******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--PHD1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:490987-491444 1.0000 100 chrVII:592588-592914 1.0000 100 chrXIII:653489-653879 1.0000 100 chrVII:700535-701190 1.0000 100 chrXIV:392393-392684 1.0000 100 chrIV:1161524-1161985 1.0000 100 chrXV:976265-976590 1.0000 100 chrI:182563-182953 1.0000 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1.0000 100 chrIV:410225-410583 1.0000 100 chrXII:611638-612125 1.0000 100 chrIV:541421-541811 1.0000 100 chrXV:109593-110047 1.0000 100 chrXVI:303712-303829 1.0000 100 chrXII:86803-87193 1.0000 100 chrX:606302-606402 1.0000 100 chrV:140993-141379 1.0000 100 chrXVI:338762-339072 1.0000 100 chrV:335664-335835 1.0000 100 chrIV:1468847-1469056 1.0000 100 chrXIV:575247-575637 1.0000 100 chrVI:162083-162368 1.0000 100 chrXII:838626-838865 1.0000 100 chrIV:550971-551361 1.0000 100 chrX:293898-293998 1.0000 100 chrV:423126-423437 1.0000 100 chrXV:159667-159909 1.0000 100 chrVII:94335-94725 1.0000 100 chrXIII:163882-164272 1.0000 100 chrXII:924566-924956 1.0000 100 chrIV:992700-992976 1.0000 100 chrV:176969-177253 1.0000 100 chrII:544633-544771 1.0000 100 chrXII:710699-710834 1.0000 100 chrV:68192-68582 1.0000 100 chrXII:728206-728639 1.0000 100 chrXVI:769105-769469 1.0000 100 chrII:624871-625261 1.0000 100 chrVIII:175063-175538 1.0000 100 chrXII:201803-201966 1.0000 100 chrVII:845507-845824 1.0000 100 chrX:664066-664166 1.0000 100 chrX:75397-75497 1.0000 100 chrXVI:302739-302930 1.0000 100 chrVII:779493-779760 1.0000 100 chrXIV:763976-764366 1.0000 100 chrX:415885-415985 1.0000 100 chrXIV:355308-355698 1.0000 100 chrXI:163670-164060 1.0000 100 chrXI:355251-356463 1.0000 100 chrVII:561565-561749 1.0000 100 chrXIII:168676-169004 1.0000 100 chrI:191340-191730 1.0000 100 chrXII:628260-628608 1.0000 100 chrII:405729-406156 1.0000 100 chrIV:722451-722787 1.0000 100 chrVI:210534-210841 1.0000 100 chrVIII:35480-35870 1.0000 100 chrXVI:56049-56425 1.0000 100 chrV:131062-131297 1.0000 100 chrXI:259698-259954 1.0000 100 chrVII:110551-110775 1.0000 100 chrIII:228525-228965 1.0000 100 chrII:167969-168170 1.0000 100 chrIV:1489249-1489361 1.0000 100 chrXII:498563-498823 1.0000 100 chrVII:738989-739294 1.0000 100 chrXI:518846-519245 1.0000 100 chrXIII:408283-408837 1.0000 100 chrXIII:552642-553032 1.0000 100 chrXVI:76369-76695 1.0000 100 chrXIV:632476-632736 1.0000 100 chrXI:326654-326970 1.0000 100 chrXIV:602303-602404 1.0000 100 chrX:541399-541499 1.0000 100 chrIV:217236-217465 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--PHD1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--PHD1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--PHD1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 584 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 58398 N= 584 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.284 C 0.216 G 0.216 T 0.284 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--PHD1/background): A 0.296 C 0.204 G 0.204 T 0.296 ******************************************************************************** ******************************************************************************** MOTIF GKTARSGCGTCNGRCTHNTAAYSNGRAGRT MEME-1 width = 30 sites = 89 llr = 1629 E-value = 3.9e-324 ******************************************************************************** -------------------------------------------------------------------------------- Motif GKTARSGCGTCNGRCTHNTAAYSNGRAGRT MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::1a411:3123:5::33198::3147:5: pos.-specific C :21::4:a:362318:222:23621::::1 probability G a5::359:711263::12:::242641941 matrix T :38:2::::6231:2a336::5:32121:8 bits 2.3 * 2.1 * * 1.8 * ** * 1.6 * * ** ** * Relative 1.4 * * ** ** * * Entropy 1.1 * * *** ** * * * (26.4 bits) 0.9 * ** **** * ** ** * * 0.7 * ** **** * ** **** **** 0.5 **** ****** **** ***** ****** 0.2 *********** **** ***** ****** 0.0 ------------------------------ Multilevel GGTAAGGCGTCAGACTATTAATCTGAAGAT consensus T GC AC TCG TAC CGA G G sequence G CG C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTARSGCGTCNGRCTHNTAAYSNGRAGRT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrIII:295337-295719 + 23 5.05e-14 TGGCCAAGTT GGTAAGGCGCCACACTAGTAATGTGGAGAT CATCGGTTCA chrIX:174932-175171 + 47 5.05e-14 TGGCCAAGTT GGTAAGGCGCCACACTAGTAATGTGGAGAT CATCGGTTCA chrVIII:116006-116307 - 27 5.05e-14 TGGCCAAGTT GGTAAGGCGCCACACTAGTAATGTGGAGAT CATCGGTTCA chrIV:434190-434430 - 30 5.05e-14 TGGCCAAGTT GGTAAGGCGCCACACTAGTAATGTGGAGAT CATCGGTTCA chrXIV:104719-104987 + 19 5.05e-14 TGGCCAAGTT GGTAAGGCGCCACACTAGTAATGTGGAGAT CATCGGTTCA chrX:59031-59131 - 16 5.05e-14 TGGCCAAGTT GGTAAGGCGCCACACTAGTAATGTGGAGAT CATCGGTTCA chrII:405729-406156 + 2 7.42e-13 T GGCAACGCGTCTGACTTCTAATCAGAAGAT TATGGGTTCG chrXI:162364-162714 - 24 7.42e-13 GTGGCGTAAT GGCAACGCGTCTGACTTCTAATCAGAAGAT TATGGGTTCG chrV:138526-138853 + 43 7.42e-13 GTGGCGTAAT GGCAACGCGTCTGACTTCTAATCAGAAGAT TATGGGTTCG chrIV:568737-569121 + 19 7.42e-13 GTGGCGTAAT GGCAACGCGTCTGACTTCTAATCAGAAGAT TATGGGTTCG chrX:355230-355330 + 11 7.42e-13 GTGGCGTAAT GGCAACGCGTCTGACTTCTAATCAGAAGAT TATGGGTTCG chrVII:405418-405648 + 3 7.42e-13 AT GGCAACGCGTCTGACTTCTAATCAGAAGAT TATGGGTTCG chrXIII:747823-748109 - 2 7.42e-13 GTGGCGTAAT GGCAACGCGTCTGACTTCTAATCAGAAGAT T chrVII:736178-736494 + 70 7.42e-13 GTGGCGTAAT GGCAACGCGTCTGACTTCTAATCAGAAGAT T chrV:135346-135617 - 20 5.54e-12 TGGCGCAATC GGTAGCGCGTATGACTCTTAATCATAAGGT TAGGGGTTCG chrXVI:581927-582240 + 46 5.54e-12 TGGCGCAATC GGTAGCGCGTATGACTCTTAATCATAAGGT TAGGGGTTCG chrVII:122170-122440 + 31 5.54e-12 TGGCGCAATC GGTAGCGCGTATGACTCTTAATCATAAGGT TAGGGGTTCG chrXIII:480503-480843 - 24 5.54e-12 TGGCGCAATC GGTAGCGCGTATGACTCTTAATCATAAGGT TAGGGGTTCG chrV:435671-435950 - 18 5.54e-12 TGGCGCAATC GGTAGCGCGTATGACTCTTAATCATAAGGT TAGGGGTTCG chrIV:1201582-1201958 + 47 5.54e-12 TGGCGCAATC GGTAGCGCGTATGACTCTTAATCATAAGGT TAGGGGTTCG chrVII:185614-185898 - 34 5.54e-12 TGGCGCAATC GGTAGCGCGTATGACTCTTAATCATAAGGT TAGGGGTTCG chrXI:46665-46939 - 9 6.55e-12 TTGGCCAAGT GGTAAGGCATCGCACTCGTAATGCGGGGAT CGTGGGTT chrXIV:632476-632736 + 61 6.37e-11 GGCCAAGTTG GTTAAGGCGTGCGACTGTTAATCGCAAGAT CGTGAGTTCA chrXIV:102576-102897 + 48 6.37e-11 GGCCAAGTTG GTTAAGGCGTGCGACTGTTAATCGCAAGAT CGTGAGTTCA chrVI:137377-137675 - 36 6.37e-11 GGCCAAGTTG GTTAAGGCGTGCGACTGTTAATCGCAAGAT CGTGAGTTCA chrXVI:810578-810790 + 60 6.37e-11 GGCCAAGTTG GTTAAGGCGTGCGACTGTTAATCGCAAGAT CGTGAGTTCA chrXI:74475-74780 + 65 6.37e-11 GGCCAAGTTG GTTAAGGCGTGCGACTGTTAATCGCAAGAT CGTGAG chrVII:731012-731283 + 58 6.37e-11 GGCCAAGTTG GTTAAGGCGTGCGACTGTTAATCGCAAGAT CGTGAGTTCA chrIII:127577-127857 + 67 6.37e-11 GGCCAAGTTG GTTAAGGCGTGCGACTGTTAATCGCAAGAT CGTG chrXIV:602303-602404 + 27 2.69e-10 GGCCCAGTTG GTTAAGGCACCGTGCTAATAACGCGGGGAT CAGCGGTTCG chrVII:738989-739294 + 49 2.69e-10 GGCCCAGTTG GTTAAGGCACCGTGCTAATAACGCGGGGAT CAGCGGTTCG chrIX:210510-210830 + 63 2.69e-10 GGCCCAGTTG GTTAAGGCACCGTGCTAATAACGCGGGGAT CAGCGGTT chrXVI:880199-880527 - 9 2.69e-10 GGCCCAGTTG GTTAAGGCACCGTGCTAATAACGCGGGGAT CAGCGGTT chrXVI:744140-744477 + 42 2.69e-10 TTAGCTTAGT GGTAGAGCGTTGCACTTGTAATGCAAAGGT CGTTAGTTCA chrVII:1004105-1004373 + 43 2.69e-10 TTAGCTTAGT GGTAGAGCGTTGCACTTGTAATGCAAAGGT CGTTAGTTCA chrV:443132-443406 - 9 2.69e-10 GGCCCAGTTG GTTAAGGCACCGTGCTAATAACGCGGGGAT CAGCGGTT chrV:551191-551491 - 20 2.69e-10 GGCCCAGTTG GTTAAGGCACCGTGCTAATAACGCGGGGAT CAGCGGTTCG chrIV:667876-668202 - 44 2.69e-10 GGCCCAGTTG GTTAAGGCACCGTGCTAATAACGCGGGGAT CAGCGGTTCG chrXVI:819353-819728 + 57 2.69e-10 GGCCCAGTTG GTTAAGGCACCGTGCTAATAACGCGGGGAT CAGCGGTTCG chrVII:661602-661902 + 63 2.69e-10 TTAGCTTAGT GGTAGAGCGTTGCACTTGTAATGCAAAGGT CGTTAGTT chrIX:183352-183668 - 6 2.69e-10 GGCCCAGTTG GTTAAGGCACCGTGCTAATAACGCGGGGAT CAGCG chrX:390954-391054 - 2 3.04e-10 TAGCTCAGTA GGAAGAGCGTCAGTCTCATAATCTGAAGGT C chrIV:1175678-1176004 + 55 3.04e-10 TAGCTCAGTA GGAAGAGCGTCAGTCTCATAATCTGAAGGT CGAGAGTTCG chrXV:976265-976590 + 61 3.04e-10 TAGCTCAGTA GGAAGAGCGTCAGTCTCATAATCTGAAGGT CGAGAGTTCG chrXII:214803-215082 - 17 9.78e-10 TGGCGCAGTT GGTAGCGCGCTTCCCTTGCAAGGAAGAGGT CATCGGTTCG chrV:492255-492555 - 23 1.09e-09 TGGCCCAATG GTCACGGCGTCTGGCTACGAACCAGAAGAT TCCAGGTTCA chrXII:374202-374534 + 54 1.09e-09 TGGCCCAATG GTCACGGCGTCTGGCTACGAACCAGAAGAT TCCAGGTTCA chrIV:619866-620167 - 29 1.09e-09 TGGCCCAATG GTCACGGCGTCTGGCTACGAACCAGAAGAT TCCAGGTTCA chrXVI:338762-339072 - 7 1.87e-09 GTGGCGCAGT GGAAGCGCGCAGGGCTCATAACCCTGATGT CCTCGG chrX:517714-517814 - 21 1.87e-09 GTGGCGCAGT GGAAGCGCGCAGGGCTCATAACCCTGATGT CCTCGGATCG chrXV:710100-710343 + 46 1.87e-09 GTGGCGCAGT GGAAGCGCGCAGGGCTCATAACCCTGATGT CCTCGGATCG chrIII:149788-150071 + 57 1.87e-09 GTGGCGCAGT GGAAGCGCGCAGGGCTCATAACCCTGATGT CCTCGGATCG chrV:288359-288651 - 23 2.31e-09 TGGCCGAGTG GTTAAGGCGACAGACTTGAAATCTGTTGGG CTCTGCCCGC chrII:642910-643221 - 18 6.81e-09 ATGGCGCAGT GGTAGCGCAGCAGATTGCAAATCTGTTGGT CCTTAGTTCG chrXVI:435777-436114 - 24 6.81e-09 ATGGCGCAGT GGTAGCGCAGCAGATTGCAAATCTGTTGGT CCTTAGTTCG chrXVI:775670-775977 - 18 6.81e-09 ATGGCGCAGT GGTAGCGCAGCAGATTGCAAATCTGTTGGT CCTTAGTTCG chrV:176969-177253 + 55 1.29e-08 TAGTGTAACG GCTATCACATCACGCTTTCACCGTGGAGAC CGGGGTTCGA chrXVI:210109-210409 - 8 1.29e-08 TAGTGTAACG GCTATCACATCACGCTTTCACCGTGGAGAC CGGGGTT chrV:487266-487533 - 7 1.29e-08 TAGTGTAACG GCTATCACATCACGCTTTCACCGTGGAGAC CGGGGT chrXI:140828-141235 - 62 1.29e-08 AGTGTAACG GCTATCACATCACGCTTTCACCGTGGAGAC CGGGGTTCGA chrXII:797046-797323 + 61 1.29e-08 TAGTGTAACG GCTATCACATCACGCTTTCACCGTGGAGAC CGGGGTTCGA chrV:354778-355154 + 35 1.29e-08 TAGTGTAACG GCTATCACATCACGCTTTCACCGTGGAGAC CGGGGTTCGA chrVII:541693-542044 + 49 1.29e-08 TAGTGTAACG GCTATCACATCACGCTTTCACCGTGGAGAC CGGGGTTCGA chrIII:82392-82662 - 10 1.29e-08 TAGTGTAACG GCTATCACATCACGCTTTCACCGTGGAGAC CGGGGTTCG chrII:645033-645322 + 57 1.29e-08 TAGTGTAACG GCTATCACATCACGCTTTCACCGTGGAGAC CGGGGTTCGA chrV:469334-469579 + 69 3.83e-08 GGTCTAGTCG GTTATGGCATCTGCTTAACACGCAGAACGT CC chrX:378222-378322 + 50 3.83e-08 GGTCTAGTCG GTTATGGCATCTGCTTAACACGCAGAACGT CCCCAGTTCG chrXIII:420489-420787 - 26 3.83e-08 GGTCTAGTCG GTTATGGCATCTGCTTAACACGCAGAACGT CCCCAGTTCG chrXI:308077-308348 - 8 3.83e-08 GGTCTAGTCG GTTATGGCATCTGCTTAACACGCAGAACGT CCCCAGT chrIV:410225-410583 + 42 4.84e-08 TGGCGTAGTC GGTAGCGCGCTCCCTTAGCATGGGAGAGGT CTCCGGTTCG chrXVI:856748-857067 + 62 4.84e-08 TGGCGTAGTC GGTAGCGCGCTCCCTTAGCATGGGAGAGGT CTCCGGTTC chrVIII:146132-146439 - 33 4.84e-08 TGGCGTAGTC GGTAGCGCGCTCCCTTAGCATGGGAGAGGT CTCCGGTTCG chrXII:656841-657125 - 27 4.84e-08 TGGCGTAGTC GGTAGCGCGCTCCCTTAGCATGGGAGAGGT CTCCGGTTCG chrXIII:168676-169004 + 65 1.09e-07 GAAATCTTGA GATCGGGCGTTCGACTCGCCCCCGGGAGAT ATTTTT chrVI:167331-167636 + 64 1.09e-07 GAAATCTTGA GATCGGGCGTTCGACTCGCCCCCGGGAGAT ATTTTTT chrXIII:259068-259383 - 18 1.26e-07 TGGCCGAGTG GTTAAGGCGAAAGATTAGAAATCTTTTGGG CTTTGCCCGC chrIV:1305480-1305781 + 67 1.26e-07 TGGCCGAGTG GTTAAGGCGAAAGATTAGAAATCTTTTGGG CTTT chrIV:980871-981156 - 46 1.26e-07 TGGCCGAGTG GTTAAGGCGAAAGATTAGAAATCTTTTGGG CTTTGCCCGC chrII:226968-227250 + 33 1.26e-07 TGGCCGAGTG GTTAAGGCGAAAGATTAGAAATCTTTTGGG CTTTGCCCGC chrXVI:769105-769469 - 19 1.89e-07 TAGCTCAGTT GGTAGAGCGTTCGGCTTTTAAGCGCATTTG CTTAAGCAAG chrVII:115363-115672 + 38 1.89e-07 TAGCTCAGTT GGTAGAGCGTTCGGCTTTTAAGCGCATTTG CTTAAGCAAG chrXV:438488-438846 + 43 1.89e-07 TAGCTCAGTT GGTAGAGCGTTCGGCTTTTAAGCGCATTTG CTTAAGCAAG chrIV:359452-359768 + 34 1.89e-07 TAGCTCAGTT GGTAGAGCGTTCGGCTTTTAAGCGCATTTG CTTAAGCAAG chrIV:1075386-1075697 - 7 3.57e-07 TAGTGTAGCG GCTATCACGTTGCCTTCACACGGCAAAGGT CCCGAG chrXV:836701-836899 + 36 3.57e-07 TCATGAAGAC GGAACCGCACGGGCCTATTACCTCGGGGAT AGATCAATTA chrIV:519646-519898 + 39 5.10e-07 GGCCGAGTGG TCTAAGGCGGCAGACTTAAGATCTGTTGGA CGGTTGTCCG chrII:9482-9723 + 49 5.10e-07 GGCCGAGTGG TCTAAGGCGGCAGACTTAAGATCTGTTGGA CGGTTGTCCG chrX:424334-424434 - 19 5.10e-07 GGCCGAGTGG TCTAAGGCGGCAGACTTAAGATCTGTTGGA CGGTTGTCCG chrXIV:726065-726339 - 18 5.10e-07 GGCCGAGTGG TCTAAGGCGGCAGACTTAAGATCTGTTGGA CGGTTGTCCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTARSGCGTCNGRCTHNTAAYSNGRAGRT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:295337-295719 5.1e-14 22_[+1]_48 chrIX:174932-175171 5.1e-14 46_[+1]_24 chrVIII:116006-116307 5.1e-14 26_[-1]_44 chrIV:434190-434430 5.1e-14 29_[-1]_41 chrXIV:104719-104987 5.1e-14 18_[+1]_52 chrX:59031-59131 5.1e-14 15_[-1]_55 chrII:405729-406156 7.4e-13 1_[+1]_69 chrXI:162364-162714 7.4e-13 23_[-1]_47 chrV:138526-138853 7.4e-13 42_[+1]_28 chrIV:568737-569121 7.4e-13 18_[+1]_52 chrX:355230-355330 7.4e-13 10_[+1]_60 chrVII:405418-405648 7.4e-13 2_[+1]_68 chrXIII:747823-748109 7.4e-13 1_[-1]_69 chrVII:736178-736494 7.4e-13 69_[+1]_1 chrV:135346-135617 5.5e-12 19_[-1]_51 chrXVI:581927-582240 5.5e-12 45_[+1]_25 chrVII:122170-122440 5.5e-12 30_[+1]_40 chrXIII:480503-480843 5.5e-12 23_[-1]_47 chrV:435671-435950 5.5e-12 17_[-1]_53 chrIV:1201582-1201958 5.5e-12 46_[+1]_24 chrVII:185614-185898 5.5e-12 33_[-1]_37 chrXI:46665-46939 6.5e-12 8_[-1]_62 chrXIV:632476-632736 6.4e-11 60_[+1]_10 chrXIV:102576-102897 6.4e-11 47_[+1]_23 chrVI:137377-137675 6.4e-11 35_[-1]_35 chrXVI:810578-810790 6.4e-11 59_[+1]_11 chrXI:74475-74780 6.4e-11 64_[+1]_6 chrVII:731012-731283 6.4e-11 57_[+1]_13 chrIII:127577-127857 6.4e-11 66_[+1]_4 chrXIV:602303-602404 2.7e-10 26_[+1]_44 chrVII:738989-739294 2.7e-10 48_[+1]_22 chrIX:210510-210830 2.7e-10 62_[+1]_8 chrXVI:880199-880527 2.7e-10 8_[-1]_62 chrXVI:744140-744477 2.7e-10 41_[+1]_29 chrVII:1004105-1004373 2.7e-10 42_[+1]_28 chrV:443132-443406 2.7e-10 8_[-1]_62 chrV:551191-551491 2.7e-10 19_[-1]_51 chrIV:667876-668202 2.7e-10 43_[-1]_27 chrXVI:819353-819728 2.7e-10 56_[+1]_14 chrVII:661602-661902 2.7e-10 62_[+1]_8 chrIX:183352-183668 2.7e-10 5_[-1]_65 chrX:390954-391054 3e-10 1_[-1]_69 chrIV:1175678-1176004 3e-10 54_[+1]_16 chrXV:976265-976590 3e-10 60_[+1]_10 chrXII:214803-215082 9.8e-10 16_[-1]_54 chrV:492255-492555 1.1e-09 22_[-1]_48 chrXII:374202-374534 1.1e-09 53_[+1]_17 chrIV:619866-620167 1.1e-09 28_[-1]_42 chrXVI:338762-339072 1.9e-09 6_[-1]_64 chrX:517714-517814 1.9e-09 20_[-1]_50 chrXV:710100-710343 1.9e-09 45_[+1]_25 chrIII:149788-150071 1.9e-09 56_[+1]_14 chrV:288359-288651 2.3e-09 22_[-1]_48 chrII:642910-643221 6.8e-09 17_[-1]_53 chrXVI:435777-436114 6.8e-09 23_[-1]_47 chrXVI:775670-775977 6.8e-09 17_[-1]_53 chrV:176969-177253 1.3e-08 54_[+1]_16 chrXVI:210109-210409 1.3e-08 7_[-1]_63 chrV:487266-487533 1.3e-08 6_[-1]_64 chrXI:140828-141235 1.3e-08 61_[-1]_9 chrXII:797046-797323 1.3e-08 60_[+1]_10 chrV:354778-355154 1.3e-08 34_[+1]_36 chrVII:541693-542044 1.3e-08 48_[+1]_22 chrIII:82392-82662 1.3e-08 9_[-1]_61 chrII:645033-645322 1.3e-08 56_[+1]_14 chrV:469334-469579 3.8e-08 68_[+1]_2 chrX:378222-378322 3.8e-08 49_[+1]_21 chrXIII:420489-420787 3.8e-08 25_[-1]_45 chrXI:308077-308348 3.8e-08 7_[-1]_63 chrIV:410225-410583 4.8e-08 41_[+1]_29 chrXVI:856748-857067 4.8e-08 61_[+1]_9 chrVIII:146132-146439 4.8e-08 32_[-1]_38 chrXII:656841-657125 4.8e-08 26_[-1]_44 chrXIII:168676-169004 1.1e-07 64_[+1]_6 chrVI:167331-167636 1.1e-07 63_[+1]_7 chrXIII:259068-259383 1.3e-07 17_[-1]_53 chrIV:1305480-1305781 1.3e-07 66_[+1]_4 chrIV:980871-981156 1.3e-07 45_[-1]_25 chrII:226968-227250 1.3e-07 32_[+1]_38 chrXVI:769105-769469 1.9e-07 18_[-1]_52 chrVII:115363-115672 1.9e-07 37_[+1]_33 chrXV:438488-438846 1.9e-07 42_[+1]_28 chrIV:359452-359768 1.9e-07 33_[+1]_37 chrIV:1075386-1075697 3.6e-07 6_[-1]_64 chrXV:836701-836899 3.6e-07 35_[+1]_35 chrIV:519646-519898 5.1e-07 38_[+1]_32 chrII:9482-9723 5.1e-07 48_[+1]_22 chrX:424334-424434 5.1e-07 18_[-1]_52 chrXIV:726065-726339 5.1e-07 17_[-1]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTARSGCGTCNGRCTHNTAAYSNGRAGRT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GKTARSGCGTCNGRCTHNTAAYSNGRAGRT width=30 seqs=89 chrIII:295337-295719 ( 23) GGTAAGGCGCCACACTAGTAATGTGGAGAT 1 chrIX:174932-175171 ( 47) GGTAAGGCGCCACACTAGTAATGTGGAGAT 1 chrVIII:116006-116307 ( 27) GGTAAGGCGCCACACTAGTAATGTGGAGAT 1 chrIV:434190-434430 ( 30) GGTAAGGCGCCACACTAGTAATGTGGAGAT 1 chrXIV:104719-104987 ( 19) GGTAAGGCGCCACACTAGTAATGTGGAGAT 1 chrX:59031-59131 ( 16) GGTAAGGCGCCACACTAGTAATGTGGAGAT 1 chrII:405729-406156 ( 2) GGCAACGCGTCTGACTTCTAATCAGAAGAT 1 chrXI:162364-162714 ( 24) GGCAACGCGTCTGACTTCTAATCAGAAGAT 1 chrV:138526-138853 ( 43) GGCAACGCGTCTGACTTCTAATCAGAAGAT 1 chrIV:568737-569121 ( 19) GGCAACGCGTCTGACTTCTAATCAGAAGAT 1 chrX:355230-355330 ( 11) GGCAACGCGTCTGACTTCTAATCAGAAGAT 1 chrVII:405418-405648 ( 3) GGCAACGCGTCTGACTTCTAATCAGAAGAT 1 chrXIII:747823-748109 ( 2) GGCAACGCGTCTGACTTCTAATCAGAAGAT 1 chrVII:736178-736494 ( 70) GGCAACGCGTCTGACTTCTAATCAGAAGAT 1 chrV:135346-135617 ( 20) GGTAGCGCGTATGACTCTTAATCATAAGGT 1 chrXVI:581927-582240 ( 46) GGTAGCGCGTATGACTCTTAATCATAAGGT 1 chrVII:122170-122440 ( 31) GGTAGCGCGTATGACTCTTAATCATAAGGT 1 chrXIII:480503-480843 ( 24) GGTAGCGCGTATGACTCTTAATCATAAGGT 1 chrV:435671-435950 ( 18) GGTAGCGCGTATGACTCTTAATCATAAGGT 1 chrIV:1201582-1201958 ( 47) GGTAGCGCGTATGACTCTTAATCATAAGGT 1 chrVII:185614-185898 ( 34) GGTAGCGCGTATGACTCTTAATCATAAGGT 1 chrXI:46665-46939 ( 9) GGTAAGGCATCGCACTCGTAATGCGGGGAT 1 chrXIV:632476-632736 ( 61) GTTAAGGCGTGCGACTGTTAATCGCAAGAT 1 chrXIV:102576-102897 ( 48) GTTAAGGCGTGCGACTGTTAATCGCAAGAT 1 chrVI:137377-137675 ( 36) GTTAAGGCGTGCGACTGTTAATCGCAAGAT 1 chrXVI:810578-810790 ( 60) GTTAAGGCGTGCGACTGTTAATCGCAAGAT 1 chrXI:74475-74780 ( 65) GTTAAGGCGTGCGACTGTTAATCGCAAGAT 1 chrVII:731012-731283 ( 58) GTTAAGGCGTGCGACTGTTAATCGCAAGAT 1 chrIII:127577-127857 ( 67) GTTAAGGCGTGCGACTGTTAATCGCAAGAT 1 chrXIV:602303-602404 ( 27) GTTAAGGCACCGTGCTAATAACGCGGGGAT 1 chrVII:738989-739294 ( 49) GTTAAGGCACCGTGCTAATAACGCGGGGAT 1 chrIX:210510-210830 ( 63) GTTAAGGCACCGTGCTAATAACGCGGGGAT 1 chrXVI:880199-880527 ( 9) GTTAAGGCACCGTGCTAATAACGCGGGGAT 1 chrXVI:744140-744477 ( 42) GGTAGAGCGTTGCACTTGTAATGCAAAGGT 1 chrVII:1004105-1004373 ( 43) GGTAGAGCGTTGCACTTGTAATGCAAAGGT 1 chrV:443132-443406 ( 9) GTTAAGGCACCGTGCTAATAACGCGGGGAT 1 chrV:551191-551491 ( 20) GTTAAGGCACCGTGCTAATAACGCGGGGAT 1 chrIV:667876-668202 ( 44) GTTAAGGCACCGTGCTAATAACGCGGGGAT 1 chrXVI:819353-819728 ( 57) GTTAAGGCACCGTGCTAATAACGCGGGGAT 1 chrVII:661602-661902 ( 63) GGTAGAGCGTTGCACTTGTAATGCAAAGGT 1 chrIX:183352-183668 ( 6) GTTAAGGCACCGTGCTAATAACGCGGGGAT 1 chrX:390954-391054 ( 2) GGAAGAGCGTCAGTCTCATAATCTGAAGGT 1 chrIV:1175678-1176004 ( 55) GGAAGAGCGTCAGTCTCATAATCTGAAGGT 1 chrXV:976265-976590 ( 61) GGAAGAGCGTCAGTCTCATAATCTGAAGGT 1 chrXII:214803-215082 ( 17) GGTAGCGCGCTTCCCTTGCAAGGAAGAGGT 1 chrV:492255-492555 ( 23) GTCACGGCGTCTGGCTACGAACCAGAAGAT 1 chrXII:374202-374534 ( 54) GTCACGGCGTCTGGCTACGAACCAGAAGAT 1 chrIV:619866-620167 ( 29) GTCACGGCGTCTGGCTACGAACCAGAAGAT 1 chrXVI:338762-339072 ( 7) GGAAGCGCGCAGGGCTCATAACCCTGATGT 1 chrX:517714-517814 ( 21) GGAAGCGCGCAGGGCTCATAACCCTGATGT 1 chrXV:710100-710343 ( 46) GGAAGCGCGCAGGGCTCATAACCCTGATGT 1 chrIII:149788-150071 ( 57) GGAAGCGCGCAGGGCTCATAACCCTGATGT 1 chrV:288359-288651 ( 23) GTTAAGGCGACAGACTTGAAATCTGTTGGG 1 chrII:642910-643221 ( 18) GGTAGCGCAGCAGATTGCAAATCTGTTGGT 1 chrXVI:435777-436114 ( 24) GGTAGCGCAGCAGATTGCAAATCTGTTGGT 1 chrXVI:775670-775977 ( 18) GGTAGCGCAGCAGATTGCAAATCTGTTGGT 1 chrV:176969-177253 ( 55) GCTATCACATCACGCTTTCACCGTGGAGAC 1 chrXVI:210109-210409 ( 8) GCTATCACATCACGCTTTCACCGTGGAGAC 1 chrV:487266-487533 ( 7) GCTATCACATCACGCTTTCACCGTGGAGAC 1 chrXI:140828-141235 ( 62) GCTATCACATCACGCTTTCACCGTGGAGAC 1 chrXII:797046-797323 ( 61) GCTATCACATCACGCTTTCACCGTGGAGAC 1 chrV:354778-355154 ( 35) GCTATCACATCACGCTTTCACCGTGGAGAC 1 chrVII:541693-542044 ( 49) GCTATCACATCACGCTTTCACCGTGGAGAC 1 chrIII:82392-82662 ( 10) GCTATCACATCACGCTTTCACCGTGGAGAC 1 chrII:645033-645322 ( 57) GCTATCACATCACGCTTTCACCGTGGAGAC 1 chrV:469334-469579 ( 69) GTTATGGCATCTGCTTAACACGCAGAACGT 1 chrX:378222-378322 ( 50) GTTATGGCATCTGCTTAACACGCAGAACGT 1 chrXIII:420489-420787 ( 26) GTTATGGCATCTGCTTAACACGCAGAACGT 1 chrXI:308077-308348 ( 8) GTTATGGCATCTGCTTAACACGCAGAACGT 1 chrIV:410225-410583 ( 42) GGTAGCGCGCTCCCTTAGCATGGGAGAGGT 1 chrXVI:856748-857067 ( 62) GGTAGCGCGCTCCCTTAGCATGGGAGAGGT 1 chrVIII:146132-146439 ( 33) GGTAGCGCGCTCCCTTAGCATGGGAGAGGT 1 chrXII:656841-657125 ( 27) GGTAGCGCGCTCCCTTAGCATGGGAGAGGT 1 chrXIII:168676-169004 ( 65) GATCGGGCGTTCGACTCGCCCCCGGGAGAT 1 chrVI:167331-167636 ( 64) GATCGGGCGTTCGACTCGCCCCCGGGAGAT 1 chrXIII:259068-259383 ( 18) GTTAAGGCGAAAGATTAGAAATCTTTTGGG 1 chrIV:1305480-1305781 ( 67) GTTAAGGCGAAAGATTAGAAATCTTTTGGG 1 chrIV:980871-981156 ( 46) GTTAAGGCGAAAGATTAGAAATCTTTTGGG 1 chrII:226968-227250 ( 33) GTTAAGGCGAAAGATTAGAAATCTTTTGGG 1 chrXVI:769105-769469 ( 19) GGTAGAGCGTTCGGCTTTTAAGCGCATTTG 1 chrVII:115363-115672 ( 38) GGTAGAGCGTTCGGCTTTTAAGCGCATTTG 1 chrXV:438488-438846 ( 43) GGTAGAGCGTTCGGCTTTTAAGCGCATTTG 1 chrIV:359452-359768 ( 34) GGTAGAGCGTTCGGCTTTTAAGCGCATTTG 1 chrIV:1075386-1075697 ( 7) GCTATCACGTTGCCTTCACACGGCAAAGGT 1 chrXV:836701-836899 ( 36) GGAACCGCACGGGCCTATTACCTCGGGGAT 1 chrIV:519646-519898 ( 39) TCTAAGGCGGCAGACTTAAGATCTGTTGGA 1 chrII:9482-9723 ( 49) TCTAAGGCGGCAGACTTAAGATCTGTTGGA 1 chrX:424334-424434 ( 19) TCTAAGGCGGCAGACTTAAGATCTGTTGGA 1 chrXIV:726065-726339 ( 18) TCTAAGGCGGCAGACTTAAGATCTGTTGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTARSGCGTCNGRCTHNTAAYSNGRAGRT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 41462 bayes= 9.89837 E= 3.9e-324 -1312 -1312 223 -272 -372 -37 131 9 -172 -72 -1312 141 172 -318 -1312 -1312 60 -218 77 -91 -140 107 118 -1312 -140 -1312 212 -1312 -1312 229 -1312 -1312 3 -1312 177 -1312 -240 46 -137 98 -81 149 -118 -81 19 -9 7 -20 -1312 46 160 -155 80 -72 68 -313 -1312 201 -1312 -72 -1312 -1312 -1312 176 23 -1 -86 19 -8 -37 28 9 -113 21 -260 101 166 -318 -218 -1312 137 -9 -1312 -272 -1312 63 -37 83 -1312 157 91 -472 -20 7 -9 19 -155 -72 157 -81 60 -1312 103 -113 123 -1312 -72 -72 -1312 -218 208 -172 80 -1312 110 -272 -272 -101 -101 135 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTARSGCGTCNGRCTHNTAAYSNGRAGRT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 89 E= 3.9e-324 0.000000 0.000000 0.955056 0.044944 0.022472 0.157303 0.505618 0.314607 0.089888 0.123596 0.000000 0.786517 0.977528 0.022472 0.000000 0.000000 0.449438 0.044944 0.348315 0.157303 0.112360 0.426966 0.460674 0.000000 0.112360 0.000000 0.887640 0.000000 0.000000 1.000000 0.000000 0.000000 0.303371 0.000000 0.696629 0.000000 0.056180 0.280899 0.078652 0.584270 0.168539 0.573034 0.089888 0.168539 0.337079 0.191011 0.213483 0.258427 0.000000 0.280899 0.617978 0.101124 0.516854 0.123596 0.325843 0.033708 0.000000 0.820225 0.000000 0.179775 0.000000 0.000000 0.000000 1.000000 0.348315 0.202247 0.112360 0.337079 0.280899 0.157303 0.247191 0.314607 0.134831 0.235955 0.033708 0.595506 0.932584 0.022472 0.044944 0.000000 0.764045 0.191011 0.000000 0.044944 0.000000 0.314607 0.157303 0.528090 0.000000 0.606742 0.382022 0.011236 0.258427 0.213483 0.191011 0.337079 0.101124 0.123596 0.606742 0.168539 0.449438 0.000000 0.415730 0.134831 0.696629 0.000000 0.123596 0.179775 0.000000 0.044944 0.865169 0.089888 0.516854 0.000000 0.438202 0.044944 0.044944 0.101124 0.101124 0.752809 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTARSGCGTCNGRCTHNTAAYSNGRAGRT MEME-1 regular expression -------------------------------------------------------------------------------- G[GT]TA[AG][GC]GC[GA][TC]C[ATG][GC][AG]CT[ATC][TAG][TC]AA[TC][CG][TAC]G[AG]AG[AG]T -------------------------------------------------------------------------------- Time 333.59 secs. ******************************************************************************** ******************************************************************************** MOTIF YMBSGGTTCGAKYCC MEME-2 width = 15 sites = 67 llr = 896 E-value = 6.1e-112 ******************************************************************************** -------------------------------------------------------------------------------- Motif YMBSGGTTCGAKYCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :5112::::2a2::: pos.-specific C 7433::::a::24a7 probability G :1258a:::7:2::: matrix T 3:41::aa:::46:3 bits 2.3 * * * 2.1 * * * 1.8 **** * * 1.6 **** * * Relative 1.4 ***** * ** Entropy 1.1 * ******* ** (19.3 bits) 0.9 * ******* *** 0.7 * ******* *** 0.5 ** ******** *** 0.2 *********** *** 0.0 --------------- Multilevel CATGGGTTCGATTCC consensus TCCCA A GC T sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YMBSGGTTCGAKYCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chrXV:594259-594570 - 1 7.63e-10 AAGCATGAGG CCCGGGTTCGATTCC chrIII:123446-123784 - 23 1.98e-09 TGCGGGAGGT CCCGGGTTCGAGTCC CGGCTCGCCC chrVII:845507-845824 + 79 5.54e-09 ATCGTTGGGC CCCCGGTTCGATTCC GGGCTTG chrVI:180853-181181 - 18 5.54e-09 ATCGTTGGGC CCCCGGTTCGATTCC GGGCTTGCGC chrXVI:860230-860556 + 81 5.54e-09 ATCGTTGGGC CCCCGGTTCGATTCC GGGCT chrX:531693-531793 + 68 5.54e-09 ATCGTTGGGC CCCCGGTTCGATTCC GGGCTTGCGC chrXIV:602303-602404 + 57 1.43e-08 ACGCGGGGAT CAGCGGTTCGATCCC GCTAGAGACC chrVII:738989-739294 + 79 1.43e-08 ACGCGGGGAT CAGCGGTTCGATCCC GCTAGAG chrXII:214803-215082 - 2 1.43e-08 AGGAAGAGGT CATCGGTTCGATTCC G chrV:551191-551491 - 5 1.43e-08 ACGCGGGGAT CAGCGGTTCGATCCC GCTA chrIV:667876-668202 - 29 1.43e-08 ACGCGGGGAT CAGCGGTTCGATCCC GCTAGAGACC chrVII:328442-328866 + 25 1.76e-08 ACCGTGGAGA CCGGGGTTCGACTCC CCGTATCGGA chrXII:818478-818772 + 80 2.77e-08 GTGGCTGTGA TCCGGGTTCGAGTCC CGGGAG chrXII:448420-448872 - 65 2.77e-08 ATCCGGACAA CCCCGGTTCGAATCC GGGTAGGACC chrVII:779493-779760 + 86 3.94e-08 AAGGTGGGGA CACGGGTTCGATTCT chrV:135346-135617 - 5 5.51e-08 ATCATAAGGT TAGGGGTTCGAGCCC CCTA chrXVI:581927-582240 + 76 5.51e-08 ATCATAAGGT TAGGGGTTCGAGCCC CCTACAGGGC chrVII:122170-122440 + 61 5.51e-08 ATCATAAGGT TAGGGGTTCGAGCCC CCTACAGGGC chrXIII:480503-480843 - 9 5.51e-08 ATCATAAGGT TAGGGGTTCGAGCCC CCTACAGG chrV:435671-435950 - 3 5.51e-08 ATCATAAGGT TAGGGGTTCGAGCCC CC chrIV:1201582-1201958 + 77 5.51e-08 ATCATAAGGT TAGGGGTTCGAGCCC CCTACAGGG chrVII:185614-185898 - 19 5.51e-08 ATCATAAGGT TAGGGGTTCGAGCCC CCTACAGGGC chrII:405729-406156 + 32 7.93e-08 ATCAGAAGAT TATGGGTTCGACCCC CATCGTGAGT chrXI:162364-162714 - 9 7.93e-08 ATCAGAAGAT TATGGGTTCGACCCC CATCGTGA chrX:374298-374398 - 66 7.93e-08 ATCAGAAGAT TATGGGTTCGACCCC CATCGTGAGT chrV:138526-138853 + 73 7.93e-08 ATCAGAAGAT TATGGGTTCGACCCC CATCGTGAGT chrIV:568737-569121 + 49 7.93e-08 ATCAGAAGAT TATGGGTTCGACCCC CATCGTGAGT chrX:355230-355330 + 41 7.93e-08 ATCAGAAGAT TATGGGTTCGACCCC CATCGTGAGT chrVII:405418-405648 + 33 7.93e-08 ATCAGAAGAT TATGGGTTCGACCCC CATCGTGAGT chrIV:410225-410583 + 72 2.63e-07 TGGGAGAGGT CTCCGGTTCGATTCC GGACTCGTCC chrVIII:146132-146439 - 18 2.63e-07 TGGGAGAGGT CTCCGGTTCGATTCC GGACTCGTCC chrXII:656841-657125 - 12 2.63e-07 TGGGAGAGGT CTCCGGTTCGATTCC GGACTCGTCC chrX:541399-541499 + 78 2.92e-07 GCGTGCCAGA TCGGGGTTCAATTCC CCGTCGCG chrIX:324216-324394 - 59 2.92e-07 GCGTGCCAGA TCGGGGTTCAATTCC CCGTCGCGGA chrXIV:518988-519160 - 86 2.92e-07 . TCGGGGTTCAATTCC CCGTCGCGGA chrVII:110551-110775 - 23 3.64e-07 GCCGATGAAA CCCTGGTTCGATTCT AGGAGATGGC chrIII:295337-295719 + 53 3.64e-07 ATGTGGAGAT CATCGGTTCAAATCC GATTGGAAGC chrIX:174932-175171 + 77 3.64e-07 ATGTGGAGAT CATCGGTTCAAATCC GATTGGAAG chrVIII:116006-116307 - 12 3.64e-07 ATGTGGAGAT CATCGGTTCAAATCC GATTGGAAGC chrIV:434190-434430 - 15 3.64e-07 ATGTGGAGAT CATCGGTTCAAATCC GATTGGAAGC chrXIV:104719-104987 + 49 3.64e-07 ATGTGGAGAT CATCGGTTCAAATCC GATTGGAAGC chrVII:319745-319935 + 37 3.64e-07 GCCGATGAAA CCCTGGTTCGATTCT AGGAGATGGC chrX:59031-59131 - 1 3.64e-07 ATGTGGAGAT CATCGGTTCAAATCC chrVII:561565-561749 - 66 4.06e-07 GCTTTGCCCG CGCAGGTTCGAGTCC TGCAGTTGTC chrIV:980871-981156 - 22 4.06e-07 GCTTTGCCCG CGCAGGTTCGAGTCC TGCAGTTGTC chrII:226968-227250 + 72 4.06e-07 GCTTTGCCCG CGCAGGTTCGAGTCC TGCAGTTGTC chrX:378222-378322 + 80 4.51e-07 CGCAGAACGT CCCCAGTTCGATCCT GGGCGA chrXIII:420489-420787 - 11 4.51e-07 CGCAGAACGT CCCCAGTTCGATCCT GGGCGAAATC chrXII:1012139-1012369 - 28 8.06e-07 GCGTGTGGTG CATGGGTTCTATTCC TCATTAGCGC chrIV:519646-519898 + 79 1.39e-06 CGGTTGTCCG CGCGAGTTCGAACCT CGCATCC chrV:492255-492555 - 8 1.49e-06 ACCAGAAGAT TCCAGGTTCAAGTCC TGGCGGG chrXII:374202-374534 + 84 1.49e-06 ACCAGAAGAT TCCAGGTTCAAGTCC TG chrIV:619866-620167 - 14 1.49e-06 ACCAGAAGAT TCCAGGTTCAAGTCC TGGCGGGGAA chrII:642910-643221 - 3 1.72e-06 ATCTGTTGGT CCTTAGTTCGATCCT GA chrXVI:435777-436114 - 9 1.72e-06 ATCTGTTGGT CCTTAGTTCGATCCT GAGTGCGA chrVII:706993-707193 - 76 1.72e-06 ATCTGTTGGT CCTTAGTTCGATCCT GAGTGCGAGC chrXVI:775670-775977 - 3 1.72e-06 ATCTGTTGGT CCTTAGTTCGATCCT GA chrXIII:504935-505098 + 17 3.30e-06 TCGTAAGATG CAAGAGTTCGAATCT CTTAGCAACC chrXIV:102576-102897 + 78 3.30e-06 ATCGCAAGAT CGTGAGTTCAACCCT CACTGGGG chrXIV:442858-443266 + 82 3.30e-06 TCGTAAGATG CAAGAGTTCGAATCT CTTA chrVI:137377-137675 - 21 3.30e-06 ATCGCAAGAT CGTGAGTTCAACCCT CACTGGGGTC chrIII:90861-91037 + 48 3.30e-06 TCGTAAGATG CAAGAGTTCGAATCT CTTAGCAACC chrV:462506-462896 - 5 4.02e-06 GCCCTCGAAC TCGCGGTTCGACTGC AGCA chrIX:316174-316571 - 24 4.02e-06 TAAAATAATG TATGGGTTCTAGTCT GAAAACTTGG chrIV:1175678-1176004 + 85 4.61e-06 ATCTGAAGGT CGAGAGTTCGAACCT C chrXVI:744140-744477 + 72 5.89e-06 ATGCAAAGGT CGTTAGTTCAATTCT GACAGGTGGC chrVII:1004105-1004373 + 73 5.89e-06 ATGCAAAGGT CGTTAGTTCAATTCT GACAGGTGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YMBSGGTTCGAKYCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:594259-594570 7.6e-10 [-2]_85 chrIII:123446-123784 2e-09 22_[-2]_63 chrVII:845507-845824 5.5e-09 78_[+2]_7 chrVI:180853-181181 5.5e-09 17_[-2]_68 chrXVI:860230-860556 5.5e-09 80_[+2]_5 chrX:531693-531793 5.5e-09 67_[+2]_18 chrXIV:602303-602404 1.4e-08 56_[+2]_29 chrVII:738989-739294 1.4e-08 78_[+2]_7 chrXII:214803-215082 1.4e-08 1_[-2]_84 chrV:551191-551491 1.4e-08 4_[-2]_81 chrIV:667876-668202 1.4e-08 28_[-2]_57 chrVII:328442-328866 1.8e-08 24_[+2]_61 chrXII:818478-818772 2.8e-08 79_[+2]_6 chrXII:448420-448872 2.8e-08 64_[-2]_21 chrVII:779493-779760 3.9e-08 85_[+2] chrV:135346-135617 5.5e-08 4_[-2]_81 chrXVI:581927-582240 5.5e-08 75_[+2]_10 chrVII:122170-122440 5.5e-08 60_[+2]_25 chrXIII:480503-480843 5.5e-08 8_[-2]_77 chrV:435671-435950 5.5e-08 2_[-2]_83 chrIV:1201582-1201958 5.5e-08 76_[+2]_9 chrVII:185614-185898 5.5e-08 18_[-2]_67 chrII:405729-406156 7.9e-08 31_[+2]_54 chrXI:162364-162714 7.9e-08 8_[-2]_77 chrX:374298-374398 7.9e-08 65_[-2]_20 chrV:138526-138853 7.9e-08 72_[+2]_13 chrIV:568737-569121 7.9e-08 48_[+2]_37 chrX:355230-355330 7.9e-08 40_[+2]_45 chrVII:405418-405648 7.9e-08 32_[+2]_53 chrIV:410225-410583 2.6e-07 71_[+2]_14 chrVIII:146132-146439 2.6e-07 17_[-2]_68 chrXII:656841-657125 2.6e-07 11_[-2]_74 chrX:541399-541499 2.9e-07 77_[+2]_8 chrIX:324216-324394 2.9e-07 58_[-2]_27 chrXIV:518988-519160 2.9e-07 85_[-2] chrVII:110551-110775 3.6e-07 22_[-2]_63 chrIII:295337-295719 3.6e-07 52_[+2]_33 chrIX:174932-175171 3.6e-07 76_[+2]_9 chrVIII:116006-116307 3.6e-07 11_[-2]_74 chrIV:434190-434430 3.6e-07 14_[-2]_71 chrXIV:104719-104987 3.6e-07 48_[+2]_37 chrVII:319745-319935 3.6e-07 36_[+2]_49 chrX:59031-59131 3.6e-07 [-2]_85 chrVII:561565-561749 4.1e-07 65_[-2]_20 chrIV:980871-981156 4.1e-07 21_[-2]_64 chrII:226968-227250 4.1e-07 71_[+2]_14 chrX:378222-378322 4.5e-07 79_[+2]_6 chrXIII:420489-420787 4.5e-07 10_[-2]_75 chrXII:1012139-1012369 8.1e-07 27_[-2]_58 chrIV:519646-519898 1.4e-06 78_[+2]_7 chrV:492255-492555 1.5e-06 7_[-2]_78 chrXII:374202-374534 1.5e-06 83_[+2]_2 chrIV:619866-620167 1.5e-06 13_[-2]_72 chrII:642910-643221 1.7e-06 2_[-2]_83 chrXVI:435777-436114 1.7e-06 8_[-2]_77 chrVII:706993-707193 1.7e-06 75_[-2]_10 chrXVI:775670-775977 1.7e-06 2_[-2]_83 chrXIII:504935-505098 3.3e-06 16_[+2]_69 chrXIV:102576-102897 3.3e-06 77_[+2]_8 chrXIV:442858-443266 3.3e-06 81_[+2]_4 chrVI:137377-137675 3.3e-06 20_[-2]_65 chrIII:90861-91037 3.3e-06 47_[+2]_38 chrV:462506-462896 4e-06 4_[-2]_81 chrIX:316174-316571 4e-06 23_[-2]_62 chrIV:1175678-1176004 4.6e-06 84_[+2]_1 chrXVI:744140-744477 5.9e-06 71_[+2]_14 chrVII:1004105-1004373 5.9e-06 72_[+2]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YMBSGGTTCGAKYCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YMBSGGTTCGAKYCC width=15 seqs=67 chrXV:594259-594570 ( 1) CCCGGGTTCGATTCC 1 chrIII:123446-123784 ( 23) CCCGGGTTCGAGTCC 1 chrVII:845507-845824 ( 79) CCCCGGTTCGATTCC 1 chrVI:180853-181181 ( 18) CCCCGGTTCGATTCC 1 chrXVI:860230-860556 ( 81) CCCCGGTTCGATTCC 1 chrX:531693-531793 ( 68) CCCCGGTTCGATTCC 1 chrXIV:602303-602404 ( 57) CAGCGGTTCGATCCC 1 chrVII:738989-739294 ( 79) CAGCGGTTCGATCCC 1 chrXII:214803-215082 ( 2) CATCGGTTCGATTCC 1 chrV:551191-551491 ( 5) CAGCGGTTCGATCCC 1 chrIV:667876-668202 ( 29) CAGCGGTTCGATCCC 1 chrVII:328442-328866 ( 25) CCGGGGTTCGACTCC 1 chrXII:818478-818772 ( 80) TCCGGGTTCGAGTCC 1 chrXII:448420-448872 ( 65) CCCCGGTTCGAATCC 1 chrVII:779493-779760 ( 86) CACGGGTTCGATTCT 1 chrV:135346-135617 ( 5) TAGGGGTTCGAGCCC 1 chrXVI:581927-582240 ( 76) TAGGGGTTCGAGCCC 1 chrVII:122170-122440 ( 61) TAGGGGTTCGAGCCC 1 chrXIII:480503-480843 ( 9) TAGGGGTTCGAGCCC 1 chrV:435671-435950 ( 3) TAGGGGTTCGAGCCC 1 chrIV:1201582-1201958 ( 77) TAGGGGTTCGAGCCC 1 chrVII:185614-185898 ( 19) TAGGGGTTCGAGCCC 1 chrII:405729-406156 ( 32) TATGGGTTCGACCCC 1 chrXI:162364-162714 ( 9) TATGGGTTCGACCCC 1 chrX:374298-374398 ( 66) TATGGGTTCGACCCC 1 chrV:138526-138853 ( 73) TATGGGTTCGACCCC 1 chrIV:568737-569121 ( 49) TATGGGTTCGACCCC 1 chrX:355230-355330 ( 41) TATGGGTTCGACCCC 1 chrVII:405418-405648 ( 33) TATGGGTTCGACCCC 1 chrIV:410225-410583 ( 72) CTCCGGTTCGATTCC 1 chrVIII:146132-146439 ( 18) CTCCGGTTCGATTCC 1 chrXII:656841-657125 ( 12) CTCCGGTTCGATTCC 1 chrX:541399-541499 ( 78) TCGGGGTTCAATTCC 1 chrIX:324216-324394 ( 59) TCGGGGTTCAATTCC 1 chrXIV:518988-519160 ( 86) TCGGGGTTCAATTCC 1 chrVII:110551-110775 ( 23) CCCTGGTTCGATTCT 1 chrIII:295337-295719 ( 53) CATCGGTTCAAATCC 1 chrIX:174932-175171 ( 77) CATCGGTTCAAATCC 1 chrVIII:116006-116307 ( 12) CATCGGTTCAAATCC 1 chrIV:434190-434430 ( 15) CATCGGTTCAAATCC 1 chrXIV:104719-104987 ( 49) CATCGGTTCAAATCC 1 chrVII:319745-319935 ( 37) CCCTGGTTCGATTCT 1 chrX:59031-59131 ( 1) CATCGGTTCAAATCC 1 chrVII:561565-561749 ( 66) CGCAGGTTCGAGTCC 1 chrIV:980871-981156 ( 22) CGCAGGTTCGAGTCC 1 chrII:226968-227250 ( 72) CGCAGGTTCGAGTCC 1 chrX:378222-378322 ( 80) CCCCAGTTCGATCCT 1 chrXIII:420489-420787 ( 11) CCCCAGTTCGATCCT 1 chrXII:1012139-1012369 ( 28) CATGGGTTCTATTCC 1 chrIV:519646-519898 ( 79) CGCGAGTTCGAACCT 1 chrV:492255-492555 ( 8) TCCAGGTTCAAGTCC 1 chrXII:374202-374534 ( 84) TCCAGGTTCAAGTCC 1 chrIV:619866-620167 ( 14) TCCAGGTTCAAGTCC 1 chrII:642910-643221 ( 3) CCTTAGTTCGATCCT 1 chrXVI:435777-436114 ( 9) CCTTAGTTCGATCCT 1 chrVII:706993-707193 ( 76) CCTTAGTTCGATCCT 1 chrXVI:775670-775977 ( 3) CCTTAGTTCGATCCT 1 chrXIII:504935-505098 ( 17) CAAGAGTTCGAATCT 1 chrXIV:102576-102897 ( 78) CGTGAGTTCAACCCT 1 chrXIV:442858-443266 ( 82) CAAGAGTTCGAATCT 1 chrVI:137377-137675 ( 21) CGTGAGTTCAACCCT 1 chrIII:90861-91037 ( 48) CAAGAGTTCGAATCT 1 chrV:462506-462896 ( 5) TCGCGGTTCGACTGC 1 chrIX:316174-316571 ( 24) TATGGGTTCTAGTCT 1 chrIV:1175678-1176004 ( 85) CGAGAGTTCGAACCT 1 chrXVI:744140-744477 ( 72) CGTTAGTTCAATTCT 1 chrVII:1004105-1004373 ( 73) CGTTAGTTCAATTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YMBSGGTTCGAKYCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 50222 bayes= 9.60071 E= 6.1e-112 -1271 169 -1271 21 64 81 -60 -272 -231 75 23 27 -172 69 118 -131 -40 -1271 193 -1271 -1271 -1271 229 -1271 -1271 -1271 -1271 176 -1271 -1271 -1271 176 -1271 229 -1271 -1271 -31 -1271 184 -331 176 -1271 -1271 -1271 -73 -31 23 50 -1271 104 -1271 98 -1271 227 -377 -1271 -1271 181 -1271 -6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YMBSGGTTCGAKYCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 67 E= 6.1e-112 0.000000 0.656716 0.000000 0.343284 0.462687 0.358209 0.134328 0.044776 0.059701 0.343284 0.238806 0.358209 0.089552 0.328358 0.462687 0.119403 0.223881 0.000000 0.776119 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.238806 0.000000 0.731343 0.029851 1.000000 0.000000 0.000000 0.000000 0.179104 0.164179 0.238806 0.417910 0.000000 0.417910 0.000000 0.582090 0.000000 0.985075 0.014925 0.000000 0.000000 0.716418 0.000000 0.283582 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YMBSGGTTCGAKYCC MEME-2 regular expression -------------------------------------------------------------------------------- [CT][AC][TCG][GC][GA]GTTC[GA]A[TG][TC]C[CT] -------------------------------------------------------------------------------- Time 630.82 secs. ******************************************************************************** ******************************************************************************** MOTIF ATAGTKTARTGGTYAGMAYDBDYGSTTKTS MEME-3 width = 30 sites = 22 llr = 571 E-value = 2.7e-097 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATAGTKTARTGGTYAGMAYDBDYGSTTKTS MEME-3 Description -------------------------------------------------------------------------------- Simplified A 6:9::2:a5:::::a:5a:2:31::::::: pos.-specific C ::::::1::::::4::4:5:316351:225 probability G 1:1a:4::5:aa:::7:::444:75::5:5 matrix T 2a::a59::a::a6:32:53323::9a38: bits 2.3 * ** 2.1 * ** 1.8 * ** * ** * * * 1.6 * ** * **** * * * Relative 1.4 **** * **** * * *** * Entropy 1.1 **** ******* ** * **** ** (37.4 bits) 0.9 **** ********** ** **** ** 0.7 **** ********** ** ******** 0.5 ******************* * ******** 0.2 ****************************** 0.0 ------------------------------ Multilevel ATAGTTTAGTGGTTAGAATGGGCGCTTGTC consensus T G A C TC CTCATCG T G sequence ATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAGTKTARTGGTYAGMAYDBDYGSTTKTS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrX:541399-541499 + 38 4.71e-16 AAAATCCGTG ATAGTTTAATGGTCAGAATGGGCGCTTGTC GCGTGCCAGA chrVII:544500-544783 - 22 4.71e-16 TTCTTCCGTG ATAGTTTAATGGTCAGAATGGGCGCTTGTC GCGTGCCAGA chrX:374298-374398 - 9 4.71e-16 TTCTTCCGTG ATAGTTTAATGGTCAGAATGGGCGCTTGTC GCGTGCCA chrXV:571801-572104 + 62 4.71e-16 AAAATCCGTG ATAGTTTAATGGTCAGAATGGGCGCTTGTC GCGTGCCAG chrXII:793771-794083 + 47 4.71e-16 ATAATCCGTG ATAGTTTAATGGTCAGAATGGGCGCTTGTC GCGTGCCAGA chrXI:513261-513547 - 14 4.71e-16 ACGTTCCGTG ATAGTTTAATGGTCAGAATGGGCGCTTGTC GCGTGCCAGA chrXII:427001-427280 + 48 4.71e-16 CTTATCCGTG ATAGTTTAATGGTCAGAATGGGCGCTTGTC GCGTGCCAGA chrX:204595-204695 + 50 4.71e-16 AAAATCCGTG ATAGTTTAATGGTCAGAATGGGCGCTTGTC GCGTGCCAGA chrIV:520836-521119 + 51 3.03e-13 TTAGGGTCCT ATAGTGTAGTGGTTATCACTTTCGGTTTTG ATCCGGACAA chrIV:802657-802938 - 20 3.03e-13 TGTCGGTCCT ATAGTGTAGTGGTTATCACTTTCGGTTTTG ATCCGGACAA chrII:350693-350970 + 52 3.03e-13 AAAGGGTTTT ATAGTGTAGTGGTTATCACTTTCGGTTTTG ATCCGGACAA chrIII:168230-168523 - 11 3.03e-13 TCCTGGTCCT ATAGTGTAGTGGTTATCACTTTCGGTTTTG ATCCGGACAA chrXIII:808171-808459 - 17 3.03e-13 AAAAGGTCCT ATAGTGTAGTGGTTATCACTTTCGGTTCTG ATCCGAACAA chrVII:110551-110775 - 48 3.42e-12 ACCTGCCATC TTAGTATAGTGGTTAGTACACATCGTTGTG GCCGATGAAA chrXIII:362916-363196 + 64 3.42e-12 GTTTGCCATC TTAGTATAGTGGTTAGTACACATCGTTGTG GCCGATG chrV:434497-434735 - 11 3.42e-12 AGTCGCCATC TTAGTATAGTGGTTAGTACACATCGTTGTG GCCGATGAAA chrVIII:62603-62894 + 63 3.42e-12 ATATGCCATC TTAGTATAGTGGTTAGTACACATCGTTGTG GCCGATGA chrIV:1256930-1257220 - 19 2.23e-11 CTTAGCGAAA GTGGTTCAGTGGTTAGAATTCATGCTTCCC AAGCATGGGG chrXV:594259-594570 - 26 2.66e-11 AAACGCGCAA GTGGTTCAGTGGTTAGAATTTATGCTTCCC AAGCATGAGG chrXII:818478-818772 + 40 4.76e-11 TTATGCTCCT CTAGTGCAATGGTTAGCATGCATTCTTCCG GTGGCTGTGA chrVII:779493-779760 + 46 9.75e-11 CCCCGGGCGG TTAGTGTAGTGGTTATCATCCCACCCTTCC AAGGTGGGGA chrIX:370249-370562 + 68 3.76e-10 ATAATCCGAT ATAGTGTAACGGCTATCACATCACGCTTTC ACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAGTKTARTGGTYAGMAYDBDYGSTTKTS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:541399-541499 4.7e-16 37_[+3]_33 chrVII:544500-544783 4.7e-16 21_[-3]_49 chrX:374298-374398 4.7e-16 8_[-3]_62 chrXV:571801-572104 4.7e-16 61_[+3]_9 chrXII:793771-794083 4.7e-16 46_[+3]_24 chrXI:513261-513547 4.7e-16 13_[-3]_57 chrXII:427001-427280 4.7e-16 47_[+3]_23 chrX:204595-204695 4.7e-16 49_[+3]_21 chrIV:520836-521119 3e-13 50_[+3]_20 chrIV:802657-802938 3e-13 19_[-3]_51 chrII:350693-350970 3e-13 51_[+3]_19 chrIII:168230-168523 3e-13 10_[-3]_60 chrXIII:808171-808459 3e-13 16_[-3]_54 chrVII:110551-110775 3.4e-12 47_[-3]_23 chrXIII:362916-363196 3.4e-12 63_[+3]_7 chrV:434497-434735 3.4e-12 10_[-3]_60 chrVIII:62603-62894 3.4e-12 62_[+3]_8 chrIV:1256930-1257220 2.2e-11 18_[-3]_52 chrXV:594259-594570 2.7e-11 25_[-3]_45 chrXII:818478-818772 4.8e-11 39_[+3]_31 chrVII:779493-779760 9.8e-11 45_[+3]_25 chrIX:370249-370562 3.8e-10 67_[+3]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAGTKTARTGGTYAGMAYDBDYGSTTKTS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATAGTKTARTGGTYAGMAYDBDYGSTTKTS width=30 seqs=22 chrX:541399-541499 ( 38) ATAGTTTAATGGTCAGAATGGGCGCTTGTC 1 chrVII:544500-544783 ( 22) ATAGTTTAATGGTCAGAATGGGCGCTTGTC 1 chrX:374298-374398 ( 9) ATAGTTTAATGGTCAGAATGGGCGCTTGTC 1 chrXV:571801-572104 ( 62) ATAGTTTAATGGTCAGAATGGGCGCTTGTC 1 chrXII:793771-794083 ( 47) ATAGTTTAATGGTCAGAATGGGCGCTTGTC 1 chrXI:513261-513547 ( 14) ATAGTTTAATGGTCAGAATGGGCGCTTGTC 1 chrXII:427001-427280 ( 48) ATAGTTTAATGGTCAGAATGGGCGCTTGTC 1 chrX:204595-204695 ( 50) ATAGTTTAATGGTCAGAATGGGCGCTTGTC 1 chrIV:520836-521119 ( 51) ATAGTGTAGTGGTTATCACTTTCGGTTTTG 1 chrIV:802657-802938 ( 20) ATAGTGTAGTGGTTATCACTTTCGGTTTTG 1 chrII:350693-350970 ( 52) ATAGTGTAGTGGTTATCACTTTCGGTTTTG 1 chrIII:168230-168523 ( 11) ATAGTGTAGTGGTTATCACTTTCGGTTTTG 1 chrXIII:808171-808459 ( 17) ATAGTGTAGTGGTTATCACTTTCGGTTCTG 1 chrVII:110551-110775 ( 48) TTAGTATAGTGGTTAGTACACATCGTTGTG 1 chrXIII:362916-363196 ( 64) TTAGTATAGTGGTTAGTACACATCGTTGTG 1 chrV:434497-434735 ( 11) TTAGTATAGTGGTTAGTACACATCGTTGTG 1 chrVIII:62603-62894 ( 63) TTAGTATAGTGGTTAGTACACATCGTTGTG 1 chrIV:1256930-1257220 ( 19) GTGGTTCAGTGGTTAGAATTCATGCTTCCC 1 chrXV:594259-594570 ( 26) GTGGTTCAGTGGTTAGAATTTATGCTTCCC 1 chrXII:818478-818772 ( 40) CTAGTGCAATGGTTAGCATGCATTCTTCCG 1 chrVII:779493-779760 ( 46) TTAGTGTAGTGGTTATCATCCCACCCTTCC 1 chrIX:370249-370562 ( 68) ATAGTGTAACGGCTATCACATCACGCTTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAGTKTARTGGTYAGMAYDBDYGSTTKTS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 41462 bayes= 11.2346 E= 2.7e-097 110 -216 -116 -38 -1110 -1110 -1110 176 162 -1110 -116 -1110 -1110 -1110 229 -1110 -1110 -1110 -1110 176 -70 -1110 83 62 -1110 -58 -1110 154 176 -1110 -1110 -1110 62 -1110 142 -1110 -1110 -216 -1110 169 -1110 -1110 229 -1110 -1110 -1110 229 -1110 -1110 -216 -1110 169 -1110 83 -1110 110 176 -1110 -1110 -1110 -1110 -1110 174 10 62 83 -1110 -70 176 -1110 -1110 -1110 -1110 116 -1110 88 -38 -216 100 10 -1110 64 83 10 10 -116 83 -38 -170 153 -1110 10 -1110 42 174 -270 -1110 142 116 -1110 -1110 -116 -1110 162 -1110 -1110 -1110 176 -1110 -17 142 -12 -1110 -17 -1110 147 -1110 142 116 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAGTKTARTGGTYAGMAYDBDYGSTTKTS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 22 E= 2.7e-097 0.636364 0.045455 0.090909 0.227273 0.000000 0.000000 0.000000 1.000000 0.909091 0.000000 0.090909 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.181818 0.000000 0.363636 0.454545 0.000000 0.136364 0.000000 0.863636 1.000000 0.000000 0.000000 0.000000 0.454545 0.000000 0.545455 0.000000 0.000000 0.045455 0.000000 0.954545 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.045455 0.000000 0.954545 0.000000 0.363636 0.000000 0.636364 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.681818 0.318182 0.454545 0.363636 0.000000 0.181818 1.000000 0.000000 0.000000 0.000000 0.000000 0.454545 0.000000 0.545455 0.227273 0.045455 0.409091 0.318182 0.000000 0.318182 0.363636 0.318182 0.318182 0.090909 0.363636 0.227273 0.090909 0.590909 0.000000 0.318182 0.000000 0.272727 0.681818 0.045455 0.000000 0.545455 0.454545 0.000000 0.000000 0.090909 0.000000 0.909091 0.000000 0.000000 0.000000 1.000000 0.000000 0.181818 0.545455 0.272727 0.000000 0.181818 0.000000 0.818182 0.000000 0.545455 0.454545 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAGTKTARTGGTYAGMAYDBDYGSTTKTS MEME-3 regular expression -------------------------------------------------------------------------------- [AT]TAGT[TG]TA[GA]TGGT[TC]A[GT][AC]A[TC][GTA][GCT][GAT][CT][GC][CG]TT[GT]T[CG] -------------------------------------------------------------------------------- Time 927.27 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:490987-491444 5.53e-01 100 chrVII:592588-592914 3.63e-03 48_[+1(2.43e-06)]_22 chrXIII:653489-653879 3.34e-01 100 chrVII:700535-701190 9.34e-01 100 chrXIV:392393-392684 5.15e-01 100 chrIV:1161524-1161985 5.75e-01 100 chrXV:976265-976590 1.68e-06 60_[+1(3.04e-10)]_10 chrI:182563-182953 5.80e-02 100 chrXII:794437-794755 8.54e-01 100 chrVII:736178-736494 7.13e-09 69_[+1(7.42e-13)]_1 chrIX:183352-183668 2.00e-06 5_[-1(2.69e-10)]_65 chrVII:384713-384949 3.96e-01 100 chrIV:1300979-1301270 7.57e-01 100 chrXVI:678806-679336 7.77e-01 100 chrVIII:126941-127331 6.85e-01 100 chrVII:661602-661902 8.70e-07 62_[+1(2.69e-10)]_8 chrXV:836701-836899 5.69e-04 35_[+1(3.57e-07)]_35 chrX:391825-391925 2.45e-01 100 chrXV:480269-480659 4.36e-01 100 chrXII:704199-704641 8.35e-01 100 chrXIV:87504-87663 7.71e-01 100 chrXV:904118-904641 5.71e-01 100 chrXIII:540281-540872 6.64e-01 100 chrXII:809216-809462 1.70e-01 100 chrXII:720572-720962 9.07e-01 100 chrXII:48762-49044 3.56e-01 100 chrXIV:575943-576333 7.73e-01 100 chrXII:370415-371029 4.09e-01 100 chrXIII:747823-748109 7.13e-09 1_[-1(7.42e-13)]_69 chrXIV:585596-585986 5.25e-01 100 chrXIV:518988-519160 1.04e-03 85_[-2(2.92e-07)] chrXI:308077-308348 3.60e-04 7_[-1(3.83e-08)]_63 chrIV:331150-331540 1.70e-01 100 chrV:77493-77879 7.79e-01 100 chrXV:968032-968436 5.32e-01 100 chrI:198296-198686 6.51e-01 100 chrII:89637-89930 6.45e-01 100 chrVIII:554241-554631 8.89e-01 100 chrX:651310-651410 6.01e-01 100 chrXVI:114480-114690 3.09e-01 100 chrXII:459505-460224 1.41e-01 100 chrIV:76855-77119 1.49e-01 100 chrIII:127577-127857 1.38e-06 66_[+1(6.37e-11)]_4 chrXVI:214571-215166 4.91e-01 100 chrIV:1087113-1087247 6.31e-01 100 chrIV:543565-543955 6.77e-01 100 chrXIV:568280-568380 5.43e-01 100 chrVIII:236166-236556 9.52e-02 100 chrVII:766087-766549 5.85e-01 100 chrXII:646003-646393 6.31e-01 100 chrII:375944-376334 4.50e-01 100 chrX:531693-531793 6.16e-06 67_[+2(5.54e-09)]_18 chrXII:263567-263957 4.39e-02 45_[+3(9.08e-05)]_25 chrXV:1048955-1049345 3.22e-01 100 chrVII:731012-731283 1.42e-06 57_[+1(6.37e-11)]_13 chrVII:959369-959584 2.33e-02 100 chrX:291148-291248 9.15e-01 100 chrIV:359452-359768 9.91e-06 33_[+1(1.89e-07)]_37 chrXII:202183-202573 1.40e-01 100 chrXIII:808171-808459 7.24e-11 16_[-3(3.03e-13)]_54 chrVIII:148980-149218 1.89e-01 100 chrVIII:122171-122561 9.94e-01 100 chrXIII:91834-92062 5.22e-01 100 chrVII:371233-371483 4.07e-01 100 chrVIII:466834-467118 2.20e-01 100 chrXV:678859-679159 5.26e-01 100 chrXV:438488-438846 9.91e-06 42_[+1(1.89e-07)]_28 chrIII:299036-299426 5.72e-03 54_[+1(9.55e-05)]_16 chrXII:1002333-1002723 5.45e-01 100 chrVII:557638-558028 1.76e-01 100 chrXII:84154-84293 3.06e-01 100 chrVII:115363-115672 9.91e-06 37_[+1(1.89e-07)]_33 chrVII:405418-405648 2.32e-13 2_[+1(7.42e-13)]_[+2(7.93e-08)]_53 chrIII:163495-163861 2.36e-01 100 chrXIII:306072-306998 8.49e-01 100 chrII:592926-593247 9.28e-01 100 chrX:73434-73534 3.84e-01 100 chrIII:90861-91037 3.99e-03 47_[+2(3.30e-06)]_38 chrV:42132-42476 2.78e-01 100 chrVIII:115216-115390 3.94e-01 100 chrII:135952-136306 9.15e-01 100 chrIV:1236568-1236958 3.32e-01 100 chrXVI:775670-775977 1.10e-08 2_[-2(1.72e-06)]_[-1(6.81e-09)]_53 chrXII:416627-417017 5.27e-01 100 chrVII:706993-707193 7.16e-03 75_[-2(1.72e-06)]_10 chrXV:671004-671464 4.68e-01 100 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chrX:390954-391054 1.75e-06 1_[-1(3.04e-10)]_69 chrXIII:267999-268229 7.97e-01 100 chrXIII:253365-253578 1.69e-01 100 chrXIV:726065-726339 2.10e-03 17_[-1(5.10e-07)]_53 chrV:462506-462896 1.34e-02 4_[-2(4.02e-06)]_81 chrVI:228175-228565 3.69e-01 100 chrIV:358176-358350 9.83e-01 100 chrII:628447-628613 1.84e-01 100 chrVIII:17063-17439 8.83e-01 100 chrII:702231-702368 3.38e-01 100 chrXIII:287603-287993 6.07e-01 100 chrXIV:63148-63469 7.81e-01 100 chrXIII:480503-480843 1.52e-13 8_[-2(5.51e-08)]_[-1(5.54e-12)]_47 chrXVI:860230-860556 3.00e-06 80_[+2(5.54e-09)]_5 chrIII:11076-11466 2.13e-01 100 chrVI:223975-224165 9.24e-01 100 chrXIII:732070-732356 9.99e-01 100 chrVII:987249-987734 4.60e-01 100 chrVII:400204-400594 3.84e-01 100 chrIX:324216-324394 1.26e-03 58_[-2(2.92e-07)]_27 chrVII:544500-544783 7.59e-12 21_[-3(4.71e-16)]_49 chrIV:1401283-1401568 1.39e-01 12_[-1(6.57e-05)]_58 chrXII:460367-460814 3.73e-01 100 chrIV:386906-387244 8.97e-01 100 chrXII:722803-723193 8.86e-01 100 chrXI:231211-231677 5.18e-02 100 chrVIII:103947-104189 9.60e-01 100 chrXII:108476-108866 2.31e-01 100 chrXIV:586231-586385 9.83e-01 100 chrII:413775-414165 4.64e-01 100 chrXII:797046-797323 1.43e-11 49_[+3(3.76e-10)]_21 chrXIII:362916-363196 4.40e-08 63_[+3(3.42e-12)]_7 chrXI:258441-259020 3.03e-01 100 chrVII:323695-324147 4.26e-01 100 chrXII:214803-215082 9.30e-13 1_[-2(1.43e-08)]_[-1(9.78e-10)]_54 chrXII:796454-796806 5.71e-02 100 chrX:424334-424434 2.86e-03 18_[-1(5.10e-07)]_52 chrIII:107223-107613 7.08e-01 100 chrV:469334-469579 1.32e-04 68_[+1(3.83e-08)]_2 chrXIV:198108-198498 5.48e-01 100 chrXII:568133-568305 4.41e-01 100 chrXIII:504935-505098 3.99e-03 16_[+2(3.30e-06)]_69 chrXV:312620-313010 5.73e-02 100 chrVIII:125952-126271 7.94e-01 100 chrX:607940-608040 5.31e-01 100 chrXIV:662141-662531 3.85e-01 100 chrII:9482-9723 2.86e-03 48_[+1(5.10e-07)]_22 chrIV:357341-357645 3.98e-01 100 chrVIII:553955-554345 9.38e-01 100 chrXI:162364-162714 6.53e-13 8_[-2(7.93e-08)]_[-1(7.42e-13)]_47 chrXVI:880199-880527 2.04e-06 8_[-1(2.69e-10)]_62 chrIX:210510-210830 1.07e-06 62_[+1(2.69e-10)]_8 chrVIII:411447-411601 6.13e-01 100 chrIV:519646-519898 2.71e-06 38_[+1(5.10e-07)]_10_[+2(1.39e-06)]_\ 7 chrX:703292-703392 8.49e-01 100 chrXIII:259068-259383 4.66e-04 17_[-1(1.26e-07)]_53 chrXII:818478-818772 7.92e-13 39_[+3(4.76e-11)]_10_[+2(2.77e-08)]_\ 6 chrXII:897760-898022 8.58e-01 100 chrIX:388727-389117 9.46e-01 100 chrVI:180853-181181 6.16e-06 17_[-2(5.54e-09)]_68 chrIV:117214-117566 9.91e-01 100 chrXIV:303359-303544 3.65e-01 100 chrVI:75339-75729 5.89e-01 100 chrII:393490-393880 3.64e-01 100 chrVII:447-728 6.89e-01 100 chrXI:382206-382447 5.10e-02 100 chrVII:122170-122440 1.52e-13 30_[+1(5.54e-12)]_[+2(5.51e-08)]_25 chrIV:520836-521119 1.47e-09 50_[+3(3.03e-13)]_20 chrXIII:797947-798256 4.80e-01 100 chrVII:287241-287593 1.89e-01 100 chrVII:625191-625543 6.81e-01 100 chrXV:780380-780944 8.23e-01 100 chrVIII:55368-55758 7.08e-01 100 chrXIII:195990-196280 3.89e-02 100 chrXII:65477-65685 3.07e-01 100 chrVIII:452650-452899 6.13e-01 100 chrXVI:581927-582240 1.52e-13 45_[+1(5.54e-12)]_[+2(5.51e-08)]_10 chrXIV:374703-375046 8.79e-01 100 chrXI:140828-141235 1.01e-09 61_[-1(1.29e-08)]_9 chrV:487266-487533 1.96e-11 17_[-3(3.76e-10)]_53 chrVII:254165-254508 2.79e-01 100 chrIV:599712-600246 2.80e-01 100 chrIX:141808-142153 9.46e-01 100 chrV:266143-266533 9.58e-01 100 chrXIII:551382-551774 4.78e-01 100 chrXV:619144-619534 6.50e-01 100 chrXV:87996-88386 2.74e-01 100 chrV:135346-135617 1.52e-13 4_[-2(5.51e-08)]_[-1(5.54e-12)]_51 chrXVI:210109-210409 1.96e-11 18_[-3(3.76e-10)]_52 chrV:424941-425331 4.57e-01 100 chrIV:1080475-1080865 9.84e-01 100 chrXVI:699987-700360 2.74e-01 100 chrII:808529-808919 4.58e-01 100 chrIV:1162792-1163182 5.16e-01 100 chrVII:516325-516588 1.97e-01 100 chrII:378909-379099 8.74e-01 100 chrXIII:431760-432066 2.66e-01 100 chrXVI:453475-453675 4.29e-01 100 chrIV:410225-410583 1.39e-09 41_[+1(4.84e-08)]_[+2(2.63e-07)]_14 chrXII:611638-612125 2.73e-02 41_[-1(5.08e-05)]_29 chrIV:541421-541811 3.47e-01 100 chrXV:109593-110047 2.19e-01 100 chrXVI:303712-303829 9.43e-01 100 chrXII:86803-87193 3.71e-01 100 chrX:606302-606402 5.03e-01 100 chrV:140993-141379 4.57e-01 100 chrXVI:338762-339072 1.72e-05 6_[-1(1.87e-09)]_64 chrV:335664-335835 7.76e-01 100 chrIV:1468847-1469056 7.63e-01 100 chrXIV:575247-575637 4.86e-01 100 chrVI:162083-162368 2.31e-01 100 chrXII:838626-838865 1.04e-01 100 chrIV:550971-551361 5.99e-01 100 chrX:293898-293998 2.01e-01 100 chrV:423126-423437 3.84e-01 100 chrXV:159667-159909 1.20e-01 100 chrVII:94335-94725 7.80e-01 100 chrXIII:163882-164272 7.94e-01 100 chrXII:924566-924956 2.77e-01 100 chrIV:992700-992976 3.42e-01 100 chrV:176969-177253 2.81e-16 43_[+3(3.76e-10)]_27 chrII:544633-544771 9.29e-01 100 chrXII:710699-710834 1.50e-01 100 chrV:68192-68582 3.52e-01 100 chrXII:728206-728639 2.74e-01 100 chrXVI:769105-769469 9.91e-06 18_[-1(1.89e-07)]_52 chrII:624871-625261 3.28e-01 100 chrVIII:175063-175538 4.69e-01 100 chrXII:201803-201966 7.73e-01 100 chrVII:845507-845824 3.00e-06 78_[+2(5.54e-09)]_7 chrX:664066-664166 8.21e-01 100 chrX:75397-75497 8.93e-01 100 chrXVI:302739-302930 9.43e-01 100 chrVII:779493-779760 1.60e-12 45_[+3(9.75e-11)]_10_[+2(3.94e-08)] chrXIV:763976-764366 9.50e-01 100 chrX:415885-415985 4.86e-01 100 chrXIV:355308-355698 9.79e-01 100 chrXI:163670-164060 1.60e-01 100 chrXI:355251-356463 5.11e-01 100 chrVII:561565-561749 5.36e-04 65_[-2(4.06e-07)]_20 chrXIII:168676-169004 3.69e-05 64_[+1(1.09e-07)]_6 chrI:191340-191730 5.97e-01 100 chrXII:628260-628608 6.76e-01 100 chrII:405729-406156 4.38e-13 1_[+1(7.42e-13)]_[+2(7.93e-08)]_54 chrIV:722451-722787 3.41e-01 100 chrVI:210534-210841 1.04e-01 100 chrVIII:35480-35870 8.29e-01 100 chrXVI:56049-56425 1.18e-01 100 chrV:131062-131297 2.72e-01 100 chrXI:259698-259954 9.99e-01 100 chrVII:110551-110775 2.95e-12 22_[-2(3.64e-07)]_10_[-3(3.42e-12)]_\ 23 chrIII:228525-228965 6.45e-01 100 chrII:167969-168170 8.54e-01 100 chrIV:1489249-1489361 8.57e-01 100 chrXII:498563-498823 5.31e-01 100 chrVII:738989-739294 1.43e-11 48_[+1(2.69e-10)]_[+2(1.43e-08)]_7 chrXI:518846-519245 4.70e-01 100 chrXIII:408283-408837 6.98e-01 100 chrXIII:552642-553032 7.02e-02 100 chrXVI:76369-76695 8.84e-01 100 chrXIV:632476-632736 2.51e-07 60_[+1(6.37e-11)]_10 chrXI:326654-326970 3.84e-01 100 chrXIV:602303-602404 1.43e-11 26_[+1(2.69e-10)]_[+2(1.43e-08)]_29 chrX:541399-541499 1.00e-15 37_[+3(4.71e-16)]_10_[+2(2.92e-07)]_\ 8 chrIV:217236-217465 3.90e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************