******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MOT3/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:332375-332695 1.0000 100 chrIX:254281-254500 1.0000 100 chrXIII:500308-500478 1.0000 100 chrIX:336259-336559 1.0000 100 chrII:159838-159976 1.0000 100 chrV:85106-85689 1.0000 100 chrIII:127549-127876 1.0000 100 chrXV:29168-29608 1.0000 100 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chrVII:641248-641688 1.0000 100 chrVII:766138-766507 1.0000 100 chrXVI:435795-436123 1.0000 100 chrIX:177623-177976 1.0000 100 chrII:405715-406135 1.0000 100 chrVII:878572-878967 1.0000 100 chrVI:31951-32233 1.0000 100 chrXVI:744133-744470 1.0000 100 chrV:167184-167624 1.0000 100 chrXIII:352142-352435 1.0000 100 chrVIII:134192-134509 1.0000 100 chrXI:430658-431098 1.0000 100 chrVII:278292-278624 1.0000 100 chrII:680326-680999 1.0000 100 chrII:645021-645327 1.0000 100 chrXII:348139-348489 1.0000 100 chrVII:56709-57149 1.0000 100 chrIV:915941-916183 1.0000 100 chrIV:929024-929464 1.0000 100 chrXVI:745524-745964 1.0000 100 chrXII:645906-646122 1.0000 100 chrVII:609413-610127 1.0000 100 chrXIII:551400-551755 1.0000 100 chrIV:83412-83717 1.0000 100 chrVIII:381435-382073 1.0000 100 chrXII:368114-368554 1.0000 100 chrII:226942-227254 1.0000 100 chrXII:951424-951575 1.0000 100 chrII:197345-197635 1.0000 100 chrX:90114-90214 1.0000 100 chrIV:1269030-1269470 1.0000 100 chrXIII:761816-762200 1.0000 100 chrXII:673850-674173 1.0000 100 chrXIV:567982-568269 1.0000 100 chrVIII:411221-411668 1.0000 100 chrV:341375-341815 1.0000 100 chrXII:710663-710852 1.0000 100 chrXIII:253346-253612 1.0000 100 chrX:122031-122131 1.0000 100 chrXI:556050-556490 1.0000 100 chrVII:738958-739322 1.0000 100 chrXI:364828-365212 1.0000 100 chrVIII:382953-383292 1.0000 100 chrXII:952814-952937 1.0000 100 chrI:151500-151701 1.0000 100 chrXII:875226-875599 1.0000 100 chrXII:857178-857332 1.0000 100 chrXI:355371-355737 1.0000 100 chrXVI:377948-378388 1.0000 100 chrXV:217873-218313 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MOT3/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MOT3/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MOT3/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 566 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 56600 N= 566 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.295 C 0.205 G 0.205 T 0.295 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MOT3/background): A 0.304 C 0.196 G 0.196 T 0.304 ******************************************************************************** ******************************************************************************** MOTIF HTAGTCTGRCGCCYTAMCCACTKSGCCAA MEME-1 width = 29 sites = 54 llr = 1109 E-value = 2.8e-214 ******************************************************************************** -------------------------------------------------------------------------------- Motif HTAGTCTGRCGCCYTAMCCACTKSGCCAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 22a3:1223::::::941293:12:::76 pos.-specific C 41::362119:a64:149616323:7832 probability G 12:712265:a:21:11:2:1:35a3::: matrix T 45::6:4221::26a:::::1741::2:2 bits 2.4 ** * 2.1 ** * 1.9 ** * 1.6 * *** * * * * Relative 1.4 ** *** * * *** Entropy 1.2 ** *** * * * *** (29.6 bits) 0.9 ** * **** ** * * * **** 0.7 ** * *********** * **** 0.5 **** * ************* ****** 0.2 ****** ********************** 0.0 ----------------------------- Multilevel CTAGTCTGGCGCCTTAACCACTTGGCCAA consensus TA ACGA A C C A ACGC G CC sequence AG G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HTAGTCTGRCGCCYTAMCCACTKSGCCAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrIV:434188-434445 + 36 5.31e-14 CTCCACATTA CTAGTGTGGCGCCTTACCAACTTGGCCAT AGAAGCTTCT chrII:266224-266588 - 28 5.31e-14 CTCCACATTA CTAGTGTGGCGCCTTACCAACTTGGCCAT AGAAGCAGTT chrVIII:115994-116355 + 21 5.31e-14 CTCCACATTA CTAGTGTGGCGCCTTACCAACTTGGCCAT AGAAGCTCTA chrXV:113668-113958 - 45 5.31e-14 CTCCACATTA CTAGTGTGGCGCCTTACCAACTTGGCCAT AGAAGCTAAA chrXV:353953-354270 + 18 5.31e-14 CTCCACATTA CTAGTGTGGCGCCTTACCAACTTGGCCAT AGAAGCAGTA chrX:58991-59091 + 26 5.31e-14 CTCCACATTA CTAGTGTGGCGCCTTACCAACTTGGCCAT AGAAGCTTCT chrXVI:689401-689790 - 26 3.46e-13 CAACAGATTT CAAGTCTGTCGCCTTAACCACTCGGCCAT AGTGCCCAAA chrIX:248683-249057 - 36 3.46e-13 CAACAGATTT CAAGTCTGTCGCCTTAACCACTCGGCCAT AGTGCCTAAA chrII:226942-227254 - 33 1.79e-12 CAAAAGATTT CTAATCTTTCGCCTTAACCACTCGGCCAA GTTGCCTCGT chrIV:437626-437948 - 41 1.79e-12 CAAAAGATTT CTAATCTTTCGCCTTAACCACTCGGCCAA GTTGCCTTAC chrXII:167869-168197 + 8 1.79e-12 AAGATTT CTAATCTTTCGCCTTAACCACTCGGCCAA GTTGCCATAT chrIV:980876-981180 + 43 1.79e-12 CAAAAGATTT CTAATCTTTCGCCTTAACCACTCGGCCAA GTTGCCTCAA chrXIII:259055-259396 + 30 1.79e-12 CAAAAGATTT CTAATCTTTCGCCTTAACCACTCGGCCAA GTTGCCATAC chrIII:227805-228161 - 15 4.37e-12 TTATTCCATT CGAGTCTCTCGCCTTAACCACTCGGCCAT AGTGCCATTT chrVII:738958-739322 - 39 5.81e-11 CCCCGCGTTA TTAGCACGGTGCCTTAACCAACTGGGCCA AGAGACCTAT chrII:197345-197635 - 61 5.81e-11 CCCCGCGTTA TTAGCACGGTGCCTTAACCAACTGGGCCA AGAGACCTTG chrXIV:569783-570090 + 19 5.81e-11 CCCCGCGTTA TTAGCACGGTGCCTTAACCAACTGGGCCA AGAGACCACT chrV:551169-551496 + 41 5.81e-11 CCCCGCGTTA TTAGCACGGTGCCTTAACCAACTGGGCCA AGAGACCTGT chrXVI:880124-880550 + 47 5.81e-11 CCCCGCGTTA TTAGCACGGTGCCTTAACCAACTGGGCCA AGAGACCATT chrV:443126-443415 + 20 5.81e-11 CCCCGCGTTA TTAGCACGGTGCCTTAACCAACTGGGCCA AGAGACCAAA chrXVI:819340-819768 - 32 5.81e-11 CCCCGCGTTA TTAGCACGGTGCCTTAACCAACTGGGCCA AGAGACCATT chrI:166139-166498 - 5 1.75e-10 CTCTTCCTTG CAAGGGAAGCGCGCTACCAACTGCGCCAT GTGC chrVII:122133-122450 - 34 1.95e-10 CTTATGATTA AGAGTCATACGCGCTACCGATTGCGCCAA CAAGGCTAAT chrV:435667-435963 + 25 1.95e-10 CTTATGATTA AGAGTCATACGCGCTACCGATTGCGCCAA CAAGGCTCTT chrVI:226576-226904 + 36 1.95e-10 CTTATGATTA AGAGTCATACGCGCTACCGATTGCGCCAA CAAGGCATTT chrVII:876237-876544 - 60 1.95e-10 CTTATGATTA AGAGTCATACGCGCTACCGATTGCGCCAA CAAGGCTATT chrXIII:352142-352435 - 48 4.78e-10 AAGTATTTCT TCAGTCTGGCGCTCTCCCAACTGAGCTAA ATCCGCTTAT chrVIII:237773-238094 + 22 4.78e-10 AGTTTTTTCT TCAGTCTGGCGCTCTCCCAACTGAGCTAA ATCCGCTTAC chrVI:157848-158181 + 9 4.78e-10 TTTTTTCT TCAGTCTGGCGCTCTCCCAACTGAGCTAA ATCCGCTTCT chrIV:410208-410578 - 42 5.26e-10 CTCTCCCATG CTAAGGGAGCGCGCTACCGACTACGCCAC ACGCCCAATA chrXVI:856734-857095 - 44 5.26e-10 CTCTCCCATG CTAAGGGAGCGCGCTACCGACTACGCCAC ACGCCCGAAT chrXI:517810-518155 - 62 5.26e-10 CTCTCCCATG CTAAGGGAGCGCGCTACCGACTACGCCAC ACGCCCATAG chrX:197231-197331 + 43 5.26e-10 CTCTCCCATG CTAAGGGAGCGCGCTACCGACTACGCCAC ACGCCCTAAT chrVIII:146130-146451 + 40 5.26e-10 CTCTCCCATG CTAAGGGAGCGCGCTACCGACTACGCCAC ACGCCCTGAT chrX:233766-233866 - 64 6.95e-10 CCTGGTTC GTAGCCAGACGCCGTGACCATTGGGCCAC GAGGAACAAG chrXII:592419-592737 + 56 6.95e-10 TAAATCCACC TAAATCTGACGCCTTAAACCACTCGGCCA AACTCCCATT chrXV:340192-340519 + 32 6.95e-10 CTTCTGGTTC GTAGCCAGACGCCGTGACCATTGGGCCAC GAGGAACAGA chrV:492235-492577 + 34 6.95e-10 CTTCTGGTTC GTAGCCAGACGCCGTGACCATTGGGCCAC GAGGAATAGG chrXI:74447-74800 - 58 7.61e-10 CTTGCGATTA ACAGTCGCACGCCTTAACCAACTTGGCCA TGGAGTCTAA chrVI:137312-137708 + 64 7.61e-10 CTTGCGATTA ACAGTCGCACGCCTTAACCAACTTGGCCA TGGAGTCA chrIII:127549-127876 - 61 7.61e-10 CTTGCGATTA ACAGTCGCACGCCTTAACCAACTTGGCCA TGGAGTCATT chrX:424332-424432 + 24 1.29e-09 CAACAGATCT TAAGTCTGCCGCCTTAGACCACTCGGCCA ACCCTCCATC chrXII:962889-963227 + 12 1.29e-09 CAACAGATCT TAAGTCTGCCGCCTTAGACCACTCGGCCA ACCCTCCGTC chrIV:519633-519910 - 29 1.29e-09 CAACAGATCT TAAGTCTGCCGCCTTAGACCACTCGGCCA ACCCTCCGTA chrXII:875226-875599 - 20 1.53e-09 AATGCGCTTA AAAGCCGAACGCTCTACCAACTGAGCTAA CAAGGATGAG chrIV:359434-359800 - 16 1.53e-09 AATGCGCTTA AAAGCCGAACGCTCTACCAACTGAGCTAA CAAGGATGAG chrXV:438481-438856 - 31 1.53e-09 AATGCGCTTA AAAGCCGAACGCTCTACCAACTGAGCTAA CAAGGATGAG chrI:181001-181383 - 6 2.50e-09 AGATATTTCT TGAATCAGGCGCCTTAGACCGCTCGGCCA AACAA chrVII:857310-857604 + 49 2.50e-09 AGATATTTCT TGAATCAGGCGCCTTAGACCGCTCGGCCA AACAACCACT chrVII:205346-205717 - 47 2.50e-09 AGATATTTCT TGAATCAGGCGCCTTAGACCGCTCGGCCA AACAACCACT chrXII:784217-784546 - 29 6.61e-09 CTGAGGAAAT AGCAGGCATCGCCTTAACCACTCGGCCAC TGGGACGGTT chrIV:884216-884604 - 7 1.98e-08 AATGTTGCTA TAAGCACGAAGCTCTAACCACTGAGCTAC ACGAGC chrIV:1175659-1176047 - 32 4.53e-08 CTTCAGATTA TGAGACTGACGCTCTTCCTACTGAGCTAC TGAAGCTTTG chrXV:976251-976612 - 46 4.53e-08 CTTCAGATTA TGAGACTGACGCTCTTCCTACTGAGCTAC TGAAGCGCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HTAGTCTGRCGCCYTAMCCACTKSGCCAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:434188-434445 5.3e-14 35_[+1]_36 chrII:266224-266588 5.3e-14 27_[-1]_44 chrVIII:115994-116355 5.3e-14 20_[+1]_51 chrXV:113668-113958 5.3e-14 44_[-1]_27 chrXV:353953-354270 5.3e-14 17_[+1]_54 chrX:58991-59091 5.3e-14 25_[+1]_46 chrXVI:689401-689790 3.5e-13 25_[-1]_46 chrIX:248683-249057 3.5e-13 35_[-1]_36 chrII:226942-227254 1.8e-12 32_[-1]_39 chrIV:437626-437948 1.8e-12 40_[-1]_31 chrXII:167869-168197 1.8e-12 7_[+1]_64 chrIV:980876-981180 1.8e-12 42_[+1]_29 chrXIII:259055-259396 1.8e-12 29_[+1]_42 chrIII:227805-228161 4.4e-12 14_[-1]_57 chrVII:738958-739322 5.8e-11 38_[-1]_33 chrII:197345-197635 5.8e-11 60_[-1]_11 chrXIV:569783-570090 5.8e-11 18_[+1]_53 chrV:551169-551496 5.8e-11 40_[+1]_31 chrXVI:880124-880550 5.8e-11 46_[+1]_25 chrV:443126-443415 5.8e-11 19_[+1]_52 chrXVI:819340-819768 5.8e-11 31_[-1]_40 chrI:166139-166498 1.8e-10 4_[-1]_67 chrVII:122133-122450 1.9e-10 33_[-1]_38 chrV:435667-435963 1.9e-10 24_[+1]_47 chrVI:226576-226904 1.9e-10 35_[+1]_36 chrVII:876237-876544 1.9e-10 59_[-1]_12 chrXIII:352142-352435 4.8e-10 47_[-1]_24 chrVIII:237773-238094 4.8e-10 21_[+1]_50 chrVI:157848-158181 4.8e-10 8_[+1]_63 chrIV:410208-410578 5.3e-10 41_[-1]_30 chrXVI:856734-857095 5.3e-10 43_[-1]_28 chrXI:517810-518155 5.3e-10 61_[-1]_10 chrX:197231-197331 5.3e-10 42_[+1]_29 chrVIII:146130-146451 5.3e-10 39_[+1]_32 chrX:233766-233866 6.9e-10 63_[-1]_8 chrXII:592419-592737 6.9e-10 55_[+1]_16 chrXV:340192-340519 6.9e-10 31_[+1]_40 chrV:492235-492577 6.9e-10 33_[+1]_38 chrXI:74447-74800 7.6e-10 57_[-1]_14 chrVI:137312-137708 7.6e-10 63_[+1]_8 chrIII:127549-127876 7.6e-10 60_[-1]_11 chrX:424332-424432 1.3e-09 23_[+1]_48 chrXII:962889-963227 1.3e-09 11_[+1]_60 chrIV:519633-519910 1.3e-09 28_[-1]_43 chrXII:875226-875599 1.5e-09 19_[-1]_52 chrIV:359434-359800 1.5e-09 15_[-1]_56 chrXV:438481-438856 1.5e-09 30_[-1]_41 chrI:181001-181383 2.5e-09 5_[-1]_66 chrVII:857310-857604 2.5e-09 48_[+1]_23 chrVII:205346-205717 2.5e-09 46_[-1]_25 chrXII:784217-784546 6.6e-09 28_[-1]_43 chrIV:884216-884604 2e-08 6_[-1]_65 chrIV:1175659-1176047 4.5e-08 31_[-1]_40 chrXV:976251-976612 4.5e-08 45_[-1]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HTAGTCTGRCGCCYTAMCCACTKSGCCAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF HTAGTCTGRCGCCYTAMCCACTKSGCCAA width=29 seqs=54 chrIV:434188-434445 ( 36) CTAGTGTGGCGCCTTACCAACTTGGCCAT 1 chrII:266224-266588 ( 28) CTAGTGTGGCGCCTTACCAACTTGGCCAT 1 chrVIII:115994-116355 ( 21) CTAGTGTGGCGCCTTACCAACTTGGCCAT 1 chrXV:113668-113958 ( 45) CTAGTGTGGCGCCTTACCAACTTGGCCAT 1 chrXV:353953-354270 ( 18) CTAGTGTGGCGCCTTACCAACTTGGCCAT 1 chrX:58991-59091 ( 26) CTAGTGTGGCGCCTTACCAACTTGGCCAT 1 chrXVI:689401-689790 ( 26) CAAGTCTGTCGCCTTAACCACTCGGCCAT 1 chrIX:248683-249057 ( 36) CAAGTCTGTCGCCTTAACCACTCGGCCAT 1 chrII:226942-227254 ( 33) CTAATCTTTCGCCTTAACCACTCGGCCAA 1 chrIV:437626-437948 ( 41) CTAATCTTTCGCCTTAACCACTCGGCCAA 1 chrXII:167869-168197 ( 8) CTAATCTTTCGCCTTAACCACTCGGCCAA 1 chrIV:980876-981180 ( 43) CTAATCTTTCGCCTTAACCACTCGGCCAA 1 chrXIII:259055-259396 ( 30) CTAATCTTTCGCCTTAACCACTCGGCCAA 1 chrIII:227805-228161 ( 15) CGAGTCTCTCGCCTTAACCACTCGGCCAT 1 chrVII:738958-739322 ( 39) TTAGCACGGTGCCTTAACCAACTGGGCCA 1 chrII:197345-197635 ( 61) TTAGCACGGTGCCTTAACCAACTGGGCCA 1 chrXIV:569783-570090 ( 19) TTAGCACGGTGCCTTAACCAACTGGGCCA 1 chrV:551169-551496 ( 41) TTAGCACGGTGCCTTAACCAACTGGGCCA 1 chrXVI:880124-880550 ( 47) TTAGCACGGTGCCTTAACCAACTGGGCCA 1 chrV:443126-443415 ( 20) TTAGCACGGTGCCTTAACCAACTGGGCCA 1 chrXVI:819340-819768 ( 32) TTAGCACGGTGCCTTAACCAACTGGGCCA 1 chrI:166139-166498 ( 5) CAAGGGAAGCGCGCTACCAACTGCGCCAT 1 chrVII:122133-122450 ( 34) AGAGTCATACGCGCTACCGATTGCGCCAA 1 chrV:435667-435963 ( 25) AGAGTCATACGCGCTACCGATTGCGCCAA 1 chrVI:226576-226904 ( 36) AGAGTCATACGCGCTACCGATTGCGCCAA 1 chrVII:876237-876544 ( 60) AGAGTCATACGCGCTACCGATTGCGCCAA 1 chrXIII:352142-352435 ( 48) TCAGTCTGGCGCTCTCCCAACTGAGCTAA 1 chrVIII:237773-238094 ( 22) TCAGTCTGGCGCTCTCCCAACTGAGCTAA 1 chrVI:157848-158181 ( 9) TCAGTCTGGCGCTCTCCCAACTGAGCTAA 1 chrIV:410208-410578 ( 42) CTAAGGGAGCGCGCTACCGACTACGCCAC 1 chrXVI:856734-857095 ( 44) CTAAGGGAGCGCGCTACCGACTACGCCAC 1 chrXI:517810-518155 ( 62) CTAAGGGAGCGCGCTACCGACTACGCCAC 1 chrX:197231-197331 ( 43) CTAAGGGAGCGCGCTACCGACTACGCCAC 1 chrVIII:146130-146451 ( 40) CTAAGGGAGCGCGCTACCGACTACGCCAC 1 chrX:233766-233866 ( 64) GTAGCCAGACGCCGTGACCATTGGGCCAC 1 chrXII:592419-592737 ( 56) TAAATCTGACGCCTTAAACCACTCGGCCA 1 chrXV:340192-340519 ( 32) GTAGCCAGACGCCGTGACCATTGGGCCAC 1 chrV:492235-492577 ( 34) GTAGCCAGACGCCGTGACCATTGGGCCAC 1 chrXI:74447-74800 ( 58) ACAGTCGCACGCCTTAACCAACTTGGCCA 1 chrVI:137312-137708 ( 64) ACAGTCGCACGCCTTAACCAACTTGGCCA 1 chrIII:127549-127876 ( 61) ACAGTCGCACGCCTTAACCAACTTGGCCA 1 chrX:424332-424432 ( 24) TAAGTCTGCCGCCTTAGACCACTCGGCCA 1 chrXII:962889-963227 ( 12) TAAGTCTGCCGCCTTAGACCACTCGGCCA 1 chrIV:519633-519910 ( 29) TAAGTCTGCCGCCTTAGACCACTCGGCCA 1 chrXII:875226-875599 ( 20) AAAGCCGAACGCTCTACCAACTGAGCTAA 1 chrIV:359434-359800 ( 16) AAAGCCGAACGCTCTACCAACTGAGCTAA 1 chrXV:438481-438856 ( 31) AAAGCCGAACGCTCTACCAACTGAGCTAA 1 chrI:181001-181383 ( 6) TGAATCAGGCGCCTTAGACCGCTCGGCCA 1 chrVII:857310-857604 ( 49) TGAATCAGGCGCCTTAGACCGCTCGGCCA 1 chrVII:205346-205717 ( 47) TGAATCAGGCGCCTTAGACCGCTCGGCCA 1 chrXII:784217-784546 ( 29) AGCAGGCATCGCCTTAACCACTCGGCCAC 1 chrIV:884216-884604 ( 7) TAAGCACGAAGCTCTAACCACTGAGCTAC 1 chrIV:1175659-1176047 ( 32) TGAGACTGACGCTCTTCCTACTGAGCTAC 1 chrXV:976251-976612 ( 46) TGAGACTGACGCTCTTCCTACTGAGCTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HTAGTCTGRCGCCYTAMCCACTKSGCCAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 40752 bayes= 10.753 E= 2.8e-214 -58 92 -182 28 -58 -82 6 66 169 -340 -1240 -1240 -13 -1240 188 -1240 -304 40 -59 92 -104 164 30 -1240 -58 -23 6 49 -72 -140 155 -87 5 -182 124 -87 -403 212 -1240 -123 -1240 -1240 235 -1240 -1240 235 -1240 -1240 -1240 173 -8 -87 -1240 85 -182 96 -1240 -1240 -1240 172 149 -182 -182 -304 55 118 -82 -1240 -123 215 -1240 -1240 -34 150 -23 -304 152 -59 -1240 -1240 -23 150 -182 -123 -1240 69 -1240 117 -172 -23 69 49 -87 69 124 -245 -1240 -1240 235 -1240 -1240 181 69 -1240 -1240 209 -1240 -87 117 69 -1240 -1240 96 18 -1240 -72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HTAGTCTGRCGCCYTAMCCACTKSGCCAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 54 E= 2.8e-214 0.203704 0.370370 0.055556 0.370370 0.203704 0.111111 0.203704 0.481481 0.981481 0.018519 0.000000 0.000000 0.277778 0.000000 0.722222 0.000000 0.037037 0.259259 0.129630 0.574074 0.148148 0.611111 0.240741 0.000000 0.203704 0.166667 0.203704 0.425926 0.185185 0.074074 0.574074 0.166667 0.314815 0.055556 0.462963 0.166667 0.018519 0.851852 0.000000 0.129630 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.648148 0.185185 0.166667 0.000000 0.351852 0.055556 0.592593 0.000000 0.000000 0.000000 1.000000 0.851852 0.055556 0.055556 0.037037 0.444444 0.444444 0.111111 0.000000 0.129630 0.870370 0.000000 0.000000 0.240741 0.555556 0.166667 0.037037 0.870370 0.129630 0.000000 0.000000 0.259259 0.555556 0.055556 0.129630 0.000000 0.314815 0.000000 0.685185 0.092593 0.166667 0.314815 0.425926 0.166667 0.314815 0.462963 0.055556 0.000000 0.000000 1.000000 0.000000 0.000000 0.685185 0.314815 0.000000 0.000000 0.833333 0.000000 0.166667 0.685185 0.314815 0.000000 0.000000 0.592593 0.222222 0.000000 0.185185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HTAGTCTGRCGCCYTAMCCACTKSGCCAA MEME-1 regular expression -------------------------------------------------------------------------------- [CTA][TAG]A[GA][TC][CG][TAG]G[GA]CGCC[TC]TA[AC]C[CA]A[CA][TC][TG][GC]G[CG]C[AC][AC] -------------------------------------------------------------------------------- Time 316.46 secs. ******************************************************************************** ******************************************************************************** MOTIF YAABSNGRAGRTCMBSGGTTCGATYCCSVK MEME-2 width = 30 sites = 47 llr = 967 E-value = 3.5e-174 ******************************************************************************** -------------------------------------------------------------------------------- Motif YAABSNGRAGRTCMBSGGTTCGATYCCSVK MEME-2 Description -------------------------------------------------------------------------------- Simplified A 167::2236243:3::2::::3a1::::31 pos.-specific C 3213521111:17544::::a::14a7531 probability G 11125454376::1358a:::7:2:::445 matrix T 6:14:221:::63131::aa:::56:3::3 bits 2.4 * * * 2.1 * * * 1.9 * * * 1.6 **** * * Relative 1.4 * * ******* * Entropy 1.2 * * * ******* ** (29.7 bits) 0.9 * ** * ******* **** 0.7 * ** * ******** ***** 0.5 ***** * *************** ****** 0.2 ****************************** 0.0 ------------------------------ Multilevel TAATCGGGAGGTCCCGGGTTCGATTCCCGG consensus CC CGTAAG AATAGCA A C TGCT sequence G C T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAABSNGRAGRTCMBSGGTTCGATYCCSVK MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrVII:738958-739322 + 68 2.53e-13 ACCGTGCTAA TAACGCGGGGATCAGCGGTTCGATCCCGCT AGA chrV:551169-551496 - 11 2.53e-13 ACCGTGCTAA TAACGCGGGGATCAGCGGTTCGATCCCGCT AGAGACCATT chrXVI:880124-880550 - 17 2.53e-13 ACCGTGCTAA TAACGCGGGGATCAGCGGTTCGATCCCGCT AGAGACCATT chrXVI:819340-819768 + 61 2.53e-13 ACCGTGCTAA TAACGCGGGGATCAGCGGTTCGATCCCGCT AGAGACCATT chrXIV:631713-632073 - 11 1.25e-12 TCTCGCTTAG GGTGCGGGAGGTCCCGGGTTCGAGTCCCGG CTCGCCCCCA chrIV:83412-83717 + 67 1.46e-12 TCCAACGTTG CCATCGTTGGGCCCCCGGTTCGATTCCGGG CTTG chrXVI:572115-572509 + 40 1.46e-12 TCCAACGTTG CCATCGTTGGGCCCCCGGTTCGATTCCGGG CTTGCGCAAT chrXVI:860218-860680 + 13 1.46e-12 TCCAACGTTG CCATCGTTGGGCCCCCGGTTCGATTCCGGG CTTGCGCAGA chrI:166139-166498 + 34 2.26e-12 GCTTCCCTTG CAAGGAAGAGGTCATCGGTTCGATTCCGGT TGCGTCCAAA chrVII:541672-542066 + 65 3.47e-12 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCCCG TATCGG chrXI:140830-141243 - 40 3.47e-12 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCCCG TATCGGAGTT chrVII:401319-401759 - 46 3.47e-12 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCCCG TATCGGAGTA chrVIII:134192-134509 + 55 1.69e-11 CTTTCGGTTT TGATCCGGACAACCCCGGTTCGAATCCGGG TAGGACCTTT chrXII:448442-448873 - 51 1.69e-11 CTTTCGGTTT TGATCCGGACAACCCCGGTTCGAATCCGGG TAGGACCTTC chrIV:1075357-1075702 - 1 2.15e-11 GTTGCCTTCA CACGGCAAAGGTCCCGAGTTCGATCCTCGG chrVIII:475604-475922 - 1 2.15e-11 GTTGCCTTCA CACGGCAAAGGTCCCGAGTTCGATCCTCGG chrVII:122133-122450 + 63 3.08e-11 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCCCCT ACAGGGCT chrVIII:388810-389006 - 43 3.08e-11 GAAGACAAAG CATGCGAGAGGCCCTGGGTTCAATTCCCAG CTCGCCCCAT chrVI:226576-226904 - 6 3.08e-11 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCCCCT ACAGG chrIV:488649-489056 - 3 4.90e-11 GTCGCCTTTA CACGGCGAAGATCCCGAGTTCGAACCTCGG TT chrIV:434188-434445 - 6 6.14e-11 GCCACACTAG TAATGTGGAGATCATCGGTTCAAATCCGAT TGGAA chrII:266224-266588 + 57 6.14e-11 GCCACACTAG TAATGTGGAGATCATCGGTTCAAATCCGAT TGGAAGCATT chrIII:295334-295764 + 20 6.14e-11 GCCACACTAG TAATGTGGAGATCATCGGTTCAAATCCGAT TGGAAGCATT chrII:405715-406135 + 37 6.86e-11 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCCAT CGTGAGTGCT chrX:374289-374389 - 55 6.86e-11 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCCAT CGTGAGTGCT chrX:538439-538539 + 69 8.53e-11 GTCTCCCTCC TAAGGAGAAGACTGCGGGTTCGAGTCCCGT AC chrIV:410208-410578 + 71 1.18e-10 GCTCCCTTAG CATGGGAGAGGTCTCCGGTTCGATTCCGGA chrX:197231-197331 - 13 1.18e-10 GCTCCCTTAG CATGGGAGAGGTCTCCGGTTCGATTCCGGA CTCGTCCAAT chrVIII:146130-146451 - 10 1.18e-10 GCTCCCTTAG CATGGGAGAGGTCTCCGGTTCGATTCCGGA CTCGTCCAA chrXI:308039-308351 - 7 1.78e-10 ATCTGCTTAA CACGCAGAACGTCCCCAGTTCGATCCTGGG CGAAAT chrXIV:96122-96471 - 3 2.40e-10 TCCCACCCTT CCAAGGTGGGGACACGGGTTCGATTCTCGT AC chrVII:544453-544814 - 2 1.35e-09 TGGGCGCTTG TCGCGTGCCAGATCGGGGTTCAATTCCCCG T chrX:541403-541503 + 59 1.35e-09 TGGGCGCTTG TCGCGTGCCAGATCGGGGTTCAATTCCCCG TCGCGGAGAT chrXIII:463403-463748 + 63 1.35e-09 TGGGCGCTTG TCGCGTGCCAGATCGGGGTTCAATTCCCCG TCGCGGAG chrIX:324204-324406 - 56 1.35e-09 TGGGCGCTTG TCGCGTGCCAGATCGGGGTTCAATTCCCCG TCGCGGAGAT chrIV:1175659-1176047 + 61 3.24e-09 GTCAGTCTCA TAATCTGAAGGTCGAGAGTTCGAACCTCCC CTGGAGCATT chrXII:818491-818789 + 53 3.76e-09 TGCATTCTTC CGGTGGCTGTGATCCGGGTTCGAGTCCCGG GAGGAGCTTT chrVII:440502-440986 - 30 3.76e-09 TTCGGTCAAG TTATCTGGAGGTCCTGTGTTCGATCCACAG AATTCGCATA chrIV:359434-359800 + 68 4.36e-09 TTAAGCAAGG ATACCGAAATGTCAGGGGTTCGAGCCCCCT ATG chrXV:340192-340519 - 2 5.04e-09 GTCTGGCTAC GAACCAGAAGATTCCAGGTTCAAGTCCTGG C chrV:492235-492577 - 4 5.04e-09 GTCTGGCTAC GAACCAGAAGATTCCAGGTTCAAGTCCTGG CGG chrXIV:102575-102995 + 17 8.21e-09 GTGCGACTGT TAATCGCAAGATCGTGAGTTCAACCCTCAC TGGGGTCGTT chrVI:137312-137708 - 34 8.21e-09 GTGCGACTGT TAATCGCAAGATCGTGAGTTCAACCCTCAC TGGGGTCGTT chrII:642893-643202 - 18 1.00e-08 AGCAGATTGC AAATCTGTTGGTCCTTAGTTCGATCCTGAG TGCGAGCTTC chrVII:707006-707184 - 71 1.00e-08 . AAATCTGTTGGTCCTTAGTTCGATCCTGAG TGCGAGCTTT chrXVI:744133-744470 + 67 1.14e-08 GTTGCACTTG TAATGCAAAGGTCGTTAGTTCAATTCTGAC AGGT chrVII:110496-110806 - 32 3.17e-08 CACATCGTTG TGGCCGATGAAACCCTGGTTCGATTCTAGG AGATGGCAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAABSNGRAGRTCMBSGGTTCGATYCCSVK MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:738958-739322 2.5e-13 67_[+2]_3 chrV:551169-551496 2.5e-13 10_[-2]_60 chrXVI:880124-880550 2.5e-13 16_[-2]_54 chrXVI:819340-819768 2.5e-13 60_[+2]_10 chrXIV:631713-632073 1.3e-12 10_[-2]_60 chrIV:83412-83717 1.5e-12 66_[+2]_4 chrXVI:572115-572509 1.5e-12 39_[+2]_31 chrXVI:860218-860680 1.5e-12 12_[+2]_58 chrI:166139-166498 2.3e-12 33_[+2]_37 chrVII:541672-542066 3.5e-12 64_[+2]_6 chrXI:140830-141243 3.5e-12 39_[-2]_31 chrVII:401319-401759 3.5e-12 45_[-2]_25 chrVIII:134192-134509 1.7e-11 54_[+2]_16 chrXII:448442-448873 1.7e-11 50_[-2]_20 chrIV:1075357-1075702 2.2e-11 [-2]_70 chrVIII:475604-475922 2.2e-11 [-2]_70 chrVII:122133-122450 3.1e-11 62_[+2]_8 chrVIII:388810-389006 3.1e-11 42_[-2]_28 chrVI:226576-226904 3.1e-11 5_[-2]_65 chrIV:488649-489056 4.9e-11 2_[-2]_68 chrIV:434188-434445 6.1e-11 5_[-2]_65 chrII:266224-266588 6.1e-11 56_[+2]_14 chrIII:295334-295764 6.1e-11 19_[+2]_51 chrII:405715-406135 6.9e-11 36_[+2]_34 chrX:374289-374389 6.9e-11 54_[-2]_16 chrX:538439-538539 8.5e-11 68_[+2]_2 chrIV:410208-410578 1.2e-10 70_[+2] chrX:197231-197331 1.2e-10 12_[-2]_58 chrVIII:146130-146451 1.2e-10 9_[-2]_61 chrXI:308039-308351 1.8e-10 6_[-2]_64 chrXIV:96122-96471 2.4e-10 2_[-2]_68 chrVII:544453-544814 1.4e-09 1_[-2]_69 chrX:541403-541503 1.4e-09 58_[+2]_12 chrXIII:463403-463748 1.4e-09 62_[+2]_8 chrIX:324204-324406 1.4e-09 55_[-2]_15 chrIV:1175659-1176047 3.2e-09 60_[+2]_10 chrXII:818491-818789 3.8e-09 52_[+2]_18 chrVII:440502-440986 3.8e-09 29_[-2]_41 chrIV:359434-359800 4.4e-09 67_[+2]_3 chrXV:340192-340519 5e-09 1_[-2]_69 chrV:492235-492577 5e-09 3_[-2]_67 chrXIV:102575-102995 8.2e-09 16_[+2]_54 chrVI:137312-137708 8.2e-09 33_[-2]_37 chrII:642893-643202 1e-08 17_[-2]_53 chrVII:707006-707184 1e-08 70_[-2] chrXVI:744133-744470 1.1e-08 66_[+2]_4 chrVII:110496-110806 3.2e-08 31_[-2]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAABSNGRAGRTCMBSGGTTCGATYCCSVK MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YAABSNGRAGRTCMBSGGTTCGATYCCSVK width=30 seqs=47 chrVII:738958-739322 ( 68) TAACGCGGGGATCAGCGGTTCGATCCCGCT 1 chrV:551169-551496 ( 11) TAACGCGGGGATCAGCGGTTCGATCCCGCT 1 chrXVI:880124-880550 ( 17) TAACGCGGGGATCAGCGGTTCGATCCCGCT 1 chrXVI:819340-819768 ( 61) TAACGCGGGGATCAGCGGTTCGATCCCGCT 1 chrXIV:631713-632073 ( 11) GGTGCGGGAGGTCCCGGGTTCGAGTCCCGG 1 chrIV:83412-83717 ( 67) CCATCGTTGGGCCCCCGGTTCGATTCCGGG 1 chrXVI:572115-572509 ( 40) CCATCGTTGGGCCCCCGGTTCGATTCCGGG 1 chrXVI:860218-860680 ( 13) CCATCGTTGGGCCCCCGGTTCGATTCCGGG 1 chrI:166139-166498 ( 34) CAAGGAAGAGGTCATCGGTTCGATTCCGGT 1 chrVII:541672-542066 ( 65) TCACCGTGGAGACCGGGGTTCGACTCCCCG 1 chrXI:140830-141243 ( 40) TCACCGTGGAGACCGGGGTTCGACTCCCCG 1 chrVII:401319-401759 ( 46) TCACCGTGGAGACCGGGGTTCGACTCCCCG 1 chrVIII:134192-134509 ( 55) TGATCCGGACAACCCCGGTTCGAATCCGGG 1 chrXII:448442-448873 ( 51) TGATCCGGACAACCCCGGTTCGAATCCGGG 1 chrIV:1075357-1075702 ( 1) CACGGCAAAGGTCCCGAGTTCGATCCTCGG 1 chrVIII:475604-475922 ( 1) CACGGCAAAGGTCCCGAGTTCGATCCTCGG 1 chrVII:122133-122450 ( 63) TAATCATAAGGTTAGGGGTTCGAGCCCCCT 1 chrVIII:388810-389006 ( 43) CATGCGAGAGGCCCTGGGTTCAATTCCCAG 1 chrVI:226576-226904 ( 6) TAATCATAAGGTTAGGGGTTCGAGCCCCCT 1 chrIV:488649-489056 ( 3) CACGGCGAAGATCCCGAGTTCGAACCTCGG 1 chrIV:434188-434445 ( 6) TAATGTGGAGATCATCGGTTCAAATCCGAT 1 chrII:266224-266588 ( 57) TAATGTGGAGATCATCGGTTCAAATCCGAT 1 chrIII:295334-295764 ( 20) TAATGTGGAGATCATCGGTTCAAATCCGAT 1 chrII:405715-406135 ( 37) TAATCAGAAGATTATGGGTTCGACCCCCAT 1 chrX:374289-374389 ( 55) TAATCAGAAGATTATGGGTTCGACCCCCAT 1 chrX:538439-538539 ( 69) TAAGGAGAAGACTGCGGGTTCGAGTCCCGT 1 chrIV:410208-410578 ( 71) CATGGGAGAGGTCTCCGGTTCGATTCCGGA 1 chrX:197231-197331 ( 13) CATGGGAGAGGTCTCCGGTTCGATTCCGGA 1 chrVIII:146130-146451 ( 10) CATGGGAGAGGTCTCCGGTTCGATTCCGGA 1 chrXI:308039-308351 ( 7) CACGCAGAACGTCCCCAGTTCGATCCTGGG 1 chrXIV:96122-96471 ( 3) CCAAGGTGGGGACACGGGTTCGATTCTCGT 1 chrVII:544453-544814 ( 2) TCGCGTGCCAGATCGGGGTTCAATTCCCCG 1 chrX:541403-541503 ( 59) TCGCGTGCCAGATCGGGGTTCAATTCCCCG 1 chrXIII:463403-463748 ( 63) TCGCGTGCCAGATCGGGGTTCAATTCCCCG 1 chrIX:324204-324406 ( 56) TCGCGTGCCAGATCGGGGTTCAATTCCCCG 1 chrIV:1175659-1176047 ( 61) TAATCTGAAGGTCGAGAGTTCGAACCTCCC 1 chrXII:818491-818789 ( 53) CGGTGGCTGTGATCCGGGTTCGAGTCCCGG 1 chrVII:440502-440986 ( 30) TTATCTGGAGGTCCTGTGTTCGATCCACAG 1 chrIV:359434-359800 ( 68) ATACCGAAATGTCAGGGGTTCGAGCCCCCT 1 chrXV:340192-340519 ( 2) GAACCAGAAGATTCCAGGTTCAAGTCCTGG 1 chrV:492235-492577 ( 4) GAACCAGAAGATTCCAGGTTCAAGTCCTGG 1 chrXIV:102575-102995 ( 17) TAATCGCAAGATCGTGAGTTCAACCCTCAC 1 chrVI:137312-137708 ( 34) TAATCGCAAGATCGTGAGTTCAACCCTCAC 1 chrII:642893-643202 ( 18) AAATCTGTTGGTCCTTAGTTCGATCCTGAG 1 chrVII:707006-707184 ( 71) AAATCTGTTGGTCCTTAGTTCGATCCTGAG 1 chrXVI:744133-744470 ( 67) TAATGCAAAGGTCGTTAGTTCAATTCTGAC 1 chrVII:110496-110806 ( 32) TGGCCGATGAAACCCTGGTTCGATTCTAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAABSNGRAGRTCMBSGGTTCGATYCCSVK MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 40186 bayes= 10.1639 E= 3.5e-174 -225 61 -162 92 102 26 -88 -284 116 -120 -62 -152 -383 70 26 48 -1220 144 126 -1220 -67 12 89 -38 -52 -162 144 -67 16 -120 112 -103 97 -120 50 -284 -84 -162 189 -284 33 -1220 166 -1220 -25 -88 -1220 107 -1220 193 -1220 -25 -3 144 -88 -225 -383 105 61 -14 -284 89 138 -184 -52 -1220 197 -383 -1220 -1220 235 -1220 -1220 -1220 -1220 172 -1220 -1220 -1220 172 -1220 235 -1220 -1220 -14 -1220 189 -1220 172 -1220 -1220 -1220 -103 -39 -20 81 -1220 105 -1220 97 -1220 235 -1220 -1220 -383 189 -1220 -25 -383 138 112 -284 -25 70 112 -1220 -225 -120 144 7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAABSNGRAGRTCMBSGGTTCGATYCCSVK MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 47 E= 3.5e-174 0.063830 0.297872 0.063830 0.574468 0.617021 0.234043 0.106383 0.042553 0.680851 0.085106 0.127660 0.106383 0.021277 0.319149 0.234043 0.425532 0.000000 0.531915 0.468085 0.000000 0.191489 0.212766 0.361702 0.234043 0.212766 0.063830 0.531915 0.191489 0.340426 0.085106 0.425532 0.148936 0.595745 0.085106 0.276596 0.042553 0.170213 0.063830 0.723404 0.042553 0.382979 0.000000 0.617021 0.000000 0.255319 0.106383 0.000000 0.638298 0.000000 0.744681 0.000000 0.255319 0.297872 0.531915 0.106383 0.063830 0.021277 0.404255 0.297872 0.276596 0.042553 0.361702 0.510638 0.085106 0.212766 0.000000 0.765957 0.021277 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.276596 0.000000 0.723404 0.000000 1.000000 0.000000 0.000000 0.000000 0.148936 0.148936 0.170213 0.531915 0.000000 0.404255 0.000000 0.595745 0.000000 1.000000 0.000000 0.000000 0.021277 0.723404 0.000000 0.255319 0.021277 0.510638 0.425532 0.042553 0.255319 0.319149 0.425532 0.000000 0.063830 0.085106 0.531915 0.319149 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAABSNGRAGRTCMBSGGTTCGATYCCSVK MEME-2 regular expression -------------------------------------------------------------------------------- [TC][AC]A[TCG][CG][GTC][GA][GA][AG]G[GA][TA][CT][CA][CGT][GC][GA]GTTC[GA]AT[TC]C[CT][CG][GCA][GT] -------------------------------------------------------------------------------- Time 604.28 secs. ******************************************************************************** ******************************************************************************** MOTIF MYRTKMTARCCRYTAMACTA MEME-3 width = 20 sites = 25 llr = 466 E-value = 3.6e-059 ******************************************************************************** -------------------------------------------------------------------------------- Motif MYRTKMTARCCRYTAMACTA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 524:15:76::6::94a::a pos.-specific C 34:::5:::aa:4::6:a1: probability G 2:6:6::34::4::1::::: matrix T :4:a4:a:::::6a:1::9: bits 2.4 ** * 2.1 ** * 1.9 ** * 1.6 * * ** * ** * Relative 1.4 * * ** * **** Entropy 1.2 ** * ** ** **** (26.9 bits) 0.9 ** ********** **** 0.7 ****************** 0.5 * ****************** 0.2 ******************** 0.0 -------------------- Multilevel ACGTGATAACCATTACACTA consensus CTA TC GG GC A sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MYRTKMTARCCRYTAMACTA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chrIV:1075357-1075702 + 39 4.23e-11 TGTGAAGGCA ACGTGATAGCCGCTACACTA TTGGAACAAT chrVIII:475604-475922 + 39 4.23e-11 TGTGAAGGCA ACGTGATAGCCGCTACACTA TTGGAACAGA chrII:645021-645327 - 50 6.92e-11 TGAAAGCGTG ATGTGATAGCCGTTACACTA TATCGGATAA chrXIII:290629-290988 - 50 6.92e-11 TGAAAGCGTG ATGTGATAGCCGTTACACTA TATCGGATTA chrIX:370230-370565 - 77 6.92e-11 CGTG ATGTGATAGCCGTTACACTA TATCGGATTA chrIII:82388-82661 + 33 6.92e-11 TGAAAGCGTG ATGTGATAGCCGTTACACTA TATCGGATAA chrXII:797015-797341 - 57 6.92e-11 TGAAAGCGTG ATGTGATAGCCGTTACACTA TATCGGACGA chrVII:541672-542066 - 38 6.92e-11 TGAAAGCGTG ATGTGATAGCCGTTACACTA TATCGGATGG chrXI:140830-141243 + 77 6.92e-11 TGAAAGCGTG ATGTGATAGCCGTTACACTA TATC chrX:115835-115935 + 22 6.92e-11 TGAAAGCGTG ATGTGATAGCCGTTACACTA TATCGGATTA chrVIII:134192-134509 - 28 8.44e-10 TCAAAACCGA AAGTGATAACCACTACACTA TAGGACCGGA chrIII:168212-168554 + 13 8.44e-10 TCAAAACCGA AAGTGATAACCACTACACTA TAGGACCAGG chrXII:818491-818789 - 26 2.10e-09 CCGGAAGAAT GCATGCTAACCATTGCACTA GAGGAGCATA chrX:374289-374389 + 10 2.84e-09 GACAAGCGC CCATTCTGACCATTAAACTA TCACGGAAGA chrVII:544453-544814 + 39 2.84e-09 CGACAAGCGC CCATTCTGACCATTAAACTA TCACGGAAGA chrX:541403-541503 - 32 2.84e-09 CGACAAGCGC CCATTCTGACCATTAAACTA TCACGGATTT chrXII:426985-427281 - 56 2.84e-09 CGACAAGCGC CCATTCTGACCATTAAACTA TCACGGATAA chrXIII:463403-463748 - 36 2.84e-09 CGACAAGCGC CCATTCTGACCATTAAACTA TCACGGACAA chrXV:571813-572116 - 51 2.84e-09 CGACAAGCGC CCATTCTGACCATTAAACTA TCACGGATTT chrIX:336259-336559 + 35 2.84e-09 CGACAAGCGC CCATTCTGACCATTAAACTA TCACGGATTT chrXIV:96122-96471 + 40 6.76e-09 TGGAAGGGTG GGATGATAACCACTACACTA ACCGCCCATG chrXIII:362920-363222 - 50 1.72e-08 CCACAACGAT GTGTACTAACCACTATACTA AGATGGCAAA chrVII:110496-110806 + 69 1.72e-08 CCACAACGAT GTGTACTAACCACTATACTA AGATGGCAGG chrXV:594252-594573 + 37 2.69e-08 TGGGAAGCAT AAATTCTAACCACTGAACCA CTTGCGCGTT chrIV:1256921-1257238 + 24 2.89e-08 TGGGAAGCAT GAATTCTAACCACTGAACCA CTTTCGCTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MYRTKMTARCCRYTAMACTA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1075357-1075702 4.2e-11 38_[+3]_42 chrVIII:475604-475922 4.2e-11 38_[+3]_42 chrII:645021-645327 6.9e-11 49_[-3]_31 chrXIII:290629-290988 6.9e-11 49_[-3]_31 chrIX:370230-370565 6.9e-11 76_[-3]_4 chrIII:82388-82661 6.9e-11 32_[+3]_48 chrXII:797015-797341 6.9e-11 56_[-3]_24 chrVII:541672-542066 6.9e-11 37_[-3]_43 chrXI:140830-141243 6.9e-11 76_[+3]_4 chrX:115835-115935 6.9e-11 21_[+3]_59 chrVIII:134192-134509 8.4e-10 27_[-3]_53 chrIII:168212-168554 8.4e-10 12_[+3]_68 chrXII:818491-818789 2.1e-09 25_[-3]_55 chrX:374289-374389 2.8e-09 9_[+3]_71 chrVII:544453-544814 2.8e-09 38_[+3]_42 chrX:541403-541503 2.8e-09 31_[-3]_49 chrXII:426985-427281 2.8e-09 55_[-3]_25 chrXIII:463403-463748 2.8e-09 35_[-3]_45 chrXV:571813-572116 2.8e-09 50_[-3]_30 chrIX:336259-336559 2.8e-09 34_[+3]_46 chrXIV:96122-96471 6.8e-09 39_[+3]_41 chrXIII:362920-363222 1.7e-08 49_[-3]_31 chrVII:110496-110806 1.7e-08 68_[+3]_12 chrXV:594252-594573 2.7e-08 36_[+3]_44 chrIV:1256921-1257238 2.9e-08 23_[+3]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MYRTKMTARCCRYTAMACTA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MYRTKMTARCCRYTAMACTA width=20 seqs=25 chrIV:1075357-1075702 ( 39) ACGTGATAGCCGCTACACTA 1 chrVIII:475604-475922 ( 39) ACGTGATAGCCGCTACACTA 1 chrII:645021-645327 ( 50) ATGTGATAGCCGTTACACTA 1 chrXIII:290629-290988 ( 50) ATGTGATAGCCGTTACACTA 1 chrIX:370230-370565 ( 77) ATGTGATAGCCGTTACACTA 1 chrIII:82388-82661 ( 33) ATGTGATAGCCGTTACACTA 1 chrXII:797015-797341 ( 57) ATGTGATAGCCGTTACACTA 1 chrVII:541672-542066 ( 38) ATGTGATAGCCGTTACACTA 1 chrXI:140830-141243 ( 77) ATGTGATAGCCGTTACACTA 1 chrX:115835-115935 ( 22) ATGTGATAGCCGTTACACTA 1 chrVIII:134192-134509 ( 28) AAGTGATAACCACTACACTA 1 chrIII:168212-168554 ( 13) AAGTGATAACCACTACACTA 1 chrXII:818491-818789 ( 26) GCATGCTAACCATTGCACTA 1 chrX:374289-374389 ( 10) CCATTCTGACCATTAAACTA 1 chrVII:544453-544814 ( 39) CCATTCTGACCATTAAACTA 1 chrX:541403-541503 ( 32) CCATTCTGACCATTAAACTA 1 chrXII:426985-427281 ( 56) CCATTCTGACCATTAAACTA 1 chrXIII:463403-463748 ( 36) CCATTCTGACCATTAAACTA 1 chrXV:571813-572116 ( 51) CCATTCTGACCATTAAACTA 1 chrIX:336259-336559 ( 35) CCATTCTGACCATTAAACTA 1 chrXIV:96122-96471 ( 40) GGATGATAACCACTACACTA 1 chrXIII:362920-363222 ( 50) GTGTACTAACCACTATACTA 1 chrVII:110496-110806 ( 69) GTGTACTAACCACTATACTA 1 chrXV:594252-594573 ( 37) AAATTCTAACCACTGAACCA 1 chrIV:1256921-1257238 ( 24) GAATTCTAACCACTGAACCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MYRTKMTARCCRYTAMACTA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 45846 bayes= 11.3301 E= 3.6e-059 77 52 3 -1129 -93 103 -229 39 53 -1129 152 -1129 -1129 -1129 -1129 172 -193 -1129 152 24 77 129 -1129 -1129 -1129 -1129 -1129 172 124 -1129 52 -1129 98 -1129 103 -1129 -1129 235 -1129 -1129 -1129 235 -1129 -1129 98 -1129 103 -1129 -1129 88 -1129 107 -1129 -1129 -1129 172 153 -1129 -71 -1129 24 152 -1129 -193 172 -1129 -1129 -1129 -1129 235 -1129 -1129 -1129 -129 -1129 160 172 -1129 -1129 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MYRTKMTARCCRYTAMACTA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 25 E= 3.6e-059 0.520000 0.280000 0.200000 0.000000 0.160000 0.400000 0.040000 0.400000 0.440000 0.000000 0.560000 0.000000 0.000000 0.000000 0.000000 1.000000 0.080000 0.000000 0.560000 0.360000 0.520000 0.480000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.720000 0.000000 0.280000 0.000000 0.600000 0.000000 0.400000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.000000 0.400000 0.000000 0.000000 0.360000 0.000000 0.640000 0.000000 0.000000 0.000000 1.000000 0.880000 0.000000 0.120000 0.000000 0.360000 0.560000 0.000000 0.080000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.080000 0.000000 0.920000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MYRTKMTARCCRYTAMACTA MEME-3 regular expression -------------------------------------------------------------------------------- [ACG][CT][GA]T[GT][AC]T[AG][AG]CC[AG][TC]TA[CA]ACTA -------------------------------------------------------------------------------- Time 887.29 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:332375-332695 9.96e-01 100 chrIX:254281-254500 3.94e-01 100 chrXIII:500308-500478 4.19e-02 100 chrIX:336259-336559 6.27e-06 34_[+3(2.84e-09)]_46 chrII:159838-159976 1.48e-01 100 chrV:85106-85689 1.47e-01 100 chrIII:127549-127876 1.30e-05 60_[-1(7.61e-10)]_11 chrXV:29168-29608 9.89e-01 100 chrIII:177160-177678 5.68e-01 100 chrIV:385932-386237 3.08e-01 100 chrXIV:585850-586511 6.05e-01 100 chrXII:722804-723244 9.32e-01 100 chrX:58991-59091 2.52e-10 25_[+1(5.31e-14)]_46 chrVIII:75000-75322 7.42e-01 100 chrXI:102038-102478 1.33e-01 100 chrXV:353953-354270 9.33e-11 17_[+1(5.31e-14)]_54 chrV:78186-79005 6.60e-01 100 chrVII:440502-440986 2.32e-05 29_[-2(3.76e-09)]_41 chrXIII:508805-509245 5.85e-01 100 chrVII:700512-701216 1.00e+00 100 chrX:123531-123631 9.65e-01 100 chrXI:308039-308351 2.05e-08 6_[-2(1.78e-10)]_[+1(7.30e-05)]_35 chrXV:989067-989448 2.61e-01 100 chrXII:806143-806482 6.95e-01 100 chrXII:449382-449822 3.91e-01 100 chrII:477070-477434 9.91e-01 100 chrXII:793740-795190 9.41e-01 100 chrVII:707006-707184 2.21e-05 70_[-2(1.00e-08)] chrIV:929340-929780 2.66e-01 100 chrV:306485-306925 3.12e-01 100 chrXII:713241-713521 9.02e-01 100 chrVII:480957-481275 8.83e-01 100 chrV:491048-491419 3.57e-02 100 chrXVI:678893-679341 2.75e-01 100 chrXIII:301677-302117 4.66e-01 100 chrVI:95535-95820 2.16e-01 100 chrIII:162822-163262 4.04e-01 100 chrX:517727-517827 1.18e-01 100 chrIV:722422-722862 5.25e-01 100 chrXV:444848-445813 1.45e-01 100 chrXIII:162187-162302 2.22e-02 56_[+2(4.30e-05)]_14 chrIII:107198-107619 3.16e-02 28_[-2(9.36e-05)]_42 chrIII:178407-178599 9.17e-01 100 chrXVI:280584-281474 4.64e-01 100 chrXVI:407170-407610 6.86e-01 100 chrVII:227617-227769 9.96e-01 100 chrXIV:721063-721503 2.82e-01 100 chrVII:148480-148920 9.98e-01 100 chrII:606482-606922 1.14e-01 100 chrVI:157848-158181 3.32e-06 8_[+1(4.78e-10)]_63 chrIV:362750-363190 3.49e-01 100 chrXV:91995-92435 1.73e-01 100 chrXIV:628716-628961 9.12e-01 100 chrVIII:451489-453023 3.99e-01 100 chrIV:341346-341548 2.07e-01 100 chrVIII:146130-146451 3.85e-14 9_[-2(1.18e-10)]_[+1(5.26e-10)]_32 chrIV:884216-884604 2.58e-08 6_[-1(1.98e-08)]_65 chrXII:809188-809628 4.21e-02 69_[+1(3.13e-05)]_2 chrIV:234205-234645 6.49e-01 100 chrIX:324204-324406 2.89e-06 55_[-2(1.35e-09)]_15 chrIV:555943-556205 4.46e-01 100 chrVII:702911-703229 4.39e-01 100 chrVII:205346-205717 3.09e-05 46_[-1(2.50e-09)]_25 chrXV:571813-572116 3.02e-06 50_[-3(2.84e-09)]_30 chrXIV:62435-62875 9.26e-01 100 chrII:681043-681511 5.24e-01 100 chrVII:807210-807429 9.99e-01 100 chrIV:118401-118841 7.36e-01 100 chrVI:83966-84306 6.63e-01 100 chrXI:326231-327393 7.11e-02 100 chrXI:108832-109007 8.55e-01 100 chrXV:315802-316242 5.66e-01 100 chrXIII:259055-259396 5.73e-08 29_[+1(1.79e-12)]_42 chrXII:784217-784546 2.76e-05 28_[-1(6.61e-09)]_43 chrXIV:301700-302117 8.22e-01 100 chrII:605785-606109 7.18e-01 100 chrXIII:163206-163317 6.26e-01 100 chrXIV:301700-302108 1.09e-01 1_[+3(9.81e-05)]_79 chrV:511266-511706 2.59e-02 100 chrXV:904242-904635 9.16e-01 100 chrVII:148276-148716 8.61e-01 100 chrIV:1080476-1080747 6.82e-02 100 chrIV:1270275-1270494 5.74e-01 100 chrVIII:471684-472124 3.86e-01 100 chrIV:307021-307461 1.22e-02 28_[+2(1.62e-05)]_42 chrIV:1302134-1302574 4.46e-01 100 chrXV:160395-160741 8.67e-01 100 chrVII:876237-876544 2.18e-07 59_[-1(1.95e-10)]_12 chrXII:232101-234016 9.13e-02 100 chrXIII:758964-759404 3.18e-02 68_[+2(1.93e-05)]_2 chrXV:384738-385013 1.81e-01 100 chrXIV:494168-494608 3.94e-01 100 chrXV:113668-113958 2.34e-10 44_[-1(5.31e-14)]_27 chrXVI:133489-133929 2.45e-01 100 chrIX:388228-388483 9.69e-01 100 chrII:88071-88602 8.56e-01 100 chrXI:558725-559031 8.07e-01 100 chrII:60939-61209 8.51e-01 100 chrXIV:577126-577334 8.53e-01 100 chrXII:449602-450042 2.78e-01 100 chrII:391439-391879 2.98e-01 100 chrIII:138558-138851 1.79e-01 100 chrXIII:500397-500837 8.99e-02 100 chrII:89661-89899 3.44e-01 100 chrIV:1444010-1444450 2.37e-01 100 chrIX:257433-257596 6.31e-01 100 chrVI:82506-82946 1.19e-01 100 chrXIV:493951-494391 6.39e-01 100 chrXV:520619-520940 1.24e-01 100 chrIV:538931-539230 3.30e-01 100 chrVII:987325-987677 2.77e-01 100 chrXV:438481-438856 1.73e-06 30_[-1(1.53e-09)]_41 chrXII:86207-86647 9.33e-01 100 chrV:61179-62111 3.29e-01 100 chrX:139167-139267 7.62e-01 100 chrVI:226576-226904 5.51e-15 5_[-2(3.08e-11)]_[+1(1.95e-10)]_36 chrXIII:626388-626958 3.30e-02 5_[-1(7.70e-06)]_66 chrXVI:76420-76667 2.40e-01 100 chrVII:481406-482840 4.43e-01 100 chrXII:728283-728534 2.53e-01 100 chrIII:227805-228161 1.09e-07 14_[-1(4.37e-12)]_57 chrIV:359434-359800 3.95e-12 15_[-1(1.53e-09)]_23_[+2(4.36e-09)]_\ 3 chrV:305826-306162 4.90e-01 100 chrXII:931341-931781 1.34e-03 45_[+1(2.80e-05)]_26 chrXV:135788-136228 9.90e-01 100 chrXII:48009-48449 2.27e-01 100 chrV:241955-242395 5.54e-02 100 chrV:396267-396518 6.47e-01 100 chrXIV:303173-303516 9.29e-01 100 chrVII:727775-727926 9.95e-01 100 chrIX:248683-249057 5.00e-09 35_[-1(3.46e-13)]_36 chrX:390963-391063 4.22e-01 100 chrIII:11074-11514 9.56e-01 100 chrVII:556973-557413 7.71e-01 100 chrIII:142611-142942 9.32e-03 100 chrII:592941-593233 6.81e-01 100 chrVI:221838-222013 9.84e-01 100 chrVII:277115-277314 7.43e-01 100 chrVI:137312-137708 5.02e-11 33_[-2(8.21e-09)]_[+1(7.61e-10)]_8 chrIV:1401351-1401539 1.91e-01 100 chrIV:525520-525960 9.52e-01 100 chrVI:223374-223566 1.00e+00 100 chrXII:1029252-1029692 9.42e-01 100 chrXIII:225419-225679 9.98e-01 100 chrVIII:375383-375724 5.34e-01 100 chrVI:31040-31480 5.57e-01 100 chrV:141017-141375 7.10e-02 100 chrXIV:414073-414184 8.11e-02 100 chrXIV:776790-777072 6.90e-01 100 chrXI:159052-159492 5.77e-01 100 chrX:227708-227808 7.99e-01 100 chrIV:1489106-1489714 2.70e-01 100 chrVIII:237773-238094 5.83e-07 21_[+1(4.78e-10)]_50 chrXII:241701-241955 6.63e-01 100 chrXII:499070-499394 6.77e-01 100 chrXVI:403773-404213 1.30e-01 100 chrXVI:214902-215131 9.44e-01 100 chrV:79001-79484 7.26e-01 100 chrX:378226-378326 8.91e-02 44_[-1(7.30e-05)]_27 chrVIII:475604-475922 4.16e-15 [-2(2.15e-11)]_8_[+3(4.23e-11)]_42 chrXIV:631713-632073 6.42e-09 10_[-2(1.25e-12)]_60 chrX:224140-224240 1.38e-01 100 chrII:256442-256882 4.63e-01 100 chrVII:439335-439787 6.18e-01 100 chrX:172744-172844 9.90e-01 100 chrIX:394696-395167 9.96e-01 100 chrXIII:504908-505113 2.23e-01 100 chrV:68315-68755 5.38e-01 100 chrXIV:568240-568449 4.17e-01 100 chrXII:329300-329740 5.41e-01 100 chrXIII:754480-754710 9.97e-01 100 chrVIII:121138-121578 1.60e-01 100 chrXIII:732102-732317 9.35e-01 100 chrXVI:860218-860680 5.92e-09 12_[+2(1.46e-12)]_58 chrXIII:872734-872912 1.67e-01 100 chrV:469306-469596 4.90e-02 62_[-1(7.30e-05)]_9 chrXV:624040-624480 9.79e-01 100 chrIV:392720-393160 1.83e-01 100 chrIII:295334-295764 5.33e-08 19_[+2(6.14e-11)]_51 chrXII:1002454-1002705 5.57e-01 100 chrXVI:378254-378694 7.06e-01 100 chrVII:545464-545637 8.36e-01 100 chrVII:806284-806415 9.70e-01 100 chrXVI:585867-586068 7.57e-01 100 chrXV:87540-87725 8.29e-01 100 chrIV:914364-914537 5.08e-01 100 chrXII:704325-704604 7.00e-01 100 chrXIII:552664-553104 2.83e-01 100 chrIX:129951-130144 9.87e-02 100 chrII:397395-397835 9.64e-01 100 chrVII:557687-557943 1.15e-01 100 chrXV:110147-110587 1.25e-01 64_[-1(6.56e-05)]_7 chrXIV:351985-352218 4.97e-01 100 chrV:424934-425257 8.97e-01 100 chrII:604197-604404 7.38e-01 100 chrXV:725246-725686 7.61e-01 100 chrVII:401319-401759 1.79e-09 45_[-2(3.47e-12)]_25 chrVII:24206-24362 5.93e-01 100 chrIV:1163273-1163713 7.68e-01 100 chrXV:758976-759390 4.88e-01 100 chrV:77542-77868 4.69e-01 100 chrXV:1028744-1029055 5.73e-01 100 chrXII:283174-283547 6.91e-01 100 chrXIII:463403-463748 4.60e-12 35_[-3(2.84e-09)]_7_[+2(1.35e-09)]_\ 8 chrV:138528-139006 9.98e-01 100 chrXIV:414292-414402 6.62e-01 100 chrXVI:642839-643060 1.62e-01 100 chrIII:78340-78728 3.41e-01 100 chrVIII:105022-105462 7.26e-01 100 chrIV:1163877-1164317 2.24e-01 100 chrIX:388675-388897 7.92e-01 100 chrXII:922177-922494 1.35e-01 100 chrIV:130196-130636 8.32e-01 100 chrXI:163671-163902 4.39e-01 100 chrII:613348-613788 1.05e-01 45_[+1(9.21e-05)]_26 chrXVI:109614-109834 5.37e-01 100 chrXII:568146-568312 2.61e-01 100 chrXI:382880-383320 8.71e-01 100 chrIV:488649-489056 3.47e-09 2_[-2(4.90e-11)]_[+1(2.01e-05)]_39 chrVIII:388810-389006 5.61e-09 42_[-2(3.08e-11)]_28 chrI:72200-73276 4.62e-01 100 chrV:117678-118267 6.61e-01 100 chrVIII:115994-116355 1.30e-10 20_[+1(5.31e-14)]_51 chrX:663848-663948 4.69e-02 100 chrXI:355883-356449 7.68e-01 100 chrIV:1402972-1403362 8.94e-01 100 chrXIII:509903-510343 2.97e-01 100 chrXII:426985-427281 1.17e-05 55_[-3(2.84e-09)]_25 chrXII:545173-545613 1.01e-01 60_[+1(8.10e-05)]_11 chrIV:428219-428659 9.78e-01 100 chrV:225422-225739 9.19e-01 100 chrXV:796972-797374 2.10e-01 100 chrVII:649037-649299 5.45e-01 100 chrXIII:379227-379577 5.15e-02 100 chrVII:877196-877636 8.82e-01 100 chrXV:841721-841833 8.55e-01 100 chrIX:316177-316551 3.71e-01 100 chrXIII:861176-861365 3.12e-01 100 chrV:492235-492577 1.06e-11 3_[-2(5.04e-09)]_[+1(6.95e-10)]_38 chrXVI:771473-771913 6.47e-01 100 chrXV:340192-340519 1.06e-11 1_[-2(5.04e-09)]_[+1(6.95e-10)]_40 chrXIII:288729-289169 5.01e-01 100 chrXIV:88911-89729 6.62e-01 100 chrXV:622337-622491 8.05e-01 100 chrXV:925212-925416 3.71e-01 100 chrIX:97202-97476 3.54e-01 100 chrII:45102-45275 6.11e-01 100 chrXII:796464-796796 8.21e-01 100 chrXII:108389-108829 5.77e-01 100 chrX:197231-197331 3.85e-14 12_[-2(1.18e-10)]_[+1(5.26e-10)]_29 chrII:143769-144209 7.73e-01 100 chrXVI:819340-819768 4.80e-17 31_[-1(5.81e-11)]_[+2(2.53e-13)]_10 chrIV:835812-836116 1.54e-01 100 chrX:291098-291198 9.38e-01 100 chrV:267403-267555 2.88e-01 100 chrVII:534836-535173 4.82e-01 100 chrXIII:667749-668189 4.06e-01 100 chrXV:28965-29405 3.29e-01 100 chrX:354087-354187 1.04e-01 100 chrXV:980558-980864 7.58e-02 100 chrXIV:96122-96471 5.03e-12 2_[-2(2.40e-10)]_7_[+3(6.76e-09)]_\ 41 chrVII:277573-278013 3.43e-01 100 chrXII:498607-498772 5.08e-01 100 chrIX:255385-255674 7.53e-01 100 chrXII:366116-366410 1.11e-01 100 chrXII:92373-92771 5.72e-02 100 chrX:75409-75509 9.41e-01 100 chrXII:125602-126042 6.59e-01 100 chrXV:779734-781038 7.25e-02 100 chrIV:980876-981180 6.82e-09 42_[+1(1.79e-12)]_29 chrXII:810123-810563 1.11e-01 100 chrIV:1239692-1240132 1.53e-01 100 chrVII:311088-312231 6.92e-01 100 chrXIII:550010-550450 7.30e-01 100 chrI:142504-143180 1.59e-01 100 chrXII:818491-818789 2.39e-11 25_[-3(2.10e-09)]_7_[+2(3.76e-09)]_\ 18 chrXIV:518753-519193 3.76e-01 100 chrXVI:520210-520492 1.88e-01 100 chrXI:302756-303143 5.38e-01 100 chrIV:721865-722045 1.10e-01 100 chrXII:198836-199764 2.06e-01 100 chrIV:519633-519910 3.28e-07 28_[-1(1.29e-09)]_10_[+2(5.49e-05)]_\ 3 chrIV:1270463-1270582 9.51e-01 100 chrV:85809-86790 9.30e-01 100 chrXV:594252-594573 3.06e-05 36_[+3(2.69e-08)]_44 chrVIII:34454-35219 9.10e-01 100 chrVIII:555731-556171 5.63e-01 100 chrXII:592419-592737 2.99e-07 55_[+1(6.95e-10)]_16 chrX:115835-115935 1.14e-07 21_[+3(6.92e-11)]_59 chrIX:322560-323000 8.79e-01 100 chrVII:149163-149473 9.72e-01 100 chrIV:117232-117537 9.29e-01 100 chrXVI:689401-689790 1.01e-09 25_[-1(3.46e-13)]_46 chrV:362823-363263 7.77e-01 100 chrX:541403-541503 4.60e-12 31_[-3(2.84e-09)]_7_[+2(1.35e-09)]_\ 12 chrIII:315638-316078 1.91e-01 70_[-3(8.49e-05)]_10 chrXII:1028288-1028518 2.13e-01 100 chrX:531676-531776 8.62e-01 100 chrXI:618861-619163 3.61e-01 100 chrXV:671060-671437 6.60e-01 100 chrIV:308070-308321 3.06e-01 100 chrXI:98778-99218 9.61e-02 100 chrXV:976251-976612 3.95e-05 45_[-1(4.53e-08)]_26 chrXIV:230421-230546 1.94e-01 100 chrI:28474-28914 7.86e-01 100 chrVIII:451317-453023 6.89e-01 100 chrV:443126-443415 8.64e-07 19_[+1(5.81e-11)]_52 chrXIII:296833-298849 9.05e-01 100 chrXIII:747792-748131 4.70e-01 100 chrXII:962889-963227 1.82e-06 11_[+1(1.29e-09)]_60 chrIV:44141-44581 3.16e-01 100 chrVIII:103853-104293 9.95e-01 100 chrXVI:880124-880550 4.80e-17 16_[-2(2.53e-13)]_[+1(5.81e-11)]_25 chrXIV:499792-500813 7.58e-01 100 chrV:435667-435963 5.05e-08 24_[+1(1.95e-10)]_47 chrXI:517810-518155 1.32e-07 61_[-1(5.26e-10)]_10 chrXI:140830-141243 3.07e-16 39_[-2(3.47e-12)]_7_[+3(6.92e-11)]_\ 4 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chrXIII:290629-290988 6.90e-08 49_[-3(6.92e-11)]_31 chrIV:45585-46025 2.26e-01 100 chrXV:391532-391949 9.90e-01 100 chrIV:929619-930059 9.73e-01 100 chrVII:437354-437794 7.93e-01 100 chrX:120424-120524 6.19e-01 100 chrIV:129980-130405 7.76e-01 100 chrXVI:701154-701594 9.21e-02 100 chrVII:310558-310855 5.23e-01 100 chrVII:122133-122450 5.51e-15 4_[-1(8.53e-05)]_[-1(1.95e-10)]_\ [+2(3.08e-11)]_8 chrIV:1256921-1257238 1.81e-05 23_[+3(2.89e-08)]_57 chrX:620539-620639 7.96e-01 100 chrI:141674-141907 7.13e-01 100 chrXV:231922-232362 2.12e-02 100 chrX:538439-538539 5.65e-08 68_[+2(8.53e-11)]_2 chrVII:255219-255391 7.61e-01 100 chrXII:949513-949953 9.61e-01 100 chrXII:721847-722287 7.18e-01 100 chrIX:386638-386913 6.18e-01 100 chrIV:1490050-1490430 1.29e-01 100 chrXVI:718360-719181 2.37e-01 100 chrIX:98465-98905 6.71e-01 100 chrVII:483350-483713 3.03e-01 100 chrX:374289-374389 4.99e-13 9_[+3(2.84e-09)]_25_[-2(6.86e-11)]_\ 16 chrXVI:56050-56447 8.21e-02 55_[+2(9.12e-05)]_15 chrXII:932131-932446 9.90e-01 100 chrVII:346151-346653 9.00e-01 100 chrXIV:234185-234625 3.39e-01 100 chrXIV:415803-416243 3.57e-01 100 chrIII:149764-150082 7.44e-02 100 chrII:266224-266588 6.75e-18 27_[-1(5.31e-14)]_[+2(6.14e-11)]_14 chrXVI:572115-572509 1.35e-09 39_[+2(1.46e-12)]_31 chrXI:74447-74800 5.66e-07 57_[-1(7.61e-10)]_14 chrX:424332-424432 2.03e-06 23_[+1(1.29e-09)]_48 chrXVI:856734-857095 9.83e-08 43_[-1(5.26e-10)]_28 chrV:51789-52234 7.43e-01 100 chrXII:167869-168197 1.49e-08 7_[+1(1.79e-12)]_64 chrXV:1027926-1028265 3.46e-01 100 chrXIV:352732-352889 1.39e-01 100 chrXII:921243-921683 9.03e-01 100 chrXIII:120564-121004 5.58e-01 100 chrXIII:499454-499848 3.22e-01 100 chrXII:253095-253535 3.83e-01 100 chrI:139000-139333 7.98e-02 100 chrII:563402-563842 6.07e-01 100 chrV:42131-42435 3.62e-01 100 chrXI:382676-383116 4.30e-01 100 chrXIII:701867-702307 5.67e-02 100 chrIV:1075357-1075702 4.16e-15 [-2(2.15e-11)]_8_[+3(4.23e-11)]_42 chrIV:127119-127559 2.47e-01 100 chrXII:611674-612039 2.05e-01 100 chrXVI:376906-377346 9.84e-01 100 chrXV:678902-679131 8.03e-01 100 chrVI:210518-210866 1.04e-01 100 chrII:306917-307357 9.91e-01 100 chrIV:437626-437948 5.70e-08 40_[-1(1.79e-12)]_31 chrXIII:388392-388597 2.12e-01 100 chrVIII:120498-120696 2.25e-01 100 chrV:69035-69406 1.08e-02 41_[+1(4.87e-05)]_30 chrIV:384248-384688 4.05e-01 100 chrI:181001-181383 3.19e-05 5_[-1(2.50e-09)]_66 chrVIII:175093-175363 5.52e-01 100 chrIX:98390-98503 8.90e-01 100 chrVII:227769-228209 9.68e-01 100 chrXV:832430-832745 8.65e-01 100 chrXII:812000-812440 6.24e-01 100 chrVIII:170863-171303 5.21e-01 100 chrVIII:149015-149159 2.21e-01 100 chrIV:434188-434445 6.75e-18 5_[-2(6.14e-11)]_[+1(5.31e-14)]_36 chrXVI:303510-303892 3.12e-01 100 chrXI:163865-164305 3.16e-01 100 chrIX:127656-128096 5.41e-01 100 chrXI:246306-246746 9.00e-01 100 chrVI:82977-83537 8.26e-01 100 chrIX:427146-427852 9.36e-01 100 chrXIV:229766-230120 5.80e-01 100 chrXV:79838-80084 3.67e-01 100 chrIV:472498-472938 6.04e-01 100 chrXII:448442-448873 2.97e-07 50_[-2(1.69e-11)]_20 chrXII:1018234-1018466 2.65e-01 100 chrIV:410208-410578 3.85e-14 41_[-1(5.26e-10)]_[+2(1.18e-10)] chrVII:533989-534197 9.99e-01 100 chrIX:317101-317275 2.37e-01 100 chrII:642893-643202 5.24e-06 17_[-2(1.00e-08)]_53 chrXIII:797858-798298 4.73e-01 100 chrXVI:577663-578103 3.20e-01 100 chrVII:480392-480691 9.68e-01 100 chrV:23516-23880 1.80e-01 100 chrXII:254568-255008 5.66e-02 64_[+2(4.79e-05)]_6 chrVII:316933-317373 2.45e-01 100 chrVII:882439-883412 6.75e-01 100 chrVII:651-1091 6.78e-01 100 chrIV:386496-386860 6.22e-01 100 chrVII:641248-641688 2.88e-02 62_[+2(2.48e-05)]_8 chrVII:766138-766507 3.06e-01 100 chrXVI:435795-436123 3.51e-01 100 chrIX:177623-177976 7.19e-01 100 chrII:405715-406135 2.38e-07 36_[+2(6.86e-11)]_34 chrVII:878572-878967 5.38e-01 100 chrVI:31951-32233 9.28e-01 100 chrXVI:744133-744470 1.47e-05 66_[+2(1.14e-08)]_4 chrV:167184-167624 1.00e+00 100 chrXIII:352142-352435 2.40e-06 47_[-1(4.78e-10)]_24 chrVIII:134192-134509 1.66e-14 27_[-3(8.44e-10)]_7_[+2(1.69e-11)]_\ 16 chrXI:430658-431098 4.59e-01 100 chrVII:278292-278624 8.67e-01 100 chrII:680326-680999 9.86e-01 100 chrII:645021-645327 5.13e-08 49_[-3(6.92e-11)]_31 chrXII:348139-348489 2.04e-01 100 chrVII:56709-57149 4.33e-01 100 chrIV:915941-916183 5.98e-01 100 chrIV:929024-929464 4.09e-01 100 chrXVI:745524-745964 6.96e-01 100 chrXII:645906-646122 2.34e-01 100 chrVII:609413-610127 5.98e-01 100 chrXIII:551400-551755 6.66e-01 100 chrIV:83412-83717 1.35e-09 66_[+2(1.46e-12)]_4 chrVIII:381435-382073 9.26e-01 100 chrXII:368114-368554 5.09e-02 100 chrII:226942-227254 6.82e-09 32_[-1(1.79e-12)]_39 chrXII:951424-951575 7.00e-01 100 chrII:197345-197635 2.86e-07 60_[-1(5.81e-11)]_11 chrX:90114-90214 8.70e-01 100 chrIV:1269030-1269470 6.76e-01 100 chrXIII:761816-762200 2.79e-01 100 chrXII:673850-674173 3.74e-01 100 chrXIV:567982-568269 8.98e-02 100 chrVIII:411221-411668 4.45e-01 100 chrV:341375-341815 2.27e-01 100 chrXII:710663-710852 6.84e-01 100 chrXIII:253346-253612 3.68e-01 100 chrX:122031-122131 9.36e-01 100 chrXI:556050-556490 9.95e-01 100 chrVII:738958-739322 4.80e-17 38_[-1(5.81e-11)]_[+2(2.53e-13)]_3 chrXI:364828-365212 9.12e-03 67_[+1(7.48e-06)]_4 chrVIII:382953-383292 7.87e-01 100 chrXII:952814-952937 1.64e-01 100 chrI:151500-151701 5.60e-01 100 chrXII:875226-875599 1.73e-06 19_[-1(1.53e-09)]_52 chrXII:857178-857332 1.16e-01 100 chrXI:355371-355737 2.77e-01 100 chrXVI:377948-378388 8.88e-01 100 chrXV:217873-218313 5.23e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************