******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:227725-227825 1.0000 100 chrX:223937-224037 1.0000 100 chrV:163215-163805 1.0000 100 chrXV:110817-111183 1.0000 100 chrXVI:75670-75989 1.0000 100 chrI:141544-142008 1.0000 100 chrIV:437624-437956 1.0000 100 chrXII:806397-806952 1.0000 100 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chrIV:915530-915815 1.0000 100 chrVI:180825-181191 1.0000 100 chrXIV:567975-568289 1.0000 100 chrXVI:74965-75314 1.0000 100 chrXII:366105-366423 1.0000 100 chrIV:129934-130457 1.0000 100 chrX:374245-374345 1.0000 100 chrIV:1201581-1201988 1.0000 100 chrXII:953067-953452 1.0000 100 chrXVI:75229-75819 1.0000 100 chrX:355217-355317 1.0000 100 chrVII:600673-601263 1.0000 100 chrV:122509-122671 1.0000 100 chrXII:254416-255006 1.0000 100 chrXV:908664-908833 1.0000 100 chrXI:552293-552441 1.0000 100 chrVII:323685-324130 1.0000 100 chrXVI:822737-823327 1.0000 100 chrXII:673312-673902 1.0000 100 chrXII:784184-784567 1.0000 100 chrVI:31883-32298 1.0000 100 chrXV:282035-282356 1.0000 100 chrVIII:466807-467138 1.0000 100 chrXIV:374732-375061 1.0000 100 chrXIII:626251-626905 1.0000 100 chrIII:107195-107678 1.0000 100 chrIV:1302066-1302264 1.0000 100 chrXI:231297-231668 1.0000 100 chrV:237469-238059 1.0000 100 chrXV:905297-905887 1.0000 100 chrXVI:577202-577792 1.0000 100 chrXIII:162107-162339 1.0000 100 chrIV:118409-118732 1.0000 100 chrXIII:159421-159610 1.0000 100 chrXV:216362-216581 1.0000 100 chrXIV:96115-96466 1.0000 100 chrXIII:480472-480859 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 554 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 55400 N= 554 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.301 C 0.199 G 0.199 T 0.301 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--SFL1/background): A 0.308 C 0.192 G 0.192 T 0.308 ******************************************************************************** ******************************************************************************** MOTIF GSBBWBDTRGYBYARTGGKTA MEME-1 width = 21 sites = 103 llr = 1442 E-value = 1.1e-222 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSBBWBDTRGYBYARTGGKTA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::1323:4::::a3::::28 pos.-specific C :54423::::643::12:12: probability G 8422223:6a:31:7:6a4:: matrix T 2133434a::435::92:562 bits 2.4 * * 2.1 * * 1.9 * * 1.7 * * * * Relative 1.4 * * * * * Entropy 1.2 * **** *** * (20.2 bits) 1.0 ** **** *** * 0.7 ** **** ****** * 0.5 *** ************ * 0.2 **** **************** 0.0 --------------------- Multilevel GCCCTCTTGGCCTAGTGGTTA consensus TGTTATG A TGC A G sequence GG GA T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBWBDTRGYBYARTGGKTA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrIV:410210-410577 + 36 2.65e-09 TACAAATATT GGGCGTGTGGCGTAGTCGGTA GCGCGCTCCC chrXII:656810-657160 - 51 2.65e-09 CAAGAAAATT GGGCGTGTGGCGTAGTCGGTA GCGCGCTCCC chrVII:774176-774535 + 44 2.65e-09 TCAATTAATT GGGCGTGTGGCGTAGTCGGTA GCGCGCTCCC chrI:166164-166458 + 6 5.63e-09 GAGTT GGGCACATGGCGCAGTTGGTA GCGCGCTTCC chrV:311881-312308 - 31 5.63e-09 CAGAAATTCT GGGCACATGGCGCAGTTGGTA GCGCGCTTCC chrXIII:259054-259404 - 40 6.73e-09 AAGTTAGTAT GGCAACTTGGCCGAGTGGTTA AGGCGAAAGA chrXII:167844-168187 - 40 6.73e-09 ATAGTCATAT GGCAACTTGGCCGAGTGGTTA AGGCGAAAGA chrI:182441-182669 - 78 6.73e-09 TT GGCAACTTGGCCGAGTGGTTA AGGCGAAAGA chrII:226942-227278 + 15 6.73e-09 TGTAAAACGA GGCAACTTGGCCGAGTGGTTA AGGCGAAAGA chrIV:437624-437956 + 32 6.73e-09 TCATTAGTAA GGCAACTTGGCCGAGTGGTTA AGGCGAAAGA chrXIV:96115-96466 - 52 1.12e-08 TCCAACACAT GGGCGGTTAGTGTAGTGGTTA TCATCCCACC chrVII:779489-779814 + 15 1.12e-08 AGTTAACCCC GGGCGGTTAGTGTAGTGGTTA TCATCCCACC chrXV:110817-111183 - 63 1.12e-08 CAATTAACCC GGGCGGTTAGTGTAGTGGTTA TCATCCCACC chrXIII:480472-480859 - 58 1.55e-08 ACAATAAGTA GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrIV:1201581-1201988 + 16 1.55e-08 CAAATAAATA GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrVII:876241-876566 + 41 1.55e-08 TAATAGAATA GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrVI:226546-226905 - 65 1.55e-08 AGATTAAAAT GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrV:435641-435967 - 50 1.55e-08 AACAATAAGA GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrIX:300125-300491 - 22 1.55e-08 CAACGAAATA GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrVII:122163-122470 + 3 1.55e-08 TA GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrVII:185564-185925 - 72 1.55e-08 ACGAAATA GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrXI:162325-162740 - 56 1.81e-08 ACAAATATTA GCTCGCGTGGCGTAATGGCAA CGCGTCTGAC chrII:405691-406122 + 22 1.81e-08 ACAAATAGTA GCTCGCGTGGCGTAATGGCAA CGCGTCTGAC chrXIII:131709-132049 - 47 1.81e-08 AAGAAATTTA GCTCGCGTGGCGTAATGGCAA CGCGTCTGAC chrVII:828501-828989 - 79 1.81e-08 A GCTCGCGTGGCGTAATGGCAA CGCGTCTGAC chrV:443109-443421 - 40 2.11e-08 ATTAAAATTT GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrVII:738956-739328 + 30 2.11e-08 GAAAAAAATA GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrV:551200-551499 - 39 2.11e-08 ACAGATTACA GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrIX:183329-183705 - 26 2.11e-08 ACAAATTCCT GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrXII:1052018-1052223 - 54 2.11e-08 TCCTTTTCAT GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrXVI:819317-819794 + 24 2.11e-08 ACAATAGAAT GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrXIV:569798-570101 - 21 2.11e-08 AGATAACAGT GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrXI:46623-46974 - 38 2.44e-08 AAATTACTCA GCCCTTTTGGCCAAGTGGTAA GGCATCGCAC chrIII:227779-228162 + 22 2.44e-08 AAATCGAAAT GGCACTATGGCCGAGTGGTTA AGGCGAGAGA chrXVI:689394-689792 + 22 2.44e-08 GATTATTTTG GGCACTATGGCCGAGTGGTTA AGGCGACAGA chrIII:168214-168539 - 26 2.83e-08 AAGAAGTCCT GGTCCTATAGTGTAGTGGTTA TCACTTTCGG chrVIII:134199-134507 + 18 2.83e-08 AGTAAGTTCC GGTCCTATAGTGTAGTGGTTA TCACTTTCGG chrIV:802640-802961 - 32 2.83e-08 ATGAATTGTC GGTCCTATAGTGTAGTGGTTA TCACTTTCGG chrXV:282035-282356 + 19 3.27e-08 ACATGAAAGC GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrXII:784184-784567 + 29 3.27e-08 TTGTTCAACC GTCCCAGTGGCCGAGTGGTTA AGGCGATGCC chrVI:180825-181191 - 66 3.27e-08 CAAGAAATAA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrVII:930871-931208 - 14 3.27e-08 TAATCAGTGA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrX:396649-396749 - 21 3.27e-08 TCAAAAGTAA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrIV:992678-992997 + 45 3.27e-08 ACAATTGTGA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrXV:226509-226836 - 39 3.27e-08 AAGAAATTCA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrIII:142598-142936 - 34 3.27e-08 AAGATTACTA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrXVI:860216-860583 + 30 3.27e-08 TAAATAACAA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrIV:1150736-1151078 - 64 3.27e-08 AAGTGTTTCA GTCCCAGTGGCCGAGTGGTTA AGGCGATGCC chrXIV:567975-568289 + 33 3.76e-08 TAAAATAATC GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrVI:101229-101572 + 26 3.76e-08 ACAATAATTC GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrV:131001-131301 - 32 5.65e-08 ATAATTAAGA GGTTTTATAGTGTAGTGGTTA TCACTTTCGG chrXV:663684-664062 - 42 7.31e-08 AACAAATAGT GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrIV:1256899-1257250 - 35 7.31e-08 GATCTTCTTA GCGAAAGTGGTTCAGTGGTTA GAATTCATGC chrV:438547-438836 + 59 7.31e-08 CAACAAATTA GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrV:469308-469615 + 46 7.31e-08 AGAAATAATT GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrXI:308032-308373 - 45 7.31e-08 ACAATTAAGT GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrXIII:586544-586861 - 37 7.31e-08 AACTTACTAT GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrXIII:420445-420817 - 60 7.31e-08 ACAAATAACA GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrX:233755-233855 + 53 1.19e-07 TATATTCTTG TTCCTCGTGGCCCAATGGTCA CGGCGTCTGG chrXII:374163-374599 + 24 1.19e-07 ATAAATCTTG TTCCTCGTGGCCCAATGGTCA CGGCGTCTGG chrV:492235-492604 - 35 1.19e-07 GAACATCCTA TTCCTCGTGGCCCAATGGTCA CGGCGTCTGG chrIV:619840-620198 - 52 1.19e-07 AGAAATCTTG TTCCTCGTGGCCCAATGGTCA CGGCGTCTGG chrXV:340153-340503 - 73 1.19e-07 AGATCTG TTCCTCGTGGCCCAATGGTCA CGGCGTCTGG chrX:617751-617851 + 44 1.50e-07 AACAAACAAT GGGAGTTTGGCCGAGTGGTTT AAGGCGTCAG chrXVI:435794-436139 - 28 2.32e-07 TACAACAAAA GCTCGTATGGCGCAGTGGTAG CGCAGCAGAT chrXV:438461-438888 + 19 4.22e-07 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTA GAGCGTTCGG chrV:434440-434787 - 29 6.08e-07 TTGAAAAGTC GCCATCTTAGTATAGTGGTTA GTACACATCG chrX:58979-59079 - 32 6.08e-07 TAAAATAGAA GCTTCTATGGCCAAGTTGGTA AGGCGCCACA chrIX:174900-175203 + 30 6.08e-07 ACAAGTACGA GCTTCTATGGCCAAGTTGGTA AGGCGCCACA chrXV:353935-354274 - 39 6.08e-07 ACGGTTTACT GCTTCTATGGCCAAGTTGGTA AGGCGCCACA chrXIII:362910-363270 + 24 6.08e-07 ATCCAAGTTT GCCATCTTAGTATAGTGGTTA GTACACATCG chrXIV:374732-375061 + 23 7.23e-07 AGAAAAATAA GCGGACTTAGCTCAGTTGGGA GAGCGCCAGA chrIV:1095265-1095583 - 67 7.23e-07 TCTTATGTTA GCGGACTTAGCTCAGTTGGGA GAGCGCCAGA chrVII:205330-205766 + 23 7.23e-07 ACAAATAAGT GGTTGTTTGGCCGAGCGGTCT AAGGCGCCTG chrVII:857280-857624 - 69 7.23e-07 ACAAATAAGT GGTTGTTTGGCCGAGCGGTCT AAGGCGCCTG chrVII:422933-423337 + 7 7.23e-07 ATAAGT GGTTGTTTGGCCGAGCGGTCT AAGGCGCCTG chrII:326667-327009 - 57 7.86e-07 TCGAGTTCCG GGTCCAATGGTCCAGTGGTTC AAGACGTCGC chrVIII:466807-467138 + 68 8.54e-07 TGTATTTTTA GCCTCCTTAGCTTAGTGGTAG AGCGTTGCAC chrX:355217-355317 + 48 8.54e-07 CTTTGTTTCT TCCGTGATAGTTTAATGGTCA GAATGGGCGC chrX:374245-374345 - 39 8.54e-07 CTTTGTTTCT TCCGTGATAGTTTAATGGTCA GAATGGGCGC chrX:204554-204654 + 37 8.54e-07 AACATAAAAA TCCGTGATAGTTTAATGGTCA GAATGGGCGC chrX:541385-541485 + 19 8.54e-07 AGAAAGAAAA TCCGTGATAGTTTAATGGTCA GAATGGGCGC chrXIII:463413-463719 + 38 8.54e-07 CAGAAATTTG TCCGTGATAGTTTAATGGTCA GAATGGGCGC chrXV:571803-572127 + 43 8.54e-07 ACAATTAAAA TCCGTGATAGTTTAATGGTCA GAATGGGCGC chrIV:568706-569171 + 76 8.54e-07 CTTTGTTTCT TCCGTGATAGTTTAATGGTCA GAAT chrXII:426998-427322 + 22 8.54e-07 GTGTTTCTTA TCCGTGATAGTTTAATGGTCA GAATGGGCGC chrVII:544475-544840 - 21 8.54e-07 AGATATTTCT TCCGTGATAGTTTAATGGTCA GAATGGGCGC chrXII:818439-818786 + 47 1.00e-06 AATTTATTAT GCTCCTCTAGTGCAATGGTTA GCATGCATTC chrII:36226-36591 + 40 1.09e-06 TCAGTTGTAA GCGGATTTAGCTCAGTTGGGA GAGCGCCAGA chrXVI:622436-622844 - 21 1.09e-06 ATTCTGATAT GCGGATTTAGCTCAGTTGGGA GAGCGCCAGA chrIV:1017087-1017437 - 46 1.58e-06 CAAGGTACAA TCCGATGTAGTGTAACGGCTA TCACATCACG chrIV:519689-519865 + 16 1.95e-06 GTGATTTTAC GGAGGGTTGGCCGAGTGGTCT AAGGCGGCAG chrIII:82319-82662 - 73 2.38e-06 TTTGTTA TCCGATATAGTGTAACGGCTA TCACATCACG chrVII:541662-542096 + 21 2.38e-06 CAGATTACCA TCCGATATAGTGTAACGGCTA TCACATCACG chrV:176948-177299 + 26 2.38e-06 CCTACTTTGA TCCGATATAGTGTAACGGCTA TCACATCACG chrII:644992-645364 + 39 2.38e-06 TGAGTTATTA TCCGATATAGTGTAACGGCTA TCACATCACG chrXII:796986-797359 + 56 2.38e-06 GTAGTTGTCG TCCGATATAGTGTAACGGCTA TCACATCACG chrV:354739-355152 + 39 2.38e-06 TGTATTGTAA TCCGATATAGTGTAACGGCTA TCACATCACG chrIX:370211-370609 + 57 2.38e-06 TAGATTATAA TCCGATATAGTGTAACGGCTA TCACATCACG chrXV:976221-976643 + 39 2.70e-06 TATTTTGTGC GCTTCAGTAGCTCAGTAGGAA GAGCGTCAGT chrIV:1175666-1176063 + 15 2.70e-06 ACAAAACAAA GCTTCAGTAGCTCAGTAGGAA GAGCGTCAGT chrX:422803-422903 + 27 2.70e-06 TCCTTTGTAT GCTTCAGTAGCTCAGTAGGAA GAGCGTCAGT chrIV:1075353-1075711 - 42 3.05e-06 CCGTAATATT GTTCCAATAGTGTAGCGGCTA TCACGTTGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBWBDTRGYBYARTGGKTA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:410210-410577 2.7e-09 35_[+1]_44 chrXII:656810-657160 2.7e-09 50_[-1]_29 chrVII:774176-774535 2.7e-09 43_[+1]_36 chrI:166164-166458 5.6e-09 5_[+1]_74 chrV:311881-312308 5.6e-09 30_[-1]_49 chrXIII:259054-259404 6.7e-09 39_[-1]_40 chrXII:167844-168187 6.7e-09 39_[-1]_40 chrI:182441-182669 6.7e-09 77_[-1]_2 chrII:226942-227278 6.7e-09 14_[+1]_65 chrIV:437624-437956 6.7e-09 31_[+1]_48 chrXIV:96115-96466 1.1e-08 51_[-1]_28 chrVII:779489-779814 1.1e-08 14_[+1]_65 chrXV:110817-111183 1.1e-08 62_[-1]_17 chrXIII:480472-480859 1.5e-08 57_[-1]_22 chrIV:1201581-1201988 1.5e-08 15_[+1]_64 chrVII:876241-876566 1.5e-08 40_[+1]_39 chrVI:226546-226905 1.5e-08 64_[-1]_15 chrV:435641-435967 1.5e-08 49_[-1]_30 chrIX:300125-300491 1.5e-08 21_[-1]_58 chrVII:122163-122470 1.5e-08 2_[+1]_77 chrVII:185564-185925 1.5e-08 71_[-1]_8 chrXI:162325-162740 1.8e-08 55_[-1]_24 chrII:405691-406122 1.8e-08 21_[+1]_58 chrXIII:131709-132049 1.8e-08 46_[-1]_33 chrVII:828501-828989 1.8e-08 78_[-1]_1 chrV:443109-443421 2.1e-08 39_[-1]_40 chrVII:738956-739328 2.1e-08 29_[+1]_50 chrV:551200-551499 2.1e-08 38_[-1]_41 chrIX:183329-183705 2.1e-08 25_[-1]_54 chrXII:1052018-1052223 2.1e-08 53_[-1]_26 chrXVI:819317-819794 2.1e-08 23_[+1]_56 chrXIV:569798-570101 2.1e-08 20_[-1]_59 chrXI:46623-46974 2.4e-08 37_[-1]_42 chrIII:227779-228162 2.4e-08 21_[+1]_58 chrXVI:689394-689792 2.4e-08 21_[+1]_58 chrIII:168214-168539 2.8e-08 25_[-1]_54 chrVIII:134199-134507 2.8e-08 17_[+1]_62 chrIV:802640-802961 2.8e-08 31_[-1]_48 chrXV:282035-282356 3.3e-08 18_[+1]_61 chrXII:784184-784567 3.3e-08 28_[+1]_51 chrVI:180825-181191 3.3e-08 65_[-1]_14 chrVII:930871-931208 3.3e-08 13_[-1]_66 chrX:396649-396749 3.3e-08 20_[-1]_59 chrIV:992678-992997 3.3e-08 44_[+1]_35 chrXV:226509-226836 3.3e-08 38_[-1]_41 chrIII:142598-142936 3.3e-08 33_[-1]_46 chrXVI:860216-860583 3.3e-08 29_[+1]_50 chrIV:1150736-1151078 3.3e-08 63_[-1]_16 chrXIV:567975-568289 3.8e-08 32_[+1]_47 chrVI:101229-101572 3.8e-08 25_[+1]_54 chrV:131001-131301 5.7e-08 31_[-1]_48 chrXV:663684-664062 7.3e-08 41_[-1]_38 chrIV:1256899-1257250 7.3e-08 34_[-1]_45 chrV:438547-438836 7.3e-08 58_[+1]_21 chrV:469308-469615 7.3e-08 45_[+1]_34 chrXI:308032-308373 7.3e-08 44_[-1]_35 chrXIII:586544-586861 7.3e-08 36_[-1]_43 chrXIII:420445-420817 7.3e-08 59_[-1]_20 chrX:233755-233855 1.2e-07 52_[+1]_27 chrXII:374163-374599 1.2e-07 23_[+1]_56 chrV:492235-492604 1.2e-07 34_[-1]_45 chrIV:619840-620198 1.2e-07 51_[-1]_28 chrXV:340153-340503 1.2e-07 72_[-1]_7 chrX:617751-617851 1.5e-07 43_[+1]_36 chrXVI:435794-436139 2.3e-07 27_[-1]_52 chrXV:438461-438888 4.2e-07 18_[+1]_61 chrV:434440-434787 6.1e-07 28_[-1]_51 chrX:58979-59079 6.1e-07 31_[-1]_48 chrIX:174900-175203 6.1e-07 29_[+1]_50 chrXV:353935-354274 6.1e-07 38_[-1]_41 chrXIII:362910-363270 6.1e-07 23_[+1]_56 chrXIV:374732-375061 7.2e-07 22_[+1]_57 chrIV:1095265-1095583 7.2e-07 66_[-1]_13 chrVII:205330-205766 7.2e-07 22_[+1]_57 chrVII:857280-857624 7.2e-07 68_[-1]_11 chrVII:422933-423337 7.2e-07 6_[+1]_73 chrII:326667-327009 7.9e-07 56_[-1]_23 chrVIII:466807-467138 8.5e-07 67_[+1]_12 chrX:355217-355317 8.5e-07 47_[+1]_32 chrX:374245-374345 8.5e-07 38_[-1]_41 chrX:204554-204654 8.5e-07 36_[+1]_43 chrX:541385-541485 8.5e-07 18_[+1]_61 chrXIII:463413-463719 8.5e-07 37_[+1]_42 chrXV:571803-572127 8.5e-07 42_[+1]_37 chrIV:568706-569171 8.5e-07 75_[+1]_4 chrXII:426998-427322 8.5e-07 21_[+1]_58 chrVII:544475-544840 8.5e-07 20_[-1]_59 chrXII:818439-818786 1e-06 46_[+1]_33 chrII:36226-36591 1.1e-06 39_[+1]_40 chrXVI:622436-622844 1.1e-06 20_[-1]_59 chrIV:1017087-1017437 1.6e-06 45_[-1]_34 chrIV:519689-519865 1.9e-06 15_[+1]_64 chrIII:82319-82662 2.4e-06 72_[-1]_7 chrVII:541662-542096 2.4e-06 20_[+1]_59 chrV:176948-177299 2.4e-06 25_[+1]_54 chrII:644992-645364 2.4e-06 38_[+1]_41 chrXII:796986-797359 2.4e-06 55_[+1]_24 chrV:354739-355152 2.4e-06 38_[+1]_41 chrIX:370211-370609 2.4e-06 56_[+1]_23 chrXV:976221-976643 2.7e-06 38_[+1]_41 chrIV:1175666-1176063 2.7e-06 14_[+1]_65 chrX:422803-422903 2.7e-06 26_[+1]_53 chrIV:1075353-1075711 3.1e-06 41_[-1]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBWBDTRGYBYARTGGKTA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSBBWBDTRGYBYARTGGKTA width=21 seqs=103 chrIV:410210-410577 ( 36) GGGCGTGTGGCGTAGTCGGTA 1 chrXII:656810-657160 ( 51) GGGCGTGTGGCGTAGTCGGTA 1 chrVII:774176-774535 ( 44) GGGCGTGTGGCGTAGTCGGTA 1 chrI:166164-166458 ( 6) GGGCACATGGCGCAGTTGGTA 1 chrV:311881-312308 ( 31) GGGCACATGGCGCAGTTGGTA 1 chrXIII:259054-259404 ( 40) GGCAACTTGGCCGAGTGGTTA 1 chrXII:167844-168187 ( 40) GGCAACTTGGCCGAGTGGTTA 1 chrI:182441-182669 ( 78) GGCAACTTGGCCGAGTGGTTA 1 chrII:226942-227278 ( 15) GGCAACTTGGCCGAGTGGTTA 1 chrIV:437624-437956 ( 32) GGCAACTTGGCCGAGTGGTTA 1 chrXIV:96115-96466 ( 52) GGGCGGTTAGTGTAGTGGTTA 1 chrVII:779489-779814 ( 15) GGGCGGTTAGTGTAGTGGTTA 1 chrXV:110817-111183 ( 63) GGGCGGTTAGTGTAGTGGTTA 1 chrXIII:480472-480859 ( 58) GCCTTGTTGGCGCAATCGGTA 1 chrIV:1201581-1201988 ( 16) GCCTTGTTGGCGCAATCGGTA 1 chrVII:876241-876566 ( 41) GCCTTGTTGGCGCAATCGGTA 1 chrVI:226546-226905 ( 65) GCCTTGTTGGCGCAATCGGTA 1 chrV:435641-435967 ( 50) GCCTTGTTGGCGCAATCGGTA 1 chrIX:300125-300491 ( 22) GCCTTGTTGGCGCAATCGGTA 1 chrVII:122163-122470 ( 3) GCCTTGTTGGCGCAATCGGTA 1 chrVII:185564-185925 ( 72) GCCTTGTTGGCGCAATCGGTA 1 chrXI:162325-162740 ( 56) GCTCGCGTGGCGTAATGGCAA 1 chrII:405691-406122 ( 22) GCTCGCGTGGCGTAATGGCAA 1 chrXIII:131709-132049 ( 47) GCTCGCGTGGCGTAATGGCAA 1 chrVII:828501-828989 ( 79) GCTCGCGTGGCGTAATGGCAA 1 chrV:443109-443421 ( 40) GGTCTCTTGGCCCAGTTGGTT 1 chrVII:738956-739328 ( 30) GGTCTCTTGGCCCAGTTGGTT 1 chrV:551200-551499 ( 39) GGTCTCTTGGCCCAGTTGGTT 1 chrIX:183329-183705 ( 26) GGTCTCTTGGCCCAGTTGGTT 1 chrXII:1052018-1052223 ( 54) GGTCTCTTGGCCCAGTTGGTT 1 chrXVI:819317-819794 ( 24) GGTCTCTTGGCCCAGTTGGTT 1 chrXIV:569798-570101 ( 21) GGTCTCTTGGCCCAGTTGGTT 1 chrXI:46623-46974 ( 38) GCCCTTTTGGCCAAGTGGTAA 1 chrIII:227779-228162 ( 22) GGCACTATGGCCGAGTGGTTA 1 chrXVI:689394-689792 ( 22) GGCACTATGGCCGAGTGGTTA 1 chrIII:168214-168539 ( 26) GGTCCTATAGTGTAGTGGTTA 1 chrVIII:134199-134507 ( 18) GGTCCTATAGTGTAGTGGTTA 1 chrIV:802640-802961 ( 32) GGTCCTATAGTGTAGTGGTTA 1 chrXV:282035-282356 ( 19) GCGCAAGTGGTTTAGTGGTAA 1 chrXII:784184-784567 ( 29) GTCCCAGTGGCCGAGTGGTTA 1 chrVI:180825-181191 ( 66) GCGCAAGTGGTTTAGTGGTAA 1 chrVII:930871-931208 ( 14) GCGCAAGTGGTTTAGTGGTAA 1 chrX:396649-396749 ( 21) GCGCAAGTGGTTTAGTGGTAA 1 chrIV:992678-992997 ( 45) GCGCAAGTGGTTTAGTGGTAA 1 chrXV:226509-226836 ( 39) GCGCAAGTGGTTTAGTGGTAA 1 chrIII:142598-142936 ( 34) GCGCAAGTGGTTTAGTGGTAA 1 chrXVI:860216-860583 ( 30) GCGCAAGTGGTTTAGTGGTAA 1 chrIV:1150736-1151078 ( 64) GTCCCAGTGGCCGAGTGGTTA 1 chrXIV:567975-568289 ( 33) GGGCGTGTGGTCTAGTGGTAT 1 chrVI:101229-101572 ( 26) GGGCGTGTGGTCTAGTGGTAT 1 chrV:131001-131301 ( 32) GGTTTTATAGTGTAGTGGTTA 1 chrXV:663684-664062 ( 42) GGTTTCGTGGTCTAGTCGGTT 1 chrIV:1256899-1257250 ( 35) GCGAAAGTGGTTCAGTGGTTA 1 chrV:438547-438836 ( 59) GGTTTCGTGGTCTAGTCGGTT 1 chrV:469308-469615 ( 46) GGTTTCGTGGTCTAGTCGGTT 1 chrXI:308032-308373 ( 45) GGTTTCGTGGTCTAGTCGGTT 1 chrXIII:586544-586861 ( 37) GGTTTCGTGGTCTAGTCGGTT 1 chrXIII:420445-420817 ( 60) GGTTTCGTGGTCTAGTCGGTT 1 chrX:233755-233855 ( 53) TTCCTCGTGGCCCAATGGTCA 1 chrXII:374163-374599 ( 24) TTCCTCGTGGCCCAATGGTCA 1 chrV:492235-492604 ( 35) TTCCTCGTGGCCCAATGGTCA 1 chrIV:619840-620198 ( 52) TTCCTCGTGGCCCAATGGTCA 1 chrXV:340153-340503 ( 73) TTCCTCGTGGCCCAATGGTCA 1 chrX:617751-617851 ( 44) GGGAGTTTGGCCGAGTGGTTT 1 chrXVI:435794-436139 ( 28) GCTCGTATGGCGCAGTGGTAG 1 chrXV:438461-438888 ( 19) TCCTTGTTAGCTCAGTTGGTA 1 chrV:434440-434787 ( 29) GCCATCTTAGTATAGTGGTTA 1 chrX:58979-59079 ( 32) GCTTCTATGGCCAAGTTGGTA 1 chrIX:174900-175203 ( 30) GCTTCTATGGCCAAGTTGGTA 1 chrXV:353935-354274 ( 39) GCTTCTATGGCCAAGTTGGTA 1 chrXIII:362910-363270 ( 24) GCCATCTTAGTATAGTGGTTA 1 chrXIV:374732-375061 ( 23) GCGGACTTAGCTCAGTTGGGA 1 chrIV:1095265-1095583 ( 67) GCGGACTTAGCTCAGTTGGGA 1 chrVII:205330-205766 ( 23) GGTTGTTTGGCCGAGCGGTCT 1 chrVII:857280-857624 ( 69) GGTTGTTTGGCCGAGCGGTCT 1 chrVII:422933-423337 ( 7) GGTTGTTTGGCCGAGCGGTCT 1 chrII:326667-327009 ( 57) GGTCCAATGGTCCAGTGGTTC 1 chrVIII:466807-467138 ( 68) GCCTCCTTAGCTTAGTGGTAG 1 chrX:355217-355317 ( 48) TCCGTGATAGTTTAATGGTCA 1 chrX:374245-374345 ( 39) TCCGTGATAGTTTAATGGTCA 1 chrX:204554-204654 ( 37) TCCGTGATAGTTTAATGGTCA 1 chrX:541385-541485 ( 19) TCCGTGATAGTTTAATGGTCA 1 chrXIII:463413-463719 ( 38) TCCGTGATAGTTTAATGGTCA 1 chrXV:571803-572127 ( 43) TCCGTGATAGTTTAATGGTCA 1 chrIV:568706-569171 ( 76) TCCGTGATAGTTTAATGGTCA 1 chrXII:426998-427322 ( 22) TCCGTGATAGTTTAATGGTCA 1 chrVII:544475-544840 ( 21) TCCGTGATAGTTTAATGGTCA 1 chrXII:818439-818786 ( 47) GCTCCTCTAGTGCAATGGTTA 1 chrII:36226-36591 ( 40) GCGGATTTAGCTCAGTTGGGA 1 chrXVI:622436-622844 ( 21) GCGGATTTAGCTCAGTTGGGA 1 chrIV:1017087-1017437 ( 46) TCCGATGTAGTGTAACGGCTA 1 chrIV:519689-519865 ( 16) GGAGGGTTGGCCGAGTGGTCT 1 chrIII:82319-82662 ( 73) TCCGATATAGTGTAACGGCTA 1 chrVII:541662-542096 ( 21) TCCGATATAGTGTAACGGCTA 1 chrV:176948-177299 ( 26) TCCGATATAGTGTAACGGCTA 1 chrII:644992-645364 ( 39) TCCGATATAGTGTAACGGCTA 1 chrXII:796986-797359 ( 56) TCCGATATAGTGTAACGGCTA 1 chrV:354739-355152 ( 39) TCCGATATAGTGTAACGGCTA 1 chrIX:370211-370609 ( 57) TCCGATATAGTGTAACGGCTA 1 chrXV:976221-976643 ( 39) GCTTCAGTAGCTCAGTAGGAA 1 chrIV:1175666-1176063 ( 15) GCTTCAGTAGCTCAGTAGGAA 1 chrX:422803-422903 ( 27) GCTTCAGTAGCTCAGTAGGAA 1 chrIV:1075353-1075711 ( 42) GTTCCAATAGTGTAGCGGCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBWBDTRGYBYARTGGKTA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 44320 bayes= 9.26742 E= 1.1e-222 -1333 -1333 202 -47 -1333 148 102 -199 -498 116 28 10 -153 116 16 -29 -18 -22 -13 33 -99 78 16 -3 -8 -430 83 22 -1333 -1333 -1333 170 22 -1333 174 -1333 -1333 -1333 238 -1333 -1333 153 -1333 53 -399 98 83 -23 -299 78 -50 68 170 -1333 -1333 -1333 14 -1333 178 -1333 -1333 -72 -1333 152 -340 -22 174 -90 -1333 -1333 238 -1333 -1333 -60 91 74 -67 -13 -230 94 133 -430 -330 -67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBWBDTRGYBYARTGGKTA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 103 E= 1.1e-222 0.000000 0.000000 0.776699 0.223301 0.000000 0.533981 0.388350 0.077670 0.009709 0.427184 0.233010 0.330097 0.106796 0.427184 0.213592 0.252427 0.271845 0.165049 0.174757 0.388350 0.155340 0.330097 0.213592 0.300971 0.291262 0.009709 0.339806 0.359223 0.000000 0.000000 0.000000 1.000000 0.359223 0.000000 0.640777 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.553398 0.000000 0.446602 0.019417 0.378641 0.339806 0.262136 0.038835 0.330097 0.135922 0.495146 1.000000 0.000000 0.000000 0.000000 0.339806 0.000000 0.660194 0.000000 0.000000 0.116505 0.000000 0.883495 0.029126 0.165049 0.640777 0.165049 0.000000 0.000000 1.000000 0.000000 0.000000 0.126214 0.359223 0.514563 0.194175 0.174757 0.038835 0.592233 0.776699 0.009709 0.019417 0.194175 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBWBDTRGYBYARTGGKTA MEME-1 regular expression -------------------------------------------------------------------------------- [GT][CG][CTG][CTG][TA][CTG][TGA]T[GA]G[CT][CGT][TC]A[GA]TGG[TG]TA -------------------------------------------------------------------------------- Time 298.55 secs. ******************************************************************************** ******************************************************************************** MOTIF DMBSGGRRTCGAACCSVKRAYCYYMYGRT MEME-2 width = 29 sites = 52 llr = 1139 E-value = 6.9e-233 ******************************************************************************** -------------------------------------------------------------------------------- Motif DMBSGGRRTCGAACCSVKRAYCYYMYGRT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 34:12:64:::aa:::3:36:::142:51 pos.-specific C :543:::2:8:::a9631::68355332: probability G 51468a43::a::::33571:1:::2731 matrix T 3:3::::2a2::::11:4:3426413:18 bits 2.4 * * * 2.1 * * * 1.9 * * * 1.7 * ******* Relative 1.4 ** ******* * Entropy 1.2 *** ******** * ** * (31.6 bits) 1.0 **** ******** * ** * 0.7 ****** ******** ** *** * * * 0.5 ******* ***************** * * 0.2 ******* ********************* 0.0 ----------------------------- Multilevel GCGGGGAATCGAACCCCGGACCTCCCGAT consensus AACC GG GGTATT CTATCG sequence T T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMBSGGRRTCGAACCSVKRAYCYYMYGRT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrIV:1017087-1017437 + 2 6.90e-14 A GCGGGGAGTCGAACCCCGGTCTCCACGGT GAGAACGTGA chrIII:82319-82662 + 29 4.19e-13 AAACTCCGAT ACGGGGAGTCGAACCCCGGTCTCCACGGT GAAAGCGTGA chrVII:541662-542096 - 57 4.19e-13 ACACTCCGAT ACGGGGAGTCGAACCCCGGTCTCCACGGT GAAAGCGTGA chrV:176948-177299 - 62 4.19e-13 GTACTCCGAT ACGGGGAGTCGAACCCCGGTCTCCACGGT GAAAGCGTGA chrVII:328433-328896 - 5 4.19e-13 AAACTCCGAT ACGGGGAGTCGAACCCCGGTCTCCACGGT GAAA chrXI:140802-141213 + 68 4.19e-13 AAACTCCGAT ACGGGGAGTCGAACCCCGGTCTCCACGGT GAAA chrXIII:480472-480859 + 13 7.55e-13 AGAAGCCCTG TAGGGGGCTCGAACCCCTAACCTTATGAT TAAGAGTCAT chrXV:282035-282356 - 54 7.55e-13 AAATGCGCAA GCCCGGAATCGAACCGGGGGCCCAACGAT GGCAACGTTG chrIV:1201581-1201988 - 53 7.55e-13 ATTAGCCCTG TAGGGGGCTCGAACCCCTAACCTTATGAT TAAGAGTCAT chrVI:180825-181191 + 23 7.55e-13 GACTGCGCAA GCCCGGAATCGAACCGGGGGCCCAACGAT GGCAACGTTG chrVI:226546-226905 + 20 7.55e-13 ATAAGCCCTG TAGGGGGCTCGAACCCCTAACCTTATGAT TAAGAGTCAT chrXVI:860216-860583 - 65 7.55e-13 TGCGCAA GCCCGGAATCGAACCGGGGGCCCAACGAT GGCAACGTTG chrV:435641-435967 + 5 7.55e-13 CCTG TAGGGGGCTCGAACCCCTAACCTTATGAT TAAGAGTCAT chrX:531667-531767 - 12 7.55e-13 AACTGCGCAA GCCCGGAATCGAACCGGGGGCCCAACGAT GGCAACGTTG chrXVI:572108-572534 - 33 7.55e-13 AATTGCGCAA GCCCGGAATCGAACCGGGGGCCCAACGAT GGCAACGTTG chrVII:122163-122470 - 40 7.55e-13 AATAGCCCTG TAGGGGGCTCGAACCCCTAACCTTATGAT TAAGAGTCAT chrVII:185564-185925 + 27 7.55e-13 GATAGCCCTG TAGGGGGCTCGAACCCCTAACCTTATGAT TAAGAGTCAT chrX:355217-355317 - 2 1.51e-12 AAGCACTCAC GATGGGGGTCGAACCCATAATCTTCTGAT T chrVII:405383-405694 - 18 1.51e-12 AAGCACTCAC GATGGGGGTCGAACCCATAATCTTCTGAT TAGAAGTCAG chrXI:162325-162740 + 12 1.51e-12 AAACACTCAC GATGGGGGTCGAACCCATAATCTTCTGAT TAGAAGTCAG chrII:405691-406122 - 58 1.51e-12 AAGCACTCAC GATGGGGGTCGAACCCATAATCTTCTGAT TAGAAGTCAG chrXIII:131709-132049 + 3 1.51e-12 AC GATGGGGGTCGAACCCATAATCTTCTGAT TAGAAGTCAG chrVII:828501-828989 + 35 1.51e-12 AAGCACTCAC GATGGGGGTCGAACCCATAATCTTCTGAT TAGAAGTCAG chrIV:568706-569171 - 30 1.51e-12 AAGCACTCAC GATGGGGGTCGAACCCATAATCTTCTGAT TAGAAGTCAG chrVII:738956-739328 - 68 2.91e-12 TCTC TAGCGGGATCGAACCGCTGATCCCCGCGT TATTAGCACG chrXII:1052018-1052223 + 8 2.91e-12 TGGTCTC TAGCGGGATCGAACCGCTGATCCCCGCGT TATTAGCACG chrXVI:819317-819794 - 62 2.91e-12 AAATGGTCTC TAGCGGGATCGAACCGCTGATCCCCGCGT TATTAGCACG chrVIII:134199-134507 - 54 3.24e-11 AAAAGGTCCT ACCCGGATTCGAACCGGGGTTGTCCGGAT CAAAACCGAA chrXII:448423-448894 + 49 3.24e-11 AGAAGGTCCT ACCCGGATTCGAACCGGGGTTGTCCGGAT CAAAACCGAA chrI:166164-166458 - 43 4.41e-11 ATTTGGACGC AACCGGAATCGAACCGATGACCTCTTCCT TGCAAGGGAA chrXIV:96115-96466 + 8 8.75e-11 TGAGCGG TACGAGAATCGAACCCGTGTCCCCACCTT GGAAGGGTGG chrVII:779489-779814 - 51 8.75e-11 TCTTGAGCGG TACGAGAATCGAACCCGTGTCCCCACCTT GGAAGGGTGG chrXV:110817-111183 + 19 8.75e-11 ATATGAGCGG TACGAGAATCGAACCCGTGTCCCCACCTT GGAAGGGTGG chrVIII:388615-389205 + 40 1.53e-10 AATGGGGCGA GCTGGGAATTGAACCCAGGGCCTCTCGCA TGCTTTGTCT chrXV:980526-980952 - 63 1.53e-10 AAGGGGCGA GCTGGGAATTGAACCCAGGGCCTCTCGCA TGCTTTGTTC chrXIV:104700-105028 - 28 4.30e-10 ATATGCTTCC AATCGGATTTGAACCGATGATCTCCACAT TACTAGTGTG chrIX:174900-175203 - 67 4.30e-10 CTTCC AATCGGATTTGAACCGATGATCTCCACAT TACTAGTGTG chrXII:374163-374599 - 61 4.67e-10 AATCTTCCCC GCCAGGACTTGAACCTGGAATCTTCTGGT TCGTAGCCAG chrIV:619840-620198 + 7 4.67e-10 TTCCCC GCCAGGACTTGAACCTGGAATCTTCTGGT TCGTAGCCAG chrXV:340153-340503 + 28 4.67e-10 AATCTTCCCC GCCAGGACTTGAACCTGGAATCTTCTGGT TCGTAGCCAG chrIV:1095265-1095583 + 3 1.02e-09 AC TCTGTGGATCGAACACAGGACCTCCAGAT ATCTTGACCA chrXIII:420445-420817 + 14 1.10e-09 AAATGATTTC GCCCAGGATCGAACTGGGGACGTTCTGCG TGTTAAGCAG chrIV:488554-489057 + 49 1.38e-09 TTCTGATCCA ACCGAGGTTCGAACTCGGGATCTTCGCCG TGTAAAGGCG chrII:326667-327009 + 11 1.38e-09 GTTTGATCCA ACCGAGGTTCGAACTCGGGATCTTCGCCG TGTAAAGGCG chrXII:656810-657160 + 6 2.27e-09 GACGA GTCCGGAATCGAACCGGAGACCTCTCCCA TGCTAAGGGA chrVIII:146079-146445 + 37 2.27e-09 GATTGGACGA GTCCGGAATCGAACCGGAGACCTCTCCCA TGCTAAGGGA chrIV:1175666-1176063 - 52 4.15e-09 AAATGCTCCA GGGGAGGTTCGAACTCTCGACCTTCAGAT TATGAGACTG chrX:422803-422903 - 64 4.15e-09 GTGCTCCA GGGGAGGTTCGAACTCTCGACCTTCAGAT TATGAGACTG chrVI:167307-167676 - 49 4.73e-09 ATATCTCCCG GGGGCGAGTCGAACGCCCGATCTCAAGAT TTCGTAGTGG chrV:99954-100346 - 69 1.47e-08 GCC GCTCGGTTTCGATCCGAGGACATCAGGGT TATGAGCCCT chrX:541385-541485 - 55 1.74e-08 AATCTCCGCG ACGGGGAATTGAACCCCGATCTGGCACGC GACAAGCGCC chrXII:426998-427322 - 58 1.74e-08 ATTCTCCGCG ACGGGGAATTGAACCCCGATCTGGCACGC GACAAGCGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMBSGGRRTCGAACCSVKRAYCYYMYGRT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1017087-1017437 6.9e-14 1_[+2]_70 chrIII:82319-82662 4.2e-13 28_[+2]_43 chrVII:541662-542096 4.2e-13 56_[-2]_15 chrV:176948-177299 4.2e-13 61_[-2]_10 chrVII:328433-328896 4.2e-13 4_[-2]_67 chrXI:140802-141213 4.2e-13 67_[+2]_4 chrXIII:480472-480859 7.6e-13 12_[+2]_59 chrXV:282035-282356 7.6e-13 53_[-2]_18 chrIV:1201581-1201988 7.6e-13 52_[-2]_19 chrVI:180825-181191 7.6e-13 22_[+2]_49 chrVI:226546-226905 7.6e-13 19_[+2]_52 chrXVI:860216-860583 7.6e-13 64_[-2]_7 chrV:435641-435967 7.6e-13 4_[+2]_67 chrX:531667-531767 7.6e-13 11_[-2]_60 chrXVI:572108-572534 7.6e-13 32_[-2]_39 chrVII:122163-122470 7.6e-13 39_[-2]_32 chrVII:185564-185925 7.6e-13 26_[+2]_45 chrX:355217-355317 1.5e-12 1_[-2]_70 chrVII:405383-405694 1.5e-12 17_[-2]_54 chrXI:162325-162740 1.5e-12 11_[+2]_60 chrII:405691-406122 1.5e-12 57_[-2]_14 chrXIII:131709-132049 1.5e-12 2_[+2]_69 chrVII:828501-828989 1.5e-12 34_[+2]_37 chrIV:568706-569171 1.5e-12 29_[-2]_42 chrVII:738956-739328 2.9e-12 67_[-2]_4 chrXII:1052018-1052223 2.9e-12 7_[+2]_64 chrXVI:819317-819794 2.9e-12 61_[-2]_10 chrVIII:134199-134507 3.2e-11 53_[-2]_18 chrXII:448423-448894 3.2e-11 48_[+2]_23 chrI:166164-166458 4.4e-11 42_[-2]_29 chrXIV:96115-96466 8.8e-11 7_[+2]_64 chrVII:779489-779814 8.8e-11 50_[-2]_21 chrXV:110817-111183 8.8e-11 18_[+2]_53 chrVIII:388615-389205 1.5e-10 39_[+2]_32 chrXV:980526-980952 1.5e-10 62_[-2]_9 chrXIV:104700-105028 4.3e-10 27_[-2]_44 chrIX:174900-175203 4.3e-10 66_[-2]_5 chrXII:374163-374599 4.7e-10 60_[-2]_11 chrIV:619840-620198 4.7e-10 6_[+2]_65 chrXV:340153-340503 4.7e-10 27_[+2]_44 chrIV:1095265-1095583 1e-09 2_[+2]_69 chrXIII:420445-420817 1.1e-09 13_[+2]_58 chrIV:488554-489057 1.4e-09 48_[+2]_23 chrII:326667-327009 1.4e-09 10_[+2]_61 chrXII:656810-657160 2.3e-09 5_[+2]_66 chrVIII:146079-146445 2.3e-09 36_[+2]_35 chrIV:1175666-1176063 4.2e-09 51_[-2]_20 chrX:422803-422903 4.2e-09 63_[-2]_8 chrVI:167307-167676 4.7e-09 48_[-2]_23 chrV:99954-100346 1.5e-08 68_[-2]_3 chrX:541385-541485 1.7e-08 54_[-2]_17 chrXII:426998-427322 1.7e-08 57_[-2]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMBSGGRRTCGAACCSVKRAYCYYMYGRT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DMBSGGRRTCGAACCSVKRAYCYYMYGRT width=29 seqs=52 chrIV:1017087-1017437 ( 2) GCGGGGAGTCGAACCCCGGTCTCCACGGT 1 chrIII:82319-82662 ( 29) ACGGGGAGTCGAACCCCGGTCTCCACGGT 1 chrVII:541662-542096 ( 57) ACGGGGAGTCGAACCCCGGTCTCCACGGT 1 chrV:176948-177299 ( 62) ACGGGGAGTCGAACCCCGGTCTCCACGGT 1 chrVII:328433-328896 ( 5) ACGGGGAGTCGAACCCCGGTCTCCACGGT 1 chrXI:140802-141213 ( 68) ACGGGGAGTCGAACCCCGGTCTCCACGGT 1 chrXIII:480472-480859 ( 13) TAGGGGGCTCGAACCCCTAACCTTATGAT 1 chrXV:282035-282356 ( 54) GCCCGGAATCGAACCGGGGGCCCAACGAT 1 chrIV:1201581-1201988 ( 53) TAGGGGGCTCGAACCCCTAACCTTATGAT 1 chrVI:180825-181191 ( 23) GCCCGGAATCGAACCGGGGGCCCAACGAT 1 chrVI:226546-226905 ( 20) TAGGGGGCTCGAACCCCTAACCTTATGAT 1 chrXVI:860216-860583 ( 65) GCCCGGAATCGAACCGGGGGCCCAACGAT 1 chrV:435641-435967 ( 5) TAGGGGGCTCGAACCCCTAACCTTATGAT 1 chrX:531667-531767 ( 12) GCCCGGAATCGAACCGGGGGCCCAACGAT 1 chrXVI:572108-572534 ( 33) GCCCGGAATCGAACCGGGGGCCCAACGAT 1 chrVII:122163-122470 ( 40) TAGGGGGCTCGAACCCCTAACCTTATGAT 1 chrVII:185564-185925 ( 27) TAGGGGGCTCGAACCCCTAACCTTATGAT 1 chrX:355217-355317 ( 2) GATGGGGGTCGAACCCATAATCTTCTGAT 1 chrVII:405383-405694 ( 18) GATGGGGGTCGAACCCATAATCTTCTGAT 1 chrXI:162325-162740 ( 12) GATGGGGGTCGAACCCATAATCTTCTGAT 1 chrII:405691-406122 ( 58) GATGGGGGTCGAACCCATAATCTTCTGAT 1 chrXIII:131709-132049 ( 3) GATGGGGGTCGAACCCATAATCTTCTGAT 1 chrVII:828501-828989 ( 35) GATGGGGGTCGAACCCATAATCTTCTGAT 1 chrIV:568706-569171 ( 30) GATGGGGGTCGAACCCATAATCTTCTGAT 1 chrVII:738956-739328 ( 68) TAGCGGGATCGAACCGCTGATCCCCGCGT 1 chrXII:1052018-1052223 ( 8) TAGCGGGATCGAACCGCTGATCCCCGCGT 1 chrXVI:819317-819794 ( 62) TAGCGGGATCGAACCGCTGATCCCCGCGT 1 chrVIII:134199-134507 ( 54) ACCCGGATTCGAACCGGGGTTGTCCGGAT 1 chrXII:448423-448894 ( 49) ACCCGGATTCGAACCGGGGTTGTCCGGAT 1 chrI:166164-166458 ( 43) AACCGGAATCGAACCGATGACCTCTTCCT 1 chrXIV:96115-96466 ( 8) TACGAGAATCGAACCCGTGTCCCCACCTT 1 chrVII:779489-779814 ( 51) TACGAGAATCGAACCCGTGTCCCCACCTT 1 chrXV:110817-111183 ( 19) TACGAGAATCGAACCCGTGTCCCCACCTT 1 chrVIII:388615-389205 ( 40) GCTGGGAATTGAACCCAGGGCCTCTCGCA 1 chrXV:980526-980952 ( 63) GCTGGGAATTGAACCCAGGGCCTCTCGCA 1 chrXIV:104700-105028 ( 28) AATCGGATTTGAACCGATGATCTCCACAT 1 chrIX:174900-175203 ( 67) AATCGGATTTGAACCGATGATCTCCACAT 1 chrXII:374163-374599 ( 61) GCCAGGACTTGAACCTGGAATCTTCTGGT 1 chrIV:619840-620198 ( 7) GCCAGGACTTGAACCTGGAATCTTCTGGT 1 chrXV:340153-340503 ( 28) GCCAGGACTTGAACCTGGAATCTTCTGGT 1 chrIV:1095265-1095583 ( 3) TCTGTGGATCGAACACAGGACCTCCAGAT 1 chrXIII:420445-420817 ( 14) GCCCAGGATCGAACTGGGGACGTTCTGCG 1 chrIV:488554-489057 ( 49) ACCGAGGTTCGAACTCGGGATCTTCGCCG 1 chrII:326667-327009 ( 11) ACCGAGGTTCGAACTCGGGATCTTCGCCG 1 chrXII:656810-657160 ( 6) GTCCGGAATCGAACCGGAGACCTCTCCCA 1 chrVIII:146079-146445 ( 37) GTCCGGAATCGAACCGGAGACCTCTCCCA 1 chrIV:1175666-1176063 ( 52) GGGGAGGTTCGAACTCTCGACCTTCAGAT 1 chrX:422803-422903 ( 64) GGGGAGGTTCGAACTCTCGACCTTCAGAT 1 chrVI:167307-167676 ( 49) GGGGCGAGTCGAACGCCCGATCTCAAGAT 1 chrV:99954-100346 ( 69) GCTCGGTTTCGATCCGAGGACATCAGGGT 1 chrX:541385-541485 ( 55) ACGGGGAATTGAACCCCGATCTGGCACGC 1 chrXII:426998-427322 ( 58) ACGGGGAATTGAACCCCGATCTGGCACGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMBSGGRRTCGAACCSVKRAYCYYMYGRT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 39888 bayes= 8.46196 E= 6.9e-233 -20 -1234 133 -30 46 133 -173 -300 -1234 93 100 -30 -242 77 168 -1234 -100 -331 207 -400 -1234 -1234 238 -1234 86 -1234 114 -400 32 -15 49 -83 -1234 -1234 -1234 170 -1234 211 -1234 -83 -1234 -1234 238 -1234 170 -1234 -1234 -1234 167 -1234 -1234 -400 -1234 238 -1234 -1234 -400 217 -331 -168 -1234 168 77 -242 -20 85 85 -300 -300 -173 133 46 17 -1234 177 -1234 100 -1234 -51 -30 -1234 168 -1234 32 -400 200 -173 -100 -1234 77 -232 104 -168 127 -232 39 46 133 -1234 -168 -100 85 -32 17 -1234 59 189 -1234 70 -32 59 -242 -200 -232 -173 142 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMBSGGRRTCGAACCSVKRAYCYYMYGRT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 52 E= 6.9e-233 0.269231 0.000000 0.480769 0.250000 0.423077 0.480769 0.057692 0.038462 0.000000 0.365385 0.384615 0.250000 0.057692 0.326923 0.615385 0.000000 0.153846 0.019231 0.807692 0.019231 0.000000 0.000000 1.000000 0.000000 0.557692 0.000000 0.423077 0.019231 0.384615 0.173077 0.269231 0.173077 0.000000 0.000000 0.000000 1.000000 0.000000 0.826923 0.000000 0.173077 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.980769 0.000000 0.000000 0.019231 0.000000 1.000000 0.000000 0.000000 0.019231 0.865385 0.019231 0.096154 0.000000 0.615385 0.326923 0.057692 0.269231 0.346154 0.346154 0.038462 0.038462 0.057692 0.480769 0.423077 0.346154 0.000000 0.653846 0.000000 0.615385 0.000000 0.134615 0.250000 0.000000 0.615385 0.000000 0.384615 0.019231 0.769231 0.057692 0.153846 0.000000 0.326923 0.038462 0.634615 0.096154 0.461538 0.038462 0.403846 0.423077 0.480769 0.000000 0.096154 0.153846 0.346154 0.153846 0.346154 0.000000 0.288462 0.711538 0.000000 0.500000 0.153846 0.288462 0.057692 0.076923 0.038462 0.057692 0.826923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMBSGGRRTCGAACCSVKRAYCYYMYGRT MEME-2 regular expression -------------------------------------------------------------------------------- [GAT][CA][GCT][GC]GG[AG][AG]TCGAACC[CG][CGA][GT][GA][AT][CT]C[TC][CT][CA][CT][GC][AG]T -------------------------------------------------------------------------------- Time 563.68 secs. ******************************************************************************** ******************************************************************************** MOTIF GAKTMGAAAKCTYTTSSRCTKWGCCMSCGC MEME-3 width = 30 sites = 13 llr = 382 E-value = 6.9e-056 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAKTMGAAAKCTYTTSSRCTKWGCCMSCGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :9::4:888:::::3::5:::3:::5:::: pos.-specific C ::12521:2:a:5::55:7:22:aa558:a probability G a:5:18:2:5:21::555::5:a:::52a: matrix T :1581:21:5:84a7:::3a45:::::::: bits 2.4 * * *** ** 2.1 * * *** ** 1.9 * * *** ** 1.7 * * * * * *** *** Relative 1.4 * * * * ** * *** **** Entropy 1.2 ** * * * ** * ** ** *** **** (42.4 bits) 1.0 ** * * **** * ***** ******** 0.7 **** **************** ******** 0.5 ****************************** 0.2 ****************************** 0.0 ------------------------------ Multilevel GAGTCGAAATCTCTTGGGCTGTGCCCGCGC consensus TCA G T ACCAT TA AC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAKTMGAAAKCTYTTSSRCTKWGCCMSCGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXIII:259054-259404 - 2 4.30e-16 TAAGGCGAAA GATTAGAAATCTTTTGGGCTTTGCCCGCGC A chrXII:167844-168187 - 2 4.30e-16 TAAGGCGAAA GATTAGAAATCTTTTGGGCTTTGCCCGCGC A chrI:182441-182669 - 40 4.30e-16 TAAGGCGAAA GATTAGAAATCTTTTGGGCTTTGCCCGCGC AGGTTCGAGT chrII:226942-227278 + 44 4.30e-16 TAAGGCGAAA GATTAGAAATCTTTTGGGCTTTGCCCGCGC AGGTTCGAGT chrIV:437624-437956 + 61 4.30e-16 TAAGGCGAAA GATTAGAAATCTTTTGGGCTTTGCCCGCGC AGGTTCGAGT chrX:415854-415954 + 27 7.38e-15 GATTTAATTG GAGTCGAAAGCTCTACCATTGAGCCACCGC TTCAACTTTT chrXVI:56038-56432 + 57 7.38e-15 GATTTAATTG GAGTCGAAAGCTCTACCATTGAGCCACCGC TTCAACTATT chrXIII:379233-379580 + 20 7.38e-15 GATTTAATTG GAGTCGAAAGCTCTACCATTGAGCCACCGC TTCAACTTTT chrVII:287249-287642 + 28 7.38e-15 GATTTAATTG GAGTCGAAAGCTCTACCATTGAGCCACCGC TTCATCTTGA chrXVI:689394-689792 + 51 1.31e-13 TAAGGCGACA GACTTGAAATCTGTTGGGCTCTGCCCGCGC TGGTTCAAAT chrIII:227779-228162 + 70 1.18e-12 GGAATAAAAA GTTCGGCTATCTCTTGGGCTCTGCCCGCGC T chrIII:149783-150079 - 42 1.81e-12 TCAGGGTTAT GAGCCCTGCGCGCTTCCACTGCGCCACGGC GCTCAACATT chrV:99954-100346 - 36 1.81e-12 TCAGGGTTAT GAGCCCTGCGCGCTTCCACTGCGCCACGGC GCTTAGCCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAKTMGAAAKCTYTTSSRCTKWGCCMSCGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:259054-259404 4.3e-16 1_[-3]_69 chrXII:167844-168187 4.3e-16 1_[-3]_69 chrI:182441-182669 4.3e-16 39_[-3]_31 chrII:226942-227278 4.3e-16 43_[+3]_27 chrIV:437624-437956 4.3e-16 60_[+3]_10 chrX:415854-415954 7.4e-15 26_[+3]_44 chrXVI:56038-56432 7.4e-15 56_[+3]_14 chrXIII:379233-379580 7.4e-15 19_[+3]_51 chrVII:287249-287642 7.4e-15 27_[+3]_43 chrXVI:689394-689792 1.3e-13 50_[+3]_20 chrIII:227779-228162 1.2e-12 69_[+3]_1 chrIII:149783-150079 1.8e-12 41_[-3]_29 chrV:99954-100346 1.8e-12 35_[-3]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAKTMGAAAKCTYTTSSRCTKWGCCMSCGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAKTMGAAAKCTYTTSSRCTKWGCCMSCGC width=30 seqs=13 chrXIII:259054-259404 ( 2) GATTAGAAATCTTTTGGGCTTTGCCCGCGC 1 chrXII:167844-168187 ( 2) GATTAGAAATCTTTTGGGCTTTGCCCGCGC 1 chrI:182441-182669 ( 40) GATTAGAAATCTTTTGGGCTTTGCCCGCGC 1 chrII:226942-227278 ( 44) GATTAGAAATCTTTTGGGCTTTGCCCGCGC 1 chrIV:437624-437956 ( 61) GATTAGAAATCTTTTGGGCTTTGCCCGCGC 1 chrX:415854-415954 ( 27) GAGTCGAAAGCTCTACCATTGAGCCACCGC 1 chrXVI:56038-56432 ( 57) GAGTCGAAAGCTCTACCATTGAGCCACCGC 1 chrXIII:379233-379580 ( 20) GAGTCGAAAGCTCTACCATTGAGCCACCGC 1 chrVII:287249-287642 ( 28) GAGTCGAAAGCTCTACCATTGAGCCACCGC 1 chrXVI:689394-689792 ( 51) GACTTGAAATCTGTTGGGCTCTGCCCGCGC 1 chrIII:227779-228162 ( 70) GTTCGGCTATCTCTTGGGCTCTGCCCGCGC 1 chrIII:149783-150079 ( 42) GAGCCCTGCGCGCTTCCACTGCGCCACGGC 1 chrV:99954-100346 ( 36) GAGCCCTGCGCGCTTCCACTGCGCCACGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAKTMGAAAKCTYTTSSRCTKWGCCMSCGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 39334 bayes= 10.4448 E= 6.9e-056 -1035 -1035 238 -1035 158 -1035 -1035 -200 -1035 -132 127 58 -1035 27 -1035 132 32 127 -132 -200 -1035 -32 214 -1035 132 -132 -1035 -100 132 -1035 -32 -200 146 -32 -1035 -1035 -1035 -1035 127 80 -1035 238 -1035 -1035 -1035 -1035 -32 146 -1035 149 -132 32 -1035 -1035 -1035 170 0 -1035 -1035 117 -1035 127 149 -1035 -1035 127 149 -1035 58 -1035 149 -1035 -1035 185 -1035 0 -1035 -1035 -1035 170 -1035 -32 127 32 0 -32 -1035 80 -1035 -1035 238 -1035 -1035 238 -1035 -1035 -1035 238 -1035 -1035 58 149 -1035 -1035 -1035 127 149 -1035 -1035 214 -32 -1035 -1035 -1035 238 -1035 -1035 238 -1035 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAKTMGAAAKCTYTTSSRCTKWGCCMSCGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 13 E= 6.9e-056 0.000000 0.000000 1.000000 0.000000 0.923077 0.000000 0.000000 0.076923 0.000000 0.076923 0.461538 0.461538 0.000000 0.230769 0.000000 0.769231 0.384615 0.461538 0.076923 0.076923 0.000000 0.153846 0.846154 0.000000 0.769231 0.076923 0.000000 0.153846 0.769231 0.000000 0.153846 0.076923 0.846154 0.153846 0.000000 0.000000 0.000000 0.000000 0.461538 0.538462 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.153846 0.846154 0.000000 0.538462 0.076923 0.384615 0.000000 0.000000 0.000000 1.000000 0.307692 0.000000 0.000000 0.692308 0.000000 0.461538 0.538462 0.000000 0.000000 0.461538 0.538462 0.000000 0.461538 0.000000 0.538462 0.000000 0.000000 0.692308 0.000000 0.307692 0.000000 0.000000 0.000000 1.000000 0.000000 0.153846 0.461538 0.384615 0.307692 0.153846 0.000000 0.538462 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.461538 0.538462 0.000000 0.000000 0.000000 0.461538 0.538462 0.000000 0.000000 0.846154 0.153846 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAKTMGAAAKCTYTTSSRCTKWGCCMSCGC MEME-3 regular expression -------------------------------------------------------------------------------- GA[GT][TC][CA]GAAA[TG]CT[CT]T[TA][GC][GC][GA][CT]T[GT][TA]GCC[CA][GC]CGC -------------------------------------------------------------------------------- Time 827.50 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:227725-227825 8.77e-01 100 chrX:223937-224037 3.96e-01 100 chrV:163215-163805 2.55e-01 100 chrXV:110817-111183 3.59e-13 18_[+2(8.75e-11)]_15_[-1(1.12e-08)]_\ 17 chrXVI:75670-75989 6.97e-01 100 chrI:141544-142008 5.94e-01 100 chrIV:437624-437956 5.26e-17 31_[+1(6.73e-09)]_8_[+3(4.30e-16)]_\ 10 chrXII:806397-806952 3.96e-01 100 chrXII:837685-839092 3.19e-01 100 chrXIV:569798-570101 8.57e-05 20_[-1(2.11e-08)]_59 chrIV:914030-914539 9.53e-01 100 chrVIII:34373-35418 6.42e-01 100 chrXVI:819317-819794 3.40e-13 23_[+1(2.11e-08)]_17_[-2(2.91e-12)]_\ 10 chrXIII:362910-363270 1.05e-05 23_[+1(6.08e-07)]_15_[-2(1.00e-05)]_\ 12 chrXV:159208-160186 5.38e-01 100 chrV:250297-250480 9.68e-01 100 chrXVI:701790-702239 9.12e-01 100 chrVIII:148117-148707 9.28e-01 100 chrXIV:585678-586514 8.26e-01 100 chrXVI:303495-303991 8.43e-01 100 chrXV:353935-354274 8.63e-04 38_[-1(6.08e-07)]_41 chrV:77510-77907 9.68e-01 100 chrXI:355801-356482 9.37e-01 100 chrXV:896565-897155 9.66e-01 100 chrXII:65356-65819 1.86e-01 100 chrX:382813-382913 9.34e-01 100 chrII:592116-592706 5.21e-01 100 chrVIII:17075-17367 7.46e-01 100 chrXIII:789087-789677 8.93e-01 100 chrVII:366126-366648 9.13e-01 100 chrVII:185564-185925 3.58e-14 26_[+2(7.55e-13)]_16_[-1(1.55e-08)]_\ 8 chrXI:104027-104617 6.23e-01 100 chrXVI:622436-622844 6.77e-03 20_[-1(1.09e-06)]_59 chrXV:671002-671478 4.76e-01 100 chrXII:242743-243333 9.17e-01 100 chrXIII:914948-915359 6.37e-01 100 chrXII:898280-898870 3.27e-01 100 chrVII:544475-544840 5.37e-03 20_[-1(8.54e-07)]_59 chrI:66176-66766 3.47e-01 100 chrXI:258651-258963 2.09e-03 30_[-3(5.92e-06)]_40 chrIV:519689-519865 4.13e-05 15_[+1(1.95e-06)]_64 chrX:652239-652339 4.91e-02 21_[+1(8.62e-05)]_58 chrVII:479179-480139 7.57e-01 100 chrVII:559286-559876 5.52e-01 100 chrXII:47934-48150 1.45e-01 100 chrXIV:108652-109242 1.36e-02 69_[+3(3.58e-05)]_1 chrXIV:493539-494129 9.88e-01 100 chrII:226942-227278 5.98e-18 14_[+1(6.73e-09)]_8_[+3(4.30e-16)]_\ 27 chrXI:104237-104827 5.84e-01 100 chrIV:362780-363370 4.25e-02 15_[-1(5.60e-05)]_64 chrXVI:689394-689792 2.07e-14 21_[+1(2.44e-08)]_8_[+3(1.31e-13)]_\ 20 chrXII:845024-845614 1.33e-01 100 chrXIV:417701-418291 2.54e-01 100 chrII:9487-9781 1.21e-03 55_[+2(3.33e-05)]_16 chrXV:259326-259916 6.38e-01 100 chrIX:255411-255816 4.31e-01 100 chrXII:232017-234285 4.08e-01 100 chrVIII:451157-452999 1.35e-01 100 chrXII:426998-427322 2.82e-08 21_[+1(8.54e-07)]_15_[-2(1.74e-08)]_\ 14 chrXIV:63512-64102 4.30e-01 100 chrV:378145-378735 6.56e-02 100 chrXV:444736-446167 1.54e-01 100 chrVII:807158-807422 3.40e-01 100 chrXVI:435794-436139 5.64e-07 27_[-1(2.32e-07)]_52 chrVI:210507-210870 1.78e-01 100 chrVII:122163-122470 3.58e-14 2_[+1(1.55e-08)]_16_[-2(7.55e-13)]_\ 32 chrV:265051-265641 2.55e-01 100 chrV:165760-166350 7.43e-01 100 chrXI:558873-559463 4.94e-02 2_[-1(2.71e-05)]_77 chrXIV:62071-62661 7.53e-01 100 chrIV:1345367-1345610 6.64e-01 100 chrXI:379586-380176 7.87e-01 100 chrVIII:531520-531749 8.91e-01 100 chrVIII:127197-127787 5.13e-01 100 chrXII:448423-448894 3.74e-07 48_[+2(3.24e-11)]_23 chrVIII:381449-382113 9.94e-03 49_[-3(1.05e-05)]_21 chrXIII:253361-253607 5.35e-01 100 chrXIV:301623-302179 7.11e-01 100 chrVII:986732-987259 3.24e-01 100 chrIV:768486-769076 4.72e-01 100 chrXII:201672-202521 1.22e-02 43_[+2(1.85e-05)]_28 chrII:168497-169087 1.74e-01 10_[-1(7.17e-05)]_69 chrV:117797-118208 2.84e-03 56_[+3(4.50e-05)]_14 chrV:151957-152141 1.00e+00 100 chrIV:443531-444121 1.24e-01 100 chrXII:721680-722270 9.85e-01 100 chrXIII:671729-672319 4.29e-02 38_[+2(7.06e-05)]_33 chrXVI:352323-352568 7.98e-01 100 chrXII:793711-795317 3.09e-02 30_[+1(6.92e-05)]_49 chrVII:481354-483031 2.41e-01 100 chrIV:222802-223392 7.04e-01 100 chrVIII:35347-36040 3.26e-01 100 chrIV:837002-837592 2.11e-01 100 chrIX:174900-175203 1.43e-09 29_[+1(6.08e-07)]_16_[-2(4.30e-10)]_\ 5 chrXII:720800-721390 3.02e-01 100 chrII:414104-414294 9.84e-01 100 chrXVI:643199-643632 9.56e-01 100 chrVII:148105-148429 1.02e-01 100 chrXV:340153-340503 1.48e-10 27_[+2(4.67e-10)]_16_[-1(1.19e-07)]_\ 7 chrXV:1004107-1004697 7.29e-01 100 chrIV:443798-444388 9.98e-01 100 chrXIII:388175-388765 4.48e-03 8_[-2(1.70e-05)]_63 chrXIII:552339-552929 2.90e-01 100 chrXV:759033-759590 7.19e-01 100 chrIX:129887-130109 3.90e-01 100 chrIV:541233-541845 5.03e-01 100 chrXIV:576874-577464 1.00e+00 100 chrIV:721806-722044 6.00e-02 100 chrVII:422933-423337 2.77e-03 6_[+1(7.23e-07)]_73 chrIV:884206-884635 4.80e-01 100 chrXVI:718389-719251 8.80e-01 100 chrIX:370211-370609 4.51e-03 56_[+1(2.38e-06)]_23 chrII:680834-680993 7.76e-02 100 chrVII:94178-94768 8.91e-01 100 chrIV:568706-569171 2.44e-12 29_[-2(1.51e-12)]_17_[+1(8.54e-07)]_\ 4 chrXIII:420445-420817 4.79e-11 13_[+2(1.10e-09)]_17_[-1(7.31e-08)]_\ 20 chrII:167022-167612 9.82e-01 100 chrII:255115-255529 3.64e-01 100 chrXIV:253294-253884 5.19e-01 100 chrXI:326130-327414 1.98e-02 100 chrVII:287249-287642 2.28e-12 27_[+3(7.38e-15)]_43 chrXIII:586544-586861 2.39e-05 36_[-1(7.31e-08)]_43 chrXV:571803-572127 7.57e-04 42_[+1(8.54e-07)]_37 chrVIII:75955-76219 3.98e-01 100 chrXI:284405-284759 3.57e-01 100 chrV:491013-491458 2.88e-03 51_[+2(2.53e-05)]_20 chrXIV:230212-230463 2.77e-01 100 chrVII:310889-312260 3.46e-01 100 chrXIII:499153-499697 5.84e-01 100 chrV:354739-355152 5.62e-03 38_[+1(2.38e-06)]_41 chrVI:82764-83129 8.21e-01 100 chrXVI:114358-114816 2.49e-01 100 chrVII:1057322-1057912 8.66e-01 100 chrXV:506635-506921 1.00e+00 100 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chrVI:93817-94407 1.15e-01 100 chrXV:976221-976643 6.72e-04 38_[+1(2.70e-06)]_41 chrX:204554-204654 7.06e-04 36_[+1(8.54e-07)]_43 chrXV:725134-725724 9.84e-01 100 chrIX:388624-389071 7.98e-01 100 chrIII:149783-150079 1.04e-09 41_[-3(1.81e-12)]_29 chrVII:738956-739328 3.40e-13 29_[+1(2.11e-08)]_17_[-2(2.91e-12)]_\ 4 chrIX:322768-323358 7.44e-01 100 chrVII:599697-599929 8.73e-01 100 chrVI:75258-75848 2.22e-01 100 chrXI:283056-283425 5.96e-02 100 chrXIII:306071-306907 8.70e-01 100 chrII:256227-256962 4.39e-01 100 chrV:143336-143926 7.45e-01 100 chrVIII:388615-389205 3.98e-07 39_[+2(1.53e-10)]_32 chrI:166164-166458 9.17e-14 5_[+1(5.63e-09)]_16_[-2(4.41e-11)]_\ 29 chrXII:818439-818786 2.40e-03 46_[+1(1.00e-06)]_33 chrIII:82319-82662 7.10e-12 28_[+2(4.19e-13)]_15_[-1(2.38e-06)]_\ 7 chrVII:876241-876566 1.49e-05 40_[+1(1.55e-08)]_39 chrX:396649-396749 3.69e-04 20_[-1(3.27e-08)]_59 chrXIII:887125-887715 3.65e-02 100 chrXV:977959-978304 7.94e-01 100 chrXV:254629-254790 9.06e-01 100 chrIV:601366-601956 3.68e-01 100 chrIV:579516-580589 6.18e-01 100 chrIV:384290-384880 7.57e-01 100 chrV:42186-42406 2.79e-01 100 chrXI:67973-68563 3.27e-02 100 chrXIII:267937-268283 2.51e-01 100 chrXII:459911-460501 2.02e-01 100 chrV:443109-443421 1.26e-04 39_[-1(2.11e-08)]_40 chrXIII:756551-757141 8.93e-01 100 chrIV:76687-77277 5.99e-01 100 chrII:87995-88604 9.77e-01 100 chrXI:46623-46974 5.48e-06 37_[-1(2.44e-08)]_42 chrVIII:126686-126842 9.93e-01 100 chrV:511499-512089 1.47e-01 100 chrX:526310-526410 6.56e-01 100 chrXV:28718-29308 6.08e-01 100 chrIV:356305-356895 8.77e-01 100 chrIV:355614-355918 7.46e-01 100 chrV:434440-434787 1.55e-04 28_[-1(6.08e-07)]_51 chrVII:930871-931208 9.21e-05 13_[-1(3.27e-08)]_66 chrXIV:283061-283651 5.87e-01 100 chrV:241951-242347 5.45e-01 100 chrXII:809852-810442 9.23e-01 100 chrIV:488554-489057 1.54e-05 48_[+2(1.38e-09)]_23 chrXI:384068-384658 9.28e-01 100 chrIII:230373-230963 5.19e-01 100 chrXIII:892741-893331 2.29e-01 100 chrIV:217798-217994 8.53e-01 100 chrXIII:163755-163989 1.40e-01 100 chrV:131001-131301 1.10e-04 31_[-1(5.65e-08)]_48 chrV:431036-431530 1.21e-01 100 chrIV:915530-915815 1.80e-01 100 chrVI:180825-181191 1.68e-14 22_[+2(7.55e-13)]_14_[-1(3.27e-08)]_\ 14 chrXIV:567975-568289 5.82e-05 32_[+1(3.76e-08)]_47 chrXVI:74965-75314 3.04e-02 100 chrXII:366105-366423 1.32e-02 100 chrIV:129934-130457 7.24e-01 100 chrX:374245-374345 8.55e-04 38_[-1(8.54e-07)]_41 chrIV:1201581-1201988 3.58e-14 15_[+1(1.55e-08)]_16_[-2(7.55e-13)]_\ 19 chrXII:953067-953452 9.50e-01 100 chrXVI:75229-75819 4.84e-01 100 chrX:355217-355317 1.23e-11 1_[-2(1.51e-12)]_17_[+1(8.54e-07)]_\ 32 chrVII:600673-601263 2.93e-01 100 chrV:122509-122671 4.83e-01 100 chrXII:254416-255006 4.61e-02 100 chrXV:908664-908833 2.25e-02 100 chrXI:552293-552441 9.93e-01 100 chrVII:323685-324130 7.85e-01 100 chrXVI:822737-823327 1.06e-01 70_[+3(7.79e-05)] chrXII:673312-673902 9.87e-01 100 chrXII:784184-784567 9.24e-06 28_[+1(3.27e-08)]_51 chrVI:31883-32298 2.59e-01 100 chrXV:282035-282356 1.68e-14 18_[+1(3.27e-08)]_14_[-2(7.55e-13)]_\ 18 chrVIII:466807-467138 7.65e-06 67_[+1(8.54e-07)]_12 chrXIV:374732-375061 6.75e-04 22_[+1(7.23e-07)]_57 chrXIII:626251-626905 7.59e-01 100 chrIII:107195-107678 8.70e-01 100 chrIV:1302066-1302264 9.76e-01 100 chrXI:231297-231668 2.43e-03 5_[+3(1.34e-05)]_65 chrV:237469-238059 4.41e-01 100 chrXV:905297-905887 9.56e-01 100 chrXVI:577202-577792 9.85e-01 100 chrXIII:162107-162339 8.67e-01 100 chrIV:118409-118732 4.46e-01 100 chrXIII:159421-159610 4.63e-01 100 chrXV:216362-216581 7.84e-02 100 chrXIV:96115-96466 3.59e-13 7_[+2(8.75e-11)]_15_[-1(1.12e-08)]_\ 3_[+1(1.08e-05)]_4 chrXIII:480472-480859 3.58e-14 12_[+2(7.55e-13)]_16_[-1(1.55e-08)]_\ 22 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************