******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrXVI:718223-719649 1.0000 100 chrVII:373824-374224 1.0000 100 chrXI:382571-384771 1.0000 100 chrIV:215378-216138 1.0000 100 chrVIII:235423-235862 1.0000 100 chrX:139036-139136 1.0000 100 chrXIV:417405-418370 1.0000 100 chrXII:918930-923866 1.0000 100 chrVIII:443441-443896 1.0000 100 chrXII:829053-829714 1.0000 100 chrXV:502916-504220 1.0000 100 chrXVI:108426-114719 1.0000 100 chrXIII:159120-160343 1.0000 100 chrXVI:653940-655256 1.0000 100 chrVIII:147470-148875 1.0000 100 chrII:413638-415446 1.0000 100 chrXI:522722-523328 1.0000 100 chrXV:841373-843051 1.0000 100 chrXV:320746-321550 1.0000 100 chrXIII:752759-754427 1.0000 100 chrVII:912761-913137 1.0000 100 chrIX:210532-211158 1.0000 100 chrIV:322081-323804 1.0000 100 chrVIII:286960-288391 1.0000 100 chrX:55995-56095 1.0000 100 chrXIV:108340-109502 1.0000 100 chrXIV:492353-492774 1.0000 100 chrXII:636486-640415 1.0000 100 chrIV:1449656-1451031 1.0000 100 chrVI:222723-223986 1.0000 100 chrXII:1017579-1019139 1.0000 100 chrXI:558447-559622 1.0000 100 chrV:306129-307636 1.0000 100 chrXVI:447418-448383 1.0000 100 chrVII:805896-807948 1.0000 100 chrXIV:242481-243285 1.0000 100 chrXII:827046-827850 1.0000 100 chrXII:261004-262790 1.0000 100 chrIX:265674-266299 1.0000 100 chrXV:908378-909274 1.0000 100 chrV:83108-83761 1.0000 100 chrIII:64572-64911 1.0000 100 chrII:611787-614918 1.0000 100 chrIV:552172-552976 1.0000 100 chrX:519595-519695 1.0000 100 chrXII:1028654-1030425 1.0000 100 chrXV:30976-33922 1.0000 100 chrIV:626455-628419 1.0000 100 chrXIII:557111-558456 1.0000 100 chrXIII:235082-235886 1.0000 100 chrIII:240403-241379 1.0000 100 chrX:647533-647633 1.0000 100 chrX:73519-73619 1.0000 100 chrXII:844583-845708 1.0000 100 chrXVI:875535-876391 1.0000 100 chrXIV:505457-507265 1.0000 100 chrXIII:878539-880318 1.0000 100 chrVII:614143-615623 1.0000 100 chrIX:190662-191875 1.0000 100 chrVII:96279-97403 1.0000 100 chrXIII:701593-703734 1.0000 100 chrVII:431810-432614 1.0000 100 chrXIII:671706-674865 1.0000 100 chrXI:100229-107355 1.0000 100 chrIX:266817-267667 1.0000 100 chrI:65071-67996 1.0000 100 chrVII:912459-912903 1.0000 100 chrXIII:272728-273090 1.0000 100 chrII:680178-682149 1.0000 100 chrXV:833493-834505 1.0000 100 chrXV:680222-680997 1.0000 100 chrIV:47338-47676 1.0000 100 chrIV:229655-230990 1.0000 100 chrXIV:493444-495203 1.0000 100 chrXIV:172260-174856 1.0000 100 chrII:393001-398116 1.0000 100 chrII:373349-375919 1.0000 100 chrXI:42325-43055 1.0000 100 chrXV:904777-906478 1.0000 100 chrXV:418644-419045 1.0000 100 chrXVI:451187-453330 1.0000 100 chrIV:1059869-1061750 1.0000 100 chrVII:970255-973867 1.0000 100 chrVII:798322-800493 1.0000 100 chrVII:20951-22495 1.0000 100 chrVII:130834-131289 1.0000 100 chrX:214009-214109 1.0000 100 chrIV:50709-51125 1.0000 100 chrXV:619513-624842 1.0000 100 chrXIV:654206-661797 1.0000 100 chrXI:325909-327792 1.0000 100 chrV:163290-164185 1.0000 100 chrXV:684990-685397 1.0000 100 chrXV:523023-523983 1.0000 100 chrV:510404-512544 1.0000 100 chrXV:416862-417666 1.0000 100 chrXVI:401059-402304 1.0000 100 chrXVI:897822-898911 1.0000 100 chrIX:156912-157309 1.0000 100 chrXII:1002103-1003125 1.0000 100 chrXVI:153743-154616 1.0000 100 chrVII:959837-961766 1.0000 100 chrIX:316562-318389 1.0000 100 chrVII:801216-801817 1.0000 100 chrXV:718865-719950 1.0000 100 chrXI:280924-282168 1.0000 100 chrIV:232728-233821 1.0000 100 chrXIII:759606-763301 1.0000 100 chrVII:56353-59041 1.0000 100 chrIV:769509-770215 1.0000 100 chrXVI:100616-101742 1.0000 100 chrXII:402186-402963 1.0000 100 chrXIII:368118-369461 1.0000 100 chrXII:328211-328649 1.0000 100 chrVII:516500-521332 1.0000 100 chrXI:554121-554529 1.0000 100 chrXIII:222238-224043 1.0000 100 chrIV:1241300-1241657 1.0000 100 chrII:304339-305856 1.0000 100 chrV:396560-398206 1.0000 100 chrXVI:249825-250140 1.0000 100 chrX:211888-211988 1.0000 100 chrIII:137480-139480 1.0000 100 chrXV:109914-111096 1.0000 100 chrII:556403-558606 1.0000 100 chrXIV:166718-168043 1.0000 100 chrII:234493-236148 1.0000 100 chrI:75048-75984 1.0000 100 chrX:464353-464453 1.0000 100 chrXVI:471498-471997 1.0000 100 chrVIII:553927-554888 1.0000 100 chrIII:220877-223044 1.0000 100 chrXV:444417-446386 1.0000 100 chrX:153318-153418 1.0000 100 chrVIII:109813-110617 1.0000 100 chrIV:915206-916607 1.0000 100 chrV:266096-268373 1.0000 100 chrXII:711974-713108 1.0000 100 chrVI:52789-54995 1.0000 100 chrV:281930-284036 1.0000 100 chrXIII:115332-118935 1.0000 100 chrIV:200723-201808 1.0000 100 chrIV:205018-210688 1.0000 100 chrV:138551-140634 1.0000 100 chrVII:473981-474380 1.0000 100 chrXII:125419-127371 1.0000 100 chrVII:647873-648689 1.0000 100 chrVIII:290544-292588 1.0000 100 chrIII:57187-58901 1.0000 100 chrIV:170447-170803 1.0000 100 chrXIV:530709-531599 1.0000 100 chrIV:392424-392928 1.0000 100 chrXII:897913-899889 1.0000 100 chrIV:468219-468771 1.0000 100 chrV:414620-415588 1.0000 100 chrII:777295-778099 1.0000 100 chrXIV:707883-708660 1.0000 100 chrIV:491274-492788 1.0000 100 chrXIII:294402-294770 1.0000 100 chrXV:135736-137075 1.0000 100 chrXVI:404671-406490 1.0000 100 chrVII:227211-228532 1.0000 100 chrXV:797154-798940 1.0000 100 chrIX:25769-27136 1.0000 100 chrVIII:282088-283241 1.0000 100 chrV:74184-74988 1.0000 100 chrXI:612058-613742 1.0000 100 chrVIII:75216-76463 1.0000 100 chrXII:231825-234426 1.0000 100 chrIV:129625-130789 1.0000 100 chrXI:336490-337703 1.0000 100 chrVIII:34231-36318 1.0000 100 chrXIV:508259-509268 1.0000 100 chrIII:162020-163488 1.0000 100 chrXIV:243021-243396 1.0000 100 chrIII:191327-192291 1.0000 100 chrX:172613-172713 1.0000 100 chrXV:866867-868337 1.0000 100 chrVII:146197-146978 1.0000 100 chrII:118158-119122 1.0000 100 chrV:339651-342125 1.0000 100 chrXII:350424-351258 1.0000 100 chrXIV:65624-66684 1.0000 100 chrXV:909170-911717 1.0000 100 chrXIII:551743-553324 1.0000 100 chrXV:91614-94638 1.0000 100 chrXVI:794759-796286 1.0000 100 chrX:123721-123821 1.0000 100 chrVIII:451003-453219 1.0000 100 chrXV:414102-414479 1.0000 100 chrVIII:381255-382984 1.0000 100 chrXIV:229376-231115 1.0000 100 chrXII:1026829-1027304 1.0000 100 chrVI:224198-225465 1.0000 100 chrIII:23627-24306 1.0000 100 chrV:298769-302162 1.0000 100 chrXVI:121980-125815 1.0000 100 chrXVI:822601-824406 1.0000 100 chrII:477340-477938 1.0000 100 chrXIII:732314-733640 1.0000 100 chrXV:630815-631619 1.0000 100 chrVII:87945-88556 1.0000 100 chrXV:54221-54615 1.0000 100 chrIV:1488846-1490130 1.0000 100 chrVIII:487299-488259 1.0000 100 chrXV:59819-60346 1.0000 100 chrIV:183790-184062 1.0000 100 chrXVI:692542-695209 1.0000 100 chrXV:677746-678976 1.0000 100 chrV:77821-79987 1.0000 100 chrX:569191-569291 1.0000 100 chrXI:617487-618940 1.0000 100 chrXV:732602-732979 1.0000 100 chrX:140574-140674 1.0000 100 chrIX:98050-99625 1.0000 100 chrXI:246175-246704 1.0000 100 chrXIII:507271-508061 1.0000 100 chrI:222593-223397 1.0000 100 chrVII:648552-649193 1.0000 100 chrXII:544103-546336 1.0000 100 chrXV:738560-739157 1.0000 100 chrXIV:289684-292363 1.0000 100 chrXV:899807-901363 1.0000 100 chrXIII:296846-298975 1.0000 100 chrIV:541133-542094 1.0000 100 chrIV:1453272-1454309 1.0000 100 chrV:166726-167800 1.0000 100 chrXII:347938-348935 1.0000 100 chrXIV:510788-512466 1.0000 100 chrXVI:370987-373424 1.0000 100 chrXVI:107575-108277 1.0000 100 chrVII:604400-604608 1.0000 100 chrXV:722667-725856 1.0000 100 chrXIV:442947-444531 1.0000 100 chrXII:855639-857733 1.0000 100 chrVIII:504041-505781 1.0000 100 chrIV:381555-385072 1.0000 100 chrIV:45018-46338 1.0000 100 chrVII:398314-400800 1.0000 100 chrXVI:75202-76476 1.0000 100 chrXIII:276977-279903 1.0000 100 chrV:335351-336016 1.0000 100 chrXI:177935-178541 1.0000 100 chrII:143928-145648 1.0000 100 chrVII:726760-728333 1.0000 100 chrIII:31869-32273 1.0000 100 chrVII:1048172-1050199 1.0000 100 chrXVI:453663-454599 1.0000 100 chrVII:824154-827050 1.0000 100 chrX:99265-99365 1.0000 100 chrVII:93198-93514 1.0000 100 chrXI:397102-397906 1.0000 100 chrX:663450-663550 1.0000 100 chrX:75734-75834 1.0000 100 chrIV:913846-915029 1.0000 100 chrXVI:802728-803331 1.0000 100 chrXII:242015-243813 1.0000 100 chrVIII:495590-496538 1.0000 100 chrIV:1239222-1240345 1.0000 100 chrVIII:225235-226975 1.0000 100 chrIV:1245449-1246296 1.0000 100 chrXVI:750456-751323 1.0000 100 chrXII:500878-501409 1.0000 100 chrIV:579198-580914 1.0000 100 chrIX:68523-70017 1.0000 100 chrIV:1078851-1080196 1.0000 100 chrV:481878-482218 1.0000 100 chrIV:488777-489215 1.0000 100 chrVIII:119474-122047 1.0000 100 chrVII:935882-936198 1.0000 100 chrXIV:663084-664037 1.0000 100 chrXIV:402208-402962 1.0000 100 chrX:95546-95646 1.0000 100 chrXVI:731413-731980 1.0000 100 chrXVI:85579-86209 1.0000 100 chrXV:80161-81652 1.0000 100 chrXIV:331108-332568 1.0000 100 chrXV:84783-85587 1.0000 100 chrXV:505538-507179 1.0000 100 chrXIII:352790-353345 1.0000 100 chrV:423355-425551 1.0000 100 chrXIV:665446-667395 1.0000 100 chrXV:778129-779648 1.0000 100 chrIV:1162391-1164889 1.0000 100 chrXI:337548-338956 1.0000 100 chrXII:129625-129985 1.0000 100 chrXV:732841-733182 1.0000 100 chrIV:227887-228691 1.0000 100 chrIV:160559-161397 1.0000 100 chrVII:438804-440181 1.0000 100 chrX:121036-121136 1.0000 100 chrV:66699-69122 1.0000 100 chrXI:109062-110637 1.0000 100 chrXI:610257-610797 1.0000 100 chrII:138371-138931 1.0000 100 chrXV:960858-967536 1.0000 100 chrXI:333835-335197 1.0000 100 chrXV:1003770-1005107 1.0000 100 chrXII:282610-284139 1.0000 100 chrXVI:730834-731531 1.0000 100 chrIII:56395-57081 1.0000 100 chrXII:498651-499945 1.0000 100 chrX:187669-187769 1.0000 100 chrVII:363886-364633 1.0000 100 chrXVI:302883-304467 1.0000 100 chrVII:307693-308646 1.0000 100 chrVI:82294-84545 1.0000 100 chrVII:479018-483162 1.0000 100 chrXV:913222-913597 1.0000 100 chrXIII:18848-20756 1.0000 100 chrXII:809626-816228 1.0000 100 chrIV:1236227-1238616 1.0000 100 chrXII:720319-721560 1.0000 100 chrVI:56760-57564 1.0000 100 chrV:222997-225144 1.0000 100 chrXII:896256-896578 1.0000 100 chrVII:915716-916799 1.0000 100 chrIV:555288-556802 1.0000 100 chrVII:1019534-1021809 1.0000 100 chrXII:444928-447557 1.0000 100 chrV:205211-207063 1.0000 100 chrIV:808385-810516 1.0000 100 chrXVI:819450-820517 1.0000 100 chrXV:604907-606213 1.0000 100 chrXVI:868819-869868 1.0000 100 chrXII:546179-547735 1.0000 100 chrIV:308457-310319 1.0000 100 chrXVI:700312-700904 1.0000 100 chrXII:793984-796251 1.0000 100 chrVII:849834-850258 1.0000 100 chrXV:28583-31036 1.0000 100 chrIV:1114435-1115076 1.0000 100 chrXVI:480977-482055 1.0000 100 chrXI:282638-285055 1.0000 100 chrXV:889661-891511 1.0000 100 chrXV:308215-308818 1.0000 100 chrVII:876395-878272 1.0000 100 chrXI:48782-49037 1.0000 100 chrXII:506093-507742 1.0000 100 chrII:114130-115263 1.0000 100 chrXIII:554252-556613 1.0000 100 chrX:154555-154655 1.0000 100 chrIII:59205-60958 1.0000 100 chrVI:43155-44378 1.0000 100 chrX:189838-189938 1.0000 100 chrXIII:669247-669660 1.0000 100 chrXVI:104580-104977 1.0000 100 chrXII:515119-517055 1.0000 100 chrIX:128046-130140 1.0000 100 chrXII:930396-932035 1.0000 100 chrXVI:136204-136862 1.0000 100 chrII:738987-739453 1.0000 100 chrIV:1262138-1262942 1.0000 100 chrXV:832043-832978 1.0000 100 chrX:156033-156133 1.0000 100 chrXIII:859328-860681 1.0000 100 chrIV:1301405-1302718 1.0000 100 chrVII:640589-642252 1.0000 100 chrXIV:588289-588545 1.0000 100 chrXII:513512-514983 1.0000 100 chrXVI:281936-283482 1.0000 100 chrXII:837427-839587 1.0000 100 chrVIII:104112-105540 1.0000 100 chrII:37234-38674 1.0000 100 chrIX:257438-258365 1.0000 100 chrIV:1265701-1266681 1.0000 100 chrVIII:160301-160910 1.0000 100 chrXII:371022-371952 1.0000 100 chrXI:208161-209533 1.0000 100 chrXIII:162774-164516 1.0000 100 chrVII:252419-252804 1.0000 100 chrXI:431700-433130 1.0000 100 chrVII:698697-699501 1.0000 100 chrX:90510-90610 1.0000 100 chrIV:339965-341429 1.0000 100 chrXIII:890869-891599 1.0000 100 chrXIV:376387-376799 1.0000 100 chrXIII:549779-551429 1.0000 100 chrIV:117469-119017 1.0000 100 chrVI:89775-90947 1.0000 100 chrXII:1038580-1039679 1.0000 100 chrXVI:376776-377534 1.0000 100 chrXIII:511070-512254 1.0000 100 chrV:235206-237958 1.0000 100 chrXVI:350048-352456 1.0000 100 chrIX:212632-214737 1.0000 100 chrXIV:24167-27258 1.0000 100 chrIV:163414-163871 1.0000 100 chrXIII:498886-500940 1.0000 100 chrVIII:492187-492887 1.0000 100 chrXIII:698735-699126 1.0000 100 chrIV:1269705-1271244 1.0000 100 chrXVI:879759-880461 1.0000 100 chrII:712619-713069 1.0000 100 chrV:141853-142499 1.0000 100 chrX:453180-453280 1.0000 100 chrVIII:229989-231130 1.0000 100 chrIV:384875-385915 1.0000 100 chrVII:846482-848548 1.0000 100 chrXI:258968-260113 1.0000 100 chrXII:867484-868880 1.0000 100 chrXII:368809-370463 1.0000 100 chrIV:836612-838131 1.0000 100 chrIV:181400-181728 1.0000 100 chrXIV:216044-217037 1.0000 100 chrIV:766107-766962 1.0000 100 chrXIII:161759-162884 1.0000 100 chrV:401153-401957 1.0000 100 chrXV:1015340-1017943 1.0000 100 chrIV:306023-307967 1.0000 100 chrVII:610346-612386 1.0000 100 chrXII:1003134-1004608 1.0000 100 chrXIII:85487-86229 1.0000 100 chrXIV:501402-502882 1.0000 100 chrXIV:61490-63142 1.0000 100 chrII:606079-607586 1.0000 100 chrVIII:80131-80697 1.0000 100 chrXI:44978-45978 1.0000 100 chrXV:838711-839515 1.0000 100 chrXV:1011811-1012832 1.0000 100 chrXV:795802-796606 1.0000 100 chrXVI:310415-311345 1.0000 100 chrIV:218102-218877 1.0000 100 chrVII:94174-94738 1.0000 100 chrXV:758794-759762 1.0000 100 chrXVI:65926-66617 1.0000 100 chrIV:525355-527632 1.0000 100 chrIII:15354-16797 1.0000 100 chrXIII:755375-755808 1.0000 100 chrIV:617002-618003 1.0000 100 chrVII:544941-546132 1.0000 100 chrVII:865975-867213 1.0000 100 chrVI:75077-76878 1.0000 100 chrVII:147775-149172 1.0000 100 chrI:141919-143807 1.0000 100 chrX:185493-185593 1.0000 100 chrV:85289-86779 1.0000 100 chrIV:330802-333459 1.0000 100 chrIII:176929-178946 1.0000 100 chrXIV:359715-361061 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 440 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 44000 N= 440 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.303 C 0.197 G 0.197 T 0.303 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RPB2/background): A 0.305 C 0.195 G 0.195 T 0.305 ******************************************************************************** ******************************************************************************** MOTIF WARAARARSAAGAAR MEME-1 width = 15 sites = 81 llr = 780 E-value = 2.0e-025 ******************************************************************************** -------------------------------------------------------------------------------- Motif WARAARARSAAGAAR MEME-1 Description -------------------------------------------------------------------------------- Simplified A 774673751aa2974 pos.-specific C :2:111::3::1:2: probability G :162:6336::7:26 matrix T 3::12::1::::1:: bits 2.4 2.1 1.9 1.7 * Relative 1.4 ** Entropy 1.2 * **** * (13.9 bits) 0.9 * * ***** * 0.7 *** *** ******* 0.5 *** *********** 0.2 *************** 0.0 --------------- Multilevel AAGAAGAAGAAGAAG consensus T A AGGC A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WARAARARSAAGAAR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chrXVI:875535-876391 + 55 1.96e-09 CACTACTGAA AAGAAGAAGAAGAAG TGTGTCTTGT chrX:214009-214109 - 23 1.73e-08 ACTTTTCTAA AAGAAGAAGAAGACG TTCATCAACA chrX:140574-140674 + 1 2.95e-08 . AAGAAAAAGAAGAAG GAGAAGAGGG chrIV:617002-618003 - 38 4.15e-08 AACGAATCTG AAGAAGAGGAAGAGG AAGAGTGGAA chrIV:1239222-1240345 + 27 4.15e-08 GCTGCTGAAG AAGAAAAGGAAGAAG AAGCTAAGGA chrVII:96279-97403 + 43 8.77e-08 GAAATTCCTG AAGAACAAGAAGAAG ATACCAATAA chrXV:1003770-1005107 - 14 1.64e-07 AGTACAAGAA AAGGAGAAGAAGAAA AATTTTTGAC chrXV:619513-624842 - 58 1.64e-07 TAGATAGACA AAGAAAAAGAAGACG ACATAAGCCA chrV:481878-482218 + 79 2.90e-07 TGAGAGGAGG ACGAAGAGGAAGAGG AAGGGGC chrXIII:235082-235886 + 20 6.04e-07 ATGAACAAGG TAAAAAAGGAAGAAG TAGTGGAGAG chrVII:252419-252804 + 83 8.30e-07 GTTGAAGCCG AAAAAAAAGAAGAGG AAG chrXII:1028654-1030425 + 85 8.30e-07 AAATTTGACC AAGAAGGAAAAGAAG G chrVII:94174-94738 + 16 1.14e-06 ACCGGCACCA AAGGAAGACAAGAAG AAAAAATCCA chrIV:579198-580914 - 22 1.14e-06 GAGTATGGAA TAGCAGAAGAAGAAA TACCTTTACC chrXI:280924-282168 - 72 1.33e-06 AAAAAGATTC AAAAAAGGCAAGAAG GACTCAGAAA chrXV:680222-680997 - 86 1.33e-06 . AAGAAAAAGAAGAGA AGTTATTCTT chrIV:1488846-1490130 - 37 1.55e-06 AATATTATTA TAGAACAAGAAGAAA GACCGCTCTT chrXII:350424-351258 - 68 1.55e-06 GAGGTTGGAA ACGAAGACGAAGAAG TCAAACAAGA chrIV:769509-770215 + 52 1.55e-06 TCAGGTCTCC ACGACGGAGAAGAAG GAGACAAGCA chrXVI:107575-108277 + 63 3.55e-06 GAACTGGTAA TAGAACAACAAGAAA ACGTAGACGT chrXV:904777-906478 + 63 3.55e-06 GGCGAAGATG AAGATAATGAAGAAG ACAATGAAGA chrXII:129625-129985 - 85 4.60e-06 T ACAAAGGGCAAGAAA TGCCTAATAC chrXI:397102-397906 - 40 4.60e-06 GAAATACAAT ACAATGAAGAAGAGG GATGCTGAAA chrX:99265-99365 + 7 4.60e-06 ATAAAT AAAAAAAAAAAGAAG TGTCAAATCA chrV:414620-415588 + 10 5.87e-06 CTAAGCAAG AAAACGGGGAAGAAA ACGATGACAA chrXVI:879759-880461 + 46 7.42e-06 AAAAATAATG AAGGAGAACAACAAA AAAAAGGACC chrVIII:34231-36318 - 55 8.32e-06 GGCTCAAGCC AAGATGGACAAGAGA GCTAAGAACT chrXVI:404671-406490 + 26 8.32e-06 TGAATTCGGT TTGAAGAACAAGAAG GAAATTTACA chrIV:1241300-1241657 + 17 8.32e-06 CATCAACATC AAGAAGGTGAAAACG GTCCAGCCCG chrX:647533-647633 + 38 8.32e-06 GCTGAATACT TCAGAGATGAAGAAG GTCAAGATGT chrIII:64572-64911 - 31 8.32e-06 AGTAAATTTA AGGAAGATCAAGAAA GAATCAAGGT chrXIII:859328-860681 - 2 9.34e-06 TGAATTGACT AAGCTGAAGAACAAG T chrX:189838-189938 + 66 9.34e-06 TTATGTATAT TAGGAGAACAAAACG AGAAAAAAAT chrVIII:495590-496538 + 58 9.34e-06 GCTGTAAGCC AAACTAAGGAAGAAG AGAAGCCAAT chrIV:1114435-1115076 - 50 1.04e-05 ACTTCCCTAT AAATAAGAGAAGAAA ACAGAAAAAA chrXII:500878-501409 - 30 1.04e-05 AAAATGGCAA TGAATGAACAAGAAG TTATAACAAC chrXIV:417405-418370 - 33 1.04e-05 AACATGAAGC AAAAACATGAAGAAA GGATAAAAAA chrXVI:471498-471997 + 38 1.17e-05 ACAATGACTT AGGCAAAGGAAGACG TCTTTGTGTT chrIX:266817-267667 - 53 1.30e-05 GCCCTGCACC AAAGAGGCCAAGAAG CCGCGTTTGT chrVI:75077-76878 - 73 1.44e-05 AACTAGCATA AAAAAAAAAAAGAAA GCTTCCAATA chrXV:795802-796606 - 76 1.44e-05 CATGTACTGG AAACTGAGCAAGACG TGGGATTACA chrXII:498651-499945 - 1 1.44e-05 ATCGACCTTG TAGTAGGACAAGACA chrVII:307693-308646 + 21 1.59e-05 ACAATTGATG TCGGTGATGAAGAAG GCCCAAGAAC chrXII:282610-284139 + 23 1.59e-05 TGTCAGAACC AAGGACAGCAACAAG GATGTTGTCG chrXIII:554252-556613 - 64 1.76e-05 CAAGATTTAT TCAAAGAGGAAAAAA TCGATTTAAG chrXV:505538-507179 - 7 1.76e-05 TCTATAAAAG AAGGAAAACAAAAAA GGAAAA chrXIII:368118-369461 - 62 1.76e-05 AAGAATGCTG TAAAAAAACAAGTAG CCCAATGGAA chrVII:915716-916799 + 56 1.94e-05 GTGCCATCCC TGACAAAGGAAGAAG GATTACTTTA chrVII:959837-961766 + 24 1.94e-05 TTAGCTATGT TAGAAGAACAAGTCA AATGCAACCC chrX:187669-187769 - 27 2.14e-05 AATATGAAAA AAATAGAGGAAGTCG TGAATATACA chrX:156033-156133 - 5 2.60e-05 AACGTTGCCA AGGTTGATGAAGAAG GCCG chrXV:109914-111096 + 11 2.60e-05 CAGGTGAAGA AGGAAGAACAAAACA TTACTGATGG chrVIII:443441-443896 - 23 2.85e-05 ATTACAAGAG AAAAAGAAAAAAAAA TAAGTTACCC chrX:123721-123821 - 17 3.11e-05 CATGTGGACC ACGAAGAACTAGAGG AAAGGGAAAA chrXIII:159120-160343 - 68 3.39e-05 GAAGGGTATC TAAGAGAAGAAAAGA ACAGAACTAG chrIV:1162391-1164889 + 43 3.71e-05 GGTAGTACCA TAGTAGAAGAAATAG TTATCACCAG chrVIII:290544-292588 + 73 3.71e-05 AATGGTACCG TAGTAGAAGAAATAG TTATCACCAG chrXVI:249825-250140 + 22 3.71e-05 TATTGAGCCT AAAGAAATGAAGAGA GCTATGCCAT chrXVI:653940-655256 - 2 3.71e-05 AGCCCTGTAT TCAAAAAAGAAAAAA T chrV:141853-142499 + 16 4.04e-05 TACAAGGAAC TAGACAAGGAAAACG CCGGGTCTAA chrXIV:331108-332568 - 33 4.04e-05 AACGTTAACT AAATAGAAGAAATAG ATGAGACATC chrVIII:75216-76463 - 73 4.40e-05 GCTATATGCG AAAATGAGAAAAAAG GAACCGCTGA chrXV:59819-60346 - 34 4.78e-05 CTACAATATA AAGATGAAAAAAAAA AAAACAATCT chrXV:838711-839515 - 70 5.61e-05 TACAGGAATA TGATACAGCAAGAAG AGCAGAAAAA chrVIII:160301-160910 - 60 5.61e-05 ATTTTCGAAA TAGATAGAAAAGACG GGTAACGGAA chrXIII:352790-353345 + 10 5.61e-05 TCGAGCCGG TGGTACGGGAAGACG AGGGTAAGAG chrVII:726760-728333 + 28 5.61e-05 TCAATTAATC AAGAACGGTAAGAAG GTCACTGCTT chrXII:809626-816228 + 79 6.06e-05 GAAGGCTTAG AAAGAGAGCTAGAAA AGATGGC chrXIV:663084-664037 + 65 6.06e-05 GACTACTTGA AAAATGAGCAACACA AGAACCTACT chrXIV:289684-292363 + 82 6.06e-05 ATCGTTGCAC TTGAAAGGGAAGAAA AAAC chrV:163290-164185 + 14 6.06e-05 GAGAGAGATC AAAATCGACAACAAG TTGAAGATTC chrXIII:498886-500940 + 37 6.54e-05 TCATTTTTGT TAGTAAGGGAACAAA TTTAATTTAA chrVIII:504041-505781 - 46 6.54e-05 GTCCACCGTA TCACCGATGAAGAAG CCTCTTACAA chrV:166726-167800 + 78 7.60e-05 ATTAGAGAAT TCGGTGAAAAAGAAA AGAAAAAT chrIV:1245449-1246296 - 8 8.19e-05 AATAAACTAC AAAAAAGTCAAAAGG ACATAAA chrII:777295-778099 - 16 8.19e-05 CAGTCAAAAG AAAACCGACAACAAG GAAAATTGGA chrXII:837427-839587 - 40 8.79e-05 CAAACCACTT TCGAAAGAGAAGTCA ACTCTGACTT chrXIII:511070-512254 + 77 9.43e-05 TCGCCTAGTT AAACCAATGAAGAGG TGGGCGAAC chrXV:833493-834505 - 83 1.16e-04 TGT ACATCGGAGAAGTAG ACCTGACGTC chrIV:308457-310319 + 2 1.23e-04 A AAAGAGAGCTAGAGA AAAGGCTGAA chrIV:488777-489215 - 38 2.00e-04 TTTCGACATA TAATAGGCGAACAGG CCTTAAAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WARAARARSAAGAAR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:875535-876391 2e-09 54_[+1]_31 chrX:214009-214109 1.7e-08 22_[-1]_63 chrX:140574-140674 3e-08 [+1]_85 chrIV:617002-618003 4.2e-08 37_[-1]_48 chrIV:1239222-1240345 4.2e-08 26_[+1]_59 chrVII:96279-97403 8.8e-08 42_[+1]_43 chrXV:1003770-1005107 1.6e-07 13_[-1]_72 chrXV:619513-624842 1.6e-07 57_[-1]_28 chrV:481878-482218 2.9e-07 78_[+1]_7 chrXIII:235082-235886 6e-07 19_[+1]_66 chrVII:252419-252804 8.3e-07 82_[+1]_3 chrXII:1028654-1030425 8.3e-07 84_[+1]_1 chrVII:94174-94738 1.1e-06 15_[+1]_70 chrIV:579198-580914 1.1e-06 21_[-1]_64 chrXI:280924-282168 1.3e-06 71_[-1]_14 chrXV:680222-680997 1.3e-06 85_[-1] chrIV:1488846-1490130 1.5e-06 36_[-1]_49 chrXII:350424-351258 1.5e-06 67_[-1]_18 chrIV:769509-770215 1.5e-06 51_[+1]_34 chrXVI:107575-108277 3.6e-06 62_[+1]_23 chrXV:904777-906478 3.6e-06 62_[+1]_23 chrXII:129625-129985 4.6e-06 84_[-1]_1 chrXI:397102-397906 4.6e-06 39_[-1]_46 chrX:99265-99365 4.6e-06 6_[+1]_79 chrV:414620-415588 5.9e-06 9_[+1]_76 chrXVI:879759-880461 7.4e-06 45_[+1]_40 chrVIII:34231-36318 8.3e-06 54_[-1]_31 chrXVI:404671-406490 8.3e-06 25_[+1]_60 chrIV:1241300-1241657 8.3e-06 16_[+1]_69 chrX:647533-647633 8.3e-06 37_[+1]_48 chrIII:64572-64911 8.3e-06 30_[-1]_55 chrXIII:859328-860681 9.3e-06 1_[-1]_84 chrX:189838-189938 9.3e-06 65_[+1]_20 chrVIII:495590-496538 9.3e-06 57_[+1]_28 chrIV:1114435-1115076 1e-05 49_[-1]_36 chrXII:500878-501409 1e-05 29_[-1]_56 chrXIV:417405-418370 1e-05 32_[-1]_53 chrXVI:471498-471997 1.2e-05 37_[+1]_48 chrIX:266817-267667 1.3e-05 52_[-1]_33 chrVI:75077-76878 1.4e-05 72_[-1]_13 chrXV:795802-796606 1.4e-05 75_[-1]_10 chrXII:498651-499945 1.4e-05 [-1]_85 chrVII:307693-308646 1.6e-05 20_[+1]_65 chrXII:282610-284139 1.6e-05 22_[+1]_63 chrXIII:554252-556613 1.8e-05 63_[-1]_22 chrXV:505538-507179 1.8e-05 6_[-1]_79 chrXIII:368118-369461 1.8e-05 61_[-1]_24 chrVII:915716-916799 1.9e-05 55_[+1]_30 chrVII:959837-961766 1.9e-05 23_[+1]_62 chrX:187669-187769 2.1e-05 26_[-1]_59 chrX:156033-156133 2.6e-05 4_[-1]_81 chrXV:109914-111096 2.6e-05 10_[+1]_75 chrVIII:443441-443896 2.8e-05 22_[-1]_63 chrX:123721-123821 3.1e-05 16_[-1]_69 chrXIII:159120-160343 3.4e-05 67_[-1]_18 chrIV:1162391-1164889 3.7e-05 42_[+1]_43 chrVIII:290544-292588 3.7e-05 72_[+1]_13 chrXVI:249825-250140 3.7e-05 21_[+1]_64 chrXVI:653940-655256 3.7e-05 1_[-1]_84 chrV:141853-142499 4e-05 15_[+1]_70 chrXIV:331108-332568 4e-05 32_[-1]_53 chrVIII:75216-76463 4.4e-05 72_[-1]_13 chrXV:59819-60346 4.8e-05 33_[-1]_52 chrXV:838711-839515 5.6e-05 69_[-1]_16 chrVIII:160301-160910 5.6e-05 59_[-1]_26 chrXIII:352790-353345 5.6e-05 9_[+1]_76 chrVII:726760-728333 5.6e-05 27_[+1]_58 chrXII:809626-816228 6.1e-05 78_[+1]_7 chrXIV:663084-664037 6.1e-05 64_[+1]_21 chrXIV:289684-292363 6.1e-05 81_[+1]_4 chrV:163290-164185 6.1e-05 13_[+1]_72 chrXIII:498886-500940 6.5e-05 36_[+1]_49 chrVIII:504041-505781 6.5e-05 45_[-1]_40 chrV:166726-167800 7.6e-05 77_[+1]_8 chrIV:1245449-1246296 8.2e-05 7_[-1]_78 chrII:777295-778099 8.2e-05 15_[-1]_70 chrXII:837427-839587 8.8e-05 39_[-1]_46 chrXIII:511070-512254 9.4e-05 76_[+1]_9 chrXV:833493-834505 0.00012 82_[-1]_3 chrIV:308457-310319 0.00012 1_[+1]_84 chrIV:488777-489215 0.0002 37_[-1]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WARAARARSAAGAAR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WARAARARSAAGAAR width=15 seqs=81 chrXVI:875535-876391 ( 55) AAGAAGAAGAAGAAG 1 chrX:214009-214109 ( 23) AAGAAGAAGAAGACG 1 chrX:140574-140674 ( 1) AAGAAAAAGAAGAAG 1 chrIV:617002-618003 ( 38) AAGAAGAGGAAGAGG 1 chrIV:1239222-1240345 ( 27) AAGAAAAGGAAGAAG 1 chrVII:96279-97403 ( 43) AAGAACAAGAAGAAG 1 chrXV:1003770-1005107 ( 14) AAGGAGAAGAAGAAA 1 chrXV:619513-624842 ( 58) AAGAAAAAGAAGACG 1 chrV:481878-482218 ( 79) ACGAAGAGGAAGAGG 1 chrXIII:235082-235886 ( 20) TAAAAAAGGAAGAAG 1 chrVII:252419-252804 ( 83) AAAAAAAAGAAGAGG 1 chrXII:1028654-1030425 ( 85) AAGAAGGAAAAGAAG 1 chrVII:94174-94738 ( 16) AAGGAAGACAAGAAG 1 chrIV:579198-580914 ( 22) TAGCAGAAGAAGAAA 1 chrXI:280924-282168 ( 72) AAAAAAGGCAAGAAG 1 chrXV:680222-680997 ( 86) AAGAAAAAGAAGAGA 1 chrIV:1488846-1490130 ( 37) TAGAACAAGAAGAAA 1 chrXII:350424-351258 ( 68) ACGAAGACGAAGAAG 1 chrIV:769509-770215 ( 52) ACGACGGAGAAGAAG 1 chrXVI:107575-108277 ( 63) TAGAACAACAAGAAA 1 chrXV:904777-906478 ( 63) AAGATAATGAAGAAG 1 chrXII:129625-129985 ( 85) ACAAAGGGCAAGAAA 1 chrXI:397102-397906 ( 40) ACAATGAAGAAGAGG 1 chrX:99265-99365 ( 7) AAAAAAAAAAAGAAG 1 chrV:414620-415588 ( 10) AAAACGGGGAAGAAA 1 chrXVI:879759-880461 ( 46) AAGGAGAACAACAAA 1 chrVIII:34231-36318 ( 55) AAGATGGACAAGAGA 1 chrXVI:404671-406490 ( 26) TTGAAGAACAAGAAG 1 chrIV:1241300-1241657 ( 17) AAGAAGGTGAAAACG 1 chrX:647533-647633 ( 38) TCAGAGATGAAGAAG 1 chrIII:64572-64911 ( 31) AGGAAGATCAAGAAA 1 chrXIII:859328-860681 ( 2) AAGCTGAAGAACAAG 1 chrX:189838-189938 ( 66) TAGGAGAACAAAACG 1 chrVIII:495590-496538 ( 58) AAACTAAGGAAGAAG 1 chrIV:1114435-1115076 ( 50) AAATAAGAGAAGAAA 1 chrXII:500878-501409 ( 30) TGAATGAACAAGAAG 1 chrXIV:417405-418370 ( 33) AAAAACATGAAGAAA 1 chrXVI:471498-471997 ( 38) AGGCAAAGGAAGACG 1 chrIX:266817-267667 ( 53) AAAGAGGCCAAGAAG 1 chrVI:75077-76878 ( 73) AAAAAAAAAAAGAAA 1 chrXV:795802-796606 ( 76) AAACTGAGCAAGACG 1 chrXII:498651-499945 ( 1) TAGTAGGACAAGACA 1 chrVII:307693-308646 ( 21) TCGGTGATGAAGAAG 1 chrXII:282610-284139 ( 23) AAGGACAGCAACAAG 1 chrXIII:554252-556613 ( 64) TCAAAGAGGAAAAAA 1 chrXV:505538-507179 ( 7) AAGGAAAACAAAAAA 1 chrXIII:368118-369461 ( 62) TAAAAAAACAAGTAG 1 chrVII:915716-916799 ( 56) TGACAAAGGAAGAAG 1 chrVII:959837-961766 ( 24) TAGAAGAACAAGTCA 1 chrX:187669-187769 ( 27) AAATAGAGGAAGTCG 1 chrX:156033-156133 ( 5) AGGTTGATGAAGAAG 1 chrXV:109914-111096 ( 11) AGGAAGAACAAAACA 1 chrVIII:443441-443896 ( 23) AAAAAGAAAAAAAAA 1 chrX:123721-123821 ( 17) ACGAAGAACTAGAGG 1 chrXIII:159120-160343 ( 68) TAAGAGAAGAAAAGA 1 chrIV:1162391-1164889 ( 43) TAGTAGAAGAAATAG 1 chrVIII:290544-292588 ( 73) TAGTAGAAGAAATAG 1 chrXVI:249825-250140 ( 22) AAAGAAATGAAGAGA 1 chrXVI:653940-655256 ( 2) TCAAAAAAGAAAAAA 1 chrV:141853-142499 ( 16) TAGACAAGGAAAACG 1 chrXIV:331108-332568 ( 33) AAATAGAAGAAATAG 1 chrVIII:75216-76463 ( 73) AAAATGAGAAAAAAG 1 chrXV:59819-60346 ( 34) AAGATGAAAAAAAAA 1 chrXV:838711-839515 ( 70) TGATACAGCAAGAAG 1 chrVIII:160301-160910 ( 60) TAGATAGAAAAGACG 1 chrXIII:352790-353345 ( 10) TGGTACGGGAAGACG 1 chrVII:726760-728333 ( 28) AAGAACGGTAAGAAG 1 chrXII:809626-816228 ( 79) AAAGAGAGCTAGAAA 1 chrXIV:663084-664037 ( 65) AAAATGAGCAACACA 1 chrXIV:289684-292363 ( 82) TTGAAAGGGAAGAAA 1 chrV:163290-164185 ( 14) AAAATCGACAACAAG 1 chrXIII:498886-500940 ( 37) TAGTAAGGGAACAAA 1 chrVIII:504041-505781 ( 46) TCACCGATGAAGAAG 1 chrV:166726-167800 ( 78) TCGGTGAAAAAGAAA 1 chrIV:1245449-1246296 ( 8) AAAAAAGTCAAAAGG 1 chrII:777295-778099 ( 16) AAAACCGACAACAAG 1 chrXII:837427-839587 ( 40) TCGAAAGAGAAGTCA 1 chrXIII:511070-512254 ( 77) AAACCAATGAAGAGG 1 chrXV:833493-834505 ( 83) ACATCGGAGAAGTAG 1 chrIV:308457-310319 ( 2) AAAGAGAGCTAGAGA 1 chrIV:488777-489215 ( 38) TAATAGGCGAACAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WARAARARSAAGAAR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 37840 bayes= 10.3485 E= 2.0e-025 110 -1298 -1298 18 120 -17 -98 -363 54 -1298 151 -1298 93 -98 -17 -104 125 -117 -1298 -72 7 -66 151 -1298 125 -1298 48 -1298 80 -239 61 -117 -163 72 154 -462 166 -1298 -1298 -304 171 -1298 -1298 -1298 -72 -98 188 -1298 156 -1298 -1298 -163 110 -7 -28 -1298 28 -1298 169 -1298 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WARAARARSAAGAAR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 81 E= 2.0e-025 0.654321 0.000000 0.000000 0.345679 0.703704 0.172840 0.098765 0.024691 0.444444 0.000000 0.555556 0.000000 0.580247 0.098765 0.172840 0.148148 0.728395 0.086420 0.000000 0.185185 0.320988 0.123457 0.555556 0.000000 0.728395 0.000000 0.271605 0.000000 0.530864 0.037037 0.296296 0.135802 0.098765 0.320988 0.567901 0.012346 0.962963 0.000000 0.000000 0.037037 1.000000 0.000000 0.000000 0.000000 0.185185 0.098765 0.716049 0.000000 0.901235 0.000000 0.000000 0.098765 0.654321 0.185185 0.160494 0.000000 0.370370 0.000000 0.629630 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WARAARARSAAGAAR MEME-1 regular expression -------------------------------------------------------------------------------- [AT]A[GA]AA[GA][AG][AG][GC]AAGAA[GA] -------------------------------------------------------------------------------- Time 189.75 secs. ******************************************************************************** ******************************************************************************** MOTIF CASCAGCASCV MEME-2 width = 11 sites = 33 llr = 349 E-value = 6.0e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CASCAGCASCV MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a::6:19::4 pos.-specific C 8:6a139:494 probability G ::4:36:16:2 matrix T 1::::2:::1: bits 2.4 * 2.1 * 1.9 * * 1.7 ** * * * Relative 1.4 ** * ** * Entropy 1.2 **** **** (15.3 bits) 0.9 **** ***** 0.7 ********** 0.5 *********** 0.2 *********** 0.0 ----------- Multilevel CACCAGCAGCA consensus G GC C C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASCAGCASCV MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------- chrXII:867484-868880 - 67 2.49e-07 TACCCATAAG CAGCAGCAGCC TGAGTACCAT chrIV:1239222-1240345 - 1 5.25e-07 GCAGCATCAC CACCGGCAGCA chrXI:258968-260113 - 2 6.93e-07 GCAGCTAGAG CACCGGCACCC A chrXII:498651-499945 - 76 9.05e-07 GCCAAGAAAA CACCAGCACCA CAAGTTGGGT chrXVI:370987-373424 - 43 9.05e-07 ACATTGAAGA CACCAGCACCA CCATTTTCAG chrIII:137480-139480 - 89 1.21e-06 T CAGCACCAGCC TTGTCGAAGA chrVII:94174-94738 + 5 1.47e-06 TTAA CACCGGCACCA AAGGAAGACA chrIV:200723-201808 - 13 1.47e-06 TCTGGAGCAC CACCACCAGCG ATTAAACCTC chrVII:610346-612386 - 3 1.75e-06 TCGTGGTGTT CAGCGCCAGCC CA chrVII:87945-88556 + 18 1.92e-06 ACCACTTCAA CAGCACCAGCA ACCACCTATC chrXII:515119-517055 - 16 2.29e-06 CCGGAGAAGG CACCACCACCG ACGGATGAGG chrVII:912459-912903 - 10 4.20e-06 AGGTCGTTAC CACCGTCACCC ACCATACAA chrIV:227887-228691 - 41 4.65e-06 TTAACTTCCA CAGCATCAGCG ACCAGGTTTT chrXVI:108426-114719 - 45 4.65e-06 TGAGCATATG CAGCATCAGCG CTATTGCCAT chrV:335351-336016 - 49 5.29e-06 AGGGTGAGAC CAGCAGCGGCC CCGTTGTGAA chrXV:899807-901363 + 65 5.29e-06 GAAACAATTT CACCAGAAGCC TTCTTAACCT chrVI:52789-54995 + 71 5.29e-06 ACGTGAGTAA CACCATCACCG GAATCCAAAA chrXIII:752759-754427 + 32 5.29e-06 GAAACAATTT CACCAGAAGCC TTCTTAACCT chrXII:513512-514983 + 6 6.02e-06 ATAGG CACCCGCACCA GGAGTACCGT chrIV:769509-770215 + 90 7.16e-06 GTGTTAGTGC CACCGGCGGCA chrVIII:225235-226975 + 72 8.18e-06 GTAAATGATA CACCACCAGTC AAAAGAACAG chrVII:96279-97403 + 68 9.16e-06 ATACCAATAA CAGCAGCAGTA GTAGTAATGA chrXI:336490-337703 + 3 9.92e-06 AG CAGCAGCAGTG TTCGCGCCTG chrXV:505538-507179 - 39 1.10e-05 AAAGCCTTCT TACCACCAGCA ACGTCGATCT chrXVI:868819-869868 + 11 1.23e-05 TTAGAACCTC TAGCGGCACCC CAATCAAGAT chrXVI:897822-898911 + 82 1.23e-05 GTCTTCTTTA CAGCAGAAGCA TGCCCAAT chrIV:45018-46338 - 26 1.34e-05 GCAAAAGCTT CATCGGCAGCC TTGAACTCTT chrXIII:272728-273090 + 68 1.34e-05 TAATCATCTG CACCCCCACCG CGCGGTGTGG chrX:453180-453280 + 55 1.45e-05 CCGACAGCCT TAGCAGCACCG GTAGAGGATG chrXV:722667-725856 - 40 1.72e-05 ACCAATAAAG TAGCGGCACCA GATCTGAAGG chrVII:1048172-1050199 + 61 1.84e-05 GGACCAGTGT AACCGGCAGCC TTCAAGGCAG chrXIII:276977-279903 + 70 2.56e-05 TGGCCGTCCT CACCACCATCA ACTAAAAACA chrXV:109914-111096 - 27 2.75e-05 TTTTGTTCGA CACCATCAGTA ATGTTTTGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASCAGCASCV MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:867484-868880 2.5e-07 66_[-2]_23 chrIV:1239222-1240345 5.2e-07 [-2]_89 chrXI:258968-260113 6.9e-07 1_[-2]_88 chrXII:498651-499945 9e-07 75_[-2]_14 chrXVI:370987-373424 9e-07 42_[-2]_47 chrIII:137480-139480 1.2e-06 88_[-2]_1 chrVII:94174-94738 1.5e-06 4_[+2]_85 chrIV:200723-201808 1.5e-06 12_[-2]_77 chrVII:610346-612386 1.8e-06 2_[-2]_87 chrVII:87945-88556 1.9e-06 17_[+2]_72 chrXII:515119-517055 2.3e-06 15_[-2]_74 chrVII:912459-912903 4.2e-06 9_[-2]_80 chrIV:227887-228691 4.7e-06 40_[-2]_49 chrXVI:108426-114719 4.7e-06 44_[-2]_45 chrV:335351-336016 5.3e-06 48_[-2]_41 chrXV:899807-901363 5.3e-06 64_[+2]_25 chrVI:52789-54995 5.3e-06 70_[+2]_19 chrXIII:752759-754427 5.3e-06 31_[+2]_58 chrXII:513512-514983 6e-06 5_[+2]_84 chrIV:769509-770215 7.2e-06 89_[+2] chrVIII:225235-226975 8.2e-06 71_[+2]_18 chrVII:96279-97403 9.2e-06 67_[+2]_22 chrXI:336490-337703 9.9e-06 2_[+2]_87 chrXV:505538-507179 1.1e-05 38_[-2]_51 chrXVI:868819-869868 1.2e-05 10_[+2]_79 chrXVI:897822-898911 1.2e-05 81_[+2]_8 chrIV:45018-46338 1.3e-05 25_[-2]_64 chrXIII:272728-273090 1.3e-05 67_[+2]_22 chrX:453180-453280 1.4e-05 54_[+2]_35 chrXV:722667-725856 1.7e-05 39_[-2]_50 chrVII:1048172-1050199 1.8e-05 60_[+2]_29 chrXIII:276977-279903 2.6e-05 69_[+2]_20 chrXV:109914-111096 2.7e-05 26_[-2]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASCAGCASCV MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CASCAGCASCV width=11 seqs=33 chrXII:867484-868880 ( 67) CAGCAGCAGCC 1 chrIV:1239222-1240345 ( 1) CACCGGCAGCA 1 chrXI:258968-260113 ( 2) CACCGGCACCC 1 chrXII:498651-499945 ( 76) CACCAGCACCA 1 chrXVI:370987-373424 ( 43) CACCAGCACCA 1 chrIII:137480-139480 ( 89) CAGCACCAGCC 1 chrVII:94174-94738 ( 5) CACCGGCACCA 1 chrIV:200723-201808 ( 13) CACCACCAGCG 1 chrVII:610346-612386 ( 3) CAGCGCCAGCC 1 chrVII:87945-88556 ( 18) CAGCACCAGCA 1 chrXII:515119-517055 ( 16) CACCACCACCG 1 chrVII:912459-912903 ( 10) CACCGTCACCC 1 chrIV:227887-228691 ( 41) CAGCATCAGCG 1 chrXVI:108426-114719 ( 45) CAGCATCAGCG 1 chrV:335351-336016 ( 49) CAGCAGCGGCC 1 chrXV:899807-901363 ( 65) CACCAGAAGCC 1 chrVI:52789-54995 ( 71) CACCATCACCG 1 chrXIII:752759-754427 ( 32) CACCAGAAGCC 1 chrXII:513512-514983 ( 6) CACCCGCACCA 1 chrIV:769509-770215 ( 90) CACCGGCGGCA 1 chrVIII:225235-226975 ( 72) CACCACCAGTC 1 chrVII:96279-97403 ( 68) CAGCAGCAGTA 1 chrXI:336490-337703 ( 3) CAGCAGCAGTG 1 chrXV:505538-507179 ( 39) TACCACCAGCA 1 chrXVI:868819-869868 ( 11) TAGCGGCACCC 1 chrXVI:897822-898911 ( 82) CAGCAGAAGCA 1 chrIV:45018-46338 ( 26) CATCGGCAGCC 1 chrXIII:272728-273090 ( 68) CACCCCCACCG 1 chrX:453180-453280 ( 55) TAGCAGCACCG 1 chrXV:722667-725856 ( 40) TAGCGGCACCA 1 chrVII:1048172-1050199 ( 61) AACCGGCAGCC 1 chrXIII:276977-279903 ( 70) CACCACCATCA 1 chrXV:109914-111096 ( 27) CACCATCAGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASCAGCASCV MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 39600 bayes= 11.5723 E= 6.0e-004 -333 212 -1169 -133 171 -1169 -1169 -1169 -1169 156 102 -333 -1169 236 -1169 -1169 106 -168 64 -1169 -1169 49 156 -101 -175 222 -1169 -1169 162 -1169 -168 -1169 -1169 90 164 -333 -1169 217 -1169 -133 37 90 32 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASCAGCASCV MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 33 E= 6.0e-004 0.030303 0.848485 0.000000 0.121212 1.000000 0.000000 0.000000 0.000000 0.000000 0.575758 0.393939 0.030303 0.000000 1.000000 0.000000 0.000000 0.636364 0.060606 0.303030 0.000000 0.000000 0.272727 0.575758 0.151515 0.090909 0.909091 0.000000 0.000000 0.939394 0.000000 0.060606 0.000000 0.000000 0.363636 0.606061 0.030303 0.000000 0.878788 0.000000 0.121212 0.393939 0.363636 0.242424 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASCAGCASCV MEME-2 regular expression -------------------------------------------------------------------------------- CA[CG]C[AG][GC]CA[GC]C[ACG] -------------------------------------------------------------------------------- Time 361.48 secs. ******************************************************************************** ******************************************************************************** MOTIF TGNBKGRATTGAHGRTMBMARAGYTGGYS MEME-3 width = 29 sites = 11 llr = 224 E-value = 8.7e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGNBKGRATTGAHGRTMBMARAGYTGGYS MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::2:1:5831:a4:424:596932::::1 pos.-specific C :145:11:1:::4:::544::1:52::45 probability G 3923463::1a:1a51:3:14:7:1a7:4 matrix T 7:33531268::2:27141::::47:361 bits 2.4 * * * 2.1 * * * 1.9 * * * * 1.7 * ** * * Relative 1.4 * ** * * ** ** Entropy 1.2 * ** * * ** ** (29.4 bits) 0.9 ** * * *** * **** *** 0.7 ** *** * *** * ** ***** **** 0.5 ** *** ***** **************** 0.2 ***************************** 0.0 ----------------------------- Multilevel TGCCTGAATTGAAGGTCCAAAAGCTGGTC consensus G TGGTG A C A ATC G AT TCG sequence T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGNBKGRATTGAHGRTMBMARAGYTGGYS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrIV:117469-119017 + 44 2.00e-13 AAAAAGGAGT TGGCTGAATTGAAGGTCCAAAAGTTGTCC AGACCATCTT chrXI:431700-433130 + 67 6.32e-13 AATTATTATA GGTTTTGATTGACGGTCCAAAAGCTGGTG TTCCA chrXVI:731413-731980 - 49 7.42e-13 CAAAACCCTA TGCGTGATTTGAAGATCGAAAAGTTGGTC TTAAACATTT chrVIII:104112-105540 + 27 4.14e-12 AATTACTATA GGTTTTGATTGATGGTCCAAAAGCTGGTG TCCCACGTCA chrVII:648552-649193 - 32 8.34e-11 CAAAACCCTA TGCGTGATTTGAAGATCGAGAAATTGGTC TTGAACATCT chrIV:525355-527632 + 63 5.97e-10 TTGATGGATA TGACTGAATTGATGTTTTCAGAAATGGTC AAGGAGATC chrXI:612058-613742 - 45 6.47e-10 TGAACATTCC TGCTGGAACTGACGAGATCAAAGAGGGCC AAAGAAAGCA chrXVI:750456-751323 - 70 1.69e-09 TG TGCCGCAAAAGACGGACGAAGAACTGGCT ATTGAAAAAA chrIV:1301405-1302718 + 51 3.27e-09 AGAACCCTCA TGACATCATTGAAGGTATTAACGCTGGTG AAATTGAAAT chrI:75048-75984 - 59 7.76e-09 CATTGACCCA TCTGGGGAATGACGAAATCAGAGCCGTTA TGAGCGAGTA chrVII:912761-913137 - 61 9.08e-09 TCTTCTACAA GGGCGGTAAGGAGGTTACCAGAGTCGTCG GTGCCAACCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGNBKGRATTGAHGRTMBMARAGYTGGYS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:117469-119017 2e-13 43_[+3]_28 chrXI:431700-433130 6.3e-13 66_[+3]_5 chrXVI:731413-731980 7.4e-13 48_[-3]_23 chrVIII:104112-105540 4.1e-12 26_[+3]_45 chrVII:648552-649193 8.3e-11 31_[-3]_40 chrIV:525355-527632 6e-10 62_[+3]_9 chrXI:612058-613742 6.5e-10 44_[-3]_27 chrXVI:750456-751323 1.7e-09 69_[-3]_2 chrIV:1301405-1302718 3.3e-09 50_[+3]_21 chrI:75048-75984 7.8e-09 58_[-3]_13 chrVII:912761-913137 9.1e-09 60_[-3]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGNBKGRATTGAHGRTMBMARAGYTGGYS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGNBKGRATTGAHGRTMBMARAGYTGGYS width=29 seqs=11 chrIV:117469-119017 ( 44) TGGCTGAATTGAAGGTCCAAAAGTTGTCC 1 chrXI:431700-433130 ( 67) GGTTTTGATTGACGGTCCAAAAGCTGGTG 1 chrXVI:731413-731980 ( 49) TGCGTGATTTGAAGATCGAAAAGTTGGTC 1 chrVIII:104112-105540 ( 27) GGTTTTGATTGATGGTCCAAAAGCTGGTG 1 chrVII:648552-649193 ( 32) TGCGTGATTTGAAGATCGAGAAATTGGTC 1 chrIV:525355-527632 ( 63) TGACTGAATTGATGTTTTCAGAAATGGTC 1 chrXI:612058-613742 ( 45) TGCTGGAACTGACGAGATCAAAGAGGGCC 1 chrXVI:750456-751323 ( 70) TGCCGCAAAAGACGGACGAAGAACTGGCT 1 chrIV:1301405-1302718 ( 51) TGACATCATTGAAGGTATTAACGCTGGTG 1 chrI:75048-75984 ( 59) TCTGGGGAATGACGAAATCAGAGCCGTTA 1 chrVII:912761-913137 ( 61) GGGCGGTAAGGAGGTTACCAGAGTCGTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGNBKGRATTGAHGRTMBMARAGYTGGYS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 31680 bayes= 11.8466 E= 8.7e-003 -1010 -1010 49 125 -1010 -110 222 -1010 -75 90 -10 -16 -1010 122 49 -16 -174 -1010 90 84 -1010 -110 171 -16 84 -110 49 -174 142 -1010 -1010 -75 -16 -110 -1010 106 -174 -1010 -110 142 -1010 -1010 236 -1010 171 -1010 -1010 -1010 25 90 -110 -75 -1010 -1010 236 -1010 25 -1010 122 -75 -75 -1010 -110 125 25 149 -1010 -174 -1010 90 49 25 84 90 -1010 -174 157 -1010 -110 -1010 106 -1010 90 -1010 157 -110 -1010 -1010 -16 -1010 190 -1010 -75 122 -1010 25 -1010 -10 -110 125 -1010 -1010 236 -1010 -1010 -1010 190 -16 -1010 90 -1010 106 -174 122 90 -174 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGNBKGRATTGAHGRTMBMARAGYTGGYS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 11 E= 8.7e-003 0.000000 0.000000 0.272727 0.727273 0.000000 0.090909 0.909091 0.000000 0.181818 0.363636 0.181818 0.272727 0.000000 0.454545 0.272727 0.272727 0.090909 0.000000 0.363636 0.545455 0.000000 0.090909 0.636364 0.272727 0.545455 0.090909 0.272727 0.090909 0.818182 0.000000 0.000000 0.181818 0.272727 0.090909 0.000000 0.636364 0.090909 0.000000 0.090909 0.818182 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.363636 0.363636 0.090909 0.181818 0.000000 0.000000 1.000000 0.000000 0.363636 0.000000 0.454545 0.181818 0.181818 0.000000 0.090909 0.727273 0.363636 0.545455 0.000000 0.090909 0.000000 0.363636 0.272727 0.363636 0.545455 0.363636 0.000000 0.090909 0.909091 0.000000 0.090909 0.000000 0.636364 0.000000 0.363636 0.000000 0.909091 0.090909 0.000000 0.000000 0.272727 0.000000 0.727273 0.000000 0.181818 0.454545 0.000000 0.363636 0.000000 0.181818 0.090909 0.727273 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.727273 0.272727 0.000000 0.363636 0.000000 0.636364 0.090909 0.454545 0.363636 0.090909 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGNBKGRATTGAHGRTMBMARAGYTGGYS MEME-3 regular expression -------------------------------------------------------------------------------- [TG]G[CT][CGT][TG][GT][AG]A[TA]TGA[AC]G[GA]T[CA][CTG][AC]A[AG]A[GA][CT]TG[GT][TC][CG] -------------------------------------------------------------------------------- Time 534.12 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:718223-719649 7.27e-01 100 chrVII:373824-374224 2.77e-01 100 chrXI:382571-384771 3.09e-01 100 chrIV:215378-216138 2.75e-01 100 chrVIII:235423-235862 5.23e-01 100 chrX:139036-139136 2.89e-01 100 chrXIV:417405-418370 4.30e-02 32_[-1(1.04e-05)]_53 chrXII:918930-923866 6.41e-01 100 chrVIII:443441-443896 6.51e-02 22_[-1(2.85e-05)]_63 chrXII:829053-829714 9.32e-01 100 chrXV:502916-504220 5.59e-02 100 chrXVI:108426-114719 9.21e-03 44_[-2(4.65e-06)]_45 chrXIII:159120-160343 5.71e-02 67_[-1(3.39e-05)]_18 chrXVI:653940-655256 6.10e-02 1_[-1(3.71e-05)]_84 chrVIII:147470-148875 2.78e-01 100 chrII:413638-415446 1.16e-01 100 chrXI:522722-523328 7.21e-01 100 chrXV:841373-843051 2.39e-01 100 chrXV:320746-321550 5.78e-01 100 chrXIII:752759-754427 1.69e-02 31_[+2(5.29e-06)]_58 chrVII:912761-913137 1.11e-05 60_[-3(9.08e-09)]_11 chrIX:210532-211158 1.92e-01 100 chrIV:322081-323804 9.02e-02 100 chrVIII:286960-288391 4.54e-01 100 chrX:55995-56095 1.84e-01 100 chrXIV:108340-109502 7.78e-01 100 chrXIV:492353-492774 8.21e-01 100 chrXII:636486-640415 6.07e-01 100 chrIV:1449656-1451031 1.94e-01 100 chrVI:222723-223986 9.45e-01 100 chrXII:1017579-1019139 6.86e-01 100 chrXI:558447-559622 1.34e-01 100 chrV:306129-307636 7.98e-01 100 chrXVI:447418-448383 3.74e-02 21_[-3(3.10e-05)]_50 chrVII:805896-807948 2.53e-01 100 chrXIV:242481-243285 4.53e-01 100 chrXII:827046-827850 2.97e-01 100 chrXII:261004-262790 5.88e-01 100 chrIX:265674-266299 5.44e-01 100 chrXV:908378-909274 5.90e-01 100 chrV:83108-83761 5.86e-01 100 chrIII:64572-64911 1.69e-02 30_[-1(8.32e-06)]_55 chrII:611787-614918 2.80e-02 100 chrIV:552172-552976 9.30e-01 100 chrX:519595-519695 6.94e-02 83_[-2(7.82e-05)]_6 chrXII:1028654-1030425 2.16e-03 84_[+1(8.30e-07)]_1 chrXV:30976-33922 4.19e-01 100 chrIV:626455-628419 7.91e-01 100 chrXIII:557111-558456 2.03e-01 100 chrXIII:235082-235886 1.65e-03 19_[+1(6.04e-07)]_66 chrIII:240403-241379 1.28e-01 100 chrX:647533-647633 2.59e-03 37_[+1(8.32e-06)]_48 chrX:73519-73619 9.01e-02 56_[+3(8.82e-05)]_15 chrXII:844583-845708 9.22e-01 100 chrXVI:875535-876391 9.85e-06 54_[+1(1.96e-09)]_31 chrXIV:505457-507265 9.12e-01 100 chrXIII:878539-880318 2.16e-01 100 chrVII:614143-615623 1.72e-01 100 chrIX:190662-191875 6.02e-01 100 chrVII:96279-97403 3.41e-06 42_[+1(8.77e-08)]_10_[+2(9.16e-06)]_\ 22 chrXIII:701593-703734 5.57e-01 100 chrVII:431810-432614 9.01e-01 100 chrXIII:671706-674865 1.53e-02 18_[-3(6.78e-05)]_53 chrXI:100229-107355 8.36e-01 100 chrIX:266817-267667 8.38e-03 52_[-1(1.30e-05)]_33 chrI:65071-67996 6.41e-01 100 chrVII:912459-912903 1.42e-03 9_[-2(4.20e-06)]_80 chrXIII:272728-273090 1.21e-02 67_[+2(1.34e-05)]_22 chrII:680178-682149 1.89e-01 100 chrXV:833493-834505 5.85e-02 100 chrXV:680222-680997 6.46e-03 85_[-1(1.33e-06)] chrIV:47338-47676 9.94e-01 100 chrIV:229655-230990 6.36e-01 100 chrXIV:493444-495203 9.31e-01 100 chrXIV:172260-174856 2.09e-01 100 chrII:393001-398116 3.76e-01 100 chrII:373349-375919 3.63e-01 100 chrXI:42325-43055 7.32e-01 100 chrXV:904777-906478 3.84e-03 62_[+1(3.55e-06)]_23 chrXV:418644-419045 3.71e-01 100 chrXVI:451187-453330 7.84e-01 100 chrIV:1059869-1061750 2.49e-01 100 chrVII:970255-973867 9.06e-01 100 chrVII:798322-800493 3.60e-01 100 chrVII:20951-22495 5.82e-01 100 chrVII:130834-131289 4.83e-01 100 chrX:214009-214109 3.13e-05 22_[-1(1.73e-08)]_63 chrIV:50709-51125 5.77e-01 100 chrXV:619513-624842 6.13e-04 57_[-1(1.64e-07)]_28 chrXIV:654206-661797 3.24e-01 100 chrXI:325909-327792 2.98e-02 20_[+2(2.56e-05)]_69 chrV:163290-164185 9.61e-02 13_[+1(6.06e-05)]_72 chrXV:684990-685397 1.49e-01 100 chrXV:523023-523983 8.73e-02 4_[-2(5.92e-05)]_85 chrV:510404-512544 3.19e-01 100 chrXV:416862-417666 2.88e-01 100 chrXVI:401059-402304 7.62e-01 100 chrXVI:897822-898911 2.73e-02 81_[+2(1.23e-05)]_8 chrIX:156912-157309 4.71e-01 100 chrXII:1002103-1003125 3.63e-01 100 chrXVI:153743-154616 8.13e-01 100 chrVII:959837-961766 3.82e-02 23_[+1(1.94e-05)]_62 chrIX:316562-318389 5.78e-02 100 chrVII:801216-801817 6.45e-02 100 chrXV:718865-719950 4.19e-01 100 chrXI:280924-282168 1.23e-04 13_[+2(5.25e-05)]_47_[-1(1.33e-06)]_\ 14 chrIV:232728-233821 5.47e-01 100 chrXIII:759606-763301 8.92e-01 100 chrVII:56353-59041 7.33e-02 100 chrIV:769509-770215 5.82e-06 51_[+1(1.55e-06)]_23_[+2(7.16e-06)] chrXVI:100616-101742 9.06e-01 100 chrXII:402186-402963 8.85e-01 100 chrXIII:368118-369461 3.12e-02 61_[-1(1.76e-05)]_24 chrXII:328211-328649 4.06e-01 100 chrVII:516500-521332 2.46e-01 100 chrXI:554121-554529 4.23e-01 100 chrXIII:222238-224043 1.21e-02 100 chrIV:1241300-1241657 1.66e-03 16_[+1(8.32e-06)]_69 chrII:304339-305856 1.41e-01 100 chrV:396560-398206 3.48e-01 100 chrXVI:249825-250140 2.74e-03 21_[+1(3.71e-05)]_24_[-3(6.02e-05)]_\ 11 chrX:211888-211988 5.90e-01 100 chrIII:137480-139480 3.75e-04 16_[-2(1.72e-05)]_61_[-2(1.21e-06)]_\ 1 chrXV:109914-111096 2.12e-04 10_[+1(2.60e-05)]_1_[-2(2.75e-05)]_\ 63 chrII:556403-558606 8.74e-01 100 chrXIV:166718-168043 5.25e-01 100 chrII:234493-236148 1.40e-01 100 chrI:75048-75984 1.87e-05 58_[-3(7.76e-09)]_13 chrX:464353-464453 5.74e-01 100 chrXVI:471498-471997 5.55e-03 37_[+1(1.17e-05)]_48 chrVIII:553927-554888 5.92e-01 100 chrIII:220877-223044 6.57e-01 100 chrXV:444417-446386 2.80e-01 100 chrX:153318-153418 8.04e-02 100 chrVIII:109813-110617 3.95e-01 100 chrIV:915206-916607 8.66e-02 75_[-2(6.60e-05)]_14 chrV:266096-268373 2.16e-01 100 chrXII:711974-713108 4.83e-01 100 chrVI:52789-54995 4.52e-03 70_[+2(5.29e-06)]_19 chrV:281930-284036 9.39e-01 100 chrXIII:115332-118935 8.23e-01 100 chrIV:200723-201808 9.88e-04 12_[-2(1.47e-06)]_77 chrIV:205018-210688 7.62e-02 100 chrV:138551-140634 8.49e-01 100 chrVII:473981-474380 6.63e-01 100 chrXII:125419-127371 7.19e-01 100 chrVII:647873-648689 6.32e-01 100 chrVIII:290544-292588 1.80e-02 72_[+1(3.71e-05)]_13 chrIII:57187-58901 1.38e-01 100 chrIV:170447-170803 1.03e-01 100 chrXIV:530709-531599 6.97e-01 100 chrIV:392424-392928 2.14e-01 100 chrXII:897913-899889 8.59e-01 100 chrIV:468219-468771 4.19e-01 100 chrV:414620-415588 4.33e-03 9_[+1(5.87e-06)]_76 chrII:777295-778099 9.42e-02 15_[-1(8.19e-05)]_70 chrXIV:707883-708660 4.38e-01 100 chrIV:491274-492788 2.64e-01 100 chrXIII:294402-294770 8.34e-01 100 chrXV:135736-137075 5.94e-01 100 chrXVI:404671-406490 1.83e-02 25_[+1(8.32e-06)]_60 chrVII:227211-228532 3.99e-01 100 chrXV:797154-798940 1.17e-01 100 chrIX:25769-27136 7.38e-01 100 chrVIII:282088-283241 1.26e-02 100 chrV:74184-74988 1.07e-01 100 chrXI:612058-613742 2.78e-06 44_[-3(6.47e-10)]_27 chrVIII:75216-76463 1.11e-01 72_[-1(4.40e-05)]_13 chrXII:231825-234426 4.45e-01 100 chrIV:129625-130789 4.24e-01 100 chrXI:336490-337703 3.08e-02 2_[+2(9.92e-06)]_87 chrVIII:34231-36318 3.69e-03 54_[-1(8.32e-06)]_31 chrXIV:508259-509268 8.44e-01 100 chrIII:162020-163488 2.63e-01 100 chrXIV:243021-243396 7.28e-01 100 chrIII:191327-192291 9.55e-01 100 chrX:172613-172713 3.69e-01 100 chrXV:866867-868337 4.33e-01 100 chrVII:146197-146978 9.32e-01 100 chrII:118158-119122 3.28e-01 100 chrV:339651-342125 6.22e-01 100 chrXII:350424-351258 7.85e-03 67_[-1(1.55e-06)]_18 chrXIV:65624-66684 1.75e-02 40_[-3(5.61e-05)]_31 chrXV:909170-911717 3.89e-01 100 chrXIII:551743-553324 1.92e-01 100 chrXV:91614-94638 7.82e-01 100 chrXVI:794759-796286 2.78e-01 100 chrX:123721-123821 7.75e-03 16_[-1(3.11e-05)]_69 chrVIII:451003-453219 7.43e-02 100 chrXV:414102-414479 1.12e-01 100 chrVIII:381255-382984 2.81e-01 100 chrXIV:229376-231115 1.22e-01 100 chrXII:1026829-1027304 8.83e-01 100 chrVI:224198-225465 4.03e-01 100 chrIII:23627-24306 4.29e-01 100 chrV:298769-302162 7.25e-01 100 chrXVI:121980-125815 7.47e-01 100 chrXVI:822601-824406 1.28e-01 5_[-2(9.15e-05)]_84 chrII:477340-477938 7.78e-01 100 chrXIII:732314-733640 5.35e-01 100 chrXV:630815-631619 8.62e-02 100 chrVII:87945-88556 2.26e-03 17_[+2(1.92e-06)]_72 chrXV:54221-54615 6.25e-01 100 chrIV:1488846-1490130 3.39e-03 36_[-1(1.55e-06)]_49 chrVIII:487299-488259 2.79e-01 100 chrXV:59819-60346 1.31e-01 33_[-1(4.78e-05)]_52 chrIV:183790-184062 2.41e-01 100 chrXVI:692542-695209 8.26e-01 100 chrXV:677746-678976 9.44e-02 100 chrV:77821-79987 2.07e-01 100 chrX:569191-569291 6.21e-01 100 chrXI:617487-618940 8.54e-01 100 chrXV:732602-732979 1.14e-01 100 chrX:140574-140674 3.46e-04 [+1(2.95e-08)]_21_[+1(5.61e-05)]_49 chrIX:98050-99625 2.56e-02 100 chrXI:246175-246704 5.78e-01 100 chrXIII:507271-508061 5.73e-01 100 chrI:222593-223397 2.77e-01 100 chrVII:648552-649193 3.46e-07 31_[-3(8.34e-11)]_40 chrXII:544103-546336 1.04e-01 60_[-2(7.43e-05)]_29 chrXV:738560-739157 9.65e-01 100 chrXIV:289684-292363 4.12e-02 81_[+1(6.06e-05)]_4 chrXV:899807-901363 1.04e-02 64_[+2(5.29e-06)]_25 chrXIII:296846-298975 1.00e-01 19_[-1(9.43e-05)]_66 chrIV:541133-542094 1.38e-01 100 chrIV:1453272-1454309 3.86e-01 100 chrV:166726-167800 5.46e-02 77_[+1(7.60e-05)]_8 chrXII:347938-348935 6.62e-01 100 chrXIV:510788-512466 1.88e-02 100 chrXVI:370987-373424 1.66e-03 42_[-2(9.05e-07)]_47 chrXVI:107575-108277 5.45e-03 62_[+1(3.55e-06)]_23 chrVII:604400-604608 1.23e-01 100 chrXV:722667-725856 2.11e-02 39_[-2(1.72e-05)]_50 chrXIV:442947-444531 9.24e-01 100 chrXII:855639-857733 4.15e-01 100 chrVIII:504041-505781 1.10e-01 45_[-1(6.54e-05)]_40 chrIV:381555-385072 5.91e-01 100 chrIV:45018-46338 9.22e-03 25_[-2(1.34e-05)]_64 chrVII:398314-400800 4.96e-01 100 chrXVI:75202-76476 1.69e-01 100 chrXIII:276977-279903 5.77e-03 69_[+2(2.56e-05)]_20 chrV:335351-336016 2.01e-02 23_[-2(3.67e-05)]_14_[-2(5.29e-06)]_\ 41 chrXI:177935-178541 8.43e-01 100 chrII:143928-145648 9.10e-01 100 chrVII:726760-728333 6.23e-03 27_[+1(5.61e-05)]_58 chrIII:31869-32273 4.80e-01 100 chrVII:1048172-1050199 1.67e-02 60_[+2(1.84e-05)]_29 chrXVI:453663-454599 1.01e-01 100 chrVII:824154-827050 2.78e-01 100 chrX:99265-99365 1.32e-03 6_[+1(4.60e-06)]_79 chrVII:93198-93514 4.77e-01 100 chrXI:397102-397906 1.14e-03 39_[-1(4.60e-06)]_46 chrX:663450-663550 9.53e-01 100 chrX:75734-75834 4.60e-01 100 chrIV:913846-915029 1.44e-01 100 chrXVI:802728-803331 3.43e-01 100 chrXII:242015-243813 7.58e-03 1_[-2(7.82e-05)]_88 chrVIII:495590-496538 1.05e-02 57_[+1(9.34e-06)]_28 chrIV:1239222-1240345 3.75e-08 [-2(5.25e-07)]_1_[-2(2.13e-05)]_3_\ [+1(4.15e-08)]_59 chrVIII:225235-226975 5.54e-03 71_[+2(8.18e-06)]_18 chrIV:1245449-1246296 1.98e-01 7_[-1(8.19e-05)]_78 chrXVI:750456-751323 5.40e-06 69_[-3(1.69e-09)]_2 chrXII:500878-501409 3.97e-03 29_[-1(1.04e-05)]_56 chrIV:579198-580914 3.10e-03 21_[-1(1.14e-06)]_64 chrIX:68523-70017 6.88e-01 100 chrIV:1078851-1080196 3.77e-01 100 chrV:481878-482218 6.67e-04 78_[+1(2.90e-07)]_7 chrIV:488777-489215 1.48e-02 100 chrVIII:119474-122047 7.41e-03 12_[+2(6.28e-05)]_77 chrVII:935882-936198 5.96e-01 100 chrXIV:663084-664037 2.53e-02 64_[+1(6.06e-05)]_21 chrXIV:402208-402962 2.16e-02 61_[-2(4.99e-05)]_28 chrX:95546-95646 7.50e-02 100 chrXVI:731413-731980 2.27e-09 48_[-3(7.42e-13)]_23 chrXVI:85579-86209 5.97e-01 100 chrXV:80161-81652 8.16e-01 100 chrXIV:331108-332568 9.67e-02 32_[-1(4.04e-05)]_53 chrXV:84783-85587 2.13e-01 100 chrXV:505538-507179 2.32e-04 6_[-1(1.76e-05)]_17_[-2(1.10e-05)]_\ 51 chrXIII:352790-353345 3.64e-02 9_[+1(5.61e-05)]_76 chrV:423355-425551 9.41e-01 100 chrXIV:665446-667395 1.44e-02 62_[+3(1.01e-05)]_9 chrXV:778129-779648 8.95e-01 100 chrIV:1162391-1164889 2.50e-03 42_[+1(3.71e-05)]_43 chrXI:337548-338956 2.94e-01 100 chrXII:129625-129985 1.17e-03 84_[-1(4.60e-06)]_1 chrXV:732841-733182 6.69e-01 100 chrIV:227887-228691 2.17e-02 40_[-2(4.65e-06)]_49 chrIV:160559-161397 1.19e-01 100 chrVII:438804-440181 2.59e-01 100 chrX:121036-121136 8.44e-01 100 chrV:66699-69122 3.28e-01 100 chrXI:109062-110637 3.39e-01 100 chrXI:610257-610797 2.67e-01 100 chrII:138371-138931 1.22e-01 42_[+2(5.92e-05)]_47 chrXV:960858-967536 6.57e-02 83_[+2(9.53e-05)]_6 chrXI:333835-335197 2.24e-01 100 chrXV:1003770-1005107 8.60e-04 13_[-1(1.64e-07)]_20_[-1(3.11e-05)]_\ 37 chrXII:282610-284139 8.19e-03 22_[+1(1.59e-05)]_63 chrXVI:730834-731531 9.03e-01 100 chrIII:56395-57081 1.79e-01 100 chrXII:498651-499945 4.83e-05 [-1(1.44e-05)]_60_[-2(9.05e-07)]_14 chrX:187669-187769 1.64e-02 26_[-1(2.14e-05)]_59 chrVII:363886-364633 4.06e-01 100 chrXVI:302883-304467 8.02e-01 100 chrVII:307693-308646 1.76e-03 20_[+1(1.59e-05)]_65 chrVI:82294-84545 8.18e-02 100 chrVII:479018-483162 3.14e-01 100 chrXV:913222-913597 1.71e-01 100 chrXIII:18848-20756 5.15e-01 100 chrXII:809626-816228 8.20e-03 78_[+1(6.06e-05)]_7 chrIV:1236227-1238616 2.48e-01 100 chrXII:720319-721560 3.71e-01 100 chrVI:56760-57564 5.35e-01 100 chrV:222997-225144 1.98e-01 100 chrXII:896256-896578 8.01e-01 100 chrVII:915716-916799 8.06e-04 37_[-2(4.67e-05)]_7_[+1(1.94e-05)]_\ 30 chrIV:555288-556802 2.49e-02 100 chrVII:1019534-1021809 2.20e-01 100 chrXII:444928-447557 3.49e-02 29_[+2(7.82e-05)]_60 chrV:205211-207063 7.91e-01 100 chrIV:808385-810516 9.80e-03 100 chrXVI:819450-820517 5.18e-01 100 chrXV:604907-606213 9.72e-02 100 chrXVI:868819-869868 5.70e-03 10_[+2(1.23e-05)]_79 chrXII:546179-547735 8.57e-01 100 chrIV:308457-310319 3.04e-02 100 chrXVI:700312-700904 1.69e-01 100 chrXII:793984-796251 2.21e-01 100 chrVII:849834-850258 3.76e-01 100 chrXV:28583-31036 2.35e-01 100 chrIV:1114435-1115076 4.42e-02 49_[-1(1.04e-05)]_36 chrXVI:480977-482055 1.51e-01 100 chrXI:282638-285055 9.26e-01 100 chrXV:889661-891511 7.93e-01 100 chrXV:308215-308818 7.79e-01 100 chrVII:876395-878272 3.30e-01 100 chrXI:48782-49037 9.41e-02 100 chrXII:506093-507742 1.05e-01 81_[-2(8.74e-05)]_8 chrII:114130-115263 6.65e-01 100 chrXIII:554252-556613 1.54e-02 63_[-1(1.76e-05)]_22 chrX:154555-154655 4.03e-02 100 chrIII:59205-60958 8.54e-01 100 chrVI:43155-44378 1.67e-01 100 chrX:189838-189938 2.44e-02 65_[+1(9.34e-06)]_20 chrXIII:669247-669660 7.35e-01 100 chrXVI:104580-104977 4.19e-01 100 chrXII:515119-517055 4.17e-03 15_[-2(2.29e-06)]_74 chrIX:128046-130140 2.38e-01 100 chrXII:930396-932035 5.21e-01 100 chrXVI:136204-136862 2.85e-01 100 chrII:738987-739453 4.98e-01 100 chrIV:1262138-1262942 7.14e-01 100 chrXV:832043-832978 8.45e-01 100 chrX:156033-156133 7.93e-03 4_[-1(2.60e-05)]_81 chrXIII:859328-860681 2.55e-03 1_[-1(9.34e-06)]_84 chrIV:1301405-1302718 2.03e-06 50_[+3(3.27e-09)]_21 chrVII:640589-642252 3.18e-01 100 chrXIV:588289-588545 3.29e-01 100 chrXII:513512-514983 5.52e-03 5_[+2(6.02e-06)]_84 chrXVI:281936-283482 5.38e-01 100 chrXII:837427-839587 2.97e-03 39_[-1(8.79e-05)]_46 chrVIII:104112-105540 8.51e-08 26_[+3(4.14e-12)]_45 chrII:37234-38674 1.80e-01 100 chrIX:257438-258365 1.34e-01 100 chrIV:1265701-1266681 4.66e-01 100 chrVIII:160301-160910 6.03e-02 59_[-1(5.61e-05)]_26 chrXII:371022-371952 2.36e-01 100 chrXI:208161-209533 9.70e-01 100 chrXIII:162774-164516 3.94e-01 100 chrVII:252419-252804 4.33e-03 13_[+1(5.18e-05)]_54_[+1(8.30e-07)]_\ 3 chrXI:431700-433130 1.73e-08 66_[+3(6.32e-13)]_5 chrVII:698697-699501 5.99e-01 100 chrX:90510-90610 3.54e-01 100 chrIV:339965-341429 1.05e-01 100 chrXIII:890869-891599 3.51e-02 100 chrXIV:376387-376799 7.39e-01 100 chrXIII:549779-551429 3.93e-01 100 chrIV:117469-119017 4.99e-09 43_[+3(2.00e-13)]_28 chrVI:89775-90947 2.01e-01 100 chrXII:1038580-1039679 1.35e-01 100 chrXVI:376776-377534 6.96e-01 100 chrXIII:511070-512254 9.00e-02 76_[+1(9.43e-05)]_9 chrV:235206-237958 6.79e-02 100 chrXVI:350048-352456 4.52e-01 100 chrIX:212632-214737 6.57e-01 100 chrXIV:24167-27258 4.50e-01 100 chrIV:163414-163871 4.47e-01 100 chrXIII:498886-500940 1.64e-01 36_[+1(6.54e-05)]_49 chrVIII:492187-492887 3.52e-01 100 chrXIII:698735-699126 4.34e-01 100 chrIV:1269705-1271244 3.77e-01 100 chrXVI:879759-880461 8.06e-03 45_[+1(7.42e-06)]_40 chrII:712619-713069 9.92e-01 100 chrV:141853-142499 4.29e-02 15_[+1(4.04e-05)]_70 chrX:453180-453280 6.40e-03 54_[+2(1.45e-05)]_19_[+2(5.92e-05)]_\ 5 chrVIII:229989-231130 7.71e-02 100 chrIV:384875-385915 2.47e-01 100 chrVII:846482-848548 2.00e-01 100 chrXI:258968-260113 8.98e-04 1_[-2(6.93e-07)]_7_[-2(8.18e-06)]_\ 70 chrXII:867484-868880 6.95e-04 66_[-2(2.49e-07)]_23 chrXII:368809-370463 7.19e-01 100 chrIV:836612-838131 2.94e-01 100 chrIV:181400-181728 5.39e-01 100 chrXIV:216044-217037 2.95e-01 100 chrIV:766107-766962 8.92e-01 100 chrXIII:161759-162884 6.49e-01 100 chrV:401153-401957 1.81e-01 100 chrXV:1015340-1017943 9.22e-01 100 chrIV:306023-307967 1.19e-01 100 chrVII:610346-612386 1.94e-03 2_[-2(1.75e-06)]_87 chrXII:1003134-1004608 4.95e-01 100 chrXIII:85487-86229 5.28e-01 100 chrXIV:501402-502882 6.57e-01 100 chrXIV:61490-63142 5.69e-02 100 chrII:606079-607586 4.80e-01 100 chrVIII:80131-80697 3.70e-01 100 chrXI:44978-45978 7.08e-02 100 chrXV:838711-839515 6.45e-02 69_[-1(5.61e-05)]_16 chrXV:1011811-1012832 1.06e-01 100 chrXV:795802-796606 4.71e-02 75_[-1(1.44e-05)]_10 chrXVI:310415-311345 8.68e-02 100 chrIV:218102-218877 5.35e-01 100 chrVII:94174-94738 4.11e-07 4_[+2(1.47e-06)]_[+1(1.14e-06)]_70 chrXV:758794-759762 6.79e-01 100 chrXVI:65926-66617 5.59e-01 100 chrIV:525355-527632 1.57e-06 62_[+3(5.97e-10)]_9 chrIII:15354-16797 3.38e-02 100 chrXIII:755375-755808 3.08e-01 100 chrIV:617002-618003 6.93e-05 37_[-1(4.15e-08)]_48 chrVII:544941-546132 5.04e-03 48_[-3(2.13e-05)]_23 chrVII:865975-867213 2.85e-01 100 chrVI:75077-76878 2.17e-04 4_[+3(2.02e-05)]_39_[-1(1.44e-05)]_\ 13 chrVII:147775-149172 3.45e-01 100 chrI:141919-143807 3.41e-01 100 chrX:185493-185593 8.38e-01 100 chrV:85289-86779 5.11e-01 100 chrIV:330802-333459 7.40e-01 100 chrIII:176929-178946 8.61e-01 100 chrXIV:359715-361061 1.56e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************