Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.040211
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.057313
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.076876
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.019724
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.070554
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background
Finished invoke:
  name: bg  status: 0  time: 0.01266
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 849.937777
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 89.989409
Invoking:
  centrimo -seqlen 416 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.203571
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.515616
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background -primary TWGYAAYCRDRAGGTCMBSGGTTCGATYCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.44805
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background -primary NBDTRGYBYAGTKGKTARMGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.62368
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background -primary WACAYCCRTACATY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.484764
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.24142
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background -primary ATAGTKTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.295678
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background -primary GCCTTAAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.253095
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background -primary GGYTATCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.259102
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background -primary AARAAAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.433564
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background -primary CGSTCTCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.243171
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background -primary CCGKGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.309856
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background -primary ATCTB /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.589801
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background -primary AAGCGWGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.22657
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background -primary AASGATG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.269605
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background -primary ACRCCAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.25341
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background -primary ACGAWACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml
Finished invoke:
  name: spamo15  status: 0  time: 0.236707
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background --motif TWGYAAYCRDRAGGTCMBSGGTTCGATYCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.274803
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background --motif NBDTRGYBYAGTKGKTARMGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.266523
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background --motif WACAYCCRTACATY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.23449
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.17159
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background --motif ATAGTKTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.147648
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background --motif GCCTTAAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.173426
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background --motif GGYTATCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.155472
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background --motif AARAAAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.136818
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background --motif CGSTCTCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.151668
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background --motif CCGKGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.153509
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background --motif ATCTB /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.132197
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background --motif AAGCGWGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.160934
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background --motif AASGATG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.14934
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background --motif ACRCCAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.15434
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/background --motif ACGAWACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/AWRI1631--MSS11.fa
Finished invoke:
  name: fimo15  status: 0  time: 0.157602
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MSS11/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.158764
Done