Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.010626
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.055321
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.066178
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.012107
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background
Finished invoke:
  name: bg  status: 0  time: 0.009389
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 397.777662
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 44.650106
Invoking:
  centrimo -seqlen 336 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.168478
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.488297
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background -primary GSBBNBDTGGYBYAGTGGKTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.283972
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background -primary SGCGYCWSVCTHNYAABSWGRAGRTCVBSG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.284389
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background -primary TTTWACAYCCRTACATY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.30175
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background -primary AASGCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.184151
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background -primary SGGTTCGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.18215
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background -primary CAACTKGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.183385
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background -primary CGCGCTWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.161318
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background -primary ACGKTGCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.186513
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background -primary SAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.198251
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background -primary AWAGCCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.177393
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background -primary GWCTCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.160073
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background -primary GACTSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.162635
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background -primary ACACTAK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.182121
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background -primary CTCTMCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.177896
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background -primary AAGCGWGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml
Finished invoke:
  name: spamo15  status: 0  time: 0.176265
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background --motif GSBBNBDTGGYBYAGTGGKTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.155244
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background --motif SGCGYCWSVCTHNYAABSWGRAGRTCVBSG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.15991
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background --motif TTTWACAYCCRTACATY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.168358
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background --motif AASGCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.056108
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background --motif SGGTTCGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.071306
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background --motif CAACTKGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.071125
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background --motif CGCGCTWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.071243
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background --motif ACGKTGCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.071006
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background --motif SAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.054004
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background --motif AWAGCCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.069841
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background --motif GWCTCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.070957
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background --motif GACTSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.071401
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background --motif ACACTAK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.057243
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background --motif CTCTMCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.07254
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/background --motif AAGCGWGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/AWRI1631--RIM101.fa
Finished invoke:
  name: fimo15  status: 0  time: 0.094121
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--RIM101/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.161988
Done