Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.082825 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.061876 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.094565 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.022431 Invoking: fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/seqs-sampled Finished invoke: name: sample_seqs status: 0 time: 0.068447 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background Finished invoke: name: bg status: 0 time: 0.019487 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 832.572024 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/seqs-shuffled Finished invoke: name: dreme status: 0 time: 113.944927 Invoking: centrimo -seqlen 590 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.284706 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.793218 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background -primary DMBSGGRRTCGAACCSVKRAYCYYMYGRT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.347577 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background -primary GSBBWBDTRGYBYARTGGKTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.413777 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background -primary GAKTMGAAAKCTYTTSSRCTKWGCCMSCGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.269544 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background -primary CTTCYW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.425506 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background -primary GCCTTAMC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.247282 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background -primary AACTKGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.313095 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.205747 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.264307 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background -primary AGACCAB /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.281509 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background -primary ATATRTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 0.245841 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background -primary AATCYGAT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml Finished invoke: name: spamo11 status: 0 time: 0.212635 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background -primary CCAAAGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml Finished invoke: name: spamo12 status: 0 time: 0.22615 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background -primary GTGATAGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml Finished invoke: name: spamo13 status: 0 time: 0.205685 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background -primary TCTCCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml Finished invoke: name: spamo14 status: 0 time: 0.232518 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background -primary RCTGCTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml Finished invoke: name: spamo15 status: 0 time: 0.255695 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/spamo_out_16 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background -primary AAGATTTC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml Finished invoke: name: spamo16 status: 0 time: 0.275744 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/spamo_out_17 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background -primary TTTCGGTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml Finished invoke: name: spamo17 status: 0 time: 0.211655 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/spamo_out_18 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background -primary AATSTTCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml Finished invoke: name: spamo18 status: 0 time: 0.239267 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/spamo_out_19 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background -primary ACAYCAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml Finished invoke: name: spamo19 status: 0 time: 0.209385 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/spamo_out_20 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background -primary GKTCAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml Finished invoke: name: spamo20 status: 0 time: 0.200813 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background --motif DMBSGGRRTCGAACCSVKRAYCYYMYGRT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa Finished invoke: name: fimo1 status: 0 time: 0.306677 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background --motif GSBBWBDTRGYBYARTGGKTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa Finished invoke: name: fimo2 status: 0 time: 0.295268 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background --motif GAKTMGAAAKCTYTTSSRCTKWGCCMSCGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa Finished invoke: name: fimo3 status: 0 time: 0.289044 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background --motif CTTCYW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa Finished invoke: name: fimo4 status: 0 time: 0.183833 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background --motif GCCTTAMC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa Finished invoke: name: fimo5 status: 0 time: 0.197533 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background --motif AACTKGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa Finished invoke: name: fimo6 status: 0 time: 0.185906 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa Finished invoke: name: fimo7 status: 0 time: 0.225789 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa Finished invoke: name: fimo8 status: 0 time: 0.209755 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background --motif AGACCAB /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa Finished invoke: name: fimo9 status: 0 time: 0.229664 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background --motif ATATRTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa Finished invoke: name: fimo10 status: 0 time: 0.182165 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background --motif AATCYGAT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa Finished invoke: name: fimo11 status: 0 time: 0.219181 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background --motif CCAAAGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa Finished invoke: name: fimo12 status: 0 time: 0.213304 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background --motif GTGATAGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa Finished invoke: name: fimo13 status: 0 time: 0.193497 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background --motif TCTCCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa Finished invoke: name: fimo14 status: 0 time: 0.209102 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background --motif RCTGCTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa Finished invoke: name: fimo15 status: 0 time: 0.209462 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/fimo_out_16 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background --motif AAGATTTC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa Finished invoke: name: fimo16 status: 0 time: 0.249325 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/fimo_out_17 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background --motif TTTCGGTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa Finished invoke: name: fimo17 status: 0 time: 0.224437 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/fimo_out_18 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background --motif AATSTTCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa Finished invoke: name: fimo18 status: 0 time: 0.190442 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/fimo_out_19 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background --motif ACAYCAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa Finished invoke: name: fimo19 status: 0 time: 0.232809 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/fimo_out_20 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background --motif GKTCAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/AWRI1631--SFL1.fa Finished invoke: name: fimo20 status: 0 time: 0.222705 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/summary.tsv Finished invoke: name: summary status: 0 time: 0.446081 Done