09e-01 100 chrII:681112-681581 3.34e-01 100 chrX:59008-59108 4.90e-07 16_[-1(3.01e-11)]_63 chrXV:900223-900457 9.63e-01 100 chrVI:223331-223445 8.40e-02 100 chrXVI:210104-210421 5.64e-12 15_[+3(1.75e-15)]_55 chrV:498407-498609 1.54e-01 100 chrI:169683-170139 3.45e-01 100 chrV:51929-52179 9.64e-01 100 chrXVI:405166-405749 4.42e-01 100 chrIII:107247-107605 8.23e-01 100 chrXIII:302812-302983 5.66e-01 100 chrXIV:722489-722945 7.13e-01 100 chrIII:3963-4302 5.30e-01 100 chrIII:137909-138943 8.72e-01 100 chrIX:210479-210859 1.22e-06 52_[+1(6.61e-10)]_27 chrXIV:675795-676055 1.14e-01 100 chrXI:140809-141279 1.73e-17 33_[+2(2.15e-09)]_5_[+3(1.75e-15)]_\ 11 chrV:117660-118239 5.23e-01 100 chrVI:83869-84310 3.64e-01 100 chrIV:51381-51837 2.91e-01 100 chrIX:189887-190143 3.90e-01 100 chrXII:673538-673994 1.55e-01 16_[-2(7.71e-05)]_63 chrXI:261581-262140 1.17e-01 100 chrVII:914886-915167 7.54e-01 100 chrXI:463283-463839 2.10e-01 100 chrXV:444705-445811 3.30e-01 100 chrIX:255344-255462 2.41e-01 100 chrXIII:504880-505135 7.59e-03 20_[-2(4.15e-05)]_59 chrII:680301-680635 1.28e-01 10_[-1(8.48e-05)]_69 chrXVI:769022-769613 6.09e-06 7_[-1(3.79e-10)]_72 chrIV:1161649-1161875 2.67e-01 100 chrV:61249-61551 9.21e-01 100 chrIV:768361-768817 1.15e-01 60_[-1(9.77e-05)]_19 chrV:68005-68529 3.91e-01 100 chrX:703313-703413 9.37e-01 100 chrV:79009-79219 1.95e-01 100 chrXV:1028780-1029027 9.99e-01 100 chrXI:141717-142173 6.72e-01 100 chrXII:592442-592788 1.16e-04 26_[-1(1.32e-08)]_53 chrXV:109590-110017 2.88e-01 100 chrXII:605165-605536 1.08e-05 9_[+2(1.64e-08)]_70 chrVII:439353-439816 1.72e-01 100 chrVIII:75838-76294 5.04e-01 100 chrV:397663-397821 1.00e+00 100 chrVII:989956-990412 8.90e-01 100 chrIII:217044-217500 6.34e-01 100 chrXI:99758-99965 2.59e-01 100 chrXIII:159368-159824 2.62e-01 100 chrIV:45679-45817 4.57e-01 100 chrV:225431-225728 3.30e-01 100 chrXIII:163704-164160 3.53e-01 100 chrXII:639524-640225 9.80e-01 100 chrVII:598182-598638 4.14e-01 100 chrIV:1443820-1444068 8.92e-01 100 chrV:267665-268121 7.62e-02 100 chrXI:334380-334630 4.18e-01 100 chrXV:908663-908900 6.90e-01 100 chrVIII:105014-105470 2.61e-01 100 chrXII:838032-839138 3.49e-02 100 chrXIV:301896-302352 3.71e-02 100 chrIV:1359460-1359742 7.69e-01 100 chrI:166135-166469 9.86e-17 21_[+1(2.54e-11)]_14_[-2(4.11e-11)]_\ 23 chrVII:700506-701217 8.90e-01 100 chrXIV:575397-575674 7.29e-01 100 chrVII:405395-405674 1.20e-05 26_[-2(3.06e-09)]_53 chrIV:1402218-1402359 6.76e-01 100 chrXII:516018-516474 8.45e-01 100 chrV:302880-303336 2.31e-01 100 chrXII:875210-875590 3.42e-08 32_[+1(3.79e-10)]_47 chrVII:555456-555581 6.64e-01 100 chrXIV:585873-586463 9.92e-01 100 chrXI:109743-109918 6.94e-01 100 chrXII:370373-370964 2.24e-01 100 chrII:82209-82665 9.43e-01 100 chrXIV:229830-230105 8.85e-01 100 chrXI:383693-384149 5.83e-01 100 chrXII:1019056-1019260 4.62e-01 100 chrIX:324122-324441 4.92e-01 100 chrVII:480392-481295 6.36e-01 100 chrXVI:572125-572508 5.19e-08 9_[+1(2.05e-05)]_12_[-2(9.04e-10)]_\ 37 chrX:745072-745172 2.18e-02 59_[-3(2.14e-05)]_11 chrIX:183327-183679 7.94e-06 32_[-1(6.61e-10)]_47 chrVIII:375376-375726 2.31e-01 100 chrXII:950109-950446 6.52e-01 100 chrIV:794508-794932 7.66e-01 100 chrX:227743-227843 5.80e-01 100 chrXV:623834-624290 2.94e-01 100 chrXIV:716119-716529 7.64e-01 100 chrVIII:147443-147899 6.45e-01 100 chrXII:728175-728631 5.34e-01 100 chrXIV:569772-570091 7.94e-06 31_[-1(6.61e-10)]_48 chrVII:516112-516700 7.86e-02 100 chrIII:295342-295736 5.85e-13 1_[+1(3.01e-11)]_14_[-2(3.91e-09)]_\ 43 chrXIV:104657-105178 3.86e-01 100 chrX:383008-383108 1.00e-01 100 chrXVI:303415-304013 6.48e-01 100 chrII:408499-409045 4.24e-01 100 chrV:23598-23825 7.46e-02 100 chrXIII:652361-652944 4.30e-01 100 chrIX:23806-24262 3.56e-02 100 chrVIII:115163-115475 6.35e-01 100 chrXIII:159570-160026 4.78e-01 100 chrV:69041-69396 1.60e-02 100 chrIV:1164218-1164674 6.20e-02 100 chrXIII:372384-372591 3.05e-08 17_[+2(1.23e-08)]_15_[-1(6.12e-07)]_\ 26 chrI:142566-143164 4.89e-02 54_[-1(5.41e-05)]_25 chrXV:797994-798327 6.38e-02 52_[-1(4.34e-05)]_27 chrXIV:703217-703778 9.42e-01 100 chrXI:283822-284109 6.51e-01 100 chrXI:326322-327434 2.65e-01 100 chrVII:601095-601551 9.55e-01 100 chrXIII:661613-662057 9.94e-02 100 chrIII:142602-142936 2.79e-02 24_[-1(2.05e-05)]_55 chrV:42080-42536 3.29e-01 100 chrVI:40408-40864 4.01e-01 100 chrIII:1068-1455 4.23e-01 100 chrXIV:254086-254202 8.54e-01 100 chrXII:1027053-1027509 4.12e-01 100 chrVII:323769-324086 8.81e-01 100 chrII:642915-643194 1.07e-03 12_[+2(1.11e-05)]_67 chrXIV:110566-111095 8.52e-01 100 chrVII:807092-807276 9.22e-01 100 chrII:238234-238394 9.04e-01 100 chrVII:798882-799338 3.37e-01 100 chrX:120406-120506 7.59e-01 100 chrXV:228171-228488 6.60e-05 58_[+1(5.81e-09)]_21 chrXII:448454-448855 5.62e-06 55_[+2(1.50e-09)]_24 chrXIV:63165-63647 7.73e-01 100 chrXIV:721660-721839 7.30e-01 100 chrIV:541242-541903 8.14e-01 100 chrIII:69053-69509 2.47e-02 45_[-3(6.00e-05)]_25 chrX:121352-121452 9.93e-01 100 chrXII:97602-97787 9.95e-01 100 chrVI:64353-64809 2.86e-01 100 chrXII:954358-954814 1.75e-01 100 chrXVI:821804-822312 5.65e-01 100 chrV:438568-438835 5.13e-04 55_[+1(6.12e-07)]_24 chrVII:481375-482839 3.93e-01 100 chrXVI:718403-719067 2.51e-02 60_[+1(5.41e-05)]_19 chrVIII:554279-554622 9.78e-01 100 chrXIII:861186-861364 3.57e-01 100 chrXII:818466-818809 5.82e-11 27_[-3(3.17e-09)]_5_[-2(8.13e-08)]_\ 17 chrV:141017-141384 7.96e-01 100 chrVII:876265-876542 7.49e-07 47_[+1(2.26e-09)]_32 chrX:531670-531770 3.09e-08 1_[+1(2.05e-05)]_12_[-2(9.04e-10)]_\ 45 chrXIII:500148-500511 4.56e-01 100 chrVII:736175-736514 3.49e-02 100 chrXII:198813-199753 3.31e-01 100 chrVII:310583-310845 7.95e-01 100 chrXII:603629-603985 3.63e-01 100 chrVII:779475-779812 3.19e-13 28_[-3(1.17e-10)]_5_[-2(1.15e-09)]_\ 16 chrXIV:776709-777165 7.77e-02 100 chrXIII:379245-379563 2.19e-01 100 chrX:197199-197299 2.54e-14 19_[+2(2.98e-10)]_14_[-1(1.11e-09)]_\ 25 chrI:180985-181365 9.71e-04 22_[+1(1.29e-07)]_57 chrVII:557684-557951 6.05e-03 69_[+1(7.57e-05)]_10 chrVII:727565-727746 2.38e-01 100 chrVII:649072-649264 6.44e-01 100 chrII:392546-392737 9.38e-02 100 chrXII:366122-366417 7.03e-02 100 chrIV:1301761-1302217 8.68e-01 100 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chrII:350682-350966 1.42e-12 58_[-3(6.32e-16)]_12 chrXV:976243-976625 3.63e-09 43_[+1(1.56e-08)]_14_[-2(1.02e-07)]_\ 1 chrXV:724933-725389 9.09e-01 100 chrIII:151140-151546 9.00e-13 [+2(7.68e-10)]_14_[-1(2.26e-09)]_44 chrXVI:581933-582229 9.00e-13 37_[+1(2.26e-09)]_14_[-2(7.68e-10)]_\ 7 chrVII:706991-707212 6.81e-03 66_[+2(1.11e-05)]_13 chrIV:1270418-1270874 9.73e-01 100 chrXI:610968-611339 8.73e-01 100 chrVI:137312-137696 2.26e-09 41_[+2(7.00e-08)]_15_[-1(5.81e-09)]_\ 2 chrII:88880-89336 5.07e-01 100 chrXII:636903-637221 1.95e-01 100 chrXIII:732008-732464 8.28e-01 100 chrVII:98248-98704 5.69e-02 100 chrV:322485-322849 9.58e-01 100 chrIII:228778-229009 2.09e-01 100 chrXI:84020-84459 5.56e-05 25_[+1(4.51e-06)]_25_[-2(1.11e-05)]_\ 8 chrIX:394733-395157 6.88e-01 100 chrXIII:195954-196311 7.49e-07 47_[+3(2.86e-09)]_23 chrXIII:667174-667473 1.02e-05 59_[+2(4.32e-08)]_20 chrXII:1028203-1028659 8.11e-01 100 chrX:79480-79580 7.44e-01 100 chrXV:723074-723188 9.40e-02 100 chrIV:1305477-1305805 3.15e-05 45_[+1(2.26e-09)]_34 chrXIV:631747-632057 1.83e-15 3_[+2(7.94e-14)]_[+3(5.89e-09)]_46 chrX:73749-73849 4.09e-01 100 chrX:652203-652303 9.95e-02 14_[-3(6.58e-05)]_56 chrIV:619879-620168 3.39e-10 5_[+2(5.52e-08)]_14_[-1(1.69e-08)]_\ 39 chrVIII:146439-146794 9.91e-01 100 chrVII:287256-287624 5.36e-01 100 chrII:256491-256947 4.75e-01 100 chrXV:254470-254661 9.06e-01 100 chrV:138520-139008 9.78e-01 100 chrX:69029-69129 7.51e-01 100 chrXII:499389-499608 9.47e-01 100 chrXI:379616-379950 1.57e-01 100 chrXV:571808-572087 5.17e-07 66_[-3(1.97e-09)]_4 chrV:85105-85583 4.73e-01 100 chrIV:221268-221724 1.26e-01 100 chrXV:80894-81130 1.00e+00 100 chrXII:300350-300698 9.38e-02 100 chrVII:610919-611375 7.43e-01 100 chrXV:619211-619544 2.59e-01 100 chrXVI:694661-694813 2.03e-01 100 chrXVI:173645-173898 9.99e-01 100 chrXVI:693496-693952 1.87e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************