Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.047321 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.072928 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.108252 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.019695 Invoking: fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/seqs-sampled Finished invoke: name: sample_seqs status: 0 time: 0.076088 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background Finished invoke: name: bg status: 0 time: 0.039536 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 538.00814 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/seqs-shuffled Finished invoke: name: dreme status: 0 time: 212.151148 Invoking: centrimo -seqlen 804 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.171547 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.473591 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background -primary TACCR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 1.973382 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background -primary WARAARARSAAGAAR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 1.681724 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background -primary AHTGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 2.003582 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background -primary CGAYG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 1.940185 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background -primary TGBTCAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 1.418311 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background -primary CTCTARC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.744305 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background -primary CRGCACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.726819 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background -primary GTAAGCAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.280987 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background -primary CTKTGAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.785315 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background -primary CCAAAGM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 1.317467 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background -primary ACSATCTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo11 status: 0 time: 0.388628 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background -primary AGCAKCAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo12 status: 0 time: 0.58911 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background -primary CASCAGCASCV /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo13 status: 0 time: 1.489042 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background -primary AGKAGATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo14 status: 0 time: 0.320237 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background -primary GSTAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo15 status: 0 time: 1.034228 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/spamo_out_16 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background -primary AACATSTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo16 status: 0 time: 0.420852 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/spamo_out_17 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background -primary ACCAAGCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo17 status: 0 time: 0.582108 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/spamo_out_18 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background -primary TAGAAAKA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo18 status: 0 time: 0.582129 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/spamo_out_19 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background -primary GAACTYTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo19 status: 0 time: 0.361718 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/spamo_out_20 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background -primary TGNBKGRATTGAHGRTMBMARAGYTGGYS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo20 status: 0 time: 0.380411 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/spamo_out_21 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background -primary CGTTCTCY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo21 status: 0 time: 0.309651 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/spamo_out_22 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background -primary GCCATRAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo22 status: 0 time: 0.280561 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/spamo_out_23 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background -primary RGAATCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo23 status: 0 time: 0.490955 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/spamo_out_24 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background -primary AGYACTTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo24 status: 0 time: 0.407012 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background --motif TACCR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa Finished invoke: name: fimo1 status: 0 time: 1.130832 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background --motif WARAARARSAAGAAR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa Finished invoke: name: fimo2 status: 0 time: 1.335058 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background --motif AHTGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa Finished invoke: name: fimo3 status: 0 time: 1.135816 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background --motif CGAYG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa Finished invoke: name: fimo4 status: 0 time: 1.133625 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background --motif TGBTCAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa Finished invoke: name: fimo5 status: 0 time: 1.147861 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background --motif CTCTARC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa Finished invoke: name: fimo6 status: 0 time: 1.145342 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background --motif CRGCACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa Finished invoke: name: fimo7 status: 0 time: 1.146182 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background --motif GTAAGCAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa Finished invoke: name: fimo8 status: 0 time: 1.17716 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background --motif CTKTGAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa Finished invoke: name: fimo9 status: 0 time: 1.132081 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background --motif CCAAAGM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa Finished invoke: name: fimo10 status: 0 time: 1.137568 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background --motif ACSATCTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa Finished invoke: name: fimo11 status: 0 time: 1.167047 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background --motif AGCAKCAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa Finished invoke: name: fimo12 status: 0 time: 1.18784 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background --motif CASCAGCASCV /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa Finished invoke: name: fimo13 status: 0 time: 1.270618 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background --motif AGKAGATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa Finished invoke: name: fimo14 status: 0 time: 1.203881 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background --motif GSTAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa Finished invoke: name: fimo15 status: 0 time: 1.133488 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/fimo_out_16 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background --motif AACATSTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa Finished invoke: name: fimo16 status: 0 time: 1.170167 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/fimo_out_17 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background --motif ACCAAGCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa Finished invoke: name: fimo17 status: 0 time: 1.184031 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/fimo_out_18 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background --motif TAGAAAKA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa Finished invoke: name: fimo18 status: 0 time: 1.195802 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/fimo_out_19 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background --motif GAACTYTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa Finished invoke: name: fimo19 status: 0 time: 1.200376 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/fimo_out_20 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background --motif TGNBKGRATTGAHGRTMBMARAGYTGGYS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa Finished invoke: name: fimo20 status: 0 time: 1.441674 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/fimo_out_21 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background --motif CGTTCTCY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa Finished invoke: name: fimo21 status: 0 time: 1.168433 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/fimo_out_22 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background --motif GCCATRAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa Finished invoke: name: fimo22 status: 0 time: 1.179057 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/fimo_out_23 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background --motif RGAATCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa Finished invoke: name: fimo23 status: 0 time: 1.191394 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/fimo_out_24 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background --motif AGYACTTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/AWRI1631--RPB2.fa Finished invoke: name: fimo24 status: 0 time: 1.180059 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/summary.tsv Finished invoke: name: summary status: 0 time: 0.209184 Done