******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIV:130576-130925 1.0000 100 chrVIII:122320-122730 1.0000 100 chrI:65879-66289 1.0000 100 chrX:204593-204693 1.0000 100 chrX:623166-623266 1.0000 100 chrXV:216296-216670 1.0000 100 chrXVI:435801-436119 1.0000 100 chrX:349241-349341 1.0000 100 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chrII:167976-168177 1.0000 100 chrXVI:280697-280912 1.0000 100 chrV:305818-306172 1.0000 100 chrXVI:642767-643177 1.0000 100 chrXV:28681-29091 1.0000 100 chrIV:1305473-1305807 1.0000 100 chrIV:45430-45840 1.0000 100 chrXIII:297902-298121 1.0000 100 chrXV:110822-111150 1.0000 100 chrVI:83530-83669 1.0000 100 chrI:71933-72179 1.0000 100 chrXV:832178-832652 1.0000 100 chrXV:619141-619551 1.0000 100 chrVIII:123593-124003 1.0000 100 chrXIV:374722-375044 1.0000 100 chrXII:710564-710974 1.0000 100 chrXV:161184-161348 1.0000 100 chrII:326677-327033 1.0000 100 chrXII:369576-370368 1.0000 100 chrXVI:699980-700353 1.0000 100 chrVII:310846-311099 1.0000 100 chrVII:405399-405707 1.0000 100 chrXII:921627-921975 1.0000 100 chrIV:1245640-1246050 1.0000 100 chrIV:580082-580282 1.0000 100 chrXII:639722-639824 1.0000 100 chrIX:183331-183680 1.0000 100 chrV:61686-62107 1.0000 100 chrXII:404359-404769 1.0000 100 chrIV:520814-521145 1.0000 100 chrXII:639533-639773 1.0000 100 chrVI:210517-210861 1.0000 100 chrIV:1256913-1257232 1.0000 100 chrIV:230484-230894 1.0000 100 chrXV:908774-909184 1.0000 100 chrXIV:569748-570111 1.0000 100 chrV:483147-483557 1.0000 100 chrXII:713152-713530 1.0000 100 chrXIII:296818-297137 1.0000 100 chrVII:806462-806577 1.0000 100 chrIV:1300961-1301266 1.0000 100 chrVII:857241-857634 1.0000 100 chrXVI:173006-173208 1.0000 100 chrX:58984-59084 1.0000 100 chrXII:1012174-1012311 1.0000 100 chrVII:786951-787361 1.0000 100 chrXV:931654-932064 1.0000 100 chrXVI:431812-432222 1.0000 100 chrXII:592420-592784 1.0000 100 chrXI:382184-382428 1.0000 100 chrXV:79790-80108 1.0000 100 chrIV:1238179-1238589 1.0000 100 chrIV:221878-222282 1.0000 100 chrIV:117216-117570 1.0000 100 chrVII:310540-310874 1.0000 100 chrII:642894-643223 1.0000 100 chrXVI:55910-56434 1.0000 100 chrVIII:134206-134523 1.0000 100 chrXV:487424-487630 1.0000 100 chrII:89648-89950 1.0000 100 chrVII:438610-438888 1.0000 100 chrXIV:303059-303354 1.0000 100 chrXIII:747810-748128 1.0000 100 chrXIV:525031-525240 1.0000 100 chrVII:1000401-1000590 1.0000 100 chrXII:523120-523530 1.0000 100 chrXII:731973-732283 1.0000 100 chrXV:226522-226848 1.0000 100 chrXII:728196-728606 1.0000 100 chrXVI:694845-695255 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 586 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 58600 N= 586 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.280 C 0.220 G 0.220 T 0.280 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SRB8/background): A 0.295 C 0.205 G 0.205 T 0.295 ******************************************************************************** ******************************************************************************** MOTIF RAGRTCMBSGGTTCGAYYCCS MEME-1 width = 21 sites = 79 llr = 1320 E-value = 1.2e-239 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAGRTCMBSGGTTCGAYYCCS MEME-1 Description -------------------------------------------------------------------------------- Simplified A 56243:4:12::::3a1:::1 pos.-specific C 111:17543::::a::34a75 probability G 3376::1358a:::7:2:::4 matrix T 2:1:73131::aa:::56:31 bits 2.3 * * * 2.1 * * * 1.8 **** * * 1.6 **** * * Relative 1.4 ******* * Entropy 1.1 * * ******* ** (24.1 bits) 0.9 * * ******* *** 0.7 ***** ******** **** 0.5 *************** **** 0.2 ********************* 0.0 --------------------- Multilevel AAGGTCCCGGGTTCGATTCCC consensus GG AATAGC A CC TG sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCMBSGGTTCGAYYCCS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrI:166136-166553 + 15 8.98e-11 TTGCAAGGAA GAGGTCATCGGTTCGATTCCG GTTGCGTCCA chrVII:122123-122492 + 54 1.92e-10 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrIV:1201589-1201984 + 56 1.92e-10 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrVII:185565-185942 - 21 1.92e-10 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrV:435640-435975 - 5 1.92e-10 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTAC chrXVI:581910-582272 + 63 1.92e-10 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrIV:1352379-1352658 - 8 1.92e-10 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGG chrIX:210490-210866 + 80 3.21e-10 TAATAACGCG GGGATCAGCGGTTCGATCCCG chrVII:738972-739343 + 58 3.21e-10 TAATAACGCG GGGATCAGCGGTTCGATCCCG CTAGAGACCA chrVIII:475607-475923 - 1 3.82e-10 TCACACGGCA AAGGTCCCGAGTTCGATCCTC chrIV:1075346-1075702 - 8 3.82e-10 TCACACGGCA AAGGTCCCGAGTTCGATCCTC GGTTGGA chrVII:405399-405707 + 8 5.22e-10 TAATCAG AAGATTATGGGTTCGACCCCC ATCGTGAGTG chrII:405708-406178 + 26 5.22e-10 TTCTAATCAG AAGATTATGGGTTCGACCCCC ATCGTGAGTG chrVII:736161-736543 + 79 5.22e-10 TTCTAATCAG AAGATTATGGGTTCGACCCCC A chrVII:828516-828963 - 44 5.22e-10 TTCTAATCAG AAGATTATGGGTTCGACCCCC ATCGTGAGTG chrV:138501-138882 + 66 5.22e-10 TTCTAATCAG AAGATTATGGGTTCGACCCCC ATCGTGAGTG chrXI:162321-162705 - 34 5.22e-10 TTCTAATCAG AAGATTATGGGTTCGACCCCC ATCGTGAGTG chrX:355207-355307 + 25 5.22e-10 TTCTAATCAG AAGATTATGGGTTCGACCCCC ATCGTGAGTG chrIV:568731-569164 + 26 5.22e-10 TTCTAATCAG AAGATTATGGGTTCGACCCCC ATCGTGAGTG chrXIII:131708-132046 - 8 5.22e-10 TTCTAATCAG AAGATTATGGGTTCGACCCCC ATCGTGA chrXV:110822-111150 - 36 6.15e-10 CTTCCAAGGT GGGGACACGGGTTCGATTCTC GTACCGCTCA chrVII:779466-779832 + 58 6.15e-10 CTTCCAAGGT GGGGACACGGGTTCGATTCTC GTACCGCTCA chrVIII:146079-146460 - 33 7.15e-10 TAGCATGGGA GAGGTCTCCGGTTCGATTCCG GACTCGTCCA chrXVI:856744-857089 + 78 7.15e-10 TAGCATGGGA GAGGTCTCCGGTTCGATTCCG GA chrVII:774189-774549 + 72 7.15e-10 TAGCATGGGA GAGGTCTCCGGTTCGATTCCG GACTCGTC chrX:197171-197271 - 47 7.15e-10 TAGCATGGGA GAGGTCTCCGGTTCGATTCCG GACTCGTCCA chrII:645009-645350 + 79 9.63e-10 CTTTCACCGT GGAGACCGGGGTTCGACTCCC C chrVII:541684-542087 + 56 9.63e-10 CTTTCACCGT GGAGACCGGGGTTCGACTCCC CGTATCGGAG chrXI:140806-141249 - 51 9.63e-10 CTTTCACCGT GGAGACCGGGGTTCGACTCCC CGTATCGGAG chrIV:1017102-1017417 - 8 9.63e-10 TTCTCACCGT GGAGACCGGGGTTCGACTCCC CGCTTCG chrVII:401452-401583 - 70 9.63e-10 CTTTCACCGT GGAGACCGGGGTTCGACTCCC CGTATCGGAG chrXIII:290645-290994 + 73 9.63e-10 CTTTCACCGT GGAGACCGGGGTTCGACTCCC CGTATCG chrXV:980558-980906 + 75 1.11e-09 AAGCATGCGA GAGGCCCTGGGTTCAATTCCC AGCTC chrV:61686-62107 - 54 1.47e-09 TTGCCATCGT TGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrIV:992686-993027 + 66 1.47e-09 TTGCCATCGT TGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrVI:180799-181194 - 38 1.47e-09 TTGCCATCGT TGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrXVI:860217-860632 + 45 1.47e-09 TTGCCATCGT TGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrIV:83404-83728 + 72 1.47e-09 TTGCCATCGT TGGGCCCCCGGTTCGATTCCG GGCTTGCG chrVII:845485-845877 + 58 1.47e-09 TTGCCATCGT TGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrIV:359434-359805 + 73 2.87e-09 AGGATACCGA AATGTCAGGGGTTCGAGCCCC CTATGAG chrXV:438496-438885 + 68 2.87e-09 AGGATACCGA AATGTCAGGGGTTCGAGCCCC CTATGAGGAG chrXI:578823-579226 + 56 2.87e-09 AGGATACCGA AATGTCAGGGGTTCGAGCCCC CTATGAGGAG chrIV:488552-489050 - 56 5.28e-09 TTACACGGCG AAGATCCCGAGTTCGAACCTC GGTTGGATCA chrX:58984-59084 - 1 9.31e-09 TAGTAATGTG GAGATCATCGGTTCAAATCCG chrVIII:115974-116345 - 8 9.31e-09 TAGTAATGTG GAGATCATCGGTTCAAATCCG ATTGGAA chrIII:295325-295792 + 18 9.31e-09 TAGTAATGTG GAGATCATCGGTTCAAATCCG ATTGGAAGCA chrXIV:104677-105041 + 38 9.31e-09 TAGTAATGTG GAGATCATCGGTTCAAATCCG ATTGGAAGCA chrXIV:560538-560844 - 62 9.31e-09 TAGTAATGTG GAGATCATCGGTTCAAATCCG ATTGGAAGCA chrVIII:134206-134523 + 48 1.04e-08 TTTTGATCCG GACAACCCCGGTTCGAATCCG GGTAGGACCT chrIV:645043-645378 - 3 1.04e-08 TTTTGATCCG GACAACCCCGGTTCGAATCCG GG chrXII:448510-448883 - 14 1.04e-08 TTTTGATCCG GACAACCCCGGTTCGAATCCG GGTAGGACCT chrXV:663704-664032 - 4 1.15e-08 TAACACGCAG AACGTCCCCAGTTCGATCCTG GGC chrXIII:372329-372612 - 35 1.15e-08 TAACACGCAG AACGTCCCCAGTTCGATCCTG GGCGAAATCA chrVII:823330-823698 + 61 1.15e-08 TAACACGCAG AACGTCCCCAGTTCGATCCTG GGCGAAATCA chrV:469314-469630 + 78 1.15e-08 TAACACGCAG AACGTCCCCAGTTCGATCCTG GG chrXIII:420368-420802 - 63 1.15e-08 TAACACGCAG AACGTCCCCAGTTCGATCCTG GGCGAAATCA chrXII:818465-818802 + 67 3.69e-08 TTCCGGTGGC TGTGATCCGGGTTCGAGTCCC GGGAGGAGCT chrXV:487424-487630 + 5 5.20e-08 TCGC AAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrXIV:102553-102943 + 61 5.20e-08 TGTTAATCGC AAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrXIV:632449-632779 + 78 5.20e-08 TGTTAATCGC AAGATCGTGAGTTCAACCCTC AC chrXII:374186-374610 + 49 1.40e-07 TACGAACCAG AAGATTCCAGGTTCAAGTCCT GGCGGGGAAG chrIV:619849-620192 - 9 1.40e-07 TACGAACCAG AAGATTCCAGGTTCAAGTCCT GGCGGGGA chrV:492213-492568 - 22 1.40e-07 TACGAACCAG AAGATTCCAGGTTCAAGTCCT GGCGGGGAAG chrVII:661578-662010 + 46 1.61e-07 TTGTAATGCA AAGGTCGTTAGTTCAATTCTG ACAGGTGGCA chrVII:1004076-1004400 + 69 1.61e-07 TTGTAATGCA AAGGTCGTTAGTTCAATTCTG ACAGGTGGCA chrXVI:55910-56434 - 57 1.84e-07 TTGCAATCGA AGGGTTGCAGGTTCAATTCCT GTCCGTTTCA chrVII:287201-287607 - 6 1.84e-07 TTGCAATCGA AGGGTTGCAGGTTCAATTCCT GTCCG chrIX:324188-324404 - 67 1.96e-07 TTGTCGCGTG CCAGATCGGGGTTCAATTCCC CGTCGCGGAG chrVII:544358-544810 - 53 1.96e-07 TTGTCGCGTG CCAGATCGGGGTTCAATTCCC CGTCGCGGAG chrX:541400-541500 + 68 1.96e-07 TTGTCGCGTG CCAGATCGGGGTTCAATTCCC CGTCGCGGAG chrX:204593-204693 + 60 1.96e-07 TTGTCGCGTG CCAGATCGGGGTTCAATTCCC CGTCGCGGAG chrIV:1175659-1176055 + 64 2.23e-07 TCATAATCTG AAGGTCGAGAGTTCGAACCTC CCCTGGAGCA chrXIII:168659-169108 + 20 2.23e-07 ACGAAATCTT GAGATCGGGCGTTCGACTCGC CCCCGGGAGA chrIV:946142-946576 + 61 2.23e-07 ACGAAATCTT GAGATCGGGCGTTCGACTCGC CCCCGGGAGA chrV:434401-434763 - 19 4.94e-07 TTGTGGCCGA TGAAACCCTGGTTCGATTCTA GGAGATGGCA chrXIII:362897-363284 + 65 4.94e-07 TTGTGGCCGA TGAAACCCTGGTTCGATTCTA GGAGATGGCA chrVII:110436-110827 - 54 4.94e-07 TTGTGGCCGA TGAAACCCTGGTTCGATTCTA GGAGATGGCA chrVII:319725-319981 + 19 4.94e-07 TTGTGGCCGA TGAAACCCTGGTTCGATTCTA GGAGATGGCA chrII:642894-643223 - 9 5.19e-07 TGCAAATCTG TTGGTCCTTAGTTCGATCCTG AGTGCGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCMBSGGTTCGAYYCCS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:166136-166553 9e-11 14_[+1]_65 chrVII:122123-122492 1.9e-10 53_[+1]_26 chrIV:1201589-1201984 1.9e-10 55_[+1]_24 chrVII:185565-185942 1.9e-10 20_[-1]_59 chrV:435640-435975 1.9e-10 4_[-1]_75 chrXVI:581910-582272 1.9e-10 62_[+1]_17 chrIV:1352379-1352658 1.9e-10 7_[-1]_72 chrIX:210490-210866 3.2e-10 79_[+1] chrVII:738972-739343 3.2e-10 57_[+1]_22 chrVIII:475607-475923 3.8e-10 [-1]_79 chrIV:1075346-1075702 3.8e-10 7_[-1]_72 chrVII:405399-405707 5.2e-10 7_[+1]_72 chrII:405708-406178 5.2e-10 25_[+1]_54 chrVII:736161-736543 5.2e-10 78_[+1]_1 chrVII:828516-828963 5.2e-10 43_[-1]_36 chrV:138501-138882 5.2e-10 65_[+1]_14 chrXI:162321-162705 5.2e-10 33_[-1]_46 chrX:355207-355307 5.2e-10 24_[+1]_55 chrIV:568731-569164 5.2e-10 25_[+1]_54 chrXIII:131708-132046 5.2e-10 7_[-1]_72 chrXV:110822-111150 6.2e-10 35_[-1]_44 chrVII:779466-779832 6.2e-10 57_[+1]_22 chrVIII:146079-146460 7.2e-10 32_[-1]_47 chrXVI:856744-857089 7.2e-10 77_[+1]_2 chrVII:774189-774549 7.2e-10 71_[+1]_8 chrX:197171-197271 7.2e-10 46_[-1]_33 chrII:645009-645350 9.6e-10 78_[+1]_1 chrVII:541684-542087 9.6e-10 55_[+1]_24 chrXI:140806-141249 9.6e-10 50_[-1]_29 chrIV:1017102-1017417 9.6e-10 7_[-1]_72 chrVII:401452-401583 9.6e-10 69_[-1]_10 chrXIII:290645-290994 9.6e-10 72_[+1]_7 chrXV:980558-980906 1.1e-09 74_[+1]_5 chrV:61686-62107 1.5e-09 53_[-1]_26 chrIV:992686-993027 1.5e-09 65_[+1]_14 chrVI:180799-181194 1.5e-09 37_[-1]_42 chrXVI:860217-860632 1.5e-09 44_[+1]_35 chrIV:83404-83728 1.5e-09 71_[+1]_8 chrVII:845485-845877 1.5e-09 57_[+1]_22 chrIV:359434-359805 2.9e-09 72_[+1]_7 chrXV:438496-438885 2.9e-09 67_[+1]_12 chrXI:578823-579226 2.9e-09 55_[+1]_24 chrIV:488552-489050 5.3e-09 55_[-1]_24 chrX:58984-59084 9.3e-09 [-1]_79 chrVIII:115974-116345 9.3e-09 7_[-1]_72 chrIII:295325-295792 9.3e-09 17_[+1]_62 chrXIV:104677-105041 9.3e-09 37_[+1]_42 chrXIV:560538-560844 9.3e-09 61_[-1]_18 chrVIII:134206-134523 1e-08 47_[+1]_32 chrIV:645043-645378 1e-08 2_[-1]_77 chrXII:448510-448883 1e-08 13_[-1]_66 chrXV:663704-664032 1.2e-08 3_[-1]_76 chrXIII:372329-372612 1.2e-08 34_[-1]_45 chrVII:823330-823698 1.2e-08 60_[+1]_19 chrV:469314-469630 1.2e-08 77_[+1]_2 chrXIII:420368-420802 1.2e-08 62_[-1]_17 chrXII:818465-818802 3.7e-08 66_[+1]_13 chrXV:487424-487630 5.2e-08 4_[+1]_75 chrXIV:102553-102943 5.2e-08 60_[+1]_19 chrXIV:632449-632779 5.2e-08 77_[+1]_2 chrXII:374186-374610 1.4e-07 48_[+1]_31 chrIV:619849-620192 1.4e-07 8_[-1]_71 chrV:492213-492568 1.4e-07 21_[-1]_58 chrVII:661578-662010 1.6e-07 45_[+1]_34 chrVII:1004076-1004400 1.6e-07 68_[+1]_11 chrXVI:55910-56434 1.8e-07 56_[-1]_23 chrVII:287201-287607 1.8e-07 5_[-1]_74 chrIX:324188-324404 2e-07 66_[-1]_13 chrVII:544358-544810 2e-07 52_[-1]_27 chrX:541400-541500 2e-07 67_[+1]_12 chrX:204593-204693 2e-07 59_[+1]_20 chrIV:1175659-1176055 2.2e-07 63_[+1]_16 chrXIII:168659-169108 2.2e-07 19_[+1]_60 chrIV:946142-946576 2.2e-07 60_[+1]_19 chrV:434401-434763 4.9e-07 18_[-1]_61 chrXIII:362897-363284 4.9e-07 64_[+1]_15 chrVII:110436-110827 4.9e-07 53_[-1]_26 chrVII:319725-319981 4.9e-07 18_[+1]_61 chrII:642894-643223 5.2e-07 8_[-1]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCMBSGGTTCGAYYCCS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAGRTCMBSGGTTCGAYYCCS width=21 seqs=79 chrI:166136-166553 ( 15) GAGGTCATCGGTTCGATTCCG 1 chrVII:122123-122492 ( 54) AAGGTTAGGGGTTCGAGCCCC 1 chrIV:1201589-1201984 ( 56) AAGGTTAGGGGTTCGAGCCCC 1 chrVII:185565-185942 ( 21) AAGGTTAGGGGTTCGAGCCCC 1 chrV:435640-435975 ( 5) AAGGTTAGGGGTTCGAGCCCC 1 chrXVI:581910-582272 ( 63) AAGGTTAGGGGTTCGAGCCCC 1 chrIV:1352379-1352658 ( 8) AAGGTTAGGGGTTCGAGCCCC 1 chrIX:210490-210866 ( 80) GGGATCAGCGGTTCGATCCCG 1 chrVII:738972-739343 ( 58) GGGATCAGCGGTTCGATCCCG 1 chrVIII:475607-475923 ( 1) AAGGTCCCGAGTTCGATCCTC 1 chrIV:1075346-1075702 ( 8) AAGGTCCCGAGTTCGATCCTC 1 chrVII:405399-405707 ( 8) AAGATTATGGGTTCGACCCCC 1 chrII:405708-406178 ( 26) AAGATTATGGGTTCGACCCCC 1 chrVII:736161-736543 ( 79) AAGATTATGGGTTCGACCCCC 1 chrVII:828516-828963 ( 44) AAGATTATGGGTTCGACCCCC 1 chrV:138501-138882 ( 66) AAGATTATGGGTTCGACCCCC 1 chrXI:162321-162705 ( 34) AAGATTATGGGTTCGACCCCC 1 chrX:355207-355307 ( 25) AAGATTATGGGTTCGACCCCC 1 chrIV:568731-569164 ( 26) AAGATTATGGGTTCGACCCCC 1 chrXIII:131708-132046 ( 8) AAGATTATGGGTTCGACCCCC 1 chrXV:110822-111150 ( 36) GGGGACACGGGTTCGATTCTC 1 chrVII:779466-779832 ( 58) GGGGACACGGGTTCGATTCTC 1 chrVIII:146079-146460 ( 33) GAGGTCTCCGGTTCGATTCCG 1 chrXVI:856744-857089 ( 78) GAGGTCTCCGGTTCGATTCCG 1 chrVII:774189-774549 ( 72) GAGGTCTCCGGTTCGATTCCG 1 chrX:197171-197271 ( 47) GAGGTCTCCGGTTCGATTCCG 1 chrII:645009-645350 ( 79) GGAGACCGGGGTTCGACTCCC 1 chrVII:541684-542087 ( 56) GGAGACCGGGGTTCGACTCCC 1 chrXI:140806-141249 ( 51) GGAGACCGGGGTTCGACTCCC 1 chrIV:1017102-1017417 ( 8) GGAGACCGGGGTTCGACTCCC 1 chrVII:401452-401583 ( 70) GGAGACCGGGGTTCGACTCCC 1 chrXIII:290645-290994 ( 73) GGAGACCGGGGTTCGACTCCC 1 chrXV:980558-980906 ( 75) GAGGCCCTGGGTTCAATTCCC 1 chrV:61686-62107 ( 54) TGGGCCCCCGGTTCGATTCCG 1 chrIV:992686-993027 ( 66) TGGGCCCCCGGTTCGATTCCG 1 chrVI:180799-181194 ( 38) TGGGCCCCCGGTTCGATTCCG 1 chrXVI:860217-860632 ( 45) TGGGCCCCCGGTTCGATTCCG 1 chrIV:83404-83728 ( 72) TGGGCCCCCGGTTCGATTCCG 1 chrVII:845485-845877 ( 58) TGGGCCCCCGGTTCGATTCCG 1 chrIV:359434-359805 ( 73) AATGTCAGGGGTTCGAGCCCC 1 chrXV:438496-438885 ( 68) AATGTCAGGGGTTCGAGCCCC 1 chrXI:578823-579226 ( 56) AATGTCAGGGGTTCGAGCCCC 1 chrIV:488552-489050 ( 56) AAGATCCCGAGTTCGAACCTC 1 chrX:58984-59084 ( 1) GAGATCATCGGTTCAAATCCG 1 chrVIII:115974-116345 ( 8) GAGATCATCGGTTCAAATCCG 1 chrIII:295325-295792 ( 18) GAGATCATCGGTTCAAATCCG 1 chrXIV:104677-105041 ( 38) GAGATCATCGGTTCAAATCCG 1 chrXIV:560538-560844 ( 62) GAGATCATCGGTTCAAATCCG 1 chrVIII:134206-134523 ( 48) GACAACCCCGGTTCGAATCCG 1 chrIV:645043-645378 ( 3) GACAACCCCGGTTCGAATCCG 1 chrXII:448510-448883 ( 14) GACAACCCCGGTTCGAATCCG 1 chrXV:663704-664032 ( 4) AACGTCCCCAGTTCGATCCTG 1 chrXIII:372329-372612 ( 35) AACGTCCCCAGTTCGATCCTG 1 chrVII:823330-823698 ( 61) AACGTCCCCAGTTCGATCCTG 1 chrV:469314-469630 ( 78) AACGTCCCCAGTTCGATCCTG 1 chrXIII:420368-420802 ( 63) AACGTCCCCAGTTCGATCCTG 1 chrXII:818465-818802 ( 67) TGTGATCCGGGTTCGAGTCCC 1 chrXV:487424-487630 ( 5) AAGATCGTGAGTTCAACCCTC 1 chrXIV:102553-102943 ( 61) AAGATCGTGAGTTCAACCCTC 1 chrXIV:632449-632779 ( 78) AAGATCGTGAGTTCAACCCTC 1 chrXII:374186-374610 ( 49) AAGATTCCAGGTTCAAGTCCT 1 chrIV:619849-620192 ( 9) AAGATTCCAGGTTCAAGTCCT 1 chrV:492213-492568 ( 22) AAGATTCCAGGTTCAAGTCCT 1 chrVII:661578-662010 ( 46) AAGGTCGTTAGTTCAATTCTG 1 chrVII:1004076-1004400 ( 69) AAGGTCGTTAGTTCAATTCTG 1 chrXVI:55910-56434 ( 57) AGGGTTGCAGGTTCAATTCCT 1 chrVII:287201-287607 ( 6) AGGGTTGCAGGTTCAATTCCT 1 chrIX:324188-324404 ( 67) CCAGATCGGGGTTCAATTCCC 1 chrVII:544358-544810 ( 53) CCAGATCGGGGTTCAATTCCC 1 chrX:541400-541500 ( 68) CCAGATCGGGGTTCAATTCCC 1 chrX:204593-204693 ( 60) CCAGATCGGGGTTCAATTCCC 1 chrIV:1175659-1176055 ( 64) AAGGTCGAGAGTTCGAACCTC 1 chrXIII:168659-169108 ( 20) GAGATCGGGCGTTCGACTCGC 1 chrIV:946142-946576 ( 61) GAGATCGGGCGTTCGACTCGC 1 chrV:434401-434763 ( 19) TGAAACCCTGGTTCGATTCTA 1 chrXIII:362897-363284 ( 65) TGAAACCCTGGTTCGATTCTA 1 chrVII:110436-110827 ( 54) TGAAACCCTGGTTCGATTCTA 1 chrVII:319725-319981 ( 19) TGAAACCCTGGTTCGATTCTA 1 chrII:642894-643223 ( 9) TTGGTCCTTAGTTCGATCCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCMBSGGTTCGAYYCCS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 46880 bayes= 10.6779 E= 1.2e-239 67 -202 68 -96 113 -202 50 -454 -73 -102 171 -254 46 -1295 154 -1295 -22 -121 -1295 116 -1295 174 -1295 10 27 119 -70 -254 -454 103 50 -8 -222 68 134 -173 -63 -302 194 -1295 -1295 -1295 228 -1295 -1295 -1295 -1295 176 -1295 -1295 -1295 176 -1295 228 -1295 -1295 -22 -1295 186 -1295 176 -1295 -1295 -1295 -122 30 -32 63 -1295 103 -1295 98 -1295 228 -1295 -1295 -1295 179 -302 -15 -254 134 84 -222 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCMBSGGTTCGAYYCCS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 79 E= 1.2e-239 0.468354 0.050633 0.329114 0.151899 0.645570 0.050633 0.291139 0.012658 0.177215 0.101266 0.670886 0.050633 0.405063 0.000000 0.594937 0.000000 0.253165 0.088608 0.000000 0.658228 0.000000 0.683544 0.000000 0.316456 0.354430 0.468354 0.126582 0.050633 0.012658 0.417722 0.291139 0.278481 0.063291 0.329114 0.518987 0.088608 0.189873 0.025316 0.784810 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.253165 0.000000 0.746835 0.000000 1.000000 0.000000 0.000000 0.000000 0.126582 0.253165 0.164557 0.455696 0.000000 0.417722 0.000000 0.582278 0.000000 1.000000 0.000000 0.000000 0.000000 0.708861 0.025316 0.265823 0.050633 0.518987 0.367089 0.063291 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCMBSGGTTCGAYYCCS MEME-1 regular expression -------------------------------------------------------------------------------- [AG][AG]G[GA][TA][CT][CA][CGT][GC]GGTTC[GA]A[TC][TC]C[CT][CG] -------------------------------------------------------------------------------- Time 335.56 secs. ******************************************************************************** ******************************************************************************** MOTIF BDTGGYBYAGTGGKTARVGSS MEME-2 width = 21 sites = 130 llr = 1598 E-value = 1.3e-208 ******************************************************************************** -------------------------------------------------------------------------------- Motif BDTGGYBYAGTGGKTARVGSS MEME-2 Description -------------------------------------------------------------------------------- Simplified A 12:3:::1a3::::36442:: pos.-specific C 4::::643::12:11:12153 probability G 24:7a:31:7:6a4:142534 matrix T 34a::435::92:56311122 bits 2.3 * * 2.1 * * 1.8 * * 1.6 * * * * Relative 1.4 * * *** * Entropy 1.1 **** *** * (17.7 bits) 0.9 **** *** * 0.7 **** ****** * 0.5 ***** ****** * *** 0.2 ********************* 0.0 --------------------- Multilevel CGTGGCCTAGTGGTTAAAGCG consensus TT A TGC A T GATGGAGC sequence GA T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTGGYBYAGTGGKTARVGSS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrIV:1305473-1305807 + 45 3.63e-10 ATTAAGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrV:86410-86782 + 63 3.63e-10 GTTCTGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:437612-437968 + 37 3.63e-10 AGTAAGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrX:523898-523998 - 34 3.63e-10 TTAAAGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXIII:259048-259387 - 47 3.63e-10 AGTATGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXII:167851-168182 - 34 3.63e-10 CATATGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXII:656845-657150 - 34 6.14e-10 AAATTGGGCG TGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrVIII:146079-146460 - 70 6.14e-10 TATCAGGGCG TGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrXVI:856744-857089 + 41 6.14e-10 GATTCGGGCG TGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrVII:774189-774549 + 35 6.14e-10 TAATTGGGCG TGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrIII:227785-228202 + 4 3.86e-09 CAC TATGGCCGAGTGGTTAAGGCG AGAGACTCGA chrXIV:569748-570111 - 36 7.14e-09 ACAGTGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrIX:183331-183680 - 33 7.14e-09 TTCCTGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXVI:819350-819731 + 44 7.14e-09 AGAATGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXVI:880182-880541 - 33 7.14e-09 ATAATGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrIX:210490-210866 + 42 7.14e-09 TATCTGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrVII:738972-739343 + 20 7.14e-09 AAATAGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXII:734662-734963 + 45 7.14e-09 AGTTTGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrIV:359434-359805 + 13 1.05e-08 ACTCATCCTT GTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXII:875207-875594 + 31 1.05e-08 ACTCATCCTT GTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXVI:769086-769490 - 39 1.05e-08 ACTCATCCTT GTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXV:438496-438885 + 8 1.05e-08 CATCCTT GTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXII:731973-732283 + 17 1.52e-08 ACAATGGGAG TTTGGCCGAGTGGTTTAAGGC GTCAGATTTA chrXII:592420-592784 - 42 1.52e-08 ACAATGGGAG TTTGGCCGAGTGGTTTAAGGC GTCAGATTTA chrXII:374186-374610 + 12 1.52e-08 TCTTGTTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrVII:876237-876559 + 51 1.52e-08 GAATAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrVI:226594-226926 - 25 1.52e-08 AAAATGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrVII:122123-122492 + 17 1.52e-08 AATTAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrIV:1201589-1201984 + 19 1.52e-08 AAATAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrX:233761-233861 + 66 1.52e-08 TCTTGTTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrVII:185565-185942 - 58 1.52e-08 AAATAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrIV:619849-620192 - 46 1.52e-08 TCTTGTTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrV:435640-435975 - 42 1.52e-08 TAAGAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrXVI:581910-582272 + 26 1.52e-08 AAAGAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrIV:1352379-1352658 - 45 1.52e-08 AAATAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrV:492213-492568 - 59 1.52e-08 TCCTATTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrX:58984-59084 - 38 6.86e-08 TAGAAGCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXV:113641-113970 + 52 6.86e-08 ATTTAGCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrVIII:115974-116345 - 45 6.86e-08 TTAGAGCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXIV:104677-105041 + 1 6.86e-08 . TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXIV:374722-375044 + 41 1.64e-07 AATAAGCGGA CTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrIV:1095269-1095604 - 50 1.64e-07 TGTTAGCGGA CTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXIV:102553-102943 + 23 1.88e-07 TATAAGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXIV:632449-632779 + 40 1.88e-07 AAAGTGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrVI:137394-137701 - 37 1.88e-07 TGACTGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrIII:127558-127889 + 48 1.88e-07 AAAATGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrX:378210-378310 + 55 2.15e-07 TAATAGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXV:663704-664032 - 42 2.15e-07 ATAGTGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXIII:372329-372612 - 73 2.15e-07 CTGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVII:823330-823698 + 23 2.15e-07 AGAGTGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXI:308052-308363 - 35 2.15e-07 TAAGTGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrV:469314-469630 + 40 2.15e-07 TAATTGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrII:36232-36592 + 41 3.17e-07 TGTAAGCGGA TTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXIII:352123-352448 + 50 3.17e-07 TATAAGCGGA TTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXV:226522-226848 - 21 4.57e-07 ATTCAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXV:282016-282328 + 47 4.57e-07 AAAGCGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrIV:992686-993027 + 31 4.57e-07 TGTGAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVI:180799-181194 - 73 4.57e-07 AAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVI:162070-162374 + 61 4.57e-07 AACAAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXVI:860217-860632 + 10 4.57e-07 ACAAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrIII:142617-142927 - 24 4.57e-07 TACTAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVII:845485-845877 + 23 4.57e-07 AACAAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXI:84047-84357 + 61 6.49e-07 TGTATGGAGG GTTGGCCGAGTGGTCTAATGC GGCAGACTTA chrIV:1256913-1257232 - 32 8.12e-07 TCTTAGCGAA AGTGGTTCAGTGGTTAGAATT CATGCTTCCC chrXIII:195968-196304 - 59 8.12e-07 CACAAGGGCG TGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrXII:92384-92791 + 16 8.12e-07 AATAAGGGCG TGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrVI:101224-101574 + 32 8.12e-07 AATTCGGGCG TGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrI:138989-139375 + 25 8.12e-07 AGTACGGGCG TGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrXV:980558-980906 + 6 8.12e-07 GGGCG TGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrXIV:567979-568301 + 30 8.12e-07 TAATCGGGCG TGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrVII:857241-857634 - 79 9.06e-07 G TTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrVII:422937-423317 + 20 9.06e-07 TAAGTGGTTG TTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrXII:628217-628602 + 29 9.06e-07 TAAGTGGTTG TTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrXIV:442854-443241 + 14 9.06e-07 TAAGTGGTTG TTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrIV:1175659-1176055 + 27 1.24e-06 ACAAAGCTTC AGTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrXV:976261-976598 + 47 1.24e-06 TGTGCGCTTC AGTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrX:390930-391030 - 33 1.24e-06 ATAGTGCTTC AGTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrXIII:747810-748128 - 19 2.04e-06 GACTAGCTCG CGTGGCGTAATGGCAACGCGT CTGACTTCTA chrVII:736161-736543 + 43 2.04e-06 CAATAGCTCG CGTGGCGTAATGGCAACGCGT CTGACTTCTA chrVII:828516-828963 - 80 2.04e-06 . CGTGGCGTAATGGCAACGCGT CTGACTTCTA chrV:138501-138882 + 30 2.04e-06 ATAATGCTCG CGTGGCGTAATGGCAACGCGT CTGACTTCTA chrXI:162321-162705 - 70 2.04e-06 TATTAGCTCG CGTGGCGTAATGGCAACGCGT CTGACTTCTA chrXIII:131708-132046 - 44 2.04e-06 ATTTAGCTCG CGTGGCGTAATGGCAACGCGT CTGACTTCTA chrVIII:134206-134523 + 12 2.25e-06 GTTCCGGTCC TATAGTGTAGTGGTTATCACT TTCGGTTTTG chrIV:520814-521145 + 48 2.25e-06 TTTAGGGTCC TATAGTGTAGTGGTTATCACT TTCGGTTTTG chrXV:110822-111150 - 72 2.25e-06 CCCGGGCG GTTAGTGTAGTGGTTATCATC CCACCCTTCC chrV:131013-131306 - 19 2.25e-06 TAAGAGGTTT TATAGTGTAGTGGTTATCACT TTCGGTTTTG chrIII:168197-168548 - 25 2.25e-06 GTCCTGGTCC TATAGTGTAGTGGTTATCACT TTCGGTTTTG chrIV:645043-645378 - 39 2.25e-06 GTTACGGTCC TATAGTGTAGTGGTTATCACT TTCGGTTTTG chrXII:448510-448883 - 50 2.25e-06 GTTCCGGTCC TATAGTGTAGTGGTTATCACT TTCGGTTTTG chrVII:779466-779832 + 22 2.25e-06 ACCCCGGGCG GTTAGTGTAGTGGTTATCATC CCACCCTTCC chrVI:210517-210861 - 43 2.47e-06 AACGACTCTC GGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrX:354086-354186 + 30 2.47e-06 TATCACTCTC GGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrIV:946142-946576 + 8 2.47e-06 GACTCTC GGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrVII:661578-662010 + 10 2.47e-06 ATTTGCCTC CTTAGCTTAGTGGTAGAGCGT TGCACTTGTA chrVII:1004076-1004400 + 33 2.47e-06 GGTTTGCCTC CTTAGCTTAGTGGTAGAGCGT TGCACTTGTA chrVIII:466826-467143 + 61 2.47e-06 TTTTAGCCTC CTTAGCTTAGTGGTAGAGCGT TGCACTTGTA chrII:405708-406178 + 72 5.88e-06 TTTCTTCCGT GATAGTTTAATGGTCAGAATG GGCGCTTG chrX:355207-355307 + 71 5.88e-06 TTTCTTCCGT GATAGTTTAATGGTCAGAATG GGCGCTTGT chrVII:531476-531743 + 56 5.88e-06 TTACTTCCGT GATAGTTTAATGGTCAGAATG GGCGCTTGTC chrIV:568731-569164 + 72 5.88e-06 TTTCTTCCGT GATAGTTTAATGGTCAGAATG GGCGCTTG chrX:541400-541500 + 32 5.88e-06 GAAAATCCGT GATAGTTTAATGGTCAGAATG GGCGCTTGTC chrXV:571803-572108 + 58 5.88e-06 TAAAATCCGT GATAGTTTAATGGTCAGAATG GGCGCTTGTC chrX:204593-204693 + 24 5.88e-06 AAAAATCCGT GATAGTTTAATGGTCAGAATG GGCGCTTGTC chrVII:287201-287607 - 76 6.37e-06 AAGC GGTGGCTCAATGGTAGAGCTT TCGACTCCAA chrVII:878567-878983 - 65 6.37e-06 AAGATGAAGC GGTGGCTCAATGGTAGAGCTT TCGACTCCAA chrXIII:379223-379575 - 34 6.37e-06 AAGTTGAAGC GGTGGCTCAATGGTAGAGCTT TCGACTCCAA chrX:415829-415929 - 47 6.37e-06 AAGTTGAAGC GGTGGCTCAATGGTAGAGCTT TCGACTCCAA chrXII:108251-108661 - 8 7.47e-06 CTCCTCACGC CTTGGCTTAGTGAGTGGCCGG AGTTAAA chrXIII:251740-252150 - 40 8.07e-06 AAATGCTGCG GTTGGTTTAGTTGCTGGTGGT AAGTCCAAGT chrXV:710086-710342 + 42 1.09e-05 TTAGCAGCGC CGTGGCGCAGTGGAAGCGCGC AGGGCTCATA chrXIII:759238-759648 - 4 1.09e-05 TTTGCCGCTA CTTGGCGAAGATGGTTGAGCT GGG chrV:434401-434763 - 55 1.36e-05 AAGTCGCCAT CTTAGTATAGTGGTTAGTACA CATCGTTGTG chrXIII:362897-363284 + 29 1.36e-05 AGTTTGCCAT CTTAGTATAGTGGTTAGTACA CATCGTTGTG chrVIII:62580-62924 + 58 1.36e-05 CATATGCCAT CTTAGTATAGTGGTTAGTACA CATCGTTGTG chrXI:313305-313628 - 31 1.36e-05 TGTTTGCCAT CTTAGTATAGTGGTTAGTACA CATCGTTGTG chrII:642894-643223 - 45 1.57e-05 AGAAAGCTCG TATGGCGCAGTGGTAGCGCAG CAGATTGCAA chrXIII:69632-70042 + 39 1.57e-05 CTGAGGCACA TGTGGCGCCATCGTCATCACG ATTTCAACCA chrXVI:435801-436119 - 29 1.57e-05 CAAAAGCTCG TATGGCGCAGTGGTAGCGCAG CAGATTGCAA chrVIII:475607-475923 - 38 2.06e-05 AGTCTGTTCC AATAGTGTAGCGGCTATCACG TTGCCTTCAC chrXII:951367-951594 - 26 2.06e-05 AAGATGATAA TGTGGCTGAAGTGTTAGCAGC ATTAGACAAC chrIV:1075346-1075702 - 45 2.06e-05 ATATTGTTCC AATAGTGTAGCGGCTATCACG TTGCCTTCAC chrXV:619141-619551 - 63 2.20e-05 CTGAAAATGT TGTGGCACCGCGGCATGAGCG ATTCCGCGGA chrXII:818465-818802 + 31 2.20e-05 ATTATGCTCC TCTAGTGCAATGGTTAGCATG CATTCTTCCG chrI:71086-71496 - 6 2.35e-05 AAACGACCCA CGTGGCAGAGTTGGGTCAAGT GCCAG chrIX:197439-197745 + 55 6.27e-05 TCAAATCCGA TGTAGTGTAACGGCTATCACA TCACGTTCTC chrIV:1017102-1017417 - 44 6.27e-05 TACAATCCGA TGTAGTGTAACGGCTATCACA TCACGTTCTC chrXIV:525031-525240 - 21 9.22e-05 ACGTTATCCT TGTGACGTTGTTGCTATAGCG TAACGTGCGT chrXV:988194-988604 - 53 9.72e-05 GATCGCGCTG GGCGGCGCCATCGGTACCGGT TTGCTGGTGG chrXIII:296818-297137 - 27 2.94e-04 GTTCTAGATG TATGGGTGTGCGGGTAATGCT AAGATACGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTGGYBYAGTGGKTARVGSS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1305473-1305807 3.6e-10 44_[+2]_35 chrV:86410-86782 3.6e-10 62_[+2]_17 chrIV:437612-437968 3.6e-10 36_[+2]_43 chrX:523898-523998 3.6e-10 33_[-2]_46 chrXIII:259048-259387 3.6e-10 46_[-2]_33 chrXII:167851-168182 3.6e-10 33_[-2]_46 chrXII:656845-657150 6.1e-10 33_[-2]_46 chrVIII:146079-146460 6.1e-10 69_[-2]_10 chrXVI:856744-857089 6.1e-10 40_[+2]_39 chrVII:774189-774549 6.1e-10 34_[+2]_45 chrIII:227785-228202 3.9e-09 3_[+2]_76 chrXIV:569748-570111 7.1e-09 35_[-2]_44 chrIX:183331-183680 7.1e-09 32_[-2]_47 chrXVI:819350-819731 7.1e-09 43_[+2]_36 chrXVI:880182-880541 7.1e-09 32_[-2]_47 chrIX:210490-210866 7.1e-09 41_[+2]_38 chrVII:738972-739343 7.1e-09 19_[+2]_60 chrXII:734662-734963 7.1e-09 44_[+2]_35 chrIV:359434-359805 1.1e-08 12_[+2]_67 chrXII:875207-875594 1.1e-08 30_[+2]_49 chrXVI:769086-769490 1.1e-08 38_[-2]_41 chrXV:438496-438885 1.1e-08 7_[+2]_72 chrXII:731973-732283 1.5e-08 16_[+2]_63 chrXII:592420-592784 1.5e-08 41_[-2]_38 chrXII:374186-374610 1.5e-08 11_[+2]_68 chrVII:876237-876559 1.5e-08 50_[+2]_29 chrVI:226594-226926 1.5e-08 24_[-2]_55 chrVII:122123-122492 1.5e-08 16_[+2]_63 chrIV:1201589-1201984 1.5e-08 18_[+2]_61 chrX:233761-233861 1.5e-08 65_[+2]_14 chrVII:185565-185942 1.5e-08 57_[-2]_22 chrIV:619849-620192 1.5e-08 45_[-2]_34 chrV:435640-435975 1.5e-08 41_[-2]_38 chrXVI:581910-582272 1.5e-08 25_[+2]_54 chrIV:1352379-1352658 1.5e-08 44_[-2]_35 chrV:492213-492568 1.5e-08 58_[-2]_21 chrX:58984-59084 6.9e-08 37_[-2]_42 chrXV:113641-113970 6.9e-08 51_[+2]_28 chrVIII:115974-116345 6.9e-08 44_[-2]_35 chrXIV:104677-105041 6.9e-08 [+2]_79 chrXIV:374722-375044 1.6e-07 40_[+2]_39 chrIV:1095269-1095604 1.6e-07 49_[-2]_30 chrXIV:102553-102943 1.9e-07 22_[+2]_57 chrXIV:632449-632779 1.9e-07 39_[+2]_40 chrVI:137394-137701 1.9e-07 36_[-2]_43 chrIII:127558-127889 1.9e-07 47_[+2]_32 chrX:378210-378310 2.1e-07 54_[+2]_25 chrXV:663704-664032 2.1e-07 41_[-2]_38 chrXIII:372329-372612 2.1e-07 72_[-2]_7 chrVII:823330-823698 2.1e-07 22_[+2]_57 chrXI:308052-308363 2.1e-07 34_[-2]_45 chrV:469314-469630 2.1e-07 39_[+2]_40 chrII:36232-36592 3.2e-07 40_[+2]_39 chrXIII:352123-352448 3.2e-07 49_[+2]_30 chrXV:226522-226848 4.6e-07 20_[-2]_59 chrXV:282016-282328 4.6e-07 46_[+2]_33 chrIV:992686-993027 4.6e-07 30_[+2]_49 chrVI:180799-181194 4.6e-07 72_[-2]_7 chrVI:162070-162374 4.6e-07 60_[+2]_19 chrXVI:860217-860632 4.6e-07 9_[+2]_70 chrIII:142617-142927 4.6e-07 23_[-2]_56 chrVII:845485-845877 4.6e-07 22_[+2]_57 chrXI:84047-84357 6.5e-07 60_[+2]_19 chrIV:1256913-1257232 8.1e-07 31_[-2]_48 chrXIII:195968-196304 8.1e-07 58_[-2]_21 chrXII:92384-92791 8.1e-07 15_[+2]_64 chrVI:101224-101574 8.1e-07 31_[+2]_48 chrI:138989-139375 8.1e-07 24_[+2]_55 chrXV:980558-980906 8.1e-07 5_[+2]_74 chrXIV:567979-568301 8.1e-07 29_[+2]_50 chrVII:857241-857634 9.1e-07 78_[-2]_1 chrVII:422937-423317 9.1e-07 19_[+2]_60 chrXII:628217-628602 9.1e-07 28_[+2]_51 chrXIV:442854-443241 9.1e-07 13_[+2]_66 chrIV:1175659-1176055 1.2e-06 26_[+2]_53 chrXV:976261-976598 1.2e-06 46_[+2]_33 chrX:390930-391030 1.2e-06 32_[-2]_47 chrXIII:747810-748128 2e-06 18_[-2]_61 chrVII:736161-736543 2e-06 42_[+2]_37 chrVII:828516-828963 2e-06 79_[-2] chrV:138501-138882 2e-06 29_[+2]_50 chrXI:162321-162705 2e-06 69_[-2]_10 chrXIII:131708-132046 2e-06 43_[-2]_36 chrVIII:134206-134523 2.2e-06 11_[+2]_68 chrIV:520814-521145 2.2e-06 47_[+2]_32 chrXV:110822-111150 2.2e-06 71_[-2]_8 chrV:131013-131306 2.2e-06 18_[-2]_61 chrIII:168197-168548 2.2e-06 24_[-2]_55 chrIV:645043-645378 2.2e-06 38_[-2]_41 chrXII:448510-448883 2.2e-06 49_[-2]_30 chrVII:779466-779832 2.2e-06 21_[+2]_58 chrVI:210517-210861 2.5e-06 42_[-2]_37 chrX:354086-354186 2.5e-06 29_[+2]_50 chrIV:946142-946576 2.5e-06 7_[+2]_72 chrVII:661578-662010 2.5e-06 9_[+2]_70 chrVII:1004076-1004400 2.5e-06 32_[+2]_47 chrVIII:466826-467143 2.5e-06 60_[+2]_19 chrII:405708-406178 5.9e-06 71_[+2]_8 chrX:355207-355307 5.9e-06 70_[+2]_9 chrVII:531476-531743 5.9e-06 55_[+2]_24 chrIV:568731-569164 5.9e-06 71_[+2]_8 chrX:541400-541500 5.9e-06 31_[+2]_48 chrXV:571803-572108 5.9e-06 57_[+2]_22 chrX:204593-204693 5.9e-06 23_[+2]_56 chrVII:287201-287607 6.4e-06 75_[-2]_4 chrVII:878567-878983 6.4e-06 64_[-2]_15 chrXIII:379223-379575 6.4e-06 33_[-2]_46 chrX:415829-415929 6.4e-06 46_[-2]_33 chrXII:108251-108661 7.5e-06 7_[-2]_72 chrXIII:251740-252150 8.1e-06 39_[-2]_40 chrXV:710086-710342 1.1e-05 41_[+2]_38 chrXIII:759238-759648 1.1e-05 3_[-2]_76 chrV:434401-434763 1.4e-05 54_[-2]_25 chrXIII:362897-363284 1.4e-05 28_[+2]_51 chrVIII:62580-62924 1.4e-05 57_[+2]_22 chrXI:313305-313628 1.4e-05 30_[-2]_49 chrII:642894-643223 1.6e-05 44_[-2]_35 chrXIII:69632-70042 1.6e-05 38_[+2]_41 chrXVI:435801-436119 1.6e-05 28_[-2]_51 chrVIII:475607-475923 2.1e-05 37_[-2]_42 chrXII:951367-951594 2.1e-05 25_[-2]_54 chrIV:1075346-1075702 2.1e-05 44_[-2]_35 chrXV:619141-619551 2.2e-05 62_[-2]_17 chrXII:818465-818802 2.2e-05 30_[+2]_49 chrI:71086-71496 2.4e-05 5_[-2]_74 chrIX:197439-197745 6.3e-05 54_[+2]_25 chrIV:1017102-1017417 6.3e-05 43_[-2]_36 chrXIV:525031-525240 9.2e-05 20_[-2]_59 chrXV:988194-988604 9.7e-05 52_[-2]_27 chrXIII:296818-297137 0.00029 26_[-2]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTGGYBYAGTGGKTARVGSS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BDTGGYBYAGTGGKTARVGSS width=21 seqs=130 chrIV:1305473-1305807 ( 45) CTTGGCCGAGTGGTTAAGGCG 1 chrV:86410-86782 ( 63) CTTGGCCGAGTGGTTAAGGCG 1 chrIV:437612-437968 ( 37) CTTGGCCGAGTGGTTAAGGCG 1 chrX:523898-523998 ( 34) CTTGGCCGAGTGGTTAAGGCG 1 chrXIII:259048-259387 ( 47) CTTGGCCGAGTGGTTAAGGCG 1 chrXII:167851-168182 ( 34) CTTGGCCGAGTGGTTAAGGCG 1 chrXII:656845-657150 ( 34) TGTGGCGTAGTCGGTAGCGCG 1 chrVIII:146079-146460 ( 70) TGTGGCGTAGTCGGTAGCGCG 1 chrXVI:856744-857089 ( 41) TGTGGCGTAGTCGGTAGCGCG 1 chrVII:774189-774549 ( 35) TGTGGCGTAGTCGGTAGCGCG 1 chrIII:227785-228202 ( 4) TATGGCCGAGTGGTTAAGGCG 1 chrXIV:569748-570111 ( 36) CTTGGCCCAGTTGGTTAAGGC 1 chrIX:183331-183680 ( 33) CTTGGCCCAGTTGGTTAAGGC 1 chrXVI:819350-819731 ( 44) CTTGGCCCAGTTGGTTAAGGC 1 chrXVI:880182-880541 ( 33) CTTGGCCCAGTTGGTTAAGGC 1 chrIX:210490-210866 ( 42) CTTGGCCCAGTTGGTTAAGGC 1 chrVII:738972-739343 ( 20) CTTGGCCCAGTTGGTTAAGGC 1 chrXII:734662-734963 ( 45) CTTGGCCCAGTTGGTTAAGGC 1 chrIV:359434-359805 ( 13) GTTAGCTCAGTTGGTAGAGCG 1 chrXII:875207-875594 ( 31) GTTAGCTCAGTTGGTAGAGCG 1 chrXVI:769086-769490 ( 39) GTTAGCTCAGTTGGTAGAGCG 1 chrXV:438496-438885 ( 8) GTTAGCTCAGTTGGTAGAGCG 1 chrXII:731973-732283 ( 17) TTTGGCCGAGTGGTTTAAGGC 1 chrXII:592420-592784 ( 42) TTTGGCCGAGTGGTTTAAGGC 1 chrXII:374186-374610 ( 12) CGTGGCCCAATGGTCACGGCG 1 chrVII:876237-876559 ( 51) GTTGGCGCAATCGGTAGCGCG 1 chrVI:226594-226926 ( 25) GTTGGCGCAATCGGTAGCGCG 1 chrVII:122123-122492 ( 17) GTTGGCGCAATCGGTAGCGCG 1 chrIV:1201589-1201984 ( 19) GTTGGCGCAATCGGTAGCGCG 1 chrX:233761-233861 ( 66) CGTGGCCCAATGGTCACGGCG 1 chrVII:185565-185942 ( 58) GTTGGCGCAATCGGTAGCGCG 1 chrIV:619849-620192 ( 46) CGTGGCCCAATGGTCACGGCG 1 chrV:435640-435975 ( 42) GTTGGCGCAATCGGTAGCGCG 1 chrXVI:581910-582272 ( 26) GTTGGCGCAATCGGTAGCGCG 1 chrIV:1352379-1352658 ( 45) GTTGGCGCAATCGGTAGCGCG 1 chrV:492213-492568 ( 59) CGTGGCCCAATGGTCACGGCG 1 chrX:58984-59084 ( 38) TATGGCCAAGTTGGTAAGGCG 1 chrXV:113641-113970 ( 52) TATGGCCAAGTTGGTAAGGCG 1 chrVIII:115974-116345 ( 45) TATGGCCAAGTTGGTAAGGCG 1 chrXIV:104677-105041 ( 1) TATGGCCAAGTTGGTAAGGCG 1 chrXIV:374722-375044 ( 41) CTTAGCTCAGTTGGGAGAGCG 1 chrIV:1095269-1095604 ( 50) CTTAGCTCAGTTGGGAGAGCG 1 chrXIV:102553-102943 ( 23) CATGGCCAAGTTGGTTAAGGC 1 chrXIV:632449-632779 ( 40) CATGGCCAAGTTGGTTAAGGC 1 chrVI:137394-137701 ( 37) CATGGCCAAGTTGGTTAAGGC 1 chrIII:127558-127889 ( 48) CATGGCCAAGTTGGTTAAGGC 1 chrX:378210-378310 ( 55) CGTGGTCTAGTCGGTTATGGC 1 chrXV:663704-664032 ( 42) CGTGGTCTAGTCGGTTATGGC 1 chrXIII:372329-372612 ( 73) CGTGGTCTAGTCGGTTATGGC 1 chrVII:823330-823698 ( 23) CGTGGTCTAGTCGGTTATGGC 1 chrXI:308052-308363 ( 35) CGTGGTCTAGTCGGTTATGGC 1 chrV:469314-469630 ( 40) CGTGGTCTAGTCGGTTATGGC 1 chrII:36232-36592 ( 41) TTTAGCTCAGTTGGGAGAGCG 1 chrXIII:352123-352448 ( 50) TTTAGCTCAGTTGGGAGAGCG 1 chrXV:226522-226848 ( 21) AGTGGTTTAGTGGTAAAATCC 1 chrXV:282016-282328 ( 47) AGTGGTTTAGTGGTAAAATCC 1 chrIV:992686-993027 ( 31) AGTGGTTTAGTGGTAAAATCC 1 chrVI:180799-181194 ( 73) AGTGGTTTAGTGGTAAAATCC 1 chrVI:162070-162374 ( 61) AGTGGTTTAGTGGTAAAATCC 1 chrXVI:860217-860632 ( 10) AGTGGTTTAGTGGTAAAATCC 1 chrIII:142617-142927 ( 24) AGTGGTTTAGTGGTAAAATCC 1 chrVII:845485-845877 ( 23) AGTGGTTTAGTGGTAAAATCC 1 chrXI:84047-84357 ( 61) GTTGGCCGAGTGGTCTAATGC 1 chrIV:1256913-1257232 ( 32) AGTGGTTCAGTGGTTAGAATT 1 chrXIII:195968-196304 ( 59) TGTGGTCTAGTGGTATGATTC 1 chrXII:92384-92791 ( 16) TGTGGTCTAGTGGTATGATTC 1 chrVI:101224-101574 ( 32) TGTGGTCTAGTGGTATGATTC 1 chrI:138989-139375 ( 25) TGTGGTCTAGTGGTATGATTC 1 chrXV:980558-980906 ( 6) TGTGGTCTAGTGGTATGATTC 1 chrXIV:567979-568301 ( 30) TGTGGTCTAGTGGTATGATTC 1 chrVII:857241-857634 ( 79) TTTGGCCGAGCGGTCTAAGGC 1 chrVII:422937-423317 ( 20) TTTGGCCGAGCGGTCTAAGGC 1 chrXII:628217-628602 ( 29) TTTGGCCGAGCGGTCTAAGGC 1 chrXIV:442854-443241 ( 14) TTTGGCCGAGCGGTCTAAGGC 1 chrIV:1175659-1176055 ( 27) AGTAGCTCAGTAGGAAGAGCG 1 chrXV:976261-976598 ( 47) AGTAGCTCAGTAGGAAGAGCG 1 chrX:390930-391030 ( 33) AGTAGCTCAGTAGGAAGAGCG 1 chrXIII:747810-748128 ( 19) CGTGGCGTAATGGCAACGCGT 1 chrVII:736161-736543 ( 43) CGTGGCGTAATGGCAACGCGT 1 chrVII:828516-828963 ( 80) CGTGGCGTAATGGCAACGCGT 1 chrV:138501-138882 ( 30) CGTGGCGTAATGGCAACGCGT 1 chrXI:162321-162705 ( 70) CGTGGCGTAATGGCAACGCGT 1 chrXIII:131708-132046 ( 44) CGTGGCGTAATGGCAACGCGT 1 chrVIII:134206-134523 ( 12) TATAGTGTAGTGGTTATCACT 1 chrIV:520814-521145 ( 48) TATAGTGTAGTGGTTATCACT 1 chrXV:110822-111150 ( 72) GTTAGTGTAGTGGTTATCATC 1 chrV:131013-131306 ( 19) TATAGTGTAGTGGTTATCACT 1 chrIII:168197-168548 ( 25) TATAGTGTAGTGGTTATCACT 1 chrIV:645043-645378 ( 39) TATAGTGTAGTGGTTATCACT 1 chrXII:448510-448883 ( 50) TATAGTGTAGTGGTTATCACT 1 chrVII:779466-779832 ( 22) GTTAGTGTAGTGGTTATCATC 1 chrVI:210517-210861 ( 43) GGTAGCCAAGTTGGTTTAAGG 1 chrX:354086-354186 ( 30) GGTAGCCAAGTTGGTTTAAGG 1 chrIV:946142-946576 ( 8) GGTAGCCAAGTTGGTTTAAGG 1 chrVII:661578-662010 ( 10) CTTAGCTTAGTGGTAGAGCGT 1 chrVII:1004076-1004400 ( 33) CTTAGCTTAGTGGTAGAGCGT 1 chrVIII:466826-467143 ( 61) CTTAGCTTAGTGGTAGAGCGT 1 chrII:405708-406178 ( 72) GATAGTTTAATGGTCAGAATG 1 chrX:355207-355307 ( 71) GATAGTTTAATGGTCAGAATG 1 chrVII:531476-531743 ( 56) GATAGTTTAATGGTCAGAATG 1 chrIV:568731-569164 ( 72) GATAGTTTAATGGTCAGAATG 1 chrX:541400-541500 ( 32) GATAGTTTAATGGTCAGAATG 1 chrXV:571803-572108 ( 58) GATAGTTTAATGGTCAGAATG 1 chrX:204593-204693 ( 24) GATAGTTTAATGGTCAGAATG 1 chrVII:287201-287607 ( 76) GGTGGCTCAATGGTAGAGCTT 1 chrVII:878567-878983 ( 65) GGTGGCTCAATGGTAGAGCTT 1 chrXIII:379223-379575 ( 34) GGTGGCTCAATGGTAGAGCTT 1 chrX:415829-415929 ( 47) GGTGGCTCAATGGTAGAGCTT 1 chrXII:108251-108661 ( 8) CTTGGCTTAGTGAGTGGCCGG 1 chrXIII:251740-252150 ( 40) GTTGGTTTAGTTGCTGGTGGT 1 chrXV:710086-710342 ( 42) CGTGGCGCAGTGGAAGCGCGC 1 chrXIII:759238-759648 ( 4) CTTGGCGAAGATGGTTGAGCT 1 chrV:434401-434763 ( 55) CTTAGTATAGTGGTTAGTACA 1 chrXIII:362897-363284 ( 29) CTTAGTATAGTGGTTAGTACA 1 chrVIII:62580-62924 ( 58) CTTAGTATAGTGGTTAGTACA 1 chrXI:313305-313628 ( 31) CTTAGTATAGTGGTTAGTACA 1 chrII:642894-643223 ( 45) TATGGCGCAGTGGTAGCGCAG 1 chrXIII:69632-70042 ( 39) TGTGGCGCCATCGTCATCACG 1 chrXVI:435801-436119 ( 29) TATGGCGCAGTGGTAGCGCAG 1 chrVIII:475607-475923 ( 38) AATAGTGTAGCGGCTATCACG 1 chrXII:951367-951594 ( 26) TGTGGCTGAAGTGTTAGCAGC 1 chrIV:1075346-1075702 ( 45) AATAGTGTAGCGGCTATCACG 1 chrXV:619141-619551 ( 63) TGTGGCACCGCGGCATGAGCG 1 chrXII:818465-818802 ( 31) TCTAGTGCAATGGTTAGCATG 1 chrI:71086-71496 ( 6) CGTGGCAGAGTTGGGTCAAGT 1 chrIX:197439-197745 ( 55) TGTAGTGTAACGGCTATCACA 1 chrIV:1017102-1017417 ( 44) TGTAGTGTAACGGCTATCACA 1 chrXIV:525031-525240 ( 21) TGTGACGTTGTTGCTATAGCG 1 chrXV:988194-988604 ( 53) GGCGGCGCCATCGGTACCGGT 1 chrXIII:296818-297137 ( 27) TATGGGTGTGCGGGTAATGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTGGYBYAGTGGKTARVGSS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 46880 bayes= 6.73636 E= 1.3e-208 -145 79 22 3 -51 -473 102 32 -1367 -473 -1367 175 10 -1367 174 -1367 -526 -1367 227 -1367 -1367 164 -473 26 -267 85 51 -1 -167 65 -65 62 171 -315 -1367 -426 -13 -1367 183 -1367 -526 -142 -473 162 -367 -42 151 -31 -526 -1367 227 -1367 -526 -104 96 74 -17 -65 -242 95 110 -1367 -115 -9 41 -83 82 -117 60 12 22 -167 -31 -65 133 -135 -426 128 65 -87 -267 65 110 -62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTGGYBYAGTGGKTARVGSS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 130 E= 1.3e-208 0.107692 0.353846 0.238462 0.300000 0.207692 0.007692 0.415385 0.369231 0.000000 0.007692 0.000000 0.992308 0.315385 0.000000 0.684615 0.000000 0.007692 0.000000 0.992308 0.000000 0.000000 0.638462 0.007692 0.353846 0.046154 0.369231 0.292308 0.292308 0.092308 0.323077 0.130769 0.453846 0.961538 0.023077 0.000000 0.015385 0.269231 0.000000 0.730769 0.000000 0.007692 0.076923 0.007692 0.907692 0.023077 0.153846 0.584615 0.238462 0.007692 0.000000 0.992308 0.000000 0.007692 0.100000 0.400000 0.492308 0.261538 0.130769 0.038462 0.569231 0.630769 0.000000 0.092308 0.276923 0.392308 0.115385 0.361538 0.130769 0.446154 0.223077 0.238462 0.092308 0.238462 0.130769 0.515385 0.115385 0.015385 0.500000 0.323077 0.161538 0.046154 0.323077 0.438462 0.192308 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTGGYBYAGTGGKTARVGSS MEME-2 regular expression -------------------------------------------------------------------------------- [CTG][GTA]T[GA]G[CT][CGT][TC]A[GA]T[GT]G[TG][TA][AT][AG][AGC][GA][CG][GC] -------------------------------------------------------------------------------- Time 639.36 secs. ******************************************************************************** ******************************************************************************** MOTIF RRTGTAYGGRTGTWW MEME-3 width = 15 sites = 86 llr = 937 E-value = 2.7e-068 ******************************************************************************** -------------------------------------------------------------------------------- Motif RRTGTAYGGRTGTWW MEME-3 Description -------------------------------------------------------------------------------- Simplified A 36::17:1:5:::44 pos.-specific C 1::1215:::::3:1 probability G 5419:1:9a5:9:22 matrix T 1:8:715:::a1733 bits 2.3 * 2.1 * 1.8 * ** 1.6 * ** ** Relative 1.4 * ** ** Entropy 1.1 ** ** ** (15.7 bits) 0.9 *** ******* 0.7 **** ******* 0.5 ************* 0.2 ************** 0.0 --------------- Multilevel GATGTATGGGTGTAA consensus AG C A CTT sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRTGTAYGGRTGTWW MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chrXII:932115-932468 + 34 1.85e-08 CAGATGTACG GATGTACGGATGTAT ACTATGTAAT chrII:89648-89950 + 52 2.97e-08 TGTTAAAGAG GGTGTATGGATGTAA AGTCACAAAA chrX:157506-157606 + 60 4.28e-08 AAGTTATGGA GATGTATGGATGTAT AAAGTGTACG chrIV:229457-229867 - 40 4.28e-08 TAATCCTTCT GATGTACGGATGTTT TGTGTAAGAT chrII:592916-593239 + 58 5.84e-08 GGAGTTCAAA GATGTATGGATGCAA GAAAAGAGGT chrXIII:225386-225727 - 37 7.54e-08 TAAAAAATAG AATGTACGGATGTAA TGCACGGATG chrV:396251-396542 - 31 1.55e-07 GGTTCACAAA AGTGTACGGATGTAT ACAACAGGGA chrIV:1359438-1359809 - 21 2.03e-07 ATGGGTGCGT AATGTACGGATGTTT AATGTCTTTT chrXVI:378702-378923 + 78 2.03e-07 TGAGAACTCG AATGTACGGATGTTT TCTCTGAA chrVII:555363-555685 - 34 2.46e-07 AAACACTTTT AATGCACGGGTGTAA AAGGGATGTA chrXIII:732073-732374 - 31 2.46e-07 ACACATGCGC GATGTGCGGATGTAT TATGTCTTGA chrII:45039-45335 - 31 2.46e-07 ACATACATAG AATGTACGGATGCAT GATTGTCTCA chrVIII:505841-506153 + 54 3.69e-07 GTCTGGGTGA AATGTATGGATGCAT AATTGTCTCG chrVII:149142-149481 + 57 3.69e-07 TGTATGGGTG GGTGTATGGATGCTG TAAGCACAGT chrIV:524983-525393 + 65 4.25e-07 TTTTTGGTGT AGTGTATGGGTGTTG TGAAAATATT chrV:69084-69355 + 11 4.25e-07 GAAGCTTTGT GGGGTACGGGTGCAT GCTCGGCTTT chrXIII:551371-551784 + 1 4.25e-07 . AATGTATGGGTGCGT AATGTACAGA chrX:703288-703388 + 61 4.85e-07 ATAAATAGTG GATGCATGGGTGCTT CCACGCGTCT chrVI:95481-95806 + 43 4.85e-07 TACGCAATCC GGTGTGTGGGTGCAT GACTGATTGG chrV:53548-53887 + 68 4.85e-07 ACACATATTT GGTGTTCGGATGTTA AACAGGGTAT chrIII:58685-59095 - 29 6.30e-07 TTTCAGAAAT GGTGCACGGATGTAC CCACGCAATG chrXV:79790-80108 + 49 7.26e-07 ACTTATTTAA TATGTACGGGTGTTT ACATGGAGTT chrXV:678849-679160 + 56 7.26e-07 GGGTCCACAA TATGTACGGATGTAT GGTCCCAAAA chrXV:1028702-1029062 + 75 7.26e-07 AAACAAATCA AATGTACGGATGCAC AATGGTAAAC chrVII:1000401-1000590 - 11 8.39e-07 CAAATATGCA GGTGTTTGGGTGCTA TCTTAGTGGA chrXI:382184-382428 - 47 8.39e-07 TGTTGGGTGT GATGTCCGGATGCAA CAGCAGCAAA chrXII:713152-713530 + 81 8.39e-07 TTTTTATACA TATGTACGGATGTGA TAGTC chrXIV:63148-63489 + 50 8.39e-07 GGGTTGCTAA AATGTTCGGATGTAA AGTAGTATTG chrIV:1300961-1301266 - 44 9.44e-07 AAACATCCAC AGTGCACGGATGTTT GAAGGAAAAT chrXVI:406223-406551 - 32 9.44e-07 TGGAGGTGGA AAGGTACGGATGTTA AACTTCATAA chrVII:534812-535181 + 58 9.44e-07 GGGTTACACA AATGCACGGATGCAT ATATAAAATA chrXII:781474-781830 + 54 9.44e-07 GGTTTATGAA AATGCACGGATGCAT TTTCTCTAGA chrXII:710564-710974 - 12 1.07e-06 CGCAAAATGA GATGCGTGGGTGTGA TTCCTGCTTG chrII:605761-606126 - 21 1.07e-06 TGATGGTGAA GATGTACAGGTGTAA AACTGTCAGA chrVII:726451-726756 - 49 1.07e-06 ATTTAAAAAT AGGGTATGGGTGTAT ATAGGGTATG chrIV:130576-130925 + 49 1.07e-06 AAAGCTATAA AATGTGCGGATGTTT GTATATGTCA chrV:305818-306172 - 38 1.95e-06 TGGGCTTGTA AATGTGTGGGTGTAC AGTCCCGATA chrIV:538905-539315 - 43 1.95e-06 GATTGAATGA GGGGTGTGGGTGTGA TAATTCATGT chrV:140471-140859 + 60 2.17e-06 GGCATTGTAA AAGGTATGGGTGCTT TGTGCGTCCA chrXII:645887-646086 - 8 2.17e-06 TCGCCCGACG GGTGAATGGGTGTGG GTGGAAC chrVII:310540-310874 - 27 2.40e-06 GTGGGTCCCT GGTGTACAGATGTTA CATTGGTTAC chrIV:411291-411609 - 33 2.40e-06 TTGGGTGCCC GGGGTGTGGGTGTTT GATTTGTTTC chrVII:648976-649302 + 60 2.40e-06 ATGGGTTCTC GTTGTACGGATGTTT AAAATGTCCT chrIX:254229-254543 + 22 2.99e-06 CGGCAATTAG AATGTGTGGGTGCGG AAGCTCGCCG chrIV:217222-217464 - 19 2.99e-06 TATAGAATAA AATGTACGGGTTCAA AGCAGGGCCT chrVII:277077-277384 - 45 3.30e-06 CCATAGAGCG GGTGTATGGGTCTAG CTTAAATACA chrXV:161184-161348 + 30 3.64e-06 TAGGAATCCC GATGTATGGGTTTGG TTGCCAGAAA chrXIV:495230-495550 + 38 3.64e-06 ATTTTTAAAG GAGGTTTGGGTGTGT ATAGTGTACG chrXII:922147-922510 - 65 4.04e-06 AGAATTGGAA TATGTACGGGTGTCA ATTTCAAACG chrV:423143-423448 - 25 4.46e-06 GGGTGTAGAA GGTGTACGGAGGTAA ATATGCAGCA chrVII:438610-438888 + 36 4.89e-06 AAATATATGT GGTGCACAGATGTAA CGTTCCAAAA chrXV:505148-505466 - 60 4.89e-06 TACCATATCA TATGTTTGGGTGTGA TAAGGTTCAT chrIX:316186-316571 - 22 5.39e-06 TTTGTAAAAT AATGTATGGGTTCTA GTCTGAAAAC chrXV:216296-216670 - 16 5.39e-06 GGAAGGCGCG GGTGCTCGGATGTTC CGATAAAATA chrXII:1028272-1028564 - 28 5.93e-06 CATACATTTT GGTGCATGGGTGATA TTTTGTCTTT chrXI:313305-313628 - 78 5.93e-06 TTCCACCA GGTGTGCAGATGTAA CCAAAAATTT chrX:291099-291199 + 14 6.49e-06 TACTGTGATT GGCGCACGGGTGTGG AGGTGTCGCT chrIII:178325-178605 + 57 6.49e-06 AGAGTAGTAA AATGTACAGATGTTT ATTAAGTCCG chrXII:1012174-1012311 - 44 7.12e-06 ATTTGCGTGT GGTGCATGGGTTCTA TTCCTCATTA chrIV:491058-491208 - 46 7.12e-06 TTTTTTCCTG AATGATTGGGTGTAA TAAAATAGGT chrX:391833-391933 - 66 7.78e-06 CGCTCGCAGG GAGGTCTGGGTGTGG GGCGTGTGCG chrII:332364-332715 - 34 8.50e-06 TGGGTTTAGA ATTGTATGGGTGCAG CAAGGAAATA chrX:73444-73544 - 15 1.11e-05 TTTTCAGTGT GGTGCAAGGATGTAA AATGATGTGT chrVIII:175072-175350 - 19 1.11e-05 GGAGTTTCAT GATGTATGGGTCTCA GCATTGCGCT chrX:90097-90197 - 51 1.21e-05 AAAACAAGGC CATGTATGGGTGAGA ATGTTCAGGT chrIV:1401306-1401573 - 27 1.21e-05 GTGGGTGGAA AATGATTGGGTGTTT AAAAACATAG chrXVI:642148-642558 - 47 1.31e-05 TCTGGCAATT GGTCAATGGATGTGA TTCTCTTCTT chrXIII:434301-434711 - 74 1.31e-05 ACAAAAGGAC AGTGTACGGACGCAG AAACGTTCCG chrIV:117216-117570 - 25 1.43e-05 TGGGTGTAGA TATGTATGGGTCTGA GATTAATACA chrVII:905355-905765 + 75 1.43e-05 TTCTCGCTGT CGTCTATGGGTGTTG CGTGGGGGGT chrI:68191-68601 - 79 1.43e-05 GTGCTGC GGTGCATGGCTGTTT TACCCGTTTA chrXV:978756-979118 + 51 1.55e-05 TATACACAAG GATGAATGGGTTCTA CGACACCGCG chrXIV:355363-355773 + 62 1.68e-05 CCCGTGCCAA GGTCTCTGGGTGTTG CTGATTTCCG chrXVI:699980-700353 - 29 1.82e-05 ATCACTTGTG GGGGATTGGGTGTGA TGTAAGGATT chrXV:253872-254102 + 41 1.82e-05 TTATACGCGC GGTGTACGGATTAAA AAAGTTTTGT chrXVI:76306-76705 - 77 2.30e-05 TCACCCGTA CATCCACGGATGTGT TGGGTTTTTG chrXII:731973-732283 + 75 3.31e-05 AAATCTCTGA TATCTTCGGATGCAA GGGTTCGAAT chrVII:480919-481246 - 29 3.55e-05 GGTGTTATGC CATGTATGGATCCAC CAAGAGACGA chrXV:832178-832652 - 7 3.81e-05 CCCCTCTGAT CACCTACGGATGTAA GATGGC chrXV:832178-832587 - 40 3.81e-05 CCCCTCTGAT CACCTACGGATGTAA GATGGCACAG chrVII:609794-610108 + 21 4.08e-05 CCGGTGTAGT CACGTGCGGGTGCGG AGGGCAGCCG chrXII:924520-924930 + 55 4.08e-05 CGGTACGGGC GGTGACTGGGTGCCA AACAGTGCGG chrXV:282016-282328 + 11 4.37e-05 CGCTTAAATA GAGGAGTGGATGCTC AGGATAACAT chrXIV:421151-421561 + 84 4.67e-05 ACTGGCGGCA GTGGTTTGGGTGTAC TG chrII:167976-168177 - 7 4.99e-05 TGGTGAAAAA TATGTCTGGGTTTTA AAACAC chrXV:968126-968385 + 64 4.99e-05 AAAAGCGTGG GGTGCGTGGGCGTGC GCAGCTCGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRTGTAYGGRTGTWW MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:932115-932468 1.8e-08 33_[+3]_52 chrII:89648-89950 3e-08 51_[+3]_34 chrX:157506-157606 4.3e-08 59_[+3]_26 chrIV:229457-229867 4.3e-08 39_[-3]_46 chrII:592916-593239 5.8e-08 57_[+3]_28 chrXIII:225386-225727 7.5e-08 36_[-3]_49 chrV:396251-396542 1.5e-07 30_[-3]_55 chrIV:1359438-1359809 2e-07 20_[-3]_65 chrXVI:378702-378923 2e-07 77_[+3]_8 chrVII:555363-555685 2.5e-07 33_[-3]_52 chrXIII:732073-732374 2.5e-07 30_[-3]_55 chrII:45039-45335 2.5e-07 30_[-3]_55 chrVIII:505841-506153 3.7e-07 53_[+3]_32 chrVII:149142-149481 3.7e-07 56_[+3]_29 chrIV:524983-525393 4.2e-07 64_[+3]_21 chrV:69084-69355 4.2e-07 10_[+3]_75 chrXIII:551371-551784 4.2e-07 [+3]_85 chrX:703288-703388 4.9e-07 60_[+3]_25 chrVI:95481-95806 4.9e-07 42_[+3]_43 chrV:53548-53887 4.9e-07 67_[+3]_18 chrIII:58685-59095 6.3e-07 28_[-3]_57 chrXV:79790-80108 7.3e-07 48_[+3]_37 chrXV:678849-679160 7.3e-07 55_[+3]_30 chrXV:1028702-1029062 7.3e-07 74_[+3]_11 chrVII:1000401-1000590 8.4e-07 10_[-3]_75 chrXI:382184-382428 8.4e-07 46_[-3]_39 chrXII:713152-713530 8.4e-07 80_[+3]_5 chrXIV:63148-63489 8.4e-07 49_[+3]_36 chrIV:1300961-1301266 9.4e-07 43_[-3]_42 chrXVI:406223-406551 9.4e-07 31_[-3]_54 chrVII:534812-535181 9.4e-07 57_[+3]_28 chrXII:781474-781830 9.4e-07 53_[+3]_32 chrXII:710564-710974 1.1e-06 11_[-3]_74 chrII:605761-606126 1.1e-06 20_[-3]_65 chrVII:726451-726756 1.1e-06 48_[-3]_37 chrIV:130576-130925 1.1e-06 48_[+3]_37 chrV:305818-306172 1.9e-06 37_[-3]_48 chrIV:538905-539315 1.9e-06 42_[-3]_43 chrV:140471-140859 2.2e-06 59_[+3]_26 chrXII:645887-646086 2.2e-06 7_[-3]_78 chrVII:310540-310874 2.4e-06 26_[-3]_59 chrIV:411291-411609 2.4e-06 32_[-3]_53 chrVII:648976-649302 2.4e-06 59_[+3]_26 chrIX:254229-254543 3e-06 21_[+3]_64 chrIV:217222-217464 3e-06 18_[-3]_67 chrVII:277077-277384 3.3e-06 44_[-3]_41 chrXV:161184-161348 3.6e-06 29_[+3]_56 chrXIV:495230-495550 3.6e-06 37_[+3]_48 chrXII:922147-922510 4e-06 64_[-3]_21 chrV:423143-423448 4.5e-06 24_[-3]_61 chrVII:438610-438888 4.9e-06 35_[+3]_50 chrXV:505148-505466 4.9e-06 59_[-3]_26 chrIX:316186-316571 5.4e-06 21_[-3]_64 chrXV:216296-216670 5.4e-06 15_[-3]_70 chrXII:1028272-1028564 5.9e-06 27_[-3]_58 chrXI:313305-313628 5.9e-06 77_[-3]_8 chrX:291099-291199 6.5e-06 13_[+3]_72 chrIII:178325-178605 6.5e-06 56_[+3]_29 chrXII:1012174-1012311 7.1e-06 43_[-3]_42 chrIV:491058-491208 7.1e-06 45_[-3]_40 chrX:391833-391933 7.8e-06 65_[-3]_20 chrII:332364-332715 8.5e-06 33_[-3]_52 chrX:73444-73544 1.1e-05 14_[-3]_71 chrVIII:175072-175350 1.1e-05 18_[-3]_67 chrX:90097-90197 1.2e-05 50_[-3]_35 chrIV:1401306-1401573 1.2e-05 26_[-3]_59 chrXVI:642148-642558 1.3e-05 46_[-3]_39 chrXIII:434301-434711 1.3e-05 73_[-3]_12 chrIV:117216-117570 1.4e-05 24_[-3]_61 chrVII:905355-905765 1.4e-05 74_[+3]_11 chrI:68191-68601 1.4e-05 78_[-3]_7 chrXV:978756-979118 1.5e-05 50_[+3]_35 chrXIV:355363-355773 1.7e-05 61_[+3]_24 chrXVI:699980-700353 1.8e-05 28_[-3]_57 chrXV:253872-254102 1.8e-05 40_[+3]_45 chrXVI:76306-76705 2.3e-05 76_[-3]_9 chrXII:731973-732283 3.3e-05 74_[+3]_11 chrVII:480919-481246 3.6e-05 28_[-3]_57 chrXV:832178-832652 3.8e-05 6_[-3]_79 chrXV:832178-832587 3.8e-05 39_[-3]_46 chrVII:609794-610108 4.1e-05 20_[+3]_65 chrXII:924520-924930 4.1e-05 54_[+3]_31 chrXV:282016-282328 4.4e-05 10_[+3]_75 chrXIV:421151-421561 4.7e-05 83_[+3]_2 chrII:167976-168177 5e-05 6_[-3]_79 chrXV:968126-968385 5e-05 63_[+3]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRTGTAYGGRTGTWW MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RRTGTAYGGRTGTWW width=15 seqs=86 chrXII:932115-932468 ( 34) GATGTACGGATGTAT 1 chrII:89648-89950 ( 52) GGTGTATGGATGTAA 1 chrX:157506-157606 ( 60) GATGTATGGATGTAT 1 chrIV:229457-229867 ( 40) GATGTACGGATGTTT 1 chrII:592916-593239 ( 58) GATGTATGGATGCAA 1 chrXIII:225386-225727 ( 37) AATGTACGGATGTAA 1 chrV:396251-396542 ( 31) AGTGTACGGATGTAT 1 chrIV:1359438-1359809 ( 21) AATGTACGGATGTTT 1 chrXVI:378702-378923 ( 78) AATGTACGGATGTTT 1 chrVII:555363-555685 ( 34) AATGCACGGGTGTAA 1 chrXIII:732073-732374 ( 31) GATGTGCGGATGTAT 1 chrII:45039-45335 ( 31) AATGTACGGATGCAT 1 chrVIII:505841-506153 ( 54) AATGTATGGATGCAT 1 chrVII:149142-149481 ( 57) GGTGTATGGATGCTG 1 chrIV:524983-525393 ( 65) AGTGTATGGGTGTTG 1 chrV:69084-69355 ( 11) GGGGTACGGGTGCAT 1 chrXIII:551371-551784 ( 1) AATGTATGGGTGCGT 1 chrX:703288-703388 ( 61) GATGCATGGGTGCTT 1 chrVI:95481-95806 ( 43) GGTGTGTGGGTGCAT 1 chrV:53548-53887 ( 68) GGTGTTCGGATGTTA 1 chrIII:58685-59095 ( 29) GGTGCACGGATGTAC 1 chrXV:79790-80108 ( 49) TATGTACGGGTGTTT 1 chrXV:678849-679160 ( 56) TATGTACGGATGTAT 1 chrXV:1028702-1029062 ( 75) AATGTACGGATGCAC 1 chrVII:1000401-1000590 ( 11) GGTGTTTGGGTGCTA 1 chrXI:382184-382428 ( 47) GATGTCCGGATGCAA 1 chrXII:713152-713530 ( 81) TATGTACGGATGTGA 1 chrXIV:63148-63489 ( 50) AATGTTCGGATGTAA 1 chrIV:1300961-1301266 ( 44) AGTGCACGGATGTTT 1 chrXVI:406223-406551 ( 32) AAGGTACGGATGTTA 1 chrVII:534812-535181 ( 58) AATGCACGGATGCAT 1 chrXII:781474-781830 ( 54) AATGCACGGATGCAT 1 chrXII:710564-710974 ( 12) GATGCGTGGGTGTGA 1 chrII:605761-606126 ( 21) GATGTACAGGTGTAA 1 chrVII:726451-726756 ( 49) AGGGTATGGGTGTAT 1 chrIV:130576-130925 ( 49) AATGTGCGGATGTTT 1 chrV:305818-306172 ( 38) AATGTGTGGGTGTAC 1 chrIV:538905-539315 ( 43) GGGGTGTGGGTGTGA 1 chrV:140471-140859 ( 60) AAGGTATGGGTGCTT 1 chrXII:645887-646086 ( 8) GGTGAATGGGTGTGG 1 chrVII:310540-310874 ( 27) GGTGTACAGATGTTA 1 chrIV:411291-411609 ( 33) GGGGTGTGGGTGTTT 1 chrVII:648976-649302 ( 60) GTTGTACGGATGTTT 1 chrIX:254229-254543 ( 22) AATGTGTGGGTGCGG 1 chrIV:217222-217464 ( 19) AATGTACGGGTTCAA 1 chrVII:277077-277384 ( 45) GGTGTATGGGTCTAG 1 chrXV:161184-161348 ( 30) GATGTATGGGTTTGG 1 chrXIV:495230-495550 ( 38) GAGGTTTGGGTGTGT 1 chrXII:922147-922510 ( 65) TATGTACGGGTGTCA 1 chrV:423143-423448 ( 25) GGTGTACGGAGGTAA 1 chrVII:438610-438888 ( 36) GGTGCACAGATGTAA 1 chrXV:505148-505466 ( 60) TATGTTTGGGTGTGA 1 chrIX:316186-316571 ( 22) AATGTATGGGTTCTA 1 chrXV:216296-216670 ( 16) GGTGCTCGGATGTTC 1 chrXII:1028272-1028564 ( 28) GGTGCATGGGTGATA 1 chrXI:313305-313628 ( 78) GGTGTGCAGATGTAA 1 chrX:291099-291199 ( 14) GGCGCACGGGTGTGG 1 chrIII:178325-178605 ( 57) AATGTACAGATGTTT 1 chrXII:1012174-1012311 ( 44) GGTGCATGGGTTCTA 1 chrIV:491058-491208 ( 46) AATGATTGGGTGTAA 1 chrX:391833-391933 ( 66) GAGGTCTGGGTGTGG 1 chrII:332364-332715 ( 34) ATTGTATGGGTGCAG 1 chrX:73444-73544 ( 15) GGTGCAAGGATGTAA 1 chrVIII:175072-175350 ( 19) GATGTATGGGTCTCA 1 chrX:90097-90197 ( 51) CATGTATGGGTGAGA 1 chrIV:1401306-1401573 ( 27) AATGATTGGGTGTTT 1 chrXVI:642148-642558 ( 47) GGTCAATGGATGTGA 1 chrXIII:434301-434711 ( 74) AGTGTACGGACGCAG 1 chrIV:117216-117570 ( 25) TATGTATGGGTCTGA 1 chrVII:905355-905765 ( 75) CGTCTATGGGTGTTG 1 chrI:68191-68601 ( 79) GGTGCATGGCTGTTT 1 chrXV:978756-979118 ( 51) GATGAATGGGTTCTA 1 chrXIV:355363-355773 ( 62) GGTCTCTGGGTGTTG 1 chrXVI:699980-700353 ( 29) GGGGATTGGGTGTGA 1 chrXV:253872-254102 ( 41) GGTGTACGGATTAAA 1 chrXVI:76306-76705 ( 77) CATCCACGGATGTGT 1 chrXII:731973-732283 ( 75) TATCTTCGGATGCAA 1 chrVII:480919-481246 ( 29) CATGTATGGATCCAC 1 chrXV:832178-832652 ( 7) CACCTACGGATGTAA 1 chrXV:832178-832587 ( 40) CACCTACGGATGTAA 1 chrVII:609794-610108 ( 21) CACGTGCGGGTGCGG 1 chrXII:924520-924930 ( 55) GGTGACTGGGTGCCA 1 chrXV:282016-282328 ( 11) GAGGAGTGGATGCTC 1 chrXIV:421151-421561 ( 84) GTGGTTTGGGTGTAC 1 chrII:167976-168177 ( 7) TATGTCTGGGTTTTA 1 chrXV:968126-968385 ( 64) GGTGCGTGGGCGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRTGTAYGGRTGTWW MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 50396 bayes= 9.52314 E= 2.7e-068 9 -133 132 -166 98 -1307 90 -308 -1307 -214 -68 149 -1307 -133 216 -1307 -166 -14 -1307 129 119 -182 -56 -120 -466 122 -1307 80 -234 -1307 220 -1307 -1307 -1307 228 -1307 73 -414 128 -1307 -1307 -314 -414 171 -1307 -214 209 -186 -308 56 -1307 117 55 -256 3 14 55 -114 -44 14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRTGTAYGGRTGTWW MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 86 E= 2.7e-068 0.313953 0.081395 0.511628 0.093023 0.581395 0.000000 0.383721 0.034884 0.000000 0.046512 0.127907 0.825581 0.000000 0.081395 0.918605 0.000000 0.093023 0.186047 0.000000 0.720930 0.674419 0.058140 0.139535 0.127907 0.011628 0.476744 0.000000 0.511628 0.058140 0.000000 0.941860 0.000000 0.000000 0.000000 1.000000 0.000000 0.488372 0.011628 0.500000 0.000000 0.000000 0.023256 0.011628 0.965116 0.000000 0.046512 0.872093 0.081395 0.034884 0.302326 0.000000 0.662791 0.430233 0.034884 0.209302 0.325581 0.430233 0.093023 0.151163 0.325581 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRTGTAYGGRTGTWW MEME-3 regular expression -------------------------------------------------------------------------------- [GA][AG]TGTA[TC]GG[GA]TG[TC][ATG][AT] -------------------------------------------------------------------------------- Time 926.12 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:130576-130925 7.49e-03 48_[+3(1.07e-06)]_37 chrVIII:122320-122730 9.62e-01 100 chrI:65879-66289 2.24e-01 100 chrX:204593-204693 4.55e-06 23_[+2(5.88e-06)]_15_[+1(1.96e-07)]_\ 20 chrX:623166-623266 8.87e-02 100 chrXV:216296-216670 1.56e-02 15_[-3(5.39e-06)]_70 chrXVI:435801-436119 1.35e-02 28_[-2(1.57e-05)]_51 chrX:349241-349341 4.70e-01 100 chrIV:1489481-1490046 4.21e-02 100 chrXV:832178-832587 3.55e-03 39_[-3(3.81e-05)]_46 chrIII:178325-178605 2.56e-02 56_[+3(6.49e-06)]_1_[-3(2.30e-05)]_\ 13 chrV:461708-462118 2.48e-01 100 chrVII:779466-779832 3.50e-09 21_[+2(2.25e-06)]_15_[+1(6.15e-10)]_\ 22 chrX:415829-415929 2.57e-03 46_[-2(6.37e-06)]_33 chrI:72936-73130 2.93e-01 100 chrIV:1095269-1095604 1.13e-03 49_[-2(1.64e-07)]_30 chrXIV:330934-331344 1.48e-01 100 chrIV:1075346-1075702 1.27e-08 7_[-1(3.82e-10)]_16_[-2(2.06e-05)]_\ 35 chrV:287266-287676 7.56e-01 100 chrXIII:290645-290994 3.61e-07 72_[+1(9.63e-10)]_7 chrXII:924520-924930 7.95e-02 54_[+3(4.08e-05)]_31 chrII:45039-45335 1.32e-03 30_[-3(2.46e-07)]_5_[+3(4.46e-06)]_\ 35 chrII:592916-593239 1.37e-04 57_[+3(5.84e-08)]_28 chrIV:768396-768806 8.99e-04 50_[-2(4.59e-06)]_29 chrIX:321945-322355 7.64e-01 100 chrVII:319725-319981 2.71e-03 18_[+1(4.94e-07)]_61 chrXVI:648998-649408 1.04e-01 18_[-2(4.97e-05)]_61 chrIV:229457-229867 1.00e-04 15_[-3(8.50e-06)]_9_[-3(4.28e-08)]_\ 46 chrXV:253872-254102 7.80e-03 7_[-3(6.88e-05)]_18_[+3(1.82e-05)]_\ 45 chrXII:329311-329721 3.43e-01 100 chrX:154564-154664 9.67e-01 100 chrV:492213-492568 8.74e-09 21_[-1(1.40e-07)]_16_[-2(1.52e-08)]_\ 21 chrXV:253966-254376 4.13e-01 100 chrV:53548-53887 2.54e-03 49_[-3(1.55e-05)]_3_[+3(4.85e-07)]_\ 18 chrI:166136-166553 5.49e-07 14_[+1(8.98e-11)]_65 chrXVI:432646-433056 5.03e-01 100 chrXIII:131708-132046 5.79e-09 7_[-1(5.22e-10)]_15_[-2(2.04e-06)]_\ 36 chrXVI:822053-822463 1.33e-01 100 chrX:197171-197271 1.26e-05 46_[-1(7.15e-10)]_33 chrXII:951367-951594 3.05e-02 25_[-2(2.06e-05)]_54 chrXII:459470-460858 2.40e-01 100 chrII:605239-605479 5.41e-01 100 chrVIII:34516-34908 2.12e-01 100 chrXV:445134-445818 3.47e-01 100 chrXIII:124213-124623 8.41e-01 100 chrVII:401452-401583 6.95e-06 69_[-1(9.63e-10)]_10 chrXII:242853-243263 4.19e-01 100 chrXII:723193-723603 1.03e-01 100 chrIV:1013698-1013968 2.43e-02 100 chrXII:253413-253823 3.94e-01 100 chrIV:1161771-1162181 6.91e-01 100 chrXI:578823-579226 3.37e-06 55_[+1(2.87e-09)]_24 chrVI:225091-225501 2.49e-01 100 chrXII:348477-348887 5.57e-01 100 chrVII:609794-610108 1.85e-03 20_[+3(4.08e-05)]_65 chrXII:283106-283351 7.12e-01 100 chrXV:80660-81070 6.73e-01 100 chrXIV:567979-568301 9.76e-04 29_[+2(8.12e-07)]_50 chrXIII:511248-511658 2.65e-02 100 chrXI:84047-84357 3.20e-04 60_[+2(6.49e-07)]_19 chrXV:87935-88345 8.86e-01 100 chrIV:1402729-1403247 4.50e-01 100 chrIV:132684-133094 5.13e-01 100 chrVII:277947-278200 1.41e-01 100 chrXIII:352123-352448 4.65e-04 49_[+2(3.17e-07)]_30 chrXII:448510-448883 1.00e-08 13_[-1(1.04e-08)]_15_[-2(2.25e-06)]_\ 30 chrXV:779738-780873 4.56e-01 100 chrVII:533802-534212 9.02e-01 100 chrII:193524-193934 9.47e-01 100 chrXV:30410-30820 4.42e-01 100 chrXVI:404215-404625 2.25e-01 100 chrI:141897-142307 9.98e-01 100 chrXII:781474-781830 2.08e-03 35_[+3(7.79e-05)]_3_[+3(9.44e-07)]_\ 32 chrXII:198801-199067 8.31e-01 100 chrVI:95481-95806 1.99e-04 42_[+3(4.85e-07)]_43 chrXII:734662-734963 3.31e-05 44_[+2(7.14e-09)]_35 chrVI:183047-183457 3.64e-01 100 chrXIII:420368-420802 9.30e-05 62_[-1(1.15e-08)]_17 chrVIII:381553-381963 9.49e-01 100 chrVIII:466826-467143 2.86e-04 60_[+2(2.47e-06)]_19 chrIV:155947-156357 8.35e-02 100 chrXIV:560538-560844 8.70e-05 61_[-1(9.31e-09)]_18 chrV:139150-139560 4.83e-01 100 chrXII:232351-234016 3.05e-01 100 chrXIII:661672-662082 4.65e-02 100 chrXI:617576-617986 6.52e-01 100 chrXII:259907-260317 1.96e-01 100 chrXVI:693229-693639 4.60e-01 100 chrVIII:554089-554275 4.49e-01 100 chrXV:968126-968385 7.74e-03 63_[+3(4.99e-05)]_22 chrXII:932115-932468 2.38e-04 33_[+3(1.85e-08)]_10_[+3(9.44e-07)]_\ 27 chrI:71086-71496 6.38e-02 5_[-2(2.35e-05)]_74 chrXII:167851-168182 4.05e-06 33_[-2(3.63e-10)]_46 chrI:180965-181450 1.83e-01 100 chrXII:198988-199619 7.36e-02 100 chrXIV:701728-702138 1.99e-01 100 chrXV:867780-868190 9.90e-01 100 chrVII:785899-786309 1.41e-01 100 chrXVI:75294-75482 1.19e-01 100 chrXV:571803-572108 1.53e-02 57_[+2(5.88e-06)]_22 chrX:74220-74320 2.75e-01 100 chrVII:702692-703102 9.96e-02 100 chrXIV:577187-577597 1.78e-01 100 chrI:72446-72962 3.35e-01 100 chrXIII:379223-379575 2.28e-03 33_[-2(6.37e-06)]_46 chrXIV:499369-499691 9.89e-01 100 chrVII:277241-277651 2.04e-01 100 chrIV:599894-600304 5.05e-01 100 chrIV:230220-230630 1.93e-01 100 chrVII:278132-278287 1.93e-01 100 chrIV:1017102-1017417 3.15e-07 7_[-1(9.63e-10)]_15_[-2(6.27e-05)]_\ 36 chrXV:980558-980906 5.59e-10 5_[+2(8.12e-07)]_48_[+1(1.11e-09)]_\ 5 chrIV:884244-884611 8.51e-01 100 chrVIII:475607-475923 2.54e-08 [-1(3.82e-10)]_16_[-2(2.06e-05)]_42 chrXIII:353189-353599 6.85e-01 100 chrXIV:503012-503422 9.32e-01 100 chrXII:794348-794625 4.14e-02 100 chrXIII:732073-732374 2.03e-03 30_[-3(2.46e-07)]_3_[+3(2.40e-06)]_\ 37 chrVII:785647-786057 9.33e-01 100 chrVII:774189-774549 2.69e-12 34_[+2(6.14e-10)]_16_[+1(7.15e-10)]_\ 8 chrXV:69272-69682 6.83e-01 100 chrX:521639-521739 8.57e-01 100 chrV:396251-396542 1.27e-03 30_[-3(1.55e-07)]_3_[-3(3.81e-05)]_\ 37 chrV:487239-487547 8.84e-02 100 chrIV:1352379-1352658 1.41e-11 7_[-1(1.92e-10)]_16_[-2(1.52e-08)]_\ 35 chrXII:513550-513960 5.61e-01 100 chrXII:838202-839044 3.66e-01 100 chrVII:519472-519882 4.92e-01 100 chrIII:177533-177751 3.43e-02 100 chrXI:326449-326958 2.20e-01 100 chrIV:538905-539315 3.00e-04 42_[-3(1.95e-06)]_43 chrXII:810056-810466 8.52e-01 100 chrXIII:119170-119580 9.50e-01 100 chrI:138989-139375 9.60e-04 24_[+2(8.12e-07)]_55 chrII:236897-237307 8.74e-01 100 chrXIV:575094-575504 3.14e-01 100 chrXIV:104677-105041 4.15e-09 [+2(6.86e-08)]_16_[+1(9.31e-09)]_42 chrIV:541707-541965 3.25e-01 100 chrIX:317507-317692 2.54e-01 100 chrXIII:510778-511188 4.63e-01 100 chrXVI:76306-76705 9.05e-03 76_[-3(2.30e-05)]_9 chrV:397296-397422 3.21e-01 100 chrXVI:642439-642849 2.46e-01 100 chrVII:845485-845877 4.00e-09 22_[+2(4.57e-07)]_14_[+1(1.47e-09)]_\ 22 chrXII:605149-605585 8.51e-01 100 chrXIII:504890-505144 2.22e-01 100 chrXI:163564-163974 6.03e-01 100 chrXII:637149-637662 3.84e-01 100 chrXII:201974-202203 1.92e-02 100 chrXII:553726-554136 4.60e-01 100 chrX:390930-391030 9.10e-04 32_[-2(1.24e-06)]_47 chrXV:988194-988604 3.58e-02 52_[-2(9.72e-05)]_27 chrIV:1270062-1270472 7.12e-01 100 chrXVI:581910-582272 1.41e-11 25_[+2(1.52e-08)]_16_[+1(1.92e-10)]_\ 17 chrXI:140806-141249 7.23e-06 50_[-1(9.63e-10)]_29 chrX:541400-541500 4.97e-06 31_[+2(5.88e-06)]_15_[+1(1.96e-07)]_\ 12 chrXIV:442854-443241 2.31e-03 13_[+2(9.06e-07)]_66 chrVII:1004076-1004400 2.87e-07 32_[+2(2.47e-06)]_15_[+1(1.61e-07)]_\ 11 chrXIV:518971-519160 8.16e-01 100 chrVII:481415-482665 5.17e-01 100 chrXIII:259048-259387 2.33e-07 46_[-2(3.63e-10)]_33 chrIX:316186-316571 6.65e-03 21_[-3(5.39e-06)]_64 chrVII:648976-649302 1.27e-02 44_[+3(1.43e-05)]_[+3(2.40e-06)]_26 chrXIII:352989-353399 1.93e-02 100 chrXIV:349966-350376 8.38e-01 100 chrVII:738972-739343 1.10e-11 19_[+2(7.14e-09)]_17_[+1(3.21e-10)]_\ 22 chrVII:271800-272210 3.26e-02 36_[+2(4.16e-05)]_43 chrV:435640-435975 1.41e-11 4_[-1(1.92e-10)]_16_[-2(1.52e-08)]_\ 38 chrVII:547317-547727 4.71e-01 100 chrV:461912-462322 3.26e-01 100 chrXII:954207-954617 4.28e-01 100 chrIV:130180-130293 4.52e-01 100 chrXII:645887-646086 1.37e-03 7_[-3(2.17e-06)]_78 chrXII:83910-84320 8.93e-01 100 chrV:140471-140859 1.31e-02 59_[+3(2.17e-06)]_1_[-3(8.27e-05)]_\ 10 chrX:349042-349142 8.14e-01 100 chrV:469314-469630 1.56e-08 39_[+2(2.15e-07)]_17_[+1(1.15e-08)]_\ 2 chrVII:515907-516317 8.78e-01 100 chrXII:899019-899429 6.18e-01 100 chrIV:619849-620192 8.74e-09 8_[-1(1.40e-07)]_16_[-2(1.52e-08)]_\ 34 chrIII:142617-142927 2.07e-03 23_[-2(4.57e-07)]_56 chrV:545907-546317 1.51e-01 100 chrXVI:795620-796030 9.24e-01 100 chrXI:258497-258907 8.31e-01 100 chrXIII:123334-123744 3.93e-01 100 chrXIII:667243-667653 3.38e-02 100 chrV:431036-431515 2.52e-01 100 chrVII:541684-542087 3.61e-07 55_[+1(9.63e-10)]_24 chrIV:568731-569164 1.53e-08 25_[+1(5.22e-10)]_25_[+2(5.88e-06)]_\ 8 chrXII:704426-704550 8.44e-01 100 chrII:306953-307363 8.02e-01 100 chrV:545688-546098 7.55e-01 100 chrXI:334634-334832 8.62e-01 100 chrIV:118431-118841 8.95e-01 100 chrVIII:236000-236410 8.04e-02 100 chrIV:488552-489050 4.04e-05 55_[-1(5.28e-09)]_24 chrXIV:88884-89194 6.81e-01 100 chrXVI:498985-499395 4.43e-01 100 chrXV:911787-912197 5.99e-01 100 chrXII:366096-366484 6.19e-01 100 chrXIV:63679-64089 3.79e-02 100 chrXV:505148-505466 1.25e-02 34_[-3(1.31e-05)]_10_[-3(4.89e-06)]_\ 26 chrXVI:214805-215215 2.77e-01 100 chrVII:555363-555685 5.69e-04 33_[-3(2.46e-07)]_3_[+3(1.31e-05)]_\ 34 chrXI:364849-364954 5.07e-01 100 chrXV:159611-160121 2.63e-01 100 chrXIII:551371-551784 1.59e-03 [+3(4.25e-07)]_[+3(4.08e-05)]_70 chrX:139598-139698 5.92e-01 100 chrVII:848732-849142 1.75e-01 100 chrXII:922147-922510 6.85e-03 38_[-3(3.81e-05)]_11_[-3(4.04e-06)]_\ 21 chrII:255191-255601 9.48e-02 100 chrXIV:414072-414482 7.49e-01 100 chrVII:545244-545654 2.90e-01 100 chrIV:83404-83728 4.00e-09 36_[+2(4.57e-07)]_14_[+1(1.47e-09)]_\ 8 chrIV:386842-387252 3.98e-01 100 chrXIV:332084-332494 6.95e-01 100 chrIV:215707-216117 3.17e-01 100 chrXV:904460-904870 7.91e-02 100 chrXIII:556715-557125 2.79e-01 100 chrVII:110436-110827 3.36e-03 53_[-1(4.94e-07)]_26 chrIII:137201-137611 5.36e-01 100 chrXIII:652018-652359 8.44e-01 100 chrXVI:689407-689856 3.74e-01 100 chrIV:645043-645378 1.00e-08 2_[-1(1.04e-08)]_15_[-2(2.25e-06)]_\ 41 chrVII:23937-24347 1.82e-01 100 chrXI:458449-458800 1.83e-01 100 chrIII:168197-168548 6.11e-04 24_[-2(2.25e-06)]_55 chrVII:531476-531743 9.86e-03 55_[+2(5.88e-06)]_24 chrXI:308666-309076 5.27e-01 100 chrX:139392-139492 6.77e-01 100 chrX:172870-172970 9.58e-01 100 chrIX:197439-197745 1.02e-01 54_[+2(6.27e-05)]_25 chrXII:371180-371388 4.02e-01 100 chrIV:465157-465498 2.28e-01 100 chrX:355207-355307 1.53e-08 24_[+1(5.22e-10)]_25_[+2(5.88e-06)]_\ 9 chrVII:878567-878983 5.14e-03 64_[-2(6.37e-06)]_15 chrVIII:488393-488515 5.17e-01 100 chrVI:225015-225141 5.32e-01 100 chrIII:295325-295792 8.70e-05 17_[+1(9.31e-09)]_62 chrXV:978756-979118 3.09e-02 50_[+3(1.55e-05)]_35 chrXIV:663545-663955 3.71e-01 100 chrVIII:296902-297176 1.69e-01 100 chrV:354772-355291 1.00e-01 100 chrXVI:856744-857089 2.69e-12 40_[+2(6.14e-10)]_16_[+1(7.15e-10)]_\ 2 chrXV:83120-83530 5.29e-02 9_[+2(8.28e-05)]_70 chrVII:287201-287607 2.80e-06 5_[-1(1.84e-07)]_49_[-2(6.37e-06)]_\ 4 chrX:122788-122888 9.32e-01 100 chrXVI:860217-860632 8.16e-10 9_[+2(4.57e-07)]_14_[+1(1.47e-09)]_\ 35 chrXI:308052-308363 7.76e-04 34_[-2(2.15e-07)]_45 chrXI:313305-313628 1.01e-04 30_[-2(1.36e-05)]_26_[-3(5.93e-06)]_\ 8 chrXI:382833-383243 3.25e-01 100 chrXIII:306472-306882 4.32e-01 100 chrXI:108956-109366 4.22e-01 100 chrXII:404091-404501 3.14e-01 100 chrIV:1011566-1011976 1.06e-01 76_[+1(5.70e-05)]_3 chrV:117614-118262 4.51e-01 100 chrV:85069-85912 5.63e-01 100 chrXV:438496-438885 2.72e-11 7_[+2(1.05e-08)]_39_[+1(2.87e-09)]_\ 12 chrXI:162321-162705 5.79e-09 33_[-1(5.22e-10)]_15_[-2(2.04e-06)]_\ 10 chrII:140416-140826 7.37e-01 100 chrIX:210490-210866 1.10e-11 41_[+2(7.14e-09)]_17_[+1(3.21e-10)] chrIV:217222-217464 1.19e-03 18_[-3(2.99e-06)]_67 chrXIV:63148-63489 5.11e-03 49_[+3(8.39e-07)]_36 chrVIII:190054-190464 1.34e-01 100 chrXVI:210087-210432 9.25e-02 100 chrXIV:664728-665138 9.11e-01 100 chrXV:759180-759320 2.00e-01 100 chrXIV:6687-7097 6.17e-02 28_[-2(3.68e-05)]_51 chrXII:820087-820497 9.27e-01 100 chrXII:837549-837860 9.05e-02 60_[-2(4.16e-05)]_19 chrXI:103152-103562 7.66e-02 40_[-1(2.36e-05)]_39 chrVII:185565-185942 1.41e-11 20_[-1(1.92e-10)]_16_[-2(1.52e-08)]_\ 22 chrX:391833-391933 4.70e-03 21_[-3(7.79e-05)]_29_[-3(7.78e-06)]_\ 20 chrIV:229669-230079 8.37e-01 100 chrVIII:146079-146460 2.69e-12 32_[-1(7.15e-10)]_16_[-2(6.14e-10)]_\ 10 chrVII:726451-726756 4.05e-03 31_[-3(2.68e-06)]_2_[-3(1.07e-06)]_\ 37 chrXV:724326-724736 7.19e-01 100 chrXIII:759238-759648 4.14e-02 3_[-2(1.09e-05)]_76 chrV:242266-242676 5.23e-01 100 chrII:605761-606126 3.39e-03 20_[-3(1.07e-06)]_65 chrXIV:352387-352797 4.73e-01 100 chrXVI:821997-822236 5.70e-01 100 chrXV:836626-837036 5.97e-01 100 chrXIV:495230-495550 1.31e-02 37_[+3(3.64e-06)]_48 chrV:138501-138882 5.79e-09 29_[+2(2.04e-06)]_15_[+1(5.22e-10)]_\ 14 chrXIII:652440-652828 8.21e-01 100 chrXII:818465-818802 2.32e-06 30_[+2(2.20e-05)]_15_[+1(3.69e-08)]_\ 13 chrXIV:576211-576368 7.74e-01 100 chrX:115830-115930 1.23e-01 100 chrX:745092-745192 2.65e-01 100 chrV:335662-336072 3.75e-01 100 chrIII:58685-59095 2.90e-03 28_[-3(6.30e-07)]_57 chrIV:411291-411609 3.78e-04 32_[-3(2.40e-06)]_11_[-2(9.72e-05)]_\ 21 chrXIII:552562-552972 6.16e-01 100 chrVII:544358-544810 1.88e-03 52_[-1(1.96e-07)]_27 chrIV:1266880-1267290 1.89e-01 100 chrIV:1242934-1243344 9.46e-01 100 chrII:168100-168510 7.92e-01 100 chrVII:479943-480280 7.60e-02 100 chrXIII:69632-70042 6.60e-03 38_[+2(1.57e-05)]_41 chrXV:1028702-1029062 4.48e-03 74_[+3(7.26e-07)]_11 chrVII:727407-727817 4.40e-02 100 chrVII:648034-648444 4.52e-01 100 chrIX:386471-386881 7.50e-01 100 chrVI:84060-84171 6.06e-01 100 chrII:36232-36592 1.02e-03 40_[+2(3.17e-07)]_39 chrVII:561524-561756 9.10e-01 100 chrXI:559178-559588 9.30e-01 100 chrII:645009-645350 3.61e-07 78_[+1(9.63e-10)]_1 chrVI:101224-101574 1.61e-03 31_[+2(8.12e-07)]_48 chrXII:638207-638434 1.53e-01 100 chrIV:1461570-1461868 2.24e-01 100 chrVI:162070-162374 2.49e-03 60_[+2(4.57e-07)]_19 chrX:233761-233861 1.41e-04 65_[+2(1.52e-08)]_14 chrVIII:35918-36201 6.81e-01 100 chrVII:823330-823698 1.56e-08 22_[+2(2.15e-07)]_17_[+1(1.15e-08)]_\ 19 chrVII:534812-535181 2.02e-04 36_[+2(8.74e-05)]_[+3(9.44e-07)]_28 chrXIII:434301-434711 5.61e-03 73_[-3(1.31e-05)]_12 chrXIII:372329-372612 1.56e-08 34_[-1(1.15e-08)]_17_[-2(2.15e-07)]_\ 7 chrIV:226928-227338 2.72e-01 100 chrIV:930508-930676 1.08e-01 50_[-2(7.42e-05)]_29 chrXV:678849-679160 3.09e-03 55_[+3(7.26e-07)]_30 chrV:303413-303823 1.56e-01 100 chrXIV:421151-421561 3.97e-02 83_[+3(4.67e-05)]_2 chrVIII:123388-123798 2.20e-02 100 chrVII:640833-641243 4.50e-01 100 chrX:122031-122131 9.85e-01 100 chrXIII:408245-408655 8.44e-02 100 chrXI:259281-259485 4.06e-02 33_[-2(9.72e-05)]_46 chrXII:370505-371016 4.49e-01 100 chrV:131013-131306 8.98e-03 18_[-2(2.25e-06)]_61 chrIV:368905-369315 6.94e-01 100 chrVII:661578-662010 2.87e-07 9_[+2(2.47e-06)]_15_[+1(1.61e-07)]_\ 34 chrX:36247-36347 6.58e-01 100 chrXIII:251740-252150 2.80e-02 39_[-2(8.07e-06)]_40 chrXII:628217-628602 2.31e-03 28_[+2(9.06e-07)]_51 chrXII:92384-92791 1.68e-04 15_[+2(8.12e-07)]_64 chrII:168776-169186 6.79e-01 100 chrII:332364-332715 2.83e-02 33_[-3(8.50e-06)]_1_[-3(4.37e-05)]_\ 36 chrVII:399284-399694 5.93e-01 100 chrXVI:642148-642558 1.18e-02 46_[-3(1.31e-05)]_39 chrX:120383-120483 6.07e-02 47_[-2(4.69e-05)]_32 chrVII:345906-346047 2.17e-01 100 chrI:68191-68601 1.02e-02 78_[-3(1.43e-05)]_7 chrIV:1201589-1201984 1.41e-11 18_[+2(1.52e-08)]_16_[+1(1.92e-10)]_\ 24 chrXII:1028272-1028564 1.94e-02 27_[-3(5.93e-06)]_2_[+3(4.37e-05)]_\ 41 chrV:424437-424847 8.68e-01 100 chrV:423143-423448 1.65e-02 24_[-3(4.46e-06)]_61 chrII:373387-373797 5.90e-01 100 chrVI:180799-181194 4.00e-09 37_[-1(1.47e-09)]_14_[-2(4.57e-07)]_\ 7 chrXI:615069-615479 9.28e-01 100 chrXV:882014-882424 9.49e-01 100 chrXIII:123686-124096 5.95e-01 100 chrIV:340208-340618 5.16e-01 100 chrX:220195-220295 4.51e-02 100 chrXVI:134963-135373 4.21e-01 100 chrVII:828516-828963 5.79e-09 43_[-1(5.22e-10)]_15_[-2(2.04e-06)] chrXV:663704-664032 1.56e-08 3_[-1(1.15e-08)]_17_[-2(2.15e-07)]_\ 38 chrXV:80864-81274 9.26e-01 100 chrIX:254229-254543 9.81e-03 21_[+3(2.99e-06)]_35_[+3(8.27e-05)]_\ 14 chrXII:404618-405028 2.10e-01 100 chrV:69084-69355 3.06e-04 10_[+3(4.25e-07)]_75 chrX:195388-195488 3.45e-01 100 chrXII:656845-657150 3.33e-06 33_[-2(6.14e-10)]_46 chrII:680603-680818 9.42e-01 100 chrXII:795162-795386 9.51e-02 100 chrXV:976261-976598 1.14e-03 46_[+2(1.24e-06)]_33 chrIX:324188-324404 1.40e-03 66_[-1(1.96e-07)]_13 chrVIII:175072-175350 7.78e-03 18_[-3(1.11e-05)]_67 chrV:78432-78590 5.50e-02 100 chrVII:883780-883949 8.36e-01 100 chrXIV:427025-427435 2.12e-01 100 chrXV:908570-908980 3.12e-01 100 chrIII:90834-91083 1.94e-01 100 chrVII:798277-798687 5.13e-01 100 chrXV:842128-842538 1.52e-01 56_[+1(6.47e-05)]_23 chrXIV:198163-198573 1.01e-01 59_[-2(9.72e-05)]_20 chrXVI:769086-769490 7.75e-06 38_[-2(1.05e-08)]_41 chrIV:236324-236734 7.97e-01 100 chrX:378210-378310 2.82e-04 54_[+2(2.15e-07)]_25 chrX:652255-652355 1.09e-01 100 chrXIV:230421-230536 3.57e-01 100 chrII:299955-300365 8.09e-01 100 chrX:531674-531774 9.96e-01 100 chrVII:422937-423317 2.31e-03 19_[+2(9.06e-07)]_60 chrVII:122123-122492 1.41e-11 16_[+2(1.52e-08)]_16_[+1(1.92e-10)]_\ 26 chrXIII:195968-196304 1.55e-03 58_[-2(8.12e-07)]_21 chrIV:992686-993027 4.00e-09 30_[+2(4.57e-07)]_14_[+1(1.47e-09)]_\ 14 chrX:663870-663970 1.66e-01 100 chrIV:524983-525393 8.58e-04 64_[+3(4.25e-07)]_21 chrII:301248-301658 9.64e-01 100 chrVIII:115974-116345 1.63e-09 7_[-1(9.31e-09)]_16_[-2(6.86e-08)]_\ 35 chrXIII:298484-298844 7.35e-01 100 chrV:422336-422746 6.49e-01 100 chrII:410211-410621 8.41e-01 100 chrIV:234392-234802 1.06e-01 100 chrVIII:62580-62924 2.81e-02 57_[+2(1.36e-05)]_22 chrXIII:253360-253593 5.03e-01 100 chrIV:199853-200263 4.75e-01 100 chrX:73716-73816 6.92e-01 100 chrX:157506-157606 3.68e-04 59_[+3(4.28e-08)]_2_[+3(8.60e-08)]_\ 9 chrXV:710086-710342 5.56e-04 41_[+2(1.09e-05)]_15_[+1(6.16e-05)]_\ 2 chrXIV:568211-568417 8.93e-01 100 chrXIV:281802-282212 6.33e-01 100 chrVII:920414-920586 1.08e-01 100 chrII:375833-376243 1.59e-01 100 chrXII:499086-499374 2.11e-01 100 chrIV:330990-331400 2.04e-01 100 chrV:61024-61434 5.87e-01 100 chrXIII:297624-297862 7.88e-02 100 chrVI:64074-64484 5.81e-01 100 chrIV:1489271-1489482 6.59e-01 100 chrVII:433315-433725 2.06e-01 100 chrXV:621941-622351 4.13e-01 100 chrVII:557595-558005 2.41e-02 100 chrXI:259776-259889 7.39e-01 100 chrII:680326-680695 6.72e-01 100 chrXVI:114491-114901 6.07e-02 100 chrX:523898-523998 4.29e-06 33_[-2(3.63e-10)]_46 chrIII:138692-138826 6.28e-01 100 chrIV:555859-556269 6.89e-01 100 chrXII:875207-875594 7.75e-06 30_[+2(1.05e-08)]_49 chrVII:809665-810075 5.06e-01 100 chrX:227833-227933 7.40e-01 100 chrXII:341160-341570 6.64e-01 100 chrXV:409544-409954 1.00e+00 100 chrXIV:500353-500770 3.86e-01 100 chrXIII:888244-888422 1.07e-01 54_[-2(9.22e-05)]_25 chrVII:736161-736543 5.79e-09 42_[+2(2.04e-06)]_15_[+1(5.22e-10)]_\ 1 chrVII:905355-905765 1.08e-02 74_[+3(1.43e-05)]_11 chrXI:69117-69527 4.51e-01 100 chrVII:609298-609524 6.75e-01 100 chrXIII:225386-225727 6.09e-04 36_[-3(7.54e-08)]_49 chrXV:911554-911964 5.79e-01 100 chrVII:399059-399189 6.84e-01 100 chrIV:356737-357147 9.87e-01 100 chrVII:277077-277384 1.88e-02 44_[-3(3.30e-06)]_41 chrIX:97155-97565 8.39e-01 100 chrXIII:362897-363284 2.36e-05 28_[+2(1.36e-05)]_15_[+1(4.94e-07)]_\ 15 chrXVI:586270-586680 8.15e-02 100 chrXII:108251-108661 1.72e-02 7_[-2(7.47e-06)]_72 chrXVI:378702-378923 2.00e-04 52_[+3(4.04e-06)]_10_[+3(2.03e-07)]_\ 8 chrVII:149142-149481 1.82e-03 56_[+3(3.69e-07)]_29 chrXVI:821616-821833 3.39e-01 100 chrVII:788262-788687 6.26e-01 100 chrIV:1401306-1401573 3.68e-02 26_[-3(1.21e-05)]_59 chrIV:926750-927160 1.03e-01 100 chrXV:494420-494602 6.25e-01 100 chrVI:226594-226926 7.71e-05 24_[-2(1.52e-08)]_55 chrIV:835796-836240 1.56e-01 100 chrVIII:35676-35918 3.50e-01 100 chrIV:437612-437968 4.29e-06 36_[+2(3.63e-10)]_43 chrIII:57894-58304 2.33e-01 100 chrIV:355778-356057 7.37e-02 100 chrIII:138464-138672 8.45e-02 100 chrVII:876237-876559 7.08e-05 50_[+2(1.52e-08)]_29 chrXIII:653315-653725 6.76e-01 100 chrII:235776-236186 2.15e-01 100 chrVII:439296-439706 9.99e-01 100 chrXV:282016-282328 4.68e-05 10_[+3(4.37e-05)]_21_[+2(4.57e-07)]_\ 33 chrXVI:880182-880541 4.68e-05 32_[-2(7.14e-09)]_47 chrVIII:554404-554550 9.32e-01 100 chrXII:253200-253610 8.63e-01 100 chrX:291099-291199 5.16e-03 13_[+3(6.49e-06)]_72 chrXIII:500179-500513 7.83e-01 100 chrX:90097-90197 4.00e-02 50_[-3(1.21e-05)]_35 chrIII:127558-127889 4.45e-04 47_[+2(1.88e-07)]_32 chrXVI:406223-406551 5.41e-03 31_[-3(9.44e-07)]_1_[-3(7.79e-05)]_\ 38 chrXVI:900041-900451 4.01e-02 100 chrVI:137394-137701 4.88e-04 36_[-2(1.88e-07)]_43 chrXIV:303190-303600 5.92e-01 100 chrIV:946142-946576 1.01e-06 7_[+2(2.47e-06)]_32_[+1(2.23e-07)]_\ 19 chrVII:480919-481246 8.03e-02 28_[-3(3.55e-05)]_57 chrVII:700500-701202 8.04e-01 100 chrXV:925098-925508 2.50e-01 100 chrVIII:505841-506153 1.24e-03 53_[+3(3.69e-07)]_32 chrIV:1359438-1359809 1.07e-03 20_[-3(2.03e-07)]_[-3(4.46e-06)]_50 chrXI:283935-284069 8.84e-02 100 chrIV:359434-359805 2.72e-11 12_[+2(1.05e-08)]_39_[+1(2.87e-09)]_\ 7 chrXIII:549852-550262 7.31e-01 100 chrXII:374186-374610 8.74e-09 11_[+2(1.52e-08)]_16_[+1(1.40e-07)]_\ 31 chrX:703288-703388 2.12e-03 31_[+3(8.50e-06)]_14_[+3(4.85e-07)]_\ 25 chrIV:886895-887305 6.96e-01 100 chrIV:1401433-1401843 8.55e-01 100 chrIV:1402729-1403238 4.50e-01 100 chrXVI:281486-281680 6.11e-01 100 chrXIII:624487-624897 1.54e-01 100 chrXV:891626-892036 2.70e-02 63_[+1(6.97e-05)]_16 chrXIII:168659-169108 8.17e-04 19_[+1(2.23e-07)]_60 chrX:73444-73544 1.42e-02 14_[-3(1.11e-05)]_71 chrIII:227785-228202 3.05e-06 3_[+2(3.86e-09)]_76 chrXVI:819350-819731 4.68e-05 43_[+2(7.14e-09)]_36 chrXV:113641-113970 5.55e-04 51_[+2(6.86e-08)]_28 chrXV:93652-93806 3.86e-01 100 chrXIV:355363-355773 1.63e-03 5_[+2(7.42e-05)]_35_[+3(1.68e-05)]_\ 24 chrV:434401-434763 2.36e-05 18_[-1(4.94e-07)]_15_[-2(1.36e-05)]_\ 25 chrIV:1175659-1176055 1.26e-07 26_[+2(1.24e-06)]_16_[+1(2.23e-07)]_\ 16 chrXIV:632449-632779 1.89e-08 39_[+2(1.88e-07)]_17_[+1(5.20e-08)]_\ 2 chrXV:579558-579968 4.46e-01 100 chrI:142720-143020 1.88e-01 100 chrII:613342-613752 5.39e-01 100 chrVIII:381377-381649 9.69e-01 100 chrIV:491058-491208 2.60e-02 45_[-3(7.12e-06)]_40 chrII:405708-406178 1.53e-08 25_[+1(5.22e-10)]_25_[+2(5.88e-06)]_\ 8 chrXII:806446-806601 2.60e-01 100 chrX:622441-622541 4.13e-01 100 chrXIII:20372-20782 2.68e-01 100 chrXV:514442-514852 6.53e-01 100 chrXIV:102553-102943 1.67e-08 22_[+2(1.88e-07)]_17_[+1(5.20e-08)]_\ 19 chrXVI:641389-641540 2.11e-01 100 chrXII:424038-424437 1.06e-01 100 chrXI:558814-558916 6.81e-02 100 chrX:354086-354186 3.11e-03 29_[+2(2.47e-06)]_50 chrXIII:67678-67864 1.06e-02 100 chrV:86410-86782 3.05e-06 62_[+2(3.63e-10)]_17 chrXI:99692-99998 3.41e-02 52_[-3(6.88e-05)]_33 chrII:167976-168177 1.24e-01 6_[-3(4.99e-05)]_79 chrXVI:280697-280912 9.23e-01 100 chrV:305818-306172 7.68e-03 37_[-3(1.95e-06)]_1_[-3(7.79e-05)]_\ 32 chrXVI:642767-643177 1.36e-01 32_[-2(6.27e-05)]_47 chrXV:28681-29091 1.18e-01 100 chrIV:1305473-1305807 4.29e-06 44_[+2(3.63e-10)]_35 chrIV:45430-45840 2.35e-01 100 chrXIII:297902-298121 7.36e-01 100 chrXV:110822-111150 3.50e-09 35_[-1(6.15e-10)]_15_[-2(2.25e-06)]_\ 8 chrVI:83530-83669 1.72e-01 100 chrI:71933-72179 7.50e-01 100 chrXV:832178-832652 9.57e-02 6_[-3(3.81e-05)]_79 chrXV:619141-619551 1.11e-02 62_[-2(2.20e-05)]_17 chrVIII:123593-124003 8.52e-02 100 chrXIV:374722-375044 7.42e-04 40_[+2(1.64e-07)]_39 chrXII:710564-710974 6.59e-04 11_[-3(1.07e-06)]_74 chrXV:161184-161348 1.76e-02 29_[+3(3.64e-06)]_56 chrII:326677-327033 5.37e-02 100 chrXII:369576-370368 3.23e-01 100 chrXVI:699980-700353 1.87e-02 28_[-3(1.82e-05)]_57 chrVII:310846-311099 7.10e-01 100 chrVII:405399-405707 6.99e-06 7_[+1(5.22e-10)]_72 chrXII:921627-921975 2.60e-02 100 chrIV:1245640-1246050 9.62e-01 100 chrIV:580082-580282 8.30e-01 100 chrXII:639722-639824 3.31e-01 100 chrIX:183331-183680 4.68e-05 32_[-2(7.14e-09)]_47 chrV:61686-62107 2.25e-07 53_[-1(1.47e-09)]_26 chrXII:404359-404769 2.77e-02 59_[-1(7.67e-05)]_20 chrIV:520814-521145 1.92e-04 47_[+2(2.25e-06)]_32 chrXII:639533-639773 3.57e-01 100 chrVI:210517-210861 5.32e-03 42_[-2(2.47e-06)]_37 chrIV:1256913-1257232 4.67e-05 [-3(7.79e-05)]_16_[-2(8.12e-07)]_48 chrIV:230484-230894 7.58e-02 100 chrXV:908774-909184 5.64e-01 100 chrXIV:569748-570111 4.68e-05 35_[-2(7.14e-09)]_44 chrV:483147-483557 1.31e-02 11_[-2(8.07e-06)]_68 chrXII:713152-713530 6.32e-03 80_[+3(8.39e-07)]_5 chrXIII:296818-297137 1.92e-04 36_[-3(2.46e-07)]_49 chrVII:806462-806577 1.08e-01 100 chrIV:1300961-1301266 1.36e-03 43_[-3(9.44e-07)]_42 chrVII:857241-857634 2.15e-04 78_[-2(9.06e-07)]_1 chrXVI:173006-173208 2.61e-01 100 chrX:58984-59084 4.15e-09 [-1(9.31e-09)]_16_[-2(6.86e-08)]_42 chrXII:1012174-1012311 2.07e-03 43_[-3(7.12e-06)]_42 chrVII:786951-787361 5.50e-01 100 chrXV:931654-932064 5.96e-02 100 chrXVI:431812-432222 7.23e-01 100 chrXII:592420-592784 5.16e-05 41_[-2(1.52e-08)]_38 chrXI:382184-382428 9.63e-04 46_[-3(8.39e-07)]_39 chrXV:79790-80108 4.65e-03 48_[+3(7.26e-07)]_37 chrIV:1238179-1238589 7.96e-01 100 chrIV:221878-222282 5.48e-01 100 chrIV:117216-117570 3.62e-02 24_[-3(1.43e-05)]_61 chrVII:310540-310874 1.18e-02 26_[-3(2.40e-06)]_[-3(7.79e-05)]_44 chrII:642894-643223 6.02e-06 8_[-1(5.19e-07)]_15_[-2(1.57e-05)]_\ 35 chrXVI:55910-56434 4.78e-04 56_[-1(1.84e-07)]_23 chrVIII:134206-134523 1.00e-08 11_[+2(2.25e-06)]_15_[+1(1.04e-08)]_\ 32 chrXV:487424-487630 3.66e-04 4_[+1(5.20e-08)]_75 chrII:89648-89950 1.81e-04 31_[+3(2.12e-05)]_5_[+3(2.97e-08)]_\ 34 chrVII:438610-438888 4.09e-03 35_[+3(4.89e-06)]_50 chrXIV:303059-303354 4.72e-01 100 chrXIII:747810-748128 2.67e-03 18_[-2(2.04e-06)]_61 chrXIV:525031-525240 2.03e-01 20_[-2(9.22e-05)]_59 chrVII:1000401-1000590 3.75e-04 10_[-3(8.39e-07)]_75 chrXII:523120-523530 9.32e-01 100 chrXII:731973-732283 6.26e-07 16_[+2(1.52e-08)]_37_[+3(3.31e-05)]_\ 11 chrXV:226522-226848 1.99e-03 20_[-2(4.57e-07)]_59 chrXII:728196-728606 1.32e-01 100 chrXVI:694845-695255 8.59e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************