******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SOK2/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrXI:518770-519298 1.0000 100 chrXV:92969-94317 1.0000 100 chrXI:618183-618330 1.0000 100 chrII:392466-392835 1.0000 100 chrXIII:754464-754723 1.0000 100 chrX:606097-606197 1.0000 100 chrVII:1004063-1004406 1.0000 100 chrXII:567991-568408 1.0000 100 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1.0000 100 chrX:227674-227774 1.0000 100 chrIV:980817-981207 1.0000 100 chrXII:691259-691608 1.0000 100 chrIII:315795-316209 1.0000 100 chrVII:1050081-1050651 1.0000 100 chrXV:409561-409806 1.0000 100 chrXVI:591071-591489 1.0000 100 chrIV:888942-889432 1.0000 100 chrII:405693-406189 1.0000 100 chrV:492204-492597 1.0000 100 chrXII:368233-368476 1.0000 100 chrVI:221791-222004 1.0000 100 chrVII:823326-823692 1.0000 100 chrXII:827477-827967 1.0000 100 chrVI:224826-225403 1.0000 100 chrXVI:622372-622834 1.0000 100 chrXVI:338747-339096 1.0000 100 chrX:195353-195453 1.0000 100 chrXI:355099-356591 1.0000 100 chrV:42080-42573 1.0000 100 chrXV:710066-710356 1.0000 100 chrX:58968-59068 1.0000 100 chrIV:1489058-1489953 1.0000 100 chrIX:382141-382631 1.0000 100 chrVIII:382939-383299 1.0000 100 chrVII:55860-56050 1.0000 100 chrXII:459511-460152 1.0000 100 chrXVI:642212-642664 1.0000 100 chrXIII:758961-759483 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SOK2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SOK2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SOK2/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 544 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 54400 N= 544 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.292 C 0.208 G 0.208 T 0.292 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SOK2/background): A 0.303 C 0.197 G 0.197 T 0.303 ******************************************************************************** ******************************************************************************** MOTIF YAAYCRDRRGRTCMBSGGTTCGATYCCS MEME-1 width = 28 sites = 46 llr = 923 E-value = 1.1e-163 ******************************************************************************** -------------------------------------------------------------------------------- Motif YAAYCRDRRGRTCMBSGGTTCGATYCCS MEME-1 Description -------------------------------------------------------------------------------- Simplified A 177::3257132:3::2::::2a1:::: pos.-specific C 421372:::2:18454::::a::25a74 probability G :1123443366::2347a:::8:2:::5 matrix T 5:15:132:1:72121::aa:::55:3: bits 2.3 * * * 2.1 * * * 1.9 * * * 1.6 ****** * Relative 1.4 * * ****** * Entropy 1.2 * * ******* ** (28.9 bits) 0.9 * * * * ******* **** 0.7 * ***** ******** **** 0.5 ***** ****** ********* **** 0.2 **************************** 0.0 ---------------------------- Multilevel TAATCGGAAGGTCCCGGGTTCGATTCCG consensus C CGATGG A TAGCA CC TC sequence G A T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAAYCRDRRGRTCMBSGGTTCGATYCCS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------------- chrIX:183305-183693 - 1 1.28e-12 ACCGTGCTAA TAACGCGGGGATCAGCGGTTCGATCCCG chrXVI:819334-819778 + 59 1.28e-12 ACCGTGCTAA TAACGCGGGGATCAGCGGTTCGATCCCG CTAGAGACCA chrVII:738942-739350 + 62 1.28e-12 ACCGTGCTAA TAACGCGGGGATCAGCGGTTCGATCCCG CTAGAGACCA chrIV:992668-993016 + 73 3.82e-12 TCCAACGTTG CCATCGTTGGGCCCCCGGTTCGATTCCG chrX:531647-531747 + 8 3.82e-12 AACGTTG CCATCGTTGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrVII:845463-845876 + 63 3.82e-12 TCCAACGTTG CCATCGTTGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrV:135287-135655 - 14 5.14e-12 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrIV:1352361-1352676 - 8 5.14e-12 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCCC CTACAGG chrXIII:480455-480851 - 28 5.14e-12 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrII:405693-406189 + 21 6.86e-12 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCC ATCGTGAGTG chrXI:162303-162726 - 33 6.86e-12 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCC ATCGTGAGTG chrX:374248-374348 - 67 6.86e-12 GACTTC TAATCAGAAGATTATGGGTTCGACCCCC ATCGTGAGTG chrVII:736141-736562 + 73 6.86e-12 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCC chrX:355193-355293 + 10 6.86e-12 TCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCC ATCGTGAGTG chrVII:823326-823692 + 59 2.64e-11 ATCTGCTTAA CACGCAGAACGTCCCCAGTTCGATCCTG GGCGAAATCA chrVII:412124-412564 - 10 2.64e-11 ATCTGCTTAA CACGCAGAACGTCCCCAGTTCGATCCTG GGCGAAATC chrXI:308011-308389 - 4 2.64e-11 ATCTGCTTAA CACGCAGAACGTCCCCAGTTCGATCCTG GGC chrV:469308-469638 + 70 2.64e-11 ATCTGCTTAA CACGCAGAACGTCCCCAGTTCGATCCTG GGC chrX:378215-378315 + 72 2.64e-11 ATCTGCTTAA CACGCAGAACGTCCCCAGTTCGATCCTG G chrXIII:420406-420840 - 25 2.64e-11 ATCTGCTTAA CACGCAGAACGTCCCCAGTTCGATCCTG GGCGAAATCA chrX:197184-197284 - 37 3.84e-11 GCTCCCTTAG CATGGGAGAGGTCTCCGGTTCGATTCCG GACTCGTCCA chrVIII:146064-146469 - 36 3.84e-11 GCTCCCTTAG CATGGGAGAGGTCTCCGGTTCGATTCCG GACTCGTCCA chrXVI:856725-857103 + 73 3.84e-11 GCTCCCTTAG CATGGGAGAGGTCTCCGGTTCGATTCCG chrVII:774177-774570 + 61 3.84e-11 GCTCCCTTAG CATGGGAGAGGTCTCCGGTTCGATTCCG GACTCGTCCA chrVII:401448-401610 - 58 4.34e-11 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCC CGTATCGGAG chrVII:541669-542091 + 54 4.34e-11 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCC CGTATCGGAG chrV:487212-487561 - 5 4.34e-11 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCC CGTA chrXIII:290624-291005 + 71 4.34e-11 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCC CG chrV:250250-250487 + 2 2.36e-10 T TGATCCGGACAACCCCGGTTCGAATCCG GGTAGGACCT chrVII:779454-779840 + 53 7.01e-10 TCCCACCCTT CCAAGGTGGGGACACGGGTTCGATTCTC GTACCGCTCA chrIII:295303-295791 + 22 7.70e-10 GCCACACTAG TAATGTGGAGATCATCGGTTCAAATCCG ATTGGAAGCA chrIV:434113-434469 - 33 7.70e-10 GCCACACTAG TAATGTGGAGATCATCGGTTCAAATCCG ATTGGAAGCA chrXV:438469-438911 + 61 1.58e-09 TTAAGCAAGG ATACCGAAATGTCAGGGGTTCGAGCCCC CTATGAGGAG chrVII:115338-115716 + 69 1.58e-09 TTAAGCAAGG ATACCGAAATGTCAGGGGTTCGAGCCCC CTAT chrVI:137283-137713 - 48 2.40e-09 GTGCGACTGT TAATCGCAAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrXV:976234-976652 + 63 2.61e-09 GTCAGTCTCA TAATCTGAAGGTCGAGAGTTCGAACCTC CCCTGGAGCA chrXVI:55895-56459 - 52 5.28e-09 AATAAGATTG CAATCGAAGGGTTGCAGGTTCAATTCCT GTCCGTTTCA chrXVI:744104-744497 + 68 6.59e-09 GTTGCACTTG TAATGCAAAGGTCGTTAGTTCAATTCTG ACAGG chrVII:1004063-1004406 + 66 6.59e-09 GTTGCACTTG TAATGCAAAGGTCGTTAGTTCAATTCTG ACAGGTG chrXVI:435744-436143 - 10 1.72e-08 AGCAGATTGC AAATCTGTTGGTCCTTAGTTCGATCCTG AGTGCGAGC chrXII:818445-818813 + 64 2.66e-08 TGCATTCTTC CGGTGGCTGTGATCCGGGTTCGAGTCCC GGGAGGAGC chrXIII:168643-169097 + 26 3.37e-08 TATCACTACG AAATCTTGAGATCGGGCGTTCGACTCGC CCCCGGGAGA chrV:492204-492597 - 12 4.01e-08 GTCTGGCTAC GAACCAGAAGATTCCAGGTTCAAGTCCT GGCGGGGAAG chrVII:319705-319993 + 16 8.44e-08 CACATCGTTG TGGCCGATGAAACCCTGGTTCGATTCTA GGAGATGGCA chrVII:110424-110829 - 59 8.44e-08 CACATCGTTG TGGCCGATGAAACCCTGGTTCGATTCTA GGAGATGGCA chrXIII:758961-759483 + 31 1.08e-07 TCTCCCGAGC CGATGCTTATTCCGCGGGTTCGATGCCG AAATAATTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAAYCRDRRGRTCMBSGGTTCGATYCCS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIX:183305-183693 1.3e-12 [-1]_72 chrXVI:819334-819778 1.3e-12 58_[+1]_14 chrVII:738942-739350 1.3e-12 61_[+1]_11 chrIV:992668-993016 3.8e-12 72_[+1] chrX:531647-531747 3.8e-12 7_[+1]_65 chrVII:845463-845876 3.8e-12 62_[+1]_10 chrV:135287-135655 5.1e-12 13_[-1]_59 chrIV:1352361-1352676 5.1e-12 7_[-1]_65 chrXIII:480455-480851 5.1e-12 27_[-1]_45 chrII:405693-406189 6.9e-12 20_[+1]_52 chrXI:162303-162726 6.9e-12 32_[-1]_40 chrX:374248-374348 6.9e-12 66_[-1]_6 chrVII:736141-736562 6.9e-12 72_[+1] chrX:355193-355293 6.9e-12 9_[+1]_63 chrVII:823326-823692 2.6e-11 58_[+1]_14 chrVII:412124-412564 2.6e-11 9_[-1]_63 chrXI:308011-308389 2.6e-11 3_[-1]_69 chrV:469308-469638 2.6e-11 69_[+1]_3 chrX:378215-378315 2.6e-11 71_[+1]_1 chrXIII:420406-420840 2.6e-11 24_[-1]_48 chrX:197184-197284 3.8e-11 36_[-1]_36 chrVIII:146064-146469 3.8e-11 35_[-1]_37 chrXVI:856725-857103 3.8e-11 72_[+1] chrVII:774177-774570 3.8e-11 60_[+1]_12 chrVII:401448-401610 4.3e-11 57_[-1]_15 chrVII:541669-542091 4.3e-11 53_[+1]_19 chrV:487212-487561 4.3e-11 4_[-1]_68 chrXIII:290624-291005 4.3e-11 70_[+1]_2 chrV:250250-250487 2.4e-10 1_[+1]_71 chrVII:779454-779840 7e-10 52_[+1]_20 chrIII:295303-295791 7.7e-10 21_[+1]_51 chrIV:434113-434469 7.7e-10 32_[-1]_40 chrXV:438469-438911 1.6e-09 60_[+1]_12 chrVII:115338-115716 1.6e-09 68_[+1]_4 chrVI:137283-137713 2.4e-09 47_[-1]_25 chrXV:976234-976652 2.6e-09 62_[+1]_10 chrXVI:55895-56459 5.3e-09 51_[-1]_21 chrXVI:744104-744497 6.6e-09 67_[+1]_5 chrVII:1004063-1004406 6.6e-09 65_[+1]_7 chrXVI:435744-436143 1.7e-08 9_[-1]_63 chrXII:818445-818813 2.7e-08 63_[+1]_9 chrXIII:168643-169097 3.4e-08 25_[+1]_47 chrV:492204-492597 4e-08 11_[-1]_61 chrVII:319705-319993 8.4e-08 15_[+1]_57 chrVII:110424-110829 8.4e-08 58_[-1]_14 chrXIII:758961-759483 1.1e-07 30_[+1]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAAYCRDRRGRTCMBSGGTTCGATYCCS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YAAYCRDRRGRTCMBSGGTTCGATYCCS width=28 seqs=46 chrIX:183305-183693 ( 1) TAACGCGGGGATCAGCGGTTCGATCCCG 1 chrXVI:819334-819778 ( 59) TAACGCGGGGATCAGCGGTTCGATCCCG 1 chrVII:738942-739350 ( 62) TAACGCGGGGATCAGCGGTTCGATCCCG 1 chrIV:992668-993016 ( 73) CCATCGTTGGGCCCCCGGTTCGATTCCG 1 chrX:531647-531747 ( 8) CCATCGTTGGGCCCCCGGTTCGATTCCG 1 chrVII:845463-845876 ( 63) CCATCGTTGGGCCCCCGGTTCGATTCCG 1 chrV:135287-135655 ( 14) TAATCATAAGGTTAGGGGTTCGAGCCCC 1 chrIV:1352361-1352676 ( 8) TAATCATAAGGTTAGGGGTTCGAGCCCC 1 chrXIII:480455-480851 ( 28) TAATCATAAGGTTAGGGGTTCGAGCCCC 1 chrII:405693-406189 ( 21) TAATCAGAAGATTATGGGTTCGACCCCC 1 chrXI:162303-162726 ( 33) TAATCAGAAGATTATGGGTTCGACCCCC 1 chrX:374248-374348 ( 67) TAATCAGAAGATTATGGGTTCGACCCCC 1 chrVII:736141-736562 ( 73) TAATCAGAAGATTATGGGTTCGACCCCC 1 chrX:355193-355293 ( 10) TAATCAGAAGATTATGGGTTCGACCCCC 1 chrVII:823326-823692 ( 59) CACGCAGAACGTCCCCAGTTCGATCCTG 1 chrVII:412124-412564 ( 10) CACGCAGAACGTCCCCAGTTCGATCCTG 1 chrXI:308011-308389 ( 4) CACGCAGAACGTCCCCAGTTCGATCCTG 1 chrV:469308-469638 ( 70) CACGCAGAACGTCCCCAGTTCGATCCTG 1 chrX:378215-378315 ( 72) CACGCAGAACGTCCCCAGTTCGATCCTG 1 chrXIII:420406-420840 ( 25) CACGCAGAACGTCCCCAGTTCGATCCTG 1 chrX:197184-197284 ( 37) CATGGGAGAGGTCTCCGGTTCGATTCCG 1 chrVIII:146064-146469 ( 36) CATGGGAGAGGTCTCCGGTTCGATTCCG 1 chrXVI:856725-857103 ( 73) CATGGGAGAGGTCTCCGGTTCGATTCCG 1 chrVII:774177-774570 ( 61) CATGGGAGAGGTCTCCGGTTCGATTCCG 1 chrVII:401448-401610 ( 58) TCACCGTGGAGACCGGGGTTCGACTCCC 1 chrVII:541669-542091 ( 54) TCACCGTGGAGACCGGGGTTCGACTCCC 1 chrV:487212-487561 ( 5) TCACCGTGGAGACCGGGGTTCGACTCCC 1 chrXIII:290624-291005 ( 71) TCACCGTGGAGACCGGGGTTCGACTCCC 1 chrV:250250-250487 ( 2) TGATCCGGACAACCCCGGTTCGAATCCG 1 chrVII:779454-779840 ( 53) CCAAGGTGGGGACACGGGTTCGATTCTC 1 chrIII:295303-295791 ( 22) TAATGTGGAGATCATCGGTTCAAATCCG 1 chrIV:434113-434469 ( 33) TAATGTGGAGATCATCGGTTCAAATCCG 1 chrXV:438469-438911 ( 61) ATACCGAAATGTCAGGGGTTCGAGCCCC 1 chrVII:115338-115716 ( 69) ATACCGAAATGTCAGGGGTTCGAGCCCC 1 chrVI:137283-137713 ( 48) TAATCGCAAGATCGTGAGTTCAACCCTC 1 chrXV:976234-976652 ( 63) TAATCTGAAGGTCGAGAGTTCGAACCTC 1 chrXVI:55895-56459 ( 52) CAATCGAAGGGTTGCAGGTTCAATTCCT 1 chrXVI:744104-744497 ( 68) TAATGCAAAGGTCGTTAGTTCAATTCTG 1 chrVII:1004063-1004406 ( 66) TAATGCAAAGGTCGTTAGTTCAATTCTG 1 chrXVI:435744-436143 ( 10) AAATCTGTTGGTCCTTAGTTCGATCCTG 1 chrXII:818445-818813 ( 64) CGGTGGCTGTGATCCGGGTTCGAGTCCC 1 chrXIII:168643-169097 ( 26) AAATCTTGAGATCGGGCGTTCGACTCGC 1 chrV:492204-492597 ( 12) GAACCAGAAGATTCCAGGTTCAAGTCCT 1 chrVII:319705-319993 ( 16) TGGCCGATGAAACCCTGGTTCGATTCTA 1 chrVII:110424-110829 ( 59) TGGCCGATGAAACCCTGGTTCGATTCTA 1 chrXIII:758961-759483 ( 31) CGATGCTTATTCCGCGGGTTCGATGCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAAYCRDRRGRTCMBSGGTTCGATYCCS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 28 n= 39712 bayes= 9.35861 E= 1.1e-163 -180 91 -317 78 115 -18 -85 -280 124 -59 -159 -180 -380 41 15 72 -1217 182 63 -1217 10 -37 107 -148 -34 -218 115 -10 66 -1217 82 -80 110 -1217 73 -380 -122 -37 168 -180 20 -1217 168 -380 -63 -118 -1217 124 -1217 195 -1217 -34 20 107 -37 -180 -380 122 52 -34 -280 107 115 -148 -34 -317 191 -1217 -1217 -1217 235 -1217 -1217 -1217 -1217 172 -1217 -1217 -1217 172 -1217 235 -1217 -1217 -100 -1217 211 -1217 172 -1217 -1217 -1217 -180 28 -37 78 -1217 128 -317 72 -1217 235 -1217 -1217 -1217 178 -317 0 -280 107 135 -280 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAAYCRDRRGRTCMBSGGTTCGATYCCS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 28 nsites= 46 E= 1.1e-163 0.086957 0.369565 0.021739 0.521739 0.673913 0.173913 0.108696 0.043478 0.717391 0.130435 0.065217 0.086957 0.021739 0.260870 0.217391 0.500000 0.000000 0.695652 0.304348 0.000000 0.326087 0.152174 0.413043 0.108696 0.239130 0.043478 0.434783 0.282609 0.478261 0.000000 0.347826 0.173913 0.652174 0.000000 0.326087 0.021739 0.130435 0.152174 0.630435 0.086957 0.347826 0.000000 0.630435 0.021739 0.195652 0.086957 0.000000 0.717391 0.000000 0.760870 0.000000 0.239130 0.347826 0.413043 0.152174 0.086957 0.021739 0.456522 0.282609 0.239130 0.043478 0.413043 0.434783 0.108696 0.239130 0.021739 0.739130 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.152174 0.000000 0.847826 0.000000 1.000000 0.000000 0.000000 0.000000 0.086957 0.239130 0.152174 0.521739 0.000000 0.478261 0.021739 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.673913 0.021739 0.304348 0.043478 0.413043 0.500000 0.043478 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAAYCRDRRGRTCMBSGGTTCGATYCCS MEME-1 regular expression -------------------------------------------------------------------------------- [TC]AA[TCG][CG][GA][GTA][AG][AG]G[GA]T[CT][CA][CGT][GC][GA]GTTCGA[TC][TC]C[CT][GC] -------------------------------------------------------------------------------- Time 290.75 secs. ******************************************************************************** ******************************************************************************** MOTIF GSBYBYKTGGCBYAGTBGKTARVGSSHYC MEME-2 width = 29 sites = 53 llr = 965 E-value = 2.8e-156 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSBYBYKTGGCBYAGTBGKTARVGSSHYC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::111:3:::1a2::::26541::322 pos.-specific C :52524::::744:::3::1:12154346 probability G 9531225:7a:3::8:4a61142745:11 matrix T 1155434a::335::a3:36311112442 bits 2.3 * * 2.1 * * 1.9 * * 1.6 * * * *** * Relative 1.4 * * * *** * Entropy 1.2 * **** *** * (26.3 bits) 0.9 ** **** *** ** ** 0.7 ** * ***** *** ** * *** 0.5 **** ************* ** *** * 0.2 ***************************** 0.0 ----------------------------- Multilevel GCTCTCGTGGCCTAGTGGGTAAAGCGTCC consensus GGTCTT A TTC T TATGC GCCT sequence C G G C G A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYBYKTGGCBYAGTBGKTARVGSSHYC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrX:197184-197284 - 71 3.63e-14 A GGGCGTGTGGCGTAGTCGGTAGCGCGCTC CCTTAGCATG chrVIII:146064-146469 - 70 3.63e-14 CA GGGCGTGTGGCGTAGTCGGTAGCGCGCTC CCTTAGCATG chrXVI:856725-857103 + 38 3.63e-14 AACAAGATTC GGGCGTGTGGCGTAGTCGGTAGCGCGCTC CCTTAGCATG chrVII:774177-774570 + 26 3.63e-14 TCAATTAATT GGGCGTGTGGCGTAGTCGGTAGCGCGCTC CCTTAGCATG chrXI:517779-518162 + 68 3.63e-14 TATCTACTAT GGGCGTGTGGCGTAGTCGGTAGCGCGCTC CCTT chrIX:183305-183693 - 36 3.86e-13 ACAAATTCCT GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrXVI:819334-819778 + 23 3.86e-13 ACAATAGAAT GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrXIV:569774-570101 - 25 3.86e-13 AGATAACAGT GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrXII:734637-734984 + 42 3.86e-13 AACAAAGTTT GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrVII:738942-739350 + 26 3.86e-13 GAAAAAAATA GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrVII:823326-823692 + 23 3.17e-11 CAATAAGAGT GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrVII:412124-412564 - 45 3.17e-11 TCAAAAAACT GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrXI:308011-308389 - 39 3.17e-11 ACAATTAAGT GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrV:469308-469638 + 34 3.17e-11 AGAAATAATT GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrV:438561-438834 + 53 3.17e-11 CAACAAATTA GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrX:378215-378315 + 36 3.17e-11 TAAATTAATA GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrXIII:420406-420840 - 60 3.17e-11 ACAAATAACA GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrXV:438469-438911 + 3 2.77e-10 CA TCCTTGTTAGCTCAGTTGGTAGAGCGTTC GGCTTTTAAG chrVII:115338-115716 + 11 2.77e-10 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTAGAGCGTTC GGCTTTTAAG chrXII:875209-875612 + 16 2.77e-10 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTAGAGCGTTC GGCTTTTAAG chrXVI:769040-769505 - 52 2.77e-10 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTAGAGCGTTC GGCTTTTAAG chrX:58968-59068 - 17 3.99e-10 TAAAATAGAA GCTTCTATGGCCAAGTTGGTAAGGCGCCA CACTAGTAAT chrVIII:115970-116372 - 30 3.99e-10 CACTATTAGA GCTTCTATGGCCAAGTTGGTAAGGCGCCA CACTAGTAAT chrXV:113639-113968 + 49 3.99e-10 CAGAGATTTA GCTTCTATGGCCAAGTTGGTAAGGCGCCA CACTAGTAAT chrIV:434113-434469 - 67 3.99e-10 CAGAA GCTTCTATGGCCAAGTTGGTAAGGCGCCA CACTAGTAAT chrV:135287-135655 - 48 6.38e-10 CAAGAAAAAA GCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTTAAT chrIV:1352361-1352676 - 42 6.38e-10 CAACGAAATA GCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTTAAT chrXIII:480455-480851 - 62 6.38e-10 ACAATAAGTA GCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTTAAT chrX:422760-422860 + 53 2.87e-09 TCCTTTGTAT GCTTCAGTAGCTCAGTAGGAAGAGCGTCA GTCTCATAAT chrXV:976234-976652 + 28 2.87e-09 TATTTTGTGC GCTTCAGTAGCTCAGTAGGAAGAGCGTCA GTCTCATAAT chrXVI:622372-622834 - 50 4.24e-09 ATTCTGATAT GCGGATTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrVIII:237710-238136 - 38 4.24e-09 CAAATAGTAA GCGGATTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrXIII:352111-352440 + 55 4.24e-09 ATGAATATAA GCGGATTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrIV:992668-993016 + 40 1.91e-08 ACAATTGTGA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrVII:845463-845876 + 30 1.91e-08 TAAATAACAA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrVII:930852-931194 - 22 1.91e-08 TAATCAGTGA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrVI:101223-101577 + 26 2.08e-08 ACAATAATTC GGGCGTGTGGTCTAGTGGTATGATTCTCG CTTTGGGCGA chrXIV:567970-568305 + 28 2.08e-08 TAAAATAATC GGGCGTGTGGTCTAGTGGTATGATTCTCG CTTTGGGCGA chrV:492204-492597 - 46 4.82e-08 GAACATCCTA TTCCTCGTGGCCCAATGGTCACGGCGTCT GGCTACGAAC chrX:233744-233844 + 58 4.82e-08 TATATTCTTG TTCCTCGTGGCCCAATGGTCACGGCGTCT GGCTACGAAC chrIV:619856-620202 - 34 4.82e-08 AGAAATCTTG TTCCTCGTGGCCCAATGGTCACGGCGTCT GGCTACGAAC chrVII:422914-423351 + 10 8.41e-08 CAGATAAGT GGTTGTTTGGCCGAGCGGTCTAAGGCGCC TGATTCAAGA chrVIII:466804-467162 + 57 9.60e-08 TGTATTTTTA GCCTCCTTAGCTTAGTGGTAGAGCGTTGC ACTTGTAATG chrXVI:744104-744497 + 34 9.60e-08 CAGTGTAAAA GCCTCCTTAGCTTAGTGGTAGAGCGTTGC ACTTGTAATG chrIII:168192-168566 - 15 9.60e-08 AAGAAGTCCT GGTCCTATAGTGTAGTGGTTATCACTTTC GGTTTTGATC chrIV:520799-521157 + 44 9.60e-08 TCCATTTTAG GGTCCTATAGTGTAGTGGTTATCACTTTC GGTTTTGATC chrVII:1004063-1004406 + 32 9.60e-08 TCAAGGGTTT GCCTCCTTAGCTTAGTGGTAGAGCGTTGC ACTTGTAATG chrVII:779454-779840 + 19 1.41e-07 AGTTAACCCC GGGCGGTTAGTGTAGTGGTTATCATCCCA CCCTTCCAAG chrXI:162303-162726 - 66 1.59e-07 ATATTA GCTCGCGTGGCGTAATGGCAACGCGTCTG ACTTCTAATC chrVII:736141-736562 + 39 1.59e-07 AATTTCAATA GCTCGCGTGGCGTAATGGCAACGCGTCTG ACTTCTAATC chrXV:594232-594596 - 33 1.90e-07 TGATTGAAAC GCGCAAGTGGTTCAGTGGTTAGAATTTAT GCTTCCCAAG chrIV:519611-519935 + 20 4.10e-07 GTGATTTTAC GGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTTAAGA chrXII:818445-818813 + 30 6.97e-07 AATTTATTAT GCTCCTCTAGTGCAATGGTTAGCATGCAT TCTTCCGGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYBYKTGGCBYAGTBGKTARVGSSHYC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:197184-197284 3.6e-14 70_[-2]_1 chrVIII:146064-146469 3.6e-14 69_[-2]_2 chrXVI:856725-857103 3.6e-14 37_[+2]_34 chrVII:774177-774570 3.6e-14 25_[+2]_46 chrXI:517779-518162 3.6e-14 67_[+2]_4 chrIX:183305-183693 3.9e-13 35_[-2]_36 chrXVI:819334-819778 3.9e-13 22_[+2]_49 chrXIV:569774-570101 3.9e-13 24_[-2]_47 chrXII:734637-734984 3.9e-13 41_[+2]_30 chrVII:738942-739350 3.9e-13 25_[+2]_46 chrVII:823326-823692 3.2e-11 22_[+2]_49 chrVII:412124-412564 3.2e-11 44_[-2]_27 chrXI:308011-308389 3.2e-11 38_[-2]_33 chrV:469308-469638 3.2e-11 33_[+2]_38 chrV:438561-438834 3.2e-11 52_[+2]_19 chrX:378215-378315 3.2e-11 35_[+2]_36 chrXIII:420406-420840 3.2e-11 59_[-2]_12 chrXV:438469-438911 2.8e-10 2_[+2]_69 chrVII:115338-115716 2.8e-10 10_[+2]_61 chrXII:875209-875612 2.8e-10 15_[+2]_56 chrXVI:769040-769505 2.8e-10 51_[-2]_20 chrX:58968-59068 4e-10 16_[-2]_55 chrVIII:115970-116372 4e-10 29_[-2]_42 chrXV:113639-113968 4e-10 48_[+2]_23 chrIV:434113-434469 4e-10 66_[-2]_5 chrV:135287-135655 6.4e-10 47_[-2]_24 chrIV:1352361-1352676 6.4e-10 41_[-2]_30 chrXIII:480455-480851 6.4e-10 61_[-2]_10 chrX:422760-422860 2.9e-09 52_[+2]_19 chrXV:976234-976652 2.9e-09 27_[+2]_44 chrXVI:622372-622834 4.2e-09 49_[-2]_22 chrVIII:237710-238136 4.2e-09 37_[-2]_34 chrXIII:352111-352440 4.2e-09 54_[+2]_17 chrIV:992668-993016 1.9e-08 39_[+2]_32 chrVII:845463-845876 1.9e-08 29_[+2]_42 chrVII:930852-931194 1.9e-08 21_[-2]_50 chrVI:101223-101577 2.1e-08 25_[+2]_46 chrXIV:567970-568305 2.1e-08 27_[+2]_44 chrV:492204-492597 4.8e-08 45_[-2]_26 chrX:233744-233844 4.8e-08 57_[+2]_14 chrIV:619856-620202 4.8e-08 33_[-2]_38 chrVII:422914-423351 8.4e-08 9_[+2]_62 chrVIII:466804-467162 9.6e-08 56_[+2]_15 chrXVI:744104-744497 9.6e-08 33_[+2]_38 chrIII:168192-168566 9.6e-08 14_[-2]_57 chrIV:520799-521157 9.6e-08 43_[+2]_28 chrVII:1004063-1004406 9.6e-08 31_[+2]_40 chrVII:779454-779840 1.4e-07 18_[+2]_53 chrXI:162303-162726 1.6e-07 65_[-2]_6 chrVII:736141-736562 1.6e-07 38_[+2]_33 chrXV:594232-594596 1.9e-07 32_[-2]_39 chrIV:519611-519935 4.1e-07 19_[+2]_52 chrXII:818445-818813 7e-07 29_[+2]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYBYKTGGCBYAGTBGKTARVGSSHYC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSBYBYKTGGCBYAGTBGKTARVGSSHYC width=29 seqs=53 chrX:197184-197284 ( 71) GGGCGTGTGGCGTAGTCGGTAGCGCGCTC 1 chrVIII:146064-146469 ( 70) GGGCGTGTGGCGTAGTCGGTAGCGCGCTC 1 chrXVI:856725-857103 ( 38) GGGCGTGTGGCGTAGTCGGTAGCGCGCTC 1 chrVII:774177-774570 ( 26) GGGCGTGTGGCGTAGTCGGTAGCGCGCTC 1 chrXI:517779-518162 ( 68) GGGCGTGTGGCGTAGTCGGTAGCGCGCTC 1 chrIX:183305-183693 ( 36) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrXVI:819334-819778 ( 23) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrXIV:569774-570101 ( 25) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrXII:734637-734984 ( 42) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrVII:738942-739350 ( 26) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrVII:823326-823692 ( 23) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrVII:412124-412564 ( 45) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrXI:308011-308389 ( 39) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrV:469308-469638 ( 34) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrV:438561-438834 ( 53) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrX:378215-378315 ( 36) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrXIII:420406-420840 ( 60) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrXV:438469-438911 ( 3) TCCTTGTTAGCTCAGTTGGTAGAGCGTTC 1 chrVII:115338-115716 ( 11) TCCTTGTTAGCTCAGTTGGTAGAGCGTTC 1 chrXII:875209-875612 ( 16) TCCTTGTTAGCTCAGTTGGTAGAGCGTTC 1 chrXVI:769040-769505 ( 52) TCCTTGTTAGCTCAGTTGGTAGAGCGTTC 1 chrX:58968-59068 ( 17) GCTTCTATGGCCAAGTTGGTAAGGCGCCA 1 chrVIII:115970-116372 ( 30) GCTTCTATGGCCAAGTTGGTAAGGCGCCA 1 chrXV:113639-113968 ( 49) GCTTCTATGGCCAAGTTGGTAAGGCGCCA 1 chrIV:434113-434469 ( 67) GCTTCTATGGCCAAGTTGGTAAGGCGCCA 1 chrV:135287-135655 ( 48) GCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrIV:1352361-1352676 ( 42) GCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrXIII:480455-480851 ( 62) GCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrX:422760-422860 ( 53) GCTTCAGTAGCTCAGTAGGAAGAGCGTCA 1 chrXV:976234-976652 ( 28) GCTTCAGTAGCTCAGTAGGAAGAGCGTCA 1 chrXVI:622372-622834 ( 50) GCGGATTTAGCTCAGTTGGGAGAGCGCCA 1 chrVIII:237710-238136 ( 38) GCGGATTTAGCTCAGTTGGGAGAGCGCCA 1 chrXIII:352111-352440 ( 55) GCGGATTTAGCTCAGTTGGGAGAGCGCCA 1 chrIV:992668-993016 ( 40) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrVII:845463-845876 ( 30) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrVII:930852-931194 ( 22) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrVI:101223-101577 ( 26) GGGCGTGTGGTCTAGTGGTATGATTCTCG 1 chrXIV:567970-568305 ( 28) GGGCGTGTGGTCTAGTGGTATGATTCTCG 1 chrV:492204-492597 ( 46) TTCCTCGTGGCCCAATGGTCACGGCGTCT 1 chrX:233744-233844 ( 58) TTCCTCGTGGCCCAATGGTCACGGCGTCT 1 chrIV:619856-620202 ( 34) TTCCTCGTGGCCCAATGGTCACGGCGTCT 1 chrVII:422914-423351 ( 10) GGTTGTTTGGCCGAGCGGTCTAAGGCGCC 1 chrVIII:466804-467162 ( 57) GCCTCCTTAGCTTAGTGGTAGAGCGTTGC 1 chrXVI:744104-744497 ( 34) GCCTCCTTAGCTTAGTGGTAGAGCGTTGC 1 chrIII:168192-168566 ( 15) GGTCCTATAGTGTAGTGGTTATCACTTTC 1 chrIV:520799-521157 ( 44) GGTCCTATAGTGTAGTGGTTATCACTTTC 1 chrVII:1004063-1004406 ( 32) GCCTCCTTAGCTTAGTGGTAGAGCGTTGC 1 chrVII:779454-779840 ( 19) GGGCGGTTAGTGTAGTGGTTATCATCCCA 1 chrXI:162303-162726 ( 66) GCTCGCGTGGCGTAATGGCAACGCGTCTG 1 chrVII:736141-736562 ( 39) GCTCGCGTGGCGTAATGGCAACGCGTCTG 1 chrXV:594232-594596 ( 33) GCGCAAGTGGTTCAGTGGTTAGAATTTAT 1 chrIV:519611-519935 ( 20) GGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrXII:818445-818813 ( 30) GCTCCTCTAGTGCAATGGTTAGCATGCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYBYKTGGCBYAGTBGKTARVGSSHYC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 39168 bayes= 6.52689 E= 2.8e-156 -1237 -1237 214 -120 -1237 132 120 -242 -400 32 53 58 -1237 126 -138 58 -120 20 20 45 -142 94 -21 16 -142 -338 126 38 -1237 -1237 -1237 172 -1 -1237 183 -1237 -1237 -1237 235 -1237 -1237 179 -1237 8 -1237 114 43 -1 -201 108 -238 64 172 -1237 -1237 -1237 -84 -1237 208 -1237 -1237 -338 -1237 169 -301 53 94 -1 -1237 -1237 235 -1237 -1237 -238 166 16 -42 -106 -179 104 108 -1237 -179 -1 58 -106 101 -242 45 20 20 -120 -169 -106 187 -169 -1237 148 87 -169 -1237 94 126 -101 -10 62 -238 31 -101 101 -138 31 -69 157 -138 -101 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYBYKTGGCBYAGTBGKTARVGSSHYC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 53 E= 2.8e-156 0.000000 0.000000 0.867925 0.132075 0.000000 0.490566 0.452830 0.056604 0.018868 0.245283 0.283019 0.452830 0.000000 0.471698 0.075472 0.452830 0.132075 0.226415 0.226415 0.415094 0.113208 0.377358 0.169811 0.339623 0.113208 0.018868 0.471698 0.396226 0.000000 0.000000 0.000000 1.000000 0.301887 0.000000 0.698113 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.679245 0.000000 0.320755 0.000000 0.433962 0.264151 0.301887 0.075472 0.415094 0.037736 0.471698 1.000000 0.000000 0.000000 0.000000 0.169811 0.000000 0.830189 0.000000 0.000000 0.018868 0.000000 0.981132 0.037736 0.283019 0.377358 0.301887 0.000000 0.000000 1.000000 0.000000 0.000000 0.037736 0.622642 0.339623 0.226415 0.094340 0.056604 0.622642 0.641509 0.000000 0.056604 0.301887 0.452830 0.094340 0.396226 0.056604 0.415094 0.226415 0.226415 0.132075 0.094340 0.094340 0.716981 0.094340 0.000000 0.547170 0.358491 0.094340 0.000000 0.377358 0.471698 0.150943 0.283019 0.301887 0.037736 0.377358 0.150943 0.396226 0.075472 0.377358 0.188679 0.584906 0.075472 0.150943 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYBYKTGGCBYAGTBGKTARVGSSHYC MEME-2 regular expression -------------------------------------------------------------------------------- G[CG][TGC][CT][TCG][CT][GT]T[GA]G[CT][CTG][TC]AGT[GTC]G[GT][TA][AT][AG][ACG]G[CG][GC][TCA][CT]C -------------------------------------------------------------------------------- Time 561.18 secs. ******************************************************************************** ******************************************************************************** MOTIF TKMTRRCCRTTAMACTATMWCGGAWRAWA MEME-3 width = 29 sites = 11 llr = 331 E-value = 5.9e-045 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKMTRRCCRTTAMACTATMWCGGAWRAWA MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::5:55::5::a5a::a:55:::a4395a pos.-specific C ::5:::aa::::5:a:::5:a:::2::2: probability G :5::55::5::::::::::::aa::511: matrix T a5:a:::::aa::::a:a:5::::52:3: bits 2.3 ** * *** 2.1 ** * *** 1.9 ** * *** 1.6 * * ** *** ***** **** * Relative 1.4 * * ** *** ***** **** * * Entropy 1.2 ** * ************* **** * * (43.4 bits) 0.9 ******************* **** * * 0.7 ************************ ** * 0.5 ************************ ** * 0.2 *************************** * 0.0 ----------------------------- Multilevel TGATAGCCGTTACACTATATCGGATGAAA consensus TC GA A A CA AA T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKMTRRCCRTTAMACTATMWCGGAWRAWA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXII:796981-797352 - 57 3.57e-15 AAGCGTGATG TGATAGCCGTTACACTATATCGGACGACA ACTACGGAGG chrV:487212-487561 + 43 9.76e-15 AAGCGTGATG TGATAGCCGTTACACTATATCGGATTAAA TTCATGAATT chrIII:82381-82665 + 37 1.13e-14 AAGCGTGATG TGATAGCCGTTACACTATATCGGATAACA AATTATTAAA chrII:405693-406189 - 64 2.14e-14 AGCGCCCA TTCTGACCATTAAACTATCACGGAAGAAA CAAAGCACTC chrVII:544418-544848 + 42 2.14e-14 CAAGCGCCCA TTCTGACCATTAAACTATCACGGAAGAAA TATCTGTGAA chrX:374248-374348 + 23 2.14e-14 CAAGCGCCCA TTCTGACCATTAAACTATCACGGAAGAAA CAAAGCACTC chrXIII:290624-291005 - 32 2.14e-14 AAGCGTGATG TGATAGCCGTTACACTATATCGGATTATA TTTCACTGTT chrX:355193-355293 - 53 2.14e-14 CAAGCGCCCA TTCTGACCATTAAACTATCACGGAAGAAA CAAAGCACTC chrXVI:210065-210439 + 38 2.36e-14 AAGCGTGATG TGATAGCCGTTACACTATATCGGACAATA ATTGGACAGA chrVII:541669-542091 - 15 3.22e-14 AAGCGTGATG TGATAGCCGTTACACTATATCGGATGGTA ATCTGTGAAA chrXII:426960-427300 - 47 1.14e-13 CAAGCGCCCA TTCTGACCATTAAACTATCACGGATAAGA AACACTGGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKMTRRCCRTTAMACTATMWCGGAWRAWA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:796981-797352 3.6e-15 56_[-3]_15 chrV:487212-487561 9.8e-15 42_[+3]_29 chrIII:82381-82665 1.1e-14 36_[+3]_35 chrII:405693-406189 2.1e-14 63_[-3]_8 chrVII:544418-544848 2.1e-14 41_[+3]_30 chrX:374248-374348 2.1e-14 22_[+3]_49 chrXIII:290624-291005 2.1e-14 31_[-3]_40 chrX:355193-355293 2.1e-14 52_[-3]_19 chrXVI:210065-210439 2.4e-14 37_[+3]_34 chrVII:541669-542091 3.2e-14 14_[-3]_57 chrXII:426960-427300 1.1e-13 46_[-3]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKMTRRCCRTTAMACTATMWCGGAWRAWA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKMTRRCCRTTAMACTATMWCGGAWRAWA width=29 seqs=11 chrXII:796981-797352 ( 57) TGATAGCCGTTACACTATATCGGACGACA 1 chrV:487212-487561 ( 43) TGATAGCCGTTACACTATATCGGATTAAA 1 chrIII:82381-82665 ( 37) TGATAGCCGTTACACTATATCGGATAACA 1 chrII:405693-406189 ( 64) TTCTGACCATTAAACTATCACGGAAGAAA 1 chrVII:544418-544848 ( 42) TTCTGACCATTAAACTATCACGGAAGAAA 1 chrX:374248-374348 ( 23) TTCTGACCATTAAACTATCACGGAAGAAA 1 chrXIII:290624-291005 ( 32) TGATAGCCGTTACACTATATCGGATTATA 1 chrX:355193-355293 ( 53) TTCTGACCATTAAACTATCACGGAAGAAA 1 chrXVI:210065-210439 ( 38) TGATAGCCGTTACACTATATCGGACAATA 1 chrVII:541669-542091 ( 15) TGATAGCCGTTACACTATATCGGATGGTA 1 chrXII:426960-427300 ( 47) TTCTGACCATTAAACTATCACGGATAAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKMTRRCCRTTAMACTATMWCGGAWRAWA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 39168 bayes= 11.3499 E= 5.9e-045 -1010 -1010 -1010 172 -1010 -1010 147 58 85 121 -1010 -1010 -1010 -1010 -1010 172 85 -1010 121 -1010 58 -1010 147 -1010 -1010 235 -1010 -1010 -1010 235 -1010 -1010 58 -1010 147 -1010 -1010 -1010 -1010 172 -1010 -1010 -1010 172 172 -1010 -1010 -1010 58 147 -1010 -1010 172 -1010 -1010 -1010 -1010 235 -1010 -1010 -1010 -1010 -1010 172 172 -1010 -1010 -1010 -1010 -1010 -1010 172 85 121 -1010 -1010 58 -1010 -1010 85 -1010 235 -1010 -1010 -1010 -1010 235 -1010 -1010 -1010 235 -1010 172 -1010 -1010 -1010 26 -11 -1010 58 -15 -1010 147 -74 158 -1010 -111 -1010 58 -11 -111 -15 172 -1010 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKMTRRCCRTTAMACTATMWCGGAWRAWA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 11 E= 5.9e-045 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.545455 0.454545 0.545455 0.454545 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.545455 0.000000 0.454545 0.000000 0.454545 0.000000 0.545455 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.454545 0.000000 0.545455 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.454545 0.545455 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.545455 0.454545 0.000000 0.000000 0.454545 0.000000 0.000000 0.545455 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.363636 0.181818 0.000000 0.454545 0.272727 0.000000 0.545455 0.181818 0.909091 0.000000 0.090909 0.000000 0.454545 0.181818 0.090909 0.272727 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKMTRRCCRTTAMACTATMWCGGAWRAWA MEME-3 regular expression -------------------------------------------------------------------------------- T[GT][AC]T[AG][GA]CC[GA]TTA[CA]ACTAT[AC][TA]CGGA[TA][GA]A[AT]A -------------------------------------------------------------------------------- Time 825.16 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXI:518770-519298 1.50e-01 100 chrXV:92969-94317 3.92e-01 100 chrXI:618183-618330 1.80e-02 50_[+2(1.91e-05)]_21 chrII:392466-392835 1.31e-01 100 chrXIII:754464-754723 8.03e-01 100 chrX:606097-606197 2.50e-01 100 chrVII:1004063-1004406 4.40e-10 31_[+2(9.60e-08)]_5_[+1(6.59e-09)]_\ 7 chrXII:567991-568408 7.32e-01 100 chrXIII:220166-220830 8.36e-01 100 chrVII:930852-931194 4.09e-05 21_[-2(1.91e-08)]_50 chrV:174700-175059 5.70e-01 100 chrIX:324117-324426 7.68e-01 100 chrVII:609321-610198 7.43e-01 100 chrXII:448353-448914 6.83e-01 100 chrXII:947388-947878 3.07e-01 100 chrXII:932120-932472 9.84e-01 100 chrVIII:236176-236420 1.40e-01 100 chrVII:700464-701239 1.00e+00 100 chrXV:28724-29214 3.62e-01 100 chrXVI:769040-769505 1.66e-07 51_[-2(2.77e-10)]_20 chrXII:712388-712598 4.49e-01 100 chrVII:738942-739350 1.07e-17 25_[+2(3.86e-13)]_7_[+1(1.28e-12)]_\ 11 chrVII:986732-987771 4.24e-01 100 chrXV:1027883-1028582 5.88e-02 100 chrXV:720350-720840 2.12e-01 100 chrVIII:125937-126260 8.01e-01 100 chrXI:334100-334872 8.10e-01 100 chrX:355193-355293 3.49e-21 9_[+1(6.86e-12)]_15_[-3(2.14e-14)]_\ 19 chrX:538405-538505 1.15e-04 42_[+2(1.69e-07)]_29 chrXIV:663333-663823 3.62e-01 100 chrV:122300-122790 6.19e-03 22_[+1(7.43e-05)]_50 chrXIII:420406-420840 1.02e-14 24_[-1(2.64e-11)]_7_[-2(3.17e-11)]_\ 12 chrV:237477-237967 5.89e-01 100 chrXVI:645235-645863 3.27e-01 100 chrXVI:921056-921518 6.60e-02 100 chrVI:89759-90249 3.96e-02 100 chrVIII:34357-35260 4.94e-01 100 chrV:306585-306810 5.16e-01 100 chrVI:137283-137713 2.09e-05 47_[-1(2.40e-09)]_25 chrXII:498785-499681 9.59e-01 100 chrXII:84060-84403 1.80e-01 100 chrIII:137737-138413 1.62e-01 100 chrXII:426960-427300 4.76e-12 46_[-3(1.14e-13)]_25 chrII:555789-556105 6.55e-01 100 chrXI:552247-552420 6.98e-01 100 chrIV:1238175-1238427 5.87e-01 100 chrVII:545270-545850 7.47e-01 100 chrXV:798013-798295 1.32e-02 100 chrXI:68119-68719 1.83e-01 100 chrXI:163962-164473 7.37e-01 100 chrVII:365186-365921 7.30e-01 100 chrV:430995-431533 7.78e-02 30_[-1(8.96e-05)]_42 chrVII:640887-641377 6.96e-01 100 chrVII:481398-482970 2.19e-01 100 chrXII:645859-646295 7.63e-01 100 chrXV:779735-781054 1.02e-01 100 chrVII:426916-427230 5.06e-01 100 chrXII:818445-818813 3.17e-10 29_[+2(6.97e-07)]_5_[+1(2.66e-08)]_\ 9 chrVII:784731-785221 3.99e-01 100 chrXIV:585455-586560 8.30e-01 100 chrXV:670912-671531 6.28e-01 100 chrII:604177-604696 7.15e-01 100 chrXV:867615-867865 6.77e-02 100 chrX:76235-76335 5.35e-01 100 chrVI:30759-31605 9.68e-01 100 chrX:703283-703383 9.52e-01 100 chrVII:533934-534225 6.03e-01 100 chrXVI:75411-75815 6.58e-01 100 chrXIII:222615-222820 9.85e-01 100 chrXII:522952-523145 4.70e-01 100 chrX:181910-182010 2.37e-01 100 chrXVI:576067-576351 8.34e-01 100 chrXIII:431699-432263 2.23e-01 100 chrXIV:575279-575880 9.93e-01 100 chrIX:332621-333294 5.08e-01 100 chrIV:385836-387405 9.32e-01 100 chrXV:979155-979496 9.45e-01 100 chrI:28463-28894 9.41e-01 100 chrXII:808891-809640 8.23e-01 100 chrXV:1028724-1029077 8.11e-01 100 chrXIV:443664-444154 7.89e-01 100 chrXII:713180-713539 9.60e-01 100 chrXII:805801-806989 3.97e-01 100 chrII:466215-466589 8.61e-01 100 chrXII:1028249-1028511 2.14e-01 100 chrXV:110116-110796 3.60e-01 100 chrXIV:62525-62743 2.96e-01 100 chrXIII:892776-893266 8.69e-01 100 chrV:424729-425292 5.80e-01 100 chrXV:594232-594596 3.47e-04 32_[-2(1.90e-07)]_39 chrXIII:732070-732358 9.98e-01 100 chrXVI:114390-114825 3.74e-01 100 chrIV:234252-234674 4.52e-01 100 chrI:141637-142099 4.23e-01 100 chrXIII:168643-169097 1.53e-04 25_[+1(3.37e-08)]_47 chrXV:778975-779465 9.54e-01 100 chrXI:430943-431220 3.86e-02 12_[-2(1.97e-05)]_59 chrII:414029-414519 2.21e-01 100 chrXII:875209-875612 1.66e-07 15_[+2(2.77e-10)]_56 chrXVI:282361-282599 8.62e-01 100 chrXV:758951-759574 5.29e-01 100 chrIV:579477-580570 2.23e-02 5_[-2(1.18e-05)]_66 chrIV:1362235-1362714 6.58e-01 100 chrXIII:408047-408883 6.74e-01 100 chrXII:722070-722560 7.42e-01 100 chrXII:36958-37171 4.76e-01 100 chrXII:611527-612183 3.66e-01 100 chrIV:366171-366388 6.94e-01 100 chrIV:357149-357761 8.21e-01 100 chrXVI:699976-700335 3.30e-01 100 chrVII:779454-779840 6.74e-11 18_[+2(1.41e-07)]_5_[+1(7.01e-10)]_\ 20 chrIV:520799-521157 7.87e-08 43_[+2(9.60e-08)]_28 chrXIII:296836-298887 4.06e-01 100 chrIV:1492503-1492993 1.87e-01 100 chrXVI:585725-586983 7.78e-01 100 chrX:663550-663650 3.97e-01 100 chrVI:64491-64927 7.02e-01 100 chrVII:323394-324274 6.92e-01 100 chrVII:701743-702233 9.92e-01 100 chrXV:347392-347747 6.37e-01 100 chrIV:1489976-1490502 7.35e-01 100 chrII:702092-702493 3.02e-01 100 chrVII:845463-845876 6.80e-13 29_[+2(1.91e-08)]_4_[+1(3.82e-12)]_\ 10 chrV:483346-483836 6.95e-01 100 chrXIII:123245-123735 8.40e-01 100 chrVII:998293-998783 8.14e-01 100 chrI:68312-68633 5.40e-01 100 chrXII:734637-734984 8.72e-09 41_[+2(3.86e-13)]_30 chrX:294545-294645 4.81e-02 100 chrVIII:455547-456111 5.42e-01 100 chrXII:602564-603054 3.15e-01 100 chrXII:924481-924971 6.29e-01 100 chrXIV:494526-494757 3.21e-01 100 chrVII:345845-346686 2.05e-01 100 chrXIII:480455-480851 2.42e-14 27_[-1(5.14e-12)]_6_[-2(6.38e-10)]_\ 10 chrII:371589-371835 9.19e-01 100 chrXV:978731-979128 7.36e-01 100 chrXVI:303200-303968 2.25e-01 100 chrIV:217412-217902 8.20e-01 100 chrXVI:67035-67290 2.49e-01 100 chrXI:364482-365247 6.26e-01 100 chrVIII:505858-506140 6.59e-01 100 chrII:681089-682170 5.88e-01 100 chrXV:312587-312937 5.50e-01 100 chrXIII:549962-550242 6.54e-01 100 chrIV:368832-369207 8.43e-01 100 chrXI:230031-230287 9.93e-01 100 chrXVI:75022-75288 2.05e-02 62_[-1(5.98e-05)]_10 chrX:378215-378315 1.03e-14 35_[+2(3.17e-11)]_7_[+1(2.64e-11)]_\ 1 chrXI:517779-518162 4.36e-10 67_[+2(3.63e-14)]_4 chrII:164976-166008 6.53e-01 100 chrXV:988248-988773 3.51e-01 100 chrXVI:718319-719470 4.26e-01 100 chrIV:1300975-1301269 5.11e-01 100 chrII:236641-236838 6.62e-01 100 chrIX:388552-389131 8.33e-01 100 chrXII:370301-371186 2.75e-01 100 chrXV:638853-639479 9.68e-01 100 chrXV:391413-392082 2.96e-01 100 chrXV:380784-380960 5.26e-01 100 chrXIV:569774-570101 9.93e-09 24_[-2(3.86e-13)]_47 chrIII:177125-177933 3.81e-01 100 chrXII:263748-264009 6.45e-01 100 chrII:255138-255568 1.85e-01 100 chrIII:142051-142274 3.17e-01 100 chrIV:519611-519935 8.20e-05 19_[+2(4.10e-07)]_17_[+1(9.46e-05)]_\ 7 chrXV:1004359-1004793 4.20e-01 100 chrX:73464-73564 9.89e-01 100 chrXIV:662228-662550 8.20e-02 100 chrX:348763-348863 1.29e-01 100 chrXVI:575181-575353 7.44e-01 100 chrXVI:403823-404313 4.87e-01 100 chrXIII:305948-307141 7.26e-01 100 chrIV:619856-620202 4.71e-06 33_[-2(4.82e-08)]_38 chrXIII:667901-668391 2.88e-01 100 chrIX:135417-135907 9.67e-01 100 chrIV:1352361-1352676 2.42e-14 7_[-1(5.14e-12)]_6_[-2(6.38e-10)]_\ 30 chrXVI:580532-581022 9.07e-01 100 chrVII:255112-255613 6.55e-01 100 chrIX:129769-130264 4.17e-01 100 chrXIII:282969-283115 6.92e-02 100 chrVII:914871-915178 6.36e-01 100 chrII:45058-45303 3.35e-01 100 chrX:120438-120538 4.90e-02 100 chrXII:721871-722361 4.56e-02 100 chrV:61062-62130 4.81e-01 100 chrVII:824334-824824 3.36e-01 100 chrVII:919800-920100 7.41e-01 100 chrX:123366-123466 5.56e-01 100 chrXVI:453428-453774 8.99e-01 100 chrIV:1493823-1494313 1.62e-01 100 chrVII:277617-278748 1.26e-01 100 chrXII:300467-300679 7.55e-01 100 chrXVI:689388-689846 2.63e-01 100 chrIV:550834-551270 4.03e-01 100 chrX:26203-26303 1.97e-01 100 chrVIII:554212-554624 6.37e-01 100 chrV:78713-79184 8.65e-01 100 chrIV:1450553-1451043 3.24e-01 100 chrIV:1236805-1237110 1.55e-01 100 chrVII:328418-328934 1.93e-01 100 chrI:198331-198656 4.64e-01 100 chrVII:787108-787308 8.45e-01 100 chrXII:234651-234839 7.52e-01 100 chrI:142109-143181 4.62e-01 100 chrXV:1010264-1010754 9.92e-01 100 chrIV:914265-914553 2.60e-02 100 chrI:222748-223238 9.74e-01 100 chrXV:976234-976652 4.05e-12 27_[+2(2.87e-09)]_6_[+1(2.61e-09)]_\ 10 chrXV:796925-797458 7.95e-01 100 chrXIV:663628-664118 2.06e-01 100 chrXI:260542-260898 5.77e-01 100 chrXIII:652024-653011 4.06e-01 100 chrVII:774177-774570 2.86e-17 25_[+2(3.63e-14)]_6_[+1(3.84e-11)]_\ 12 chrV:362692-363182 8.94e-01 100 chrIII:168192-168566 2.85e-06 14_[-2(9.60e-08)]_57 chrXI:309265-309755 2.12e-01 100 chrXIII:290624-291005 7.40e-19 31_[-3(2.14e-14)]_10_[+1(4.34e-11)]_\ 2 chrXII:446913-447403 7.70e-01 100 chrXV:988960-989636 1.05e-01 100 chrVII:989691-990506 8.33e-01 100 chrXII:366076-366506 2.12e-01 100 chrIX:255320-255708 6.94e-01 100 chrIV:722278-722869 7.60e-02 100 chrVII:736141-736562 9.87e-12 38_[+2(1.59e-07)]_5_[+1(6.86e-12)] chrXII:369227-370421 3.97e-01 100 chrVI:82114-83542 8.95e-01 100 chrXI:7756-8298 4.13e-01 100 chrXVI:431818-432392 1.67e-01 100 chrX:223919-224019 7.29e-01 100 chrXIII:667700-668190 8.30e-02 100 chrIV:465076-465571 4.84e-01 100 chrXV:619081-619536 5.29e-01 100 chrXV:444593-446184 1.63e-01 100 chrXII:348046-348713 7.16e-01 100 chrX:652047-652147 3.54e-02 43_[+2(9.85e-05)]_28 chrX:608795-608895 3.10e-01 100 chrII:87915-88651 8.36e-01 100 chrXIII:500114-500668 6.08e-01 100 chrIV:130595-130929 2.54e-01 100 chrXII:815137-815627 8.42e-01 100 chrX:640707-640807 9.70e-01 100 chrV:438561-438834 4.34e-07 52_[+2(3.17e-11)]_19 chrVII:366074-366713 9.86e-01 100 chrVIII:98357-98847 6.23e-01 100 chrV:266119-266539 8.39e-01 100 chrX:233744-233844 3.03e-04 57_[+2(4.82e-08)]_14 chrV:487212-487561 3.48e-19 4_[-1(4.34e-11)]_10_[+3(9.76e-15)]_\ 29 chrVIII:54495-54667 2.20e-01 100 chrIV:1354726-1354861 9.26e-01 100 chrXVI:280591-281689 8.27e-01 100 chrVII:439017-439957 5.99e-01 100 chrX:453693-453793 5.00e-01 100 chrXIII:472869-473224 2.30e-01 100 chrVII:672949-673439 7.81e-01 100 chrXV:382943-383589 5.67e-01 100 chrXI:146836-147358 7.58e-01 100 chrXV:678873-679152 4.15e-01 100 chrVII:148385-148875 2.46e-01 100 chrXV:424058-424713 2.92e-01 100 chrIV:434113-434469 1.48e-12 32_[-1(7.70e-10)]_6_[-2(3.99e-10)]_\ 5 chrXI:326186-327617 1.64e-01 100 chrXIII:272311-272801 5.61e-01 100 chrVII:649002-649314 4.54e-01 100 chrXVI:40083-40678 5.70e-02 100 chrXVI:856725-857103 1.41e-17 37_[+2(3.63e-14)]_6_[+1(3.84e-11)] chrIV:1345186-1345807 3.32e-01 100 chrXI:385139-385466 2.80e-02 100 chrVII:24176-24362 3.29e-01 100 chrXV:987386-987896 7.67e-01 100 chrII:135902-136493 1.48e-02 100 chrXVI:404815-405872 9.81e-01 100 chrXII:922159-922531 8.38e-01 100 chrII:612063-612553 7.39e-01 100 chrXIV:494040-494233 4.93e-01 100 chrV:397635-397858 7.39e-01 100 chrXVI:822852-823342 8.70e-03 69_[+3(1.59e-05)]_2 chrXI:614857-615330 3.15e-01 100 chrX:651309-651409 8.33e-01 100 chrX:531647-531747 3.18e-08 7_[+1(3.82e-12)]_65 chrIII:228493-229047 6.29e-01 100 chrVII:110424-110829 8.81e-04 58_[-1(8.44e-08)]_14 chrV:51732-52350 5.05e-01 100 chrXVI:210065-210439 2.74e-11 37_[+3(2.36e-14)]_34 chrXV:113639-113968 4.93e-06 48_[+2(3.99e-10)]_23 chrXIV:577078-577459 2.77e-01 100 chrII:391444-391893 6.65e-01 100 chrXVI:693538-694028 6.93e-01 100 chrXII:416564-417054 4.97e-01 100 chrVII:799854-800344 2.85e-01 100 chrII:375955-376262 3.38e-01 100 chrXIV:567970-568305 9.25e-06 27_[+2(2.08e-08)]_44 chrXII:796981-797352 5.80e-12 56_[-3(3.57e-15)]_15 chrV:261065-261555 1.02e-01 100 chrV:85069-86827 9.32e-01 100 chrVII:277091-277359 6.60e-01 100 chrXV:841646-841940 9.06e-01 100 chrXII:793721-795445 4.59e-01 100 chrVIII:170797-171287 9.45e-01 100 chrVIII:205984-206395 4.92e-01 100 chrVII:557634-558009 5.84e-02 29_[+1(7.84e-05)]_43 chrXII:506348-506838 6.12e-01 100 chrXI:322357-323070 1.81e-01 100 chrXIV:107248-107387 3.73e-01 100 chrV:66885-67380 9.95e-01 100 chrVII:555362-555648 5.13e-02 100 chrXV:836620-836951 1.25e-02 100 chrV:321991-322968 9.73e-01 100 chrIV:541193-541955 9.82e-01 100 chrXIV:276052-276184 7.64e-01 100 chrXII:515428-515918 5.94e-01 100 chrVII:319705-319993 5.29e-04 15_[+1(8.44e-08)]_57 chrXI:463219-463892 1.48e-01 100 chrIV:1080416-1080966 9.58e-01 100 chrIV:591631-592122 5.84e-03 57_[-1(5.51e-05)]_15 chrIV:1302188-1302405 4.58e-01 100 chrXV:903853-904786 1.66e-01 100 chrXIII:161950-162313 3.60e-01 100 chrX:139125-139225 6.19e-01 100 chrXVI:642982-643214 6.66e-01 100 chrIII:299044-299372 9.06e-01 100 chrIV:555749-556534 6.34e-02 100 chrXIV:442829-443304 3.85e-02 65_[+1(1.50e-05)]_7 chrXVI:927675-928206 1.15e-01 100 chrXI:618857-619162 8.61e-01 100 chrVII:324433-325024 7.45e-01 100 chrVII:541669-542091 1.09e-18 14_[-3(3.22e-14)]_10_[+1(4.34e-11)]_\ 19 chrX:382997-383097 1.68e-01 100 chrII:477055-477429 2.98e-01 100 chrVIII:379498-379924 2.76e-02 69_[-1(3.86e-05)]_3 chrVII:878558-878999 1.79e-02 58_[-2(5.87e-05)]_13 chrXII:720669-721159 4.20e-01 100 chrV:140933-141489 9.39e-01 100 chrXI:612387-612877 9.06e-01 100 chrVII:882386-883424 3.85e-01 100 chrXVI:214510-215230 6.90e-01 100 chrXIII:259010-259408 3.89e-03 51_[-2(1.08e-06)]_20 chrX:622580-622680 1.51e-01 100 chrXIII:752853-753343 3.96e-01 100 chrII:407636-408126 9.29e-01 100 chrVII:960199-960689 2.95e-01 100 chrVIII:146064-146469 2.84e-17 35_[-1(3.84e-11)]_6_[-2(3.63e-14)]_\ 2 chrV:117690-118258 8.81e-01 100 chrX:620634-620734 5.73e-01 100 chrXIV:506989-507479 3.66e-01 100 chrX:745099-745199 9.29e-01 100 chrXV:443707-444103 7.70e-01 100 chrXV:159224-160197 5.24e-01 100 chrX:197184-197284 2.04e-17 36_[-1(3.84e-11)]_6_[-2(3.63e-14)]_\ 1 chrXIV:783459-783714 6.71e-01 100 chrXVI:502627-503400 6.87e-01 100 chrXII:636756-638462 9.85e-01 100 chrIV:835829-836129 8.75e-01 100 chrXII:897859-898349 3.41e-01 100 chrX:291087-291187 7.06e-01 100 chrXIV:776689-777158 8.60e-01 100 chrIII:107174-107759 7.66e-01 100 chrVII:115338-115716 3.43e-13 10_[+2(2.77e-10)]_29_[+1(1.58e-09)]_\ 4 chrIV:129962-130578 9.77e-01 100 chrI:70030-70172 4.22e-01 100 chrVIII:531457-531778 7.54e-01 100 chrIV:1269909-1270650 1.01e-01 100 chrX:294815-294915 1.22e-01 45_[-3(9.06e-05)]_26 chrXIII:294125-294615 8.96e-01 100 chrIII:295303-295791 2.52e-06 21_[+1(7.70e-10)]_51 chrX:422760-422860 2.71e-05 52_[+2(2.87e-09)]_19 chrXVI:173001-174120 7.52e-01 100 chrXII:837594-839404 3.75e-01 100 chrI:71789-73253 9.88e-01 100 chrXV:897705-898195 5.86e-01 100 chrIV:308077-308318 4.43e-01 100 chrIX:177532-178074 4.44e-01 100 chrXIV:10198-10467 9.79e-02 100 chrIV:721667-722243 3.75e-01 100 chrVII:706063-706553 7.07e-01 100 chrV:23449-23982 2.91e-01 100 chrXII:825957-826447 4.38e-01 100 chrI:185693-186006 5.89e-01 100 chrV:441831-442597 6.42e-01 100 chrVII:706933-707245 2.61e-02 100 chrXV:900867-900992 4.68e-01 100 chrXI:430712-431025 3.52e-01 100 chrXII:1028991-1029481 4.63e-01 100 chrVIII:451161-453028 1.02e-01 100 chrVII:310804-312251 4.76e-01 100 chrXIV:499511-500911 4.30e-01 100 chrVII:592254-593032 1.77e-01 100 chrIV:76773-77191 4.33e-01 100 chrV:18835-19325 5.27e-01 100 chrVIII:121103-121735 8.21e-01 100 chrIV:1443858-1444028 8.15e-01 100 chrXIII:626130-626991 9.45e-01 100 chrX:374248-374348 3.49e-21 22_[+3(2.14e-14)]_15_[-1(6.86e-12)]_\ 6 chrVII:436930-437222 5.07e-01 100 chrV:143831-144118 5.46e-01 100 chrII:373142-373454 8.40e-01 100 chrVI:64108-64476 9.86e-01 100 chrVIII:401018-401333 8.79e-01 100 chrVI:101223-101577 3.39e-06 25_[+2(2.08e-08)]_46 chrXVI:694638-694880 3.41e-01 100 chrXII:201717-202553 7.64e-03 100 chrV:27258-27508 8.79e-01 100 chrXIII:352111-352440 1.36e-05 54_[+2(4.24e-09)]_17 chrIV:117201-117548 8.73e-01 100 chrIX:325695-326087 9.20e-01 100 chrII:88922-89412 9.59e-01 100 chrIV:929339-929829 2.59e-01 100 chrXIV:174057-174696 7.05e-01 100 chrXII:505319-505809 9.97e-01 100 chrX:608434-608534 1.96e-01 100 chrXVI:575270-575760 6.45e-01 100 chrXI:162303-162726 9.22e-12 32_[-1(6.86e-12)]_5_[-2(1.59e-07)]_\ 6 chrIII:178346-178735 9.76e-01 100 chrXV:168019-168394 5.81e-01 100 chrVIII:504741-505016 3.70e-01 100 chrVII:401448-401610 5.06e-07 57_[-1(4.34e-11)]_15 chrV:423148-423439 8.82e-01 100 chrVIII:16871-18257 7.11e-01 100 chrXIV:771767-772573 4.33e-01 100 chrXI:140727-141268 2.10e-01 100 chrVI:64491-64931 7.02e-01 100 chrXI:432139-432432 8.72e-01 100 chrV:250250-250487 4.38e-06 1_[+1(2.36e-10)]_71 chrXVI:831733-832223 9.25e-01 100 chrXIII:119307-119447 7.85e-01 100 chrXII:628211-628661 8.61e-01 100 chrXV:438469-438911 2.50e-12 2_[+2(2.77e-10)]_29_[+1(1.58e-09)]_\ 12 chrIV:1278620-1279052 6.00e-01 100 chrXV:80580-81159 1.84e-01 100 chrXII:796451-796814 8.42e-01 100 chrXVI:819334-819778 1.07e-17 22_[+2(3.86e-13)]_7_[+1(1.28e-12)]_\ 14 chrVI:223230-223621 5.52e-03 15_[+2(1.06e-05)]_56 chrXIV:715952-716684 8.96e-01 100 chrIV:992668-993016 4.05e-13 39_[+2(1.91e-08)]_4_[+1(3.82e-12)] chrXVI:744104-744497 2.29e-09 33_[+2(9.60e-08)]_5_[+1(6.59e-09)]_\ 5 chrVI:83813-84328 7.15e-01 100 chrV:166994-167484 4.09e-01 100 chrXIII:756502-756992 4.81e-01 100 chrII:332363-332706 9.05e-01 100 chrXIV:63150-63548 6.83e-01 100 chrIX:317067-317491 2.42e-01 100 chrIII:82381-82665 1.38e-11 36_[+3(1.13e-14)]_35 chrXII:282898-283743 4.28e-02 100 chrV:469308-469638 1.31e-14 33_[+2(3.17e-11)]_7_[+1(2.64e-11)]_\ 3 chrX:526101-526201 4.22e-01 100 chrVIII:292878-293173 8.70e-01 100 chrIV:221667-221810 1.09e-01 100 chrV:301419-301909 9.39e-01 100 chrVII:437821-438311 7.81e-01 100 chrXIV:108720-109210 2.45e-01 100 chrXIV:415311-415801 4.21e-01 100 chrXV:678027-678354 3.87e-02 54_[+1(7.23e-05)]_18 chrXIII:540078-540993 5.99e-01 100 chrXIII:163003-163493 1.58e-01 100 chrXVI:188598-188984 7.33e-01 100 chrXI:308011-308389 9.38e-15 3_[-1(2.64e-11)]_7_[-2(3.17e-11)]_\ 33 chrXIII:661487-662056 3.49e-01 100 chrIV:1450462-1450627 1.61e-01 100 chrVII:857224-857627 3.90e-02 12_[-1(1.50e-05)]_60 chrXI:107328-107818 9.47e-01 100 chrVII:316957-317380 9.10e-01 100 chrIV:308264-308754 2.47e-01 100 chrII:378808-379183 3.03e-01 100 chrVIII:105327-105580 1.54e-01 100 chrXIV:722531-723021 9.72e-01 100 chrXIII:888426-888916 9.39e-01 100 chrV:135287-135655 2.64e-14 13_[-1(5.14e-12)]_6_[-2(6.38e-10)]_\ 24 chrXV:426535-427025 2.81e-01 100 chrIV:1164211-1164484 9.16e-03 6_[-2(9.35e-05)]_65 chrXIII:550640-550982 5.57e-01 100 chrIV:358034-358524 6.85e-01 100 chrIV:1402633-1403446 8.18e-02 45_[+3(3.85e-05)]_26 chrXII:704141-704683 4.83e-01 100 chrIII:163480-163851 2.06e-01 100 chrXV:31535-32025 1.30e-01 100 chrVIII:466804-467162 2.29e-04 56_[+2(9.60e-08)]_15 chrXIII:226199-226350 2.07e-01 100 chrIX:183305-183693 1.07e-17 [-1(1.28e-12)]_7_[-2(3.86e-13)]_36 chrVIII:237710-238136 4.05e-05 37_[-2(4.24e-09)]_34 chrXI:141792-142282 5.67e-01 100 chrII:606355-606845 6.95e-01 100 chrVII:479489-481347 8.43e-01 100 chrXII:232050-234290 2.07e-01 100 chrVII:951337-951764 2.01e-01 100 chrII:406688-407178 4.28e-01 100 chrVII:412124-412564 1.31e-14 9_[-1(2.64e-11)]_7_[-2(3.17e-11)]_\ 27 chrVIII:411040-411698 4.49e-01 100 chrVIII:115970-116372 3.04e-06 29_[-2(3.99e-10)]_42 chrIII:227780-228215 9.18e-02 100 chrIV:437606-437995 3.89e-03 21_[+2(1.08e-06)]_50 chrIX:248650-249431 9.63e-01 100 chrXVI:55895-56459 4.82e-06 51_[-1(5.28e-09)]_21 chrXVI:828796-829473 6.23e-02 65_[+1(5.22e-05)]_7 chrXVI:435744-436143 4.09e-08 9_[-1(1.72e-08)]_5_[-2(6.29e-06)]_\ 29 chrXIII:253318-253622 9.22e-01 100 chrXIII:653537-653802 8.43e-01 100 chrXII:737722-738078 7.12e-01 100 chrVI:55052-55258 6.13e-01 100 chrX:156894-156994 5.69e-01 100 chrXII:720870-721360 1.53e-01 10_[+3(7.58e-05)]_61 chrXVI:731944-732280 2.58e-01 100 chrVII:422914-423351 1.62e-04 9_[+2(8.41e-08)]_62 chrXII:736623-737113 6.84e-02 100 chrVII:544418-544848 5.95e-15 3_[-1(2.20e-05)]_10_[+3(2.14e-14)]_\ 30 chrVII:287193-287637 1.79e-02 61_[-2(5.87e-05)]_10 chrXIV:351824-352881 1.40e-01 100 chrVII:556037-556322 9.84e-01 100 chrVIII:48160-48661 7.28e-01 100 chrX:391761-391861 4.03e-01 100 chrIV:340308-340516 3.18e-01 100 chrXI:612675-613165 4.14e-01 100 chrV:461722-462293 6.45e-01 100 chrII:143413-143903 4.00e-01 100 chrIV:1161456-1162068 1.21e-01 1_[+1(4.81e-05)]_71 chrII:697553-697842 9.62e-02 100 chrX:227674-227774 1.43e-01 100 chrIV:980817-981207 3.89e-03 64_[-2(1.08e-06)]_7 chrXII:691259-691608 6.85e-01 100 chrIII:315795-316209 2.19e-01 100 chrVII:1050081-1050651 8.66e-01 100 chrXV:409561-409806 9.98e-01 100 chrXVI:591071-591489 7.36e-01 100 chrIV:888942-889432 2.78e-01 100 chrII:405693-406189 3.49e-21 20_[+1(6.86e-12)]_15_[-3(2.14e-14)]_\ 8 chrV:492204-492597 8.64e-09 11_[-1(4.01e-08)]_6_[-2(4.82e-08)]_\ 26 chrXII:368233-368476 3.78e-01 100 chrVI:221791-222004 6.28e-01 100 chrVII:823326-823692 1.31e-14 22_[+2(3.17e-11)]_7_[+1(2.64e-11)]_\ 14 chrXII:827477-827967 6.53e-01 100 chrVI:224826-225403 6.45e-01 100 chrXVI:622372-622834 3.84e-05 49_[-2(4.24e-09)]_22 chrXVI:338747-339096 9.35e-02 100 chrX:195353-195453 7.31e-01 100 chrXI:355099-356591 3.08e-01 100 chrV:42080-42573 9.99e-01 100 chrXV:710066-710356 2.23e-02 100 chrX:58968-59068 7.77e-08 16_[-2(3.99e-10)]_55 chrIV:1489058-1489953 4.27e-01 100 chrIX:382141-382631 2.12e-01 100 chrVIII:382939-383299 8.69e-01 100 chrVII:55860-56050 5.82e-01 100 chrXII:459511-460152 1.79e-01 100 chrXVI:642212-642664 9.22e-01 100 chrXIII:758961-759483 4.37e-04 30_[+1(1.08e-07)]_42 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************