Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/AWRI1631--SRB8.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.013048
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/AWRI1631--SRB8.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.056104
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/AWRI1631--SRB8.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.069395
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.014719
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.065601
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/AWRI1631--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/background
Finished invoke:
  name: bg  status: 0  time: 0.011861
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 930.32926
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 69.334602
Invoking:
  centrimo -seqlen 410 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/AWRI1631--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.189915
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.255628
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/background -primary RAGRTCMBSGGTTCGAYYCCS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/AWRI1631--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.34599
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/background -primary BDTGGYBYAGTGGKTARVGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/AWRI1631--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.400487
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/background -primary RRTGTAYGGRTGTWW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/AWRI1631--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.281993
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/background -primary SAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/AWRI1631--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.313917
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/background -primary GGTASC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/AWRI1631--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.223951
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/background -primary GTGATAR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/AWRI1631--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.224384
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/background -primary CCTTAACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/AWRI1631--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.190935
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/background -primary CAASGATG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/AWRI1631--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.194064
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/background -primary CABACGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/AWRI1631--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.208268
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/background -primary CACTATAK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/AWRI1631--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.208782
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/background -primary CAAAGCAY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/AWRI1631--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.170759
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/background --motif RAGRTCMBSGGTTCGAYYCCS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/AWRI1631--SRB8.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.21259
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/background --motif BDTGGYBYAGTGGKTARVGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/AWRI1631--SRB8.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.211265
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/background --motif RRTGTAYGGRTGTWW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/AWRI1631--SRB8.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.204588
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/background --motif SAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/AWRI1631--SRB8.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.107336
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/background --motif GGTASC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/AWRI1631--SRB8.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.110002
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/background --motif GTGATAR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/AWRI1631--SRB8.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.123942
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/background --motif CCTTAACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/AWRI1631--SRB8.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.124299
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/background --motif CAASGATG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/AWRI1631--SRB8.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.126385
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/background --motif CABACGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/AWRI1631--SRB8.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.124328
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/background --motif CACTATAK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/AWRI1631--SRB8.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.123984
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/background --motif CAAAGCAY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/AWRI1631--SRB8.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.126176
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.154605
Done