******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MCM1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrXIV:96078-96512 1.0000 100 chrV:424850-425067 1.0000 100 chrXII:638485-639067 1.0000 100 chrII:9458-9758 1.0000 100 chrXII:837797-839087 1.0000 100 chrXI:518827-519353 1.0000 100 chrVII:738972-739309 1.0000 100 chrXV:1028352-1028808 1.0000 100 chrIV:428109-428565 1.0000 100 chrXI:46362-46653 1.0000 100 chrXIII:253357-253609 1.0000 100 chrXIV:442867-443370 1.0000 100 chrXVI:819331-819755 1.0000 100 chrIV:1175657-1176062 1.0000 100 chrXVI:746003-746459 1.0000 100 chrXII:426976-427294 1.0000 100 chrXI:567107-567563 1.0000 100 chrIX:370233-370580 1.0000 100 chrXV:900074-900530 1.0000 100 chrX:233764-233864 1.0000 100 chrXIV:63656-63909 1.0000 100 chrXII:818473-818793 1.0000 100 chrVII:454476-454904 1.0000 100 chrIII:137936-138114 1.0000 100 chrIV:1466978-1467434 1.0000 100 chrVII:702811-703251 1.0000 100 chrXVI:74254-74710 1.0000 100 chrXVI:377919-378375 1.0000 100 chrXVI:40323-40566 1.0000 100 chrII:413761-414217 1.0000 100 chrXI:612294-612750 1.0000 100 chrV:176948-177286 1.0000 100 chrXVI:746220-746676 1.0000 100 chrV:77578-77972 1.0000 100 chrXVI:56069-56427 1.0000 100 chrIV:1268976-1269432 1.0000 100 chrVII:700484-701222 1.0000 100 chrXII:819998-820454 1.0000 100 chrXI:84057-84360 1.0000 100 chrVIII:114908-115364 1.0000 100 chrX:74059-74159 1.0000 100 chrXV:444845-445857 1.0000 100 chrXV:216343-216601 1.0000 100 chrXV:487419-487619 1.0000 100 chrXIII:732824-733280 1.0000 100 chrXV:868561-869017 1.0000 100 chrVIII:555104-555560 1.0000 100 chrVII:481793-482619 1.0000 100 chrIV:1233754-1234028 1.0000 100 chrIV:1237241-1237399 1.0000 100 chrXVI:700292-700748 1.0000 100 chrXIII:267974-268266 1.0000 100 chrIV:927392-927848 1.0000 100 chrXIII:123251-123707 1.0000 100 chrV:117756-118246 1.0000 100 chrXIV:87319-87769 1.0000 100 chrXV:80929-81096 1.0000 100 chrXV:980554-980904 1.0000 100 chrXIII:667883-668339 1.0000 100 chrVIII:382992-383264 1.0000 100 chrVII:148341-148549 1.0000 100 chrVII:311067-312119 1.0000 100 chrX:531671-531771 1.0000 100 chrVIII:451400-452993 1.0000 100 chrXII:797002-797352 1.0000 100 chrI:181007-181382 1.0000 100 chrXI:140874-141208 1.0000 100 chrII:168544-169000 1.0000 100 chrVII:426947-427403 1.0000 100 chrIII:138077-138303 1.0000 100 chrX:703344-703444 1.0000 100 chrI:71953-72704 1.0000 100 chrXI:558757-559213 1.0000 100 chrXV:620516-620819 1.0000 100 chrXVI:622450-622818 1.0000 100 chrXVI:338766-339077 1.0000 100 chrXI:163831-164287 1.0000 100 chrXV:228173-228499 1.0000 100 chrV:306466-306922 1.0000 100 chrXII:875211-875594 1.0000 100 chrXI:430976-431432 1.0000 100 chrVII:667799-668079 1.0000 100 chrIV:1492135-1492591 1.0000 100 chrX:355221-355321 1.0000 100 chrIV:1251628-1252084 1.0000 100 chrII:228652-229108 1.0000 100 chrIV:916627-917083 1.0000 100 chrVII:57354-57810 1.0000 100 chrXV:779777-780937 1.0000 100 chrIX:248680-249053 1.0000 100 chrVII:365555-365783 1.0000 100 chrII:301164-301428 1.0000 100 chrVII:437218-437674 1.0000 100 chrIV:519644-519875 1.0000 100 chrIV:308249-308705 1.0000 100 chrVIII:115987-116346 1.0000 100 chrVII:422914-423349 1.0000 100 chrVII:277956-278421 1.0000 100 chrX:139225-139325 1.0000 100 chrXVI:406281-406435 1.0000 100 chrI:72602-72876 1.0000 100 chrXVI:869208-869664 1.0000 100 chrV:269138-269594 1.0000 100 chrIV:230418-230874 1.0000 100 chrVII:706960-707207 1.0000 100 chrVI:95656-96112 1.0000 100 chrXIV:577247-577373 1.0000 100 chrIV:1360538-1360994 1.0000 100 chrI:143268-143474 1.0000 100 chrXII:784189-784580 1.0000 100 chrXV:663699-664020 1.0000 100 chrII:642926-643221 1.0000 100 chrX:115827-115927 1.0000 100 chrIV:914519-914975 1.0000 100 chrXII:260107-260563 1.0000 100 chrV:511706-512162 1.0000 100 chrXI:517807-518151 1.0000 100 chrV:51699-52155 1.0000 100 chrVII:120957-121209 1.0000 100 chrXII:65363-65819 1.0000 100 chrVI:95433-95889 1.0000 100 chrII:645014-645342 1.0000 100 chrXV:159331-160175 1.0000 100 chrV:305878-306106 1.0000 100 chrII:604631-605087 1.0000 100 chrXIII:557542-557998 1.0000 100 chrXI:589802-590258 1.0000 100 chrVI:83940-84250 1.0000 100 chrVII:534894-535138 1.0000 100 chrXV:1028275-1028479 1.0000 100 chrXV:254503-254959 1.0000 100 chrXIII:880534-880884 1.0000 100 chrXIII:162437-162627 1.0000 100 chrXIII:671527-671983 1.0000 100 chrII:197341-197636 1.0000 100 chrII:332413-332660 1.0000 100 chrIV:1489122-1489716 1.0000 100 chrXVI:407077-407533 1.0000 100 chrXIV:102572-102964 1.0000 100 chrI:142523-143140 1.0000 100 chrV:379925-380381 1.0000 100 chrIV:914162-914502 1.0000 100 chrXII:637136-637868 1.0000 100 chrXIII:372372-372614 1.0000 100 chrIV:437606-437957 1.0000 100 chrXVI:75694-76150 1.0000 100 chrX:197218-197318 1.0000 100 chrVII:398963-399193 1.0000 100 chrV:85158-85433 1.0000 100 chrIV:218292-218748 1.0000 100 chrII:235355-235811 1.0000 100 chrV:140559-140780 1.0000 100 chrV:135297-135626 1.0000 100 chrII:165141-165423 1.0000 100 chrXII:781569-781767 1.0000 100 chrXIII:259049-259387 1.0000 100 chrXIII:297005-298833 1.0000 100 chrV:322425-322715 1.0000 100 chrXV:925034-925490 1.0000 100 chrXIV:726059-726368 1.0000 100 chrXV:113665-113986 1.0000 100 chrVII:227630-227803 1.0000 100 chrXV:680504-680960 1.0000 100 chrV:85697-87003 1.0000 100 chrV:362794-363250 1.0000 100 chrXVI:823886-824342 1.0000 100 chrXII:499358-499641 1.0000 100 chrII:305239-305695 1.0000 100 chrII:477098-477394 1.0000 100 chrXV:624024-624480 1.0000 100 chrIX:174924-175174 1.0000 100 chrXII:954185-954641 1.0000 100 chrIV:914936-915177 1.0000 100 chrXII:514037-514493 1.0000 100 chrXIV:516782-517002 1.0000 100 chrX:517718-517818 1.0000 100 chrIV:768360-768816 1.0000 100 chrVIII:96445-96901 1.0000 100 chrXI:162360-162719 1.0000 100 chrX:349013-349113 1.0000 100 chrVII:845461-845889 1.0000 100 chrXV:110553-110772 1.0000 100 chrIV:117292-117492 1.0000 100 chrII:159673-160129 1.0000 100 chrXII:922247-922444 1.0000 100 chrIV:356288-356480 1.0000 100 chrV:396339-396470 1.0000 100 chrX:126418-126518 1.0000 100 chrXII:793725-794236 1.0000 100 chrXV:605417-605873 1.0000 100 chrXII:1012160-1012364 1.0000 100 chrVII:559347-559803 1.0000 100 chrIV:915890-916096 1.0000 100 chrXII:214785-215096 1.0000 100 chrXIII:728853-729309 1.0000 100 chrXIV:529481-529879 1.0000 100 chrIV:520821-521145 1.0000 100 chrV:396874-397330 1.0000 100 chrXV:832272-832687 1.0000 100 chrXII:198817-199701 1.0000 100 chrXII:499059-499358 1.0000 100 chrIV:434153-434443 1.0000 100 chrIV:1236493-1236949 1.0000 100 chrX:122364-122464 1.0000 100 chrXII:721834-722290 1.0000 100 chrVI:167302-167641 1.0000 100 chrX:123371-123471 1.0000 100 chrVII:641212-641668 1.0000 100 chrVIII:147771-148227 1.0000 100 chrVIII:132777-133233 1.0000 100 chrXIII:223400-223856 1.0000 100 chrXII:232048-234046 1.0000 100 chrXII:897923-898379 1.0000 100 chrXII:712324-712780 1.0000 100 chrIV:1245592-1246048 1.0000 100 chrVII:541683-542055 1.0000 100 chrXV:903820-904277 1.0000 100 chrXIV:495272-495459 1.0000 100 chrV:443116-443425 1.0000 100 chrXIV:253369-253825 1.0000 100 chrXIV:569787-570094 1.0000 100 chrXI:431980-432436 1.0000 100 chrXV:978810-979088 1.0000 100 chrXIV:352614-353070 1.0000 100 chrXV:274499-274861 1.0000 100 chrIX:255355-255705 1.0000 100 chrXV:93243-93433 1.0000 100 chrXII:283083-283842 1.0000 100 chrIV:1489954-1490440 1.0000 100 chrIV:980861-981170 1.0000 100 chrXIII:279864-280320 1.0000 100 chrXII:440670-441126 1.0000 100 chrIV:1493840-1494296 1.0000 100 chrX:422791-422891 1.0000 100 chrXV:908524-908980 1.0000 100 chrX:204568-204668 1.0000 100 chrIV:340556-341012 1.0000 100 chrVI:82215-82547 1.0000 100 chrXVI:67176-67632 1.0000 100 chrXIV:585703-586335 1.0000 100 chrXIII:754382-754838 1.0000 100 chrVIII:388812-389005 1.0000 100 chrIII:138672-138971 1.0000 100 chrXVI:303496-303736 1.0000 100 chrIV:410237-410564 1.0000 100 chrV:138507-138994 1.0000 100 chrXII:720597-721053 1.0000 100 chrII:680407-680730 1.0000 100 chrXIII:760448-760904 1.0000 100 chrXII:263604-263745 1.0000 100 chrXIII:220122-220578 1.0000 100 chrIV:117730-118186 1.0000 100 chrII:326694-327024 1.0000 100 chrIV:489845-490301 1.0000 100 chrII:373619-374075 1.0000 100 chrXIV:675749-676135 1.0000 100 chrXII:975910-976199 1.0000 100 chrIV:946115-946570 1.0000 100 chrXI:334503-334959 1.0000 100 chrV:236344-236800 1.0000 100 chrXIV:301200-301656 1.0000 100 chrIV:45494-45709 1.0000 100 chrVII:823338-823692 1.0000 100 chrXIV:138926-139382 1.0000 100 chrV:386130-386509 1.0000 100 chrV:363004-363460 1.0000 100 chrXVI:821793-822019 1.0000 100 chrIII:30526-30796 1.0000 100 chrXIV:575329-575704 1.0000 100 chrVI:90587-91002 1.0000 100 chrV:423209-423403 1.0000 100 chrVII:557050-557506 1.0000 100 chrXII:243141-243597 1.0000 100 chrVI:157825-158170 1.0000 100 chrIII:228788-229021 1.0000 100 chrXV:594246-594566 1.0000 100 chrX:227825-227925 1.0000 100 chrXIII:552965-553174 1.0000 100 chrVII:883753-883867 1.0000 100 chrX:538447-538547 1.0000 100 chrXIV:229956-230150 1.0000 100 chrVIII:411196-411667 1.0000 100 chrXIII:879174-879630 1.0000 100 chrXVI:435769-436120 1.0000 100 chrXVI:280773-281446 1.0000 100 chrXVI:795192-795648 1.0000 100 chrX:156472-156572 1.0000 100 chrV:431050-431523 1.0000 100 chrXII:637826-638347 1.0000 100 chrIV:1236854-1237021 1.0000 100 chrXIV:335533-335989 1.0000 100 chrII:605827-606063 1.0000 100 chrII:350655-350984 1.0000 100 chrXV:300935-301314 1.0000 100 chrXIV:68418-68745 1.0000 100 chrVII:661580-661913 1.0000 100 chrXI:326169-327345 1.0000 100 chrXI:430759-431215 1.0000 100 chrXVI:700055-700288 1.0000 100 chrV:151965-152131 1.0000 100 chrII:625334-625752 1.0000 100 chrVIII:146082-146463 1.0000 100 chrIII:168214-168558 1.0000 100 chrVI:64621-65077 1.0000 100 chrXII:515369-515825 1.0000 100 chrXI:379663-380119 1.0000 100 chrXIII:420463-420813 1.0000 100 chrIX:317636-318092 1.0000 100 chrVIII:127217-127673 1.0000 100 chrIX:69119-69575 1.0000 100 chrXIII:747795-748119 1.0000 100 chrVII:544467-544830 1.0000 100 chrV:465524-465980 1.0000 100 chrXIV:663733-664048 1.0000 100 chrX:74761-74861 1.0000 100 chrXIV:172599-173055 1.0000 100 chrXII:855903-856359 1.0000 100 chrI:66960-67416 1.0000 100 chrXIII:550622-551078 1.0000 100 chrXI:618788-619244 1.0000 100 chrV:68925-69483 1.0000 100 chrVII:845461-845881 1.0000 100 chrXII:780838-781063 1.0000 100 chrIX:231855-232311 1.0000 100 chrIX:232619-233028 1.0000 100 chrX:291066-291166 1.0000 100 chrXIII:510942-511262 1.0000 100 chrV:492256-492577 1.0000 100 chrVI:137322-137686 1.0000 100 chrVII:401456-401591 1.0000 100 chrIV:802619-802969 1.0000 100 chrXV:91980-92189 1.0000 100 chrXV:323315-323771 1.0000 100 chrX:212928-213028 1.0000 100 chrVII:1050275-1050466 1.0000 100 chrXI:163740-164016 1.0000 100 chrII:45046-45355 1.0000 100 chrXII:796495-796775 1.0000 100 chrIII:142607-142935 1.0000 100 chrIX:45817-46263 1.0000 100 chrX:415859-415959 1.0000 100 chrX:140993-141093 1.0000 100 chrXIV:417767-418223 1.0000 100 chrVII:364803-365259 1.0000 100 chrX:119893-119993 1.0000 100 chrVIII:554360-554592 1.0000 100 chrXV:900290-900746 1.0000 100 chrXIV:745660-746248 1.0000 100 chrXV:571800-572124 1.0000 100 chrII:226930-227297 1.0000 100 chrXV:866673-866871 1.0000 100 chrIV:721876-722102 1.0000 100 chrVII:664781-665237 1.0000 100 chrIX:97227-97683 1.0000 100 chrXVI:860218-860592 1.0000 100 chrVII:748927-749383 1.0000 100 chrVIII:282307-282763 1.0000 100 chrII:36255-36587 1.0000 100 chrXVI:880130-880524 1.0000 100 chrXIV:628717-628951 1.0000 100 chrXII:722819-723275 1.0000 100 chrXVI:718567-719075 1.0000 100 chrXVI:67047-67366 1.0000 100 chrIV:491584-492040 1.0000 100 chrXI:93776-94033 1.0000 100 chrIV:599733-600094 1.0000 100 chrXV:988941-989397 1.0000 100 chrXI:302773-303093 1.0000 100 chrXVI:173061-173235 1.0000 100 chrXV:882248-882402 1.0000 100 chrII:311490-311894 1.0000 100 chrXI:109858-110314 1.0000 100 chrVII:916283-916739 1.0000 100 chrVII:876217-876608 1.0000 100 chrX:73729-73829 1.0000 100 chrXIII:768261-768442 1.0000 100 chrXV:448887-449240 1.0000 100 chrXI:578809-579192 1.0000 100 chrXIV:568231-568382 1.0000 100 chrII:88947-89403 1.0000 100 chrIV:129998-130266 1.0000 100 chrV:131018-131317 1.0000 100 chrI:141674-141874 1.0000 100 chrVII:405423-405688 1.0000 100 chrXV:281990-282338 1.0000 100 chrVII:365093-365549 1.0000 100 chrVII:599494-599950 1.0000 100 chrXIV:62099-62555 1.0000 100 chrXVI:718967-719194 1.0000 100 chrVII:289282-289706 1.0000 100 chrXIII:362915-363235 1.0000 100 chrXV:976248-976596 1.0000 100 chrV:425032-425207 1.0000 100 chrII:228414-228870 1.0000 100 chrVII:185570-185925 1.0000 100 chrXVI:810568-810806 1.0000 100 chrXIII:774283-774739 1.0000 100 chrXII:789804-790046 1.0000 100 chrXI:334385-334545 1.0000 100 chrVI:89782-90238 1.0000 100 chrV:424010-424187 1.0000 100 chrXV:759225-759681 1.0000 100 chrIV:1362338-1362624 1.0000 100 chrII:606351-606807 1.0000 100 chrVII:787120-787315 1.0000 100 chrX:121379-121479 1.0000 100 chrV:424045-424501 1.0000 100 chrXII:1002357-1002813 1.0000 100 chrXII:167866-168171 1.0000 100 chrX:59003-59103 1.0000 100 chrVII:878550-878981 1.0000 100 chrXV:759122-759338 1.0000 100 chrIV:555667-556074 1.0000 100 chrXV:409291-409747 1.0000 100 chrVI:210525-210857 1.0000 100 chrXV:493831-494287 1.0000 100 chrX:390925-391025 1.0000 100 chrXV:160404-160584 1.0000 100 chrI:171614-172041 1.0000 100 chrII:299968-300424 1.0000 100 chrII:592191-592647 1.0000 100 chrXII:819593-820049 1.0000 100 chrXV:87406-87862 1.0000 100 chrVII:736158-736530 1.0000 100 chrXII:348176-348632 1.0000 100 chrXIII:762487-762943 1.0000 100 chrXIII:163395-163851 1.0000 100 chrIV:308488-308944 1.0000 100 chrXII:1028998-1029454 1.0000 100 chrIII:78765-79094 1.0000 100 chrVII:611497-611888 1.0000 100 chrVIII:466820-467131 1.0000 100 chrXI:336460-336916 1.0000 100 chrXVI:452175-452631 1.0000 100 chrIV:230393-230609 1.0000 100 chrX:378201-378301 1.0000 100 chrVII:556215-556671 1.0000 100 chrXIV:568012-568302 1.0000 100 chrXII:837797-839150 1.0000 100 chrVIII:62594-62939 1.0000 100 chrVII:1057349-1057805 1.0000 100 chrX:453727-453827 1.0000 100 chrXVI:210104-210423 1.0000 100 chrVII:961247-961703 1.0000 100 chrXII:759132-759410 1.0000 100 chrXIV:174254-174393 1.0000 100 chrIII:127570-127890 1.0000 100 chrXIV:331898-332354 1.0000 100 chrV:207377-207833 1.0000 100 chrXI:38919-39375 1.0000 100 chrXI:259502-259765 1.0000 100 chrXI:74446-74810 1.0000 100 chrXIII:379251-379561 1.0000 100 chrV:267718-268174 1.0000 100 chrXIII:183846-183989 1.0000 100 chrXII:459489-460176 1.0000 100 chrII:301295-301751 1.0000 100 chrXVI:95113-95439 1.0000 100 chrII:88133-88592 1.0000 100 chrVII:774180-774656 1.0000 100 chrVII:798668-799124 1.0000 100 chrXII:691192-691608 1.0000 100 chrXV:778379-778835 1.0000 100 chrVII:440588-440983 1.0000 100 chrXIV:631701-632055 1.0000 100 chrXII:673927-674133 1.0000 100 chrX:68963-69063 1.0000 100 chrXIV:415600-416056 1.0000 100 chrVIII:35440-35927 1.0000 100 chrII:478900-479219 1.0000 100 chrXV:288020-288377 1.0000 100 chrXIV:493523-493979 1.0000 100 chrXII:369210-370084 1.0000 100 chrVII:648046-648502 1.0000 100 chrX:75452-75552 1.0000 100 chrXII:794149-795042 1.0000 100 chrX:354093-354193 1.0000 100 chrXVI:109058-109514 1.0000 100 chrXIII:301670-302126 1.0000 100 chrVII:779479-779798 1.0000 100 chrIV:1270325-1270464 1.0000 100 chrV:221524-221762 1.0000 100 chrX:663829-663929 1.0000 100 chrVII:1004102-1004396 1.0000 100 chrIV:626498-626954 1.0000 100 chrXII:406944-407387 1.0000 100 chrIV:382673-383129 1.0000 100 chrXVI:830031-830487 1.0000 100 chrXIV:230173-230420 1.0000 100 chrV:302883-303339 1.0000 100 chrVII:115350-115694 1.0000 100 chrXIV:576701-577157 1.0000 100 chrXIV:88960-89689 1.0000 100 chrVII:561511-561760 1.0000 100 chrXI:520205-520321 1.0000 100 chrVIII:237765-238086 1.0000 100 chrXIII:426300-426756 1.0000 100 chrII:393188-393644 1.0000 100 chrXII:899122-899578 1.0000 100 chrXIII:220934-221142 1.0000 100 chrVIII:134185-134501 1.0000 100 chrXIII:551979-552435 1.0000 100 chrVIII:34866-35391 1.0000 100 chrXVI:581934-582246 1.0000 100 chrXVI:732025-732178 1.0000 100 chrIV:130647-130861 1.0000 100 chrV:469301-469595 1.0000 100 chrIV:118357-118813 1.0000 100 chrIV:1256904-1257258 1.0000 100 chrXII:806521-806834 1.0000 100 chrV:78429-78965 1.0000 100 chrXIII:169989-170434 1.0000 100 chrXI:46655-46970 1.0000 100 chrVII:439552-439828 1.0000 100 chrXIII:887233-887689 1.0000 100 chrV:434456-434784 1.0000 100 chrXI:630490-630712 1.0000 100 chrXIII:195952-196288 1.0000 100 chrXIV:500362-500801 1.0000 100 chrIV:1359507-1359722 1.0000 100 chrXVI:829107-829403 1.0000 100 chrIX:129881-130280 1.0000 100 chrV:354768-355161 1.0000 100 chrXIII:753418-753874 1.0000 100 chrXIII:288101-288557 1.0000 100 chrVIII:382268-382724 1.0000 100 chrVI:64518-64685 1.0000 100 chrVIII:104928-105384 1.0000 100 chrXI:106372-106828 1.0000 100 chrVIII:358370-358745 1.0000 100 chrXIV:339890-340346 1.0000 100 chrVII:545513-545969 1.0000 100 chrXV:725371-725827 1.0000 100 chrXV:304866-305104 1.0000 100 chrIV:1095260-1095614 1.0000 100 chrXIII:774594-775050 1.0000 100 chrVII:882434-883416 1.0000 100 chrV:288251-288676 1.0000 100 chrX:383219-383319 1.0000 100 chrIX:166048-166504 1.0000 100 chrIV:1352371-1352645 1.0000 100 chrXII:88055-88511 1.0000 100 chrXVI:282387-282511 1.0000 100 chrIV:1465967-1466120 1.0000 100 chrXIII:761814-761998 1.0000 100 chrXV:967975-968343 1.0000 100 chrXV:60488-60944 1.0000 100 chrIV:1237366-1237822 1.0000 100 chrI:72864-73182 1.0000 100 chrXII:460380-460876 1.0000 100 chrII:60850-61306 1.0000 100 chrXV:723341-723563 1.0000 100 chrIV:359433-359822 1.0000 100 chrXV:438457-438873 1.0000 100 chrVIII:80833-81289 1.0000 100 chrXV:436369-436851 1.0000 100 chrXIV:721012-721468 1.0000 100 chrVII:366153-366481 1.0000 100 chrXII:348375-348831 1.0000 100 chrVI:226582-226925 1.0000 100 chrXII:644970-645282 1.0000 100 chrXIII:504896-505139 1.0000 100 chrIV:568733-569117 1.0000 100 chrVII:148426-148882 1.0000 100 chrXIV:716187-716456 1.0000 100 chrXII:92379-92769 1.0000 100 chrX:374264-374364 1.0000 100 chrVIII:54390-54642 1.0000 100 chrVIII:375378-375721 1.0000 100 chrVII:480452-481224 1.0000 100 chrXII:201730-202320 1.0000 100 chrV:122266-122722 1.0000 100 chrVIII:126535-126991 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MCM1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MCM1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MCM1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 573 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 57300 N= 573 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.299 C 0.201 G 0.201 T 0.299 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--MCM1/background): A 0.308 C 0.192 G 0.192 T 0.308 ******************************************************************************** ******************************************************************************** MOTIF DDSSCYYWWMCMACTRVGCCA MEME-1 width = 21 sites = 126 llr = 1645 E-value = 8.1e-243 ******************************************************************************** -------------------------------------------------------------------------------- Motif DDSSCYYWWMCMACTRVGCCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 33221:1355:3a::433::a pos.-specific C 2253634115a5:8:13:a7: probability G 3335221:1::1:::347::: matrix T 22::25463::::2a2:::3: bits 2.4 * * 2.1 * * 1.9 * * 1.7 * * * * Relative 1.4 * *** * * Entropy 1.2 * *** **** (18.8 bits) 1.0 * *** **** 0.7 * ** *** ***** 0.5 *** * ****** ***** 0.2 ******************* 0.0 --------------------- Multilevel GACGCTTTAACCACTAGGCCA consensus AGGC CCATC A T GAA T sequence T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DDSSCYYWWMCMACTRVGCCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrX:59003-59103 + 30 4.15e-10 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCTTC chrIV:434153-434443 + 61 4.15e-10 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCTTC chrXII:214785-215096 + 38 4.15e-10 TTGCAAGGGA AGCGCGCTACCAACTGCGCCA TGTGCCCTAA chrIX:174924-175174 - 39 4.15e-10 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCTCG chrXV:113665-113986 - 34 4.15e-10 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCTAA chrVIII:115987-116346 + 36 4.15e-10 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCTCT chrIX:248680-249053 - 41 5.32e-10 TTTCAAGTCT GTCGCCTTAACCACTCGGCCA TAGTGCCTAA chrXVI:880130-880524 + 65 1.36e-09 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCATT chrXIV:569787-570094 + 23 1.36e-09 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCACT chrV:443116-443425 + 28 1.36e-09 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCAAA chrII:197341-197636 - 63 1.36e-09 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCTTG chrXVI:819331-819755 - 43 1.36e-09 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCATT chrVII:738972-739309 - 39 1.36e-09 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCTAT chrXV:274499-274861 - 50 1.70e-09 ATAGCAGGGC ATCGCCTTAACCACTCGGCCA CTGGGACACG chrXII:784189-784580 - 27 1.70e-09 AATAGCAGGC ATCGCCTTAACCACTCGGCCA CTGGGACGGT chrVIII:146082-146463 + 65 2.11e-09 ATGCTAAGGG AGCGCGCTACCGACTACGCCA CACGCCCTGA chrIV:410237-410564 - 36 2.11e-09 ATGCTAAGGG AGCGCGCTACCGACTACGCCA CACGCCCAAT chrX:197218-197318 + 67 2.11e-09 ATGCTAAGGG AGCGCGCTACCGACTACGCCA CACGCCCTAA chrXI:517807-518151 - 66 2.11e-09 ATGCTAAGGG AGCGCGCTACCGACTACGCCA CACGCCCATA chrXII:167866-168171 + 30 3.92e-09 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCATA chrII:226930-227297 - 19 3.92e-09 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCTCG chrIV:980861-981170 + 63 3.92e-09 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCTCA chrXIII:259049-259387 + 44 3.92e-09 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCATA chrIV:437606-437957 - 48 3.92e-09 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCTTA chrXV:438457-438873 - 35 4.79e-09 TTAAAAGCCG AACGCTCTACCAACTGAGCTA ACAAGGATGA chrIV:359433-359822 - 7 4.79e-09 TTAAAAGCCG AACGCTCTACCAACTGAGCTA ACAAGG chrVII:115350-115694 - 23 4.79e-09 TTAAAAGCCG AACGCTCTACCAACTGAGCTA ACAAGGATGA chrXI:578809-579192 - 22 4.79e-09 TTAAAAGCCG AACGCTCTACCAACTGAGCTA ACAAGGATGA chrXII:875211-875594 - 31 4.79e-09 TTAAAAGCCG AACGCTCTACCAACTGAGCTA ACAAGGATGA chrIV:1095260-1095614 + 47 2.04e-08 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AGTCCGCTAA chrVIII:358370-358745 + 35 2.04e-08 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTTA chrVIII:237765-238086 + 37 2.04e-08 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTTA chrVII:440588-440983 + 45 2.04e-08 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCATA chrII:36255-36587 - 34 2.04e-08 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTTA chrVI:157825-158170 + 33 2.04e-08 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTTC chrXVI:622450-622818 + 20 2.04e-08 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCATA chrXI:74446-74810 - 53 2.41e-08 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCTAA chrIII:127570-127890 - 43 2.41e-08 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCATT chrXVI:810568-810806 - 46 2.41e-08 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCGCA chrVI:137322-137686 + 78 2.41e-08 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TG chrXII:975910-976199 + 25 2.41e-08 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCTTT chrXIV:102572-102964 - 5 2.41e-08 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGA chrXV:228173-228499 - 52 2.41e-08 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCTAA chrV:492256-492577 + 31 3.32e-08 TTCGTAGCCA GACGCCGTGACCATTGGGCCA CGAGGAATAG chrX:233764-233864 - 61 3.32e-08 TTCGTAGCCA GACGCCGTGACCATTGGGCCA CGAGGAACAA chrXIV:726059-726368 + 27 4.52e-08 CTTAAGTCTG CCGCCTTAGACCACTCGGCCA ACCCTCCAAA chrIV:519644-519875 - 41 4.52e-08 CTTAAGTCTG CCGCCTTAGACCACTCGGCCA ACCCTCCGTA chrII:9458-9758 - 32 4.52e-08 CTTAAGTCTG CCGCCTTAGACCACTCGGCCA ACCCTCCACG chrVI:226582-226925 + 30 6.09e-08 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCATT chrIV:1352371-1352645 + 53 6.09e-08 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTAT chrXVI:581934-582246 - 29 6.09e-08 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTCT chrVII:185570-185925 + 62 6.09e-08 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTAT chrVII:876217-876608 - 39 6.09e-08 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTAT chrV:135297-135626 + 59 6.09e-08 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTTT chrX:390925-391025 + 23 1.40e-07 TTATGAGACT GACGCTCTTCCTACTGAGCTA CTGAAGCACT chrXV:976248-976596 - 56 1.40e-07 TTATGAGACT GACGCTCTTCCTACTGAGCTA CTGAAGCGCA chrX:422791-422891 - 54 1.40e-07 TTATGAGACT GACGCTCTTCCTACTGAGCTA CTGAAGCATA chrIV:1175657-1176062 - 27 1.40e-07 TTATGAGACT GACGCTCTTCCTACTGAGCTA CTGAAGCTTT chrXII:92379-92769 - 31 5.20e-07 CGCCCAAAGC GAGAATCATACCACTAGACCA CACGCCCTTA chrXIII:195952-196288 + 73 5.20e-07 CGCCCAAAGC GAGAATCATACCACTAGACCA CACGCCC chrXIV:568012-568302 - 15 5.20e-07 CGCCCAAAGC GAGAATCATACCACTAGACCA CACGCCCGAT chrXV:300935-301314 - 30 5.20e-07 CGCCCAAAGC GAGAATCATACCACTAGACCA CACGCCCGAT chrXV:980554-980904 - 11 5.20e-07 CGCCCAAAGC GAGAATCATACCACTAGACCA CACGCCCATA chrXI:84057-84360 - 57 5.79e-07 CTTAAGTCTG CCGCATTAGACCACTCGGCCA ACCCTCCATA chrIV:1256904-1257258 + 21 6.43e-07 TTGGGAAGCA TGAATTCTAACCACTGAACCA CTTTCGCTAA chrXIII:183846-183989 + 74 8.73e-07 GATGGCAACG TTGGATTTTACCACTAAACCA CTTGCG chrXV:281990-282338 - 57 8.73e-07 GATGGCAACG TTGGATTTTACCACTAAACCA CTTGCGCGCT chrXVI:860218-860592 - 31 8.73e-07 GATGGCAACG TTGGATTTTACCACTAAACCA CTTGCGCTTG chrIII:142607-142935 + 23 8.73e-07 GATGGCAACG TTGGATTTTACCACTAAACCA CTTGCGCTAG chrVII:845461-845881 - 35 8.73e-07 GATGGCAACG TTGGATTTTACCACTAAACCA CTTGCGCTTG chrXV:594246-594566 + 42 8.73e-07 TTGGGAAGCA TAAATTCTAACCACTGAACCA CTTGCGCGTT chrVII:845461-845889 - 31 8.73e-07 GATGGCAACG TTGGATTTTACCACTAAACCA CTTGCGCTTG chrV:469301-469595 - 66 9.64e-07 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCAAT chrX:378201-378301 - 57 9.64e-07 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCTAT chrXIII:420463-420813 + 46 9.64e-07 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCTGT chrVII:823338-823692 - 24 9.64e-07 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCACT chrXIII:372372-372614 + 48 9.64e-07 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCAGG chrXV:663699-664020 + 49 9.64e-07 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCACT chrVII:422914-423349 - 18 1.06e-06 CTTGAATCAG GCGCCTTAGACCGCTCGGCCA AACAACCACT chrI:181007-181382 - 4 1.06e-06 CTTGAATCAG GCGCCTTAGACCGCTCGGCCA AAC chrX:354093-354193 - 35 1.17e-06 TACAGTCTTG CGCCTTAAACCAACTTGGCTA CCGAGAGTGA chrXV:288020-288377 - 51 1.17e-06 TACAGTCTTG CGCCTTAAACCAACTTGGCTA CCGAGAGAAG chrVI:210525-210857 + 39 1.17e-06 TACAGTCTTG CGCCTTAAACCAACTTGGCTA CCGAGAGTCG chrIV:946115-946570 - 27 1.17e-06 TACAGTCTTG CGCCTTAAACCAACTTGGCTA CCGAGAGTCG chrVI:167302-167641 - 23 1.17e-06 TACAGTCTTG CGCCTTAAACCAACTTGGCTA CCGAGAGTCG chrXI:46655-46970 + 17 1.84e-06 ATTACGAGTG CGATGCCTTACCACTTGGCCA AAAGGGCTGA chrX:538447-538547 - 27 2.01e-06 CTTAGGAGGG AGACGCGTTACCATTACGCCA ACGGAACCAA chrVII:1004102-1004396 - 24 2.59e-06 ATTACAAGTG CAACGCTCTACCACTAAGCTA AGGAGGCAAA chrVII:779479-779798 - 35 2.59e-06 TTGGAAGGGT GGGATGATAACCACTACACTA ACCGCCCGGG chrVIII:466820-467131 - 72 2.59e-06 TACAAGTG CAACGCTCTACCACTAAGCTA AGGAGGCTAA chrVII:661580-661913 - 60 2.59e-06 ATTACAAGTG CAACGCTCTACCACTAAGCTA AGGAGGCAAA chrXIV:96078-96512 + 40 2.59e-06 TTGGAAGGGT GGGATGATAACCACTACACTA ACCGCCCATG chrIV:768360-768816 + 62 2.81e-06 AACGATGTCG TAACCGTCAACAACTTCACCA AAGACAACAT chrXII:818473-818793 - 33 3.30e-06 ACCGGAAGAA TGCATGCTAACCATTGCACTA GAGGAGCATA chrVIII:134185-134501 - 35 3.85e-06 ATCAAAACCG AAAGTGATAACCACTACACTA TAGGACCGGA chrXIII:379251-379561 + 25 3.85e-06 AATTGGAGTC GAAAGCTCTACCATTGAGCCA CCGCTTCAAC chrVII:878550-878981 + 73 3.85e-06 AATTGGAGTC GAAAGCTCTACCATTGAGCCA CCGCTTC chrV:131018-131317 + 9 3.85e-06 CAAAACCG AAAGTGATAACCACTACACTA TAAAACCTCT chrXI:302773-303093 - 42 3.85e-06 AATTGGAGTC GAAAGCTCTACCATTGAGCCA CCGCTTCATC chrX:415859-415959 + 29 3.85e-06 AATTGGAGTC GAAAGCTCTACCATTGAGCCA CCGCTTCAAC chrIV:802619-802969 + 31 3.85e-06 ATCAAAACCG AAAGTGATAACCACTACACTA TAGGACCGAC chrIII:168214-168558 + 9 3.85e-06 CAAAACCG AAAGTGATAACCACTACACTA TAGGACCAGG chrII:350655-350984 - 65 3.85e-06 ATCAAAACCG AAAGTGATAACCACTACACTA TAAAACCCTT chrXVI:435769-436120 + 43 3.85e-06 ATTTGCAATC TGCTGCGCTACCACTGCGCCA TACGAGCTTT chrIV:520821-521145 - 46 3.85e-06 ATCAAAACCG AAAGTGATAACCACTACACTA TAGGACCCTA chrII:642926-643221 + 28 3.85e-06 ATTTGCAATC TGCTGCGCTACCACTGCGCCA TACGAGCTTT chrXVI:56069-56427 + 49 3.85e-06 AATTGGAGTC GAAAGCTCTACCATTGAGCCA CCGCTTCAAC chrXI:163740-164016 + 27 4.15e-06 CGGCGATCAT GACGGTCTTACCACTCAACAA GTCCTTGGCA chrII:326694-327024 + 29 4.82e-06 TGTAAAGGCG ACGTCTTGAACCACTGGACCA TTGGACCCGG chrV:78429-78965 - 74 5.57e-06 TTGTAC AAGGTTCTACCGACGACACCA TCGATGGACC chrXII:283083-283842 + 26 6.87e-06 TCTAAGAAGT GGGGTTTCACCAACTTGGACA GACCAGAATA chrX:374264-374364 + 25 8.41e-06 GCGACAAGCG CCCATTCTGACCATTAAACTA TCACGGAAGA chrXV:571800-572124 - 53 8.41e-06 GCGACAAGCG CCCATTCTGACCATTAAACTA TCACGGATTT chrVII:544467-544830 + 23 8.41e-06 GCGACAAGCG CCCATTCTGACCATTAAACTA TCACGGAAGA chrX:204568-204668 - 56 8.41e-06 GCGACAAGCG CCCATTCTGACCATTAAACTA TCACGGATTT chrX:355221-355321 - 60 8.41e-06 GCGACAAGCG CCCATTCTGACCATTAAACTA TCACGGAAGA chrXII:426976-427294 - 54 8.41e-06 GCGACAAGCG CCCATTCTGACCATTAAACTA TCACGGATAA chrIV:568733-569117 - 14 8.98e-06 ATTAGAAGTC AGACGCGTTGCCATTACGCCA CGCGAGCTAC chrVII:736158-736530 - 53 8.98e-06 ATTAGAAGTC AGACGCGTTGCCATTACGCCA CGCGAGCTAT chrXIII:747795-748119 + 29 8.98e-06 ATTAGAAGTC AGACGCGTTGCCATTACGCCA CGCGAGCTAG chrXI:162360-162719 + 42 8.98e-06 ATTAGAAGTC AGACGCGTTGCCATTACGCCA CGCGAGCTAA chrX:517718-517818 + 42 8.98e-06 GTTATGAGCC CTGCGCGCTTCCACTGCGCCA CGGCGCTTAA chrXVI:338766-339077 + 21 8.98e-06 GTTATGAGCC CTGCGCGCTTCCACTGCGCCA CGGCGCTGCT chrXIV:631701-632055 + 62 1.09e-05 CACCCTAAGC GAGAATCATACCTCTAGACCA CACGCCCGGT chrIII:138077-138303 - 7 1.23e-05 ATCTTCCTTG GAAGCCTTGACCTTTTGACCA TCGACC chrXI:618788-619244 + 16 1.39e-05 ATGGAAAGAT TGCACCCAGACAACTACACAA ATCTGTTAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DDSSCYYWWMCMACTRVGCCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:59003-59103 4.1e-10 29_[+1]_50 chrIV:434153-434443 4.1e-10 60_[+1]_19 chrXII:214785-215096 4.1e-10 37_[+1]_42 chrIX:174924-175174 4.1e-10 38_[-1]_41 chrXV:113665-113986 4.1e-10 33_[-1]_46 chrVIII:115987-116346 4.1e-10 35_[+1]_44 chrIX:248680-249053 5.3e-10 40_[-1]_39 chrXVI:880130-880524 1.4e-09 64_[+1]_15 chrXIV:569787-570094 1.4e-09 22_[+1]_57 chrV:443116-443425 1.4e-09 27_[+1]_52 chrII:197341-197636 1.4e-09 62_[-1]_17 chrXVI:819331-819755 1.4e-09 42_[-1]_37 chrVII:738972-739309 1.4e-09 38_[-1]_41 chrXV:274499-274861 1.7e-09 49_[-1]_30 chrXII:784189-784580 1.7e-09 26_[-1]_53 chrVIII:146082-146463 2.1e-09 64_[+1]_15 chrIV:410237-410564 2.1e-09 35_[-1]_44 chrX:197218-197318 2.1e-09 66_[+1]_13 chrXI:517807-518151 2.1e-09 65_[-1]_14 chrXII:167866-168171 3.9e-09 29_[+1]_50 chrII:226930-227297 3.9e-09 18_[-1]_61 chrIV:980861-981170 3.9e-09 62_[+1]_17 chrXIII:259049-259387 3.9e-09 43_[+1]_36 chrIV:437606-437957 3.9e-09 47_[-1]_32 chrXV:438457-438873 4.8e-09 34_[-1]_45 chrIV:359433-359822 4.8e-09 6_[-1]_73 chrVII:115350-115694 4.8e-09 22_[-1]_57 chrXI:578809-579192 4.8e-09 21_[-1]_58 chrXII:875211-875594 4.8e-09 30_[-1]_49 chrIV:1095260-1095614 2e-08 46_[+1]_33 chrVIII:358370-358745 2e-08 34_[+1]_45 chrVIII:237765-238086 2e-08 36_[+1]_43 chrVII:440588-440983 2e-08 44_[+1]_35 chrII:36255-36587 2e-08 33_[-1]_46 chrVI:157825-158170 2e-08 32_[+1]_47 chrXVI:622450-622818 2e-08 19_[+1]_60 chrXI:74446-74810 2.4e-08 52_[-1]_27 chrIII:127570-127890 2.4e-08 42_[-1]_37 chrXVI:810568-810806 2.4e-08 45_[-1]_34 chrVI:137322-137686 2.4e-08 77_[+1]_2 chrXII:975910-976199 2.4e-08 24_[+1]_55 chrXIV:102572-102964 2.4e-08 4_[-1]_75 chrXV:228173-228499 2.4e-08 51_[-1]_28 chrV:492256-492577 3.3e-08 30_[+1]_49 chrX:233764-233864 3.3e-08 60_[-1]_19 chrXIV:726059-726368 4.5e-08 26_[+1]_53 chrIV:519644-519875 4.5e-08 40_[-1]_39 chrII:9458-9758 4.5e-08 31_[-1]_48 chrVI:226582-226925 6.1e-08 29_[+1]_50 chrIV:1352371-1352645 6.1e-08 52_[+1]_27 chrXVI:581934-582246 6.1e-08 28_[-1]_51 chrVII:185570-185925 6.1e-08 61_[+1]_18 chrVII:876217-876608 6.1e-08 38_[-1]_41 chrV:135297-135626 6.1e-08 58_[+1]_21 chrX:390925-391025 1.4e-07 22_[+1]_57 chrXV:976248-976596 1.4e-07 55_[-1]_24 chrX:422791-422891 1.4e-07 53_[-1]_26 chrIV:1175657-1176062 1.4e-07 26_[-1]_53 chrXII:92379-92769 5.2e-07 30_[-1]_49 chrXIII:195952-196288 5.2e-07 72_[+1]_7 chrXIV:568012-568302 5.2e-07 14_[-1]_65 chrXV:300935-301314 5.2e-07 29_[-1]_50 chrXV:980554-980904 5.2e-07 10_[-1]_69 chrXI:84057-84360 5.8e-07 56_[-1]_23 chrIV:1256904-1257258 6.4e-07 20_[+1]_59 chrXIII:183846-183989 8.7e-07 73_[+1]_6 chrXV:281990-282338 8.7e-07 56_[-1]_23 chrXVI:860218-860592 8.7e-07 30_[-1]_49 chrIII:142607-142935 8.7e-07 22_[+1]_57 chrVII:845461-845881 8.7e-07 34_[-1]_45 chrXV:594246-594566 8.7e-07 41_[+1]_38 chrVII:845461-845889 8.7e-07 30_[-1]_49 chrV:469301-469595 9.6e-07 65_[-1]_14 chrX:378201-378301 9.6e-07 56_[-1]_23 chrXIII:420463-420813 9.6e-07 45_[+1]_34 chrVII:823338-823692 9.6e-07 23_[-1]_56 chrXIII:372372-372614 9.6e-07 47_[+1]_32 chrXV:663699-664020 9.6e-07 48_[+1]_31 chrVII:422914-423349 1.1e-06 17_[-1]_62 chrI:181007-181382 1.1e-06 3_[-1]_76 chrX:354093-354193 1.2e-06 34_[-1]_45 chrXV:288020-288377 1.2e-06 50_[-1]_29 chrVI:210525-210857 1.2e-06 38_[+1]_41 chrIV:946115-946570 1.2e-06 26_[-1]_53 chrVI:167302-167641 1.2e-06 22_[-1]_57 chrXI:46655-46970 1.8e-06 16_[+1]_63 chrX:538447-538547 2e-06 26_[-1]_53 chrVII:1004102-1004396 2.6e-06 23_[-1]_56 chrVII:779479-779798 2.6e-06 34_[-1]_45 chrVIII:466820-467131 2.6e-06 71_[-1]_8 chrVII:661580-661913 2.6e-06 59_[-1]_20 chrXIV:96078-96512 2.6e-06 39_[+1]_40 chrIV:768360-768816 2.8e-06 61_[+1]_18 chrXII:818473-818793 3.3e-06 32_[-1]_47 chrVIII:134185-134501 3.8e-06 34_[-1]_45 chrXIII:379251-379561 3.8e-06 24_[+1]_55 chrVII:878550-878981 3.8e-06 72_[+1]_7 chrV:131018-131317 3.8e-06 8_[+1]_71 chrXI:302773-303093 3.8e-06 41_[-1]_38 chrX:415859-415959 3.8e-06 28_[+1]_51 chrIV:802619-802969 3.8e-06 30_[+1]_49 chrIII:168214-168558 3.8e-06 8_[+1]_71 chrII:350655-350984 3.8e-06 64_[-1]_15 chrXVI:435769-436120 3.8e-06 42_[+1]_37 chrIV:520821-521145 3.8e-06 45_[-1]_34 chrII:642926-643221 3.8e-06 27_[+1]_52 chrXVI:56069-56427 3.8e-06 48_[+1]_31 chrXI:163740-164016 4.2e-06 26_[+1]_53 chrII:326694-327024 4.8e-06 28_[+1]_51 chrV:78429-78965 5.6e-06 73_[-1]_6 chrXII:283083-283842 6.9e-06 25_[+1]_54 chrX:374264-374364 8.4e-06 24_[+1]_55 chrXV:571800-572124 8.4e-06 52_[-1]_27 chrVII:544467-544830 8.4e-06 22_[+1]_57 chrX:204568-204668 8.4e-06 55_[-1]_24 chrX:355221-355321 8.4e-06 59_[-1]_20 chrXII:426976-427294 8.4e-06 53_[-1]_26 chrIV:568733-569117 9e-06 13_[-1]_66 chrVII:736158-736530 9e-06 52_[-1]_27 chrXIII:747795-748119 9e-06 28_[+1]_51 chrXI:162360-162719 9e-06 41_[+1]_38 chrX:517718-517818 9e-06 41_[+1]_38 chrXVI:338766-339077 9e-06 20_[+1]_59 chrXIV:631701-632055 1.1e-05 61_[+1]_18 chrIII:138077-138303 1.2e-05 6_[-1]_73 chrXI:618788-619244 1.4e-05 15_[+1]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DDSSCYYWWMCMACTRVGCCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DDSSCYYWWMCMACTRVGCCA width=21 seqs=126 chrX:59003-59103 ( 30) GGCGCCTTACCAACTTGGCCA 1 chrIV:434153-434443 ( 61) GGCGCCTTACCAACTTGGCCA 1 chrXII:214785-215096 ( 38) AGCGCGCTACCAACTGCGCCA 1 chrIX:174924-175174 ( 39) GGCGCCTTACCAACTTGGCCA 1 chrXV:113665-113986 ( 34) GGCGCCTTACCAACTTGGCCA 1 chrVIII:115987-116346 ( 36) GGCGCCTTACCAACTTGGCCA 1 chrIX:248680-249053 ( 41) GTCGCCTTAACCACTCGGCCA 1 chrXVI:880130-880524 ( 65) GTGCCTTAACCAACTGGGCCA 1 chrXIV:569787-570094 ( 23) GTGCCTTAACCAACTGGGCCA 1 chrV:443116-443425 ( 28) GTGCCTTAACCAACTGGGCCA 1 chrII:197341-197636 ( 63) GTGCCTTAACCAACTGGGCCA 1 chrXVI:819331-819755 ( 43) GTGCCTTAACCAACTGGGCCA 1 chrVII:738972-739309 ( 39) GTGCCTTAACCAACTGGGCCA 1 chrXV:274499-274861 ( 50) ATCGCCTTAACCACTCGGCCA 1 chrXII:784189-784580 ( 27) ATCGCCTTAACCACTCGGCCA 1 chrVIII:146082-146463 ( 65) AGCGCGCTACCGACTACGCCA 1 chrIV:410237-410564 ( 36) AGCGCGCTACCGACTACGCCA 1 chrX:197218-197318 ( 67) AGCGCGCTACCGACTACGCCA 1 chrXI:517807-518151 ( 66) AGCGCGCTACCGACTACGCCA 1 chrXII:167866-168171 ( 30) TTCGCCTTAACCACTCGGCCA 1 chrII:226930-227297 ( 19) TTCGCCTTAACCACTCGGCCA 1 chrIV:980861-981170 ( 63) TTCGCCTTAACCACTCGGCCA 1 chrXIII:259049-259387 ( 44) TTCGCCTTAACCACTCGGCCA 1 chrIV:437606-437957 ( 48) TTCGCCTTAACCACTCGGCCA 1 chrXV:438457-438873 ( 35) AACGCTCTACCAACTGAGCTA 1 chrIV:359433-359822 ( 7) AACGCTCTACCAACTGAGCTA 1 chrVII:115350-115694 ( 23) AACGCTCTACCAACTGAGCTA 1 chrXI:578809-579192 ( 22) AACGCTCTACCAACTGAGCTA 1 chrXII:875211-875594 ( 31) AACGCTCTACCAACTGAGCTA 1 chrIV:1095260-1095614 ( 47) GGCGCTCTCCCAACTGAGCTA 1 chrVIII:358370-358745 ( 35) GGCGCTCTCCCAACTGAGCTA 1 chrVIII:237765-238086 ( 37) GGCGCTCTCCCAACTGAGCTA 1 chrVII:440588-440983 ( 45) GGCGCTCTCCCAACTGAGCTA 1 chrII:36255-36587 ( 34) GGCGCTCTCCCAACTGAGCTA 1 chrVI:157825-158170 ( 33) GGCGCTCTCCCAACTGAGCTA 1 chrXVI:622450-622818 ( 20) GGCGCTCTCCCAACTGAGCTA 1 chrXI:74446-74810 ( 53) ACGCCTTAACCAACTTGGCCA 1 chrIII:127570-127890 ( 43) ACGCCTTAACCAACTTGGCCA 1 chrXVI:810568-810806 ( 46) ACGCCTTAACCAACTTGGCCA 1 chrVI:137322-137686 ( 78) ACGCCTTAACCAACTTGGCCA 1 chrXII:975910-976199 ( 25) ACGCCTTAACCAACTTGGCCA 1 chrXIV:102572-102964 ( 5) ACGCCTTAACCAACTTGGCCA 1 chrXV:228173-228499 ( 52) ACGCCTTAACCAACTTGGCCA 1 chrV:492256-492577 ( 31) GACGCCGTGACCATTGGGCCA 1 chrX:233764-233864 ( 61) GACGCCGTGACCATTGGGCCA 1 chrXIV:726059-726368 ( 27) CCGCCTTAGACCACTCGGCCA 1 chrIV:519644-519875 ( 41) CCGCCTTAGACCACTCGGCCA 1 chrII:9458-9758 ( 32) CCGCCTTAGACCACTCGGCCA 1 chrVI:226582-226925 ( 30) TACGCGCTACCGATTGCGCCA 1 chrIV:1352371-1352645 ( 53) TACGCGCTACCGATTGCGCCA 1 chrXVI:581934-582246 ( 29) TACGCGCTACCGATTGCGCCA 1 chrVII:185570-185925 ( 62) TACGCGCTACCGATTGCGCCA 1 chrVII:876217-876608 ( 39) TACGCGCTACCGATTGCGCCA 1 chrV:135297-135626 ( 59) TACGCGCTACCGATTGCGCCA 1 chrX:390925-391025 ( 23) GACGCTCTTCCTACTGAGCTA 1 chrXV:976248-976596 ( 56) GACGCTCTTCCTACTGAGCTA 1 chrX:422791-422891 ( 54) GACGCTCTTCCTACTGAGCTA 1 chrIV:1175657-1176062 ( 27) GACGCTCTTCCTACTGAGCTA 1 chrXII:92379-92769 ( 31) GAGAATCATACCACTAGACCA 1 chrXIII:195952-196288 ( 73) GAGAATCATACCACTAGACCA 1 chrXIV:568012-568302 ( 15) GAGAATCATACCACTAGACCA 1 chrXV:300935-301314 ( 30) GAGAATCATACCACTAGACCA 1 chrXV:980554-980904 ( 11) GAGAATCATACCACTAGACCA 1 chrXI:84057-84360 ( 57) CCGCATTAGACCACTCGGCCA 1 chrIV:1256904-1257258 ( 21) TGAATTCTAACCACTGAACCA 1 chrXIII:183846-183989 ( 74) TTGGATTTTACCACTAAACCA 1 chrXV:281990-282338 ( 57) TTGGATTTTACCACTAAACCA 1 chrXVI:860218-860592 ( 31) TTGGATTTTACCACTAAACCA 1 chrIII:142607-142935 ( 23) TTGGATTTTACCACTAAACCA 1 chrVII:845461-845881 ( 35) TTGGATTTTACCACTAAACCA 1 chrXV:594246-594566 ( 42) TAAATTCTAACCACTGAACCA 1 chrVII:845461-845889 ( 31) TTGGATTTTACCACTAAACCA 1 chrV:469301-469595 ( 66) ATGCCATAACCGACTAGACCA 1 chrX:378201-378301 ( 57) ATGCCATAACCGACTAGACCA 1 chrXIII:420463-420813 ( 46) ATGCCATAACCGACTAGACCA 1 chrVII:823338-823692 ( 24) ATGCCATAACCGACTAGACCA 1 chrXIII:372372-372614 ( 48) ATGCCATAACCGACTAGACCA 1 chrXV:663699-664020 ( 49) ATGCCATAACCGACTAGACCA 1 chrVII:422914-423349 ( 18) GCGCCTTAGACCGCTCGGCCA 1 chrI:181007-181382 ( 4) GCGCCTTAGACCGCTCGGCCA 1 chrX:354093-354193 ( 35) CGCCTTAAACCAACTTGGCTA 1 chrXV:288020-288377 ( 51) CGCCTTAAACCAACTTGGCTA 1 chrVI:210525-210857 ( 39) CGCCTTAAACCAACTTGGCTA 1 chrIV:946115-946570 ( 27) CGCCTTAAACCAACTTGGCTA 1 chrVI:167302-167641 ( 23) CGCCTTAAACCAACTTGGCTA 1 chrXI:46655-46970 ( 17) CGATGCCTTACCACTTGGCCA 1 chrX:538447-538547 ( 27) AGACGCGTTACCATTACGCCA 1 chrVII:1004102-1004396 ( 24) CAACGCTCTACCACTAAGCTA 1 chrVII:779479-779798 ( 35) GGGATGATAACCACTACACTA 1 chrVIII:466820-467131 ( 72) CAACGCTCTACCACTAAGCTA 1 chrVII:661580-661913 ( 60) CAACGCTCTACCACTAAGCTA 1 chrXIV:96078-96512 ( 40) GGGATGATAACCACTACACTA 1 chrIV:768360-768816 ( 62) TAACCGTCAACAACTTCACCA 1 chrXII:818473-818793 ( 33) TGCATGCTAACCATTGCACTA 1 chrVIII:134185-134501 ( 35) AAAGTGATAACCACTACACTA 1 chrXIII:379251-379561 ( 25) GAAAGCTCTACCATTGAGCCA 1 chrVII:878550-878981 ( 73) GAAAGCTCTACCATTGAGCCA 1 chrV:131018-131317 ( 9) AAAGTGATAACCACTACACTA 1 chrXI:302773-303093 ( 42) GAAAGCTCTACCATTGAGCCA 1 chrX:415859-415959 ( 29) GAAAGCTCTACCATTGAGCCA 1 chrIV:802619-802969 ( 31) AAAGTGATAACCACTACACTA 1 chrIII:168214-168558 ( 9) AAAGTGATAACCACTACACTA 1 chrII:350655-350984 ( 65) AAAGTGATAACCACTACACTA 1 chrXVI:435769-436120 ( 43) TGCTGCGCTACCACTGCGCCA 1 chrIV:520821-521145 ( 46) AAAGTGATAACCACTACACTA 1 chrII:642926-643221 ( 28) TGCTGCGCTACCACTGCGCCA 1 chrXVI:56069-56427 ( 49) GAAAGCTCTACCATTGAGCCA 1 chrXI:163740-164016 ( 27) GACGGTCTTACCACTCAACAA 1 chrII:326694-327024 ( 29) ACGTCTTGAACCACTGGACCA 1 chrV:78429-78965 ( 74) AAGGTTCTACCGACGACACCA 1 chrXII:283083-283842 ( 26) GGGGTTTCACCAACTTGGACA 1 chrX:374264-374364 ( 25) CCCATTCTGACCATTAAACTA 1 chrXV:571800-572124 ( 53) CCCATTCTGACCATTAAACTA 1 chrVII:544467-544830 ( 23) CCCATTCTGACCATTAAACTA 1 chrX:204568-204668 ( 56) CCCATTCTGACCATTAAACTA 1 chrX:355221-355321 ( 60) CCCATTCTGACCATTAAACTA 1 chrXII:426976-427294 ( 54) CCCATTCTGACCATTAAACTA 1 chrIV:568733-569117 ( 14) AGACGCGTTGCCATTACGCCA 1 chrVII:736158-736530 ( 53) AGACGCGTTGCCATTACGCCA 1 chrXIII:747795-748119 ( 29) AGACGCGTTGCCATTACGCCA 1 chrXI:162360-162719 ( 42) AGACGCGTTGCCATTACGCCA 1 chrX:517718-517818 ( 42) CTGCGCGCTTCCACTGCGCCA 1 chrXVI:338766-339077 ( 21) CTGCGCGCTTCCACTGCGCCA 1 chrXIV:631701-632055 ( 62) GAGAATCATACCTCTAGACCA 1 chrIII:138077-138303 ( 7) GAAGCCTTGACCTTTTGACCA 1 chrXI:618788-619244 ( 16) TGCACCCAGACAACTACACAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DDSSCYYWWMCMACTRVGCCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 45840 bayes= 8.48481 E= 8.1e-243 -3 -20 83 -69 11 -27 57 -47 -69 126 86 -1362 -75 76 126 -328 -158 153 -35 -69 -269 53 -20 72 -158 93 -114 53 -7 -79 -459 93 81 -179 -60 -15 68 126 -260 -428 -1362 238 -1362 -1362 1 145 -51 -328 165 -1362 -360 -428 -1362 205 -1362 -58 -1362 -1362 -459 169 25 -69 86 -89 1 40 118 -1362 8 -1362 181 -1362 -527 237 -1362 -1362 -428 181 -1362 1 170 -1362 -1362 -1362 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DDSSCYYWWMCMACTRVGCCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 126 E= 8.1e-243 0.301587 0.166667 0.341270 0.190476 0.333333 0.158730 0.285714 0.222222 0.190476 0.460317 0.349206 0.000000 0.182540 0.325397 0.460317 0.031746 0.103175 0.555556 0.150794 0.190476 0.047619 0.277778 0.166667 0.507937 0.103175 0.365079 0.087302 0.444444 0.293651 0.111111 0.007937 0.587302 0.539683 0.055556 0.126984 0.277778 0.492063 0.460317 0.031746 0.015873 0.000000 1.000000 0.000000 0.000000 0.309524 0.523810 0.134921 0.031746 0.968254 0.000000 0.015873 0.015873 0.000000 0.793651 0.000000 0.206349 0.000000 0.000000 0.007937 0.992063 0.365079 0.119048 0.349206 0.166667 0.309524 0.253968 0.436508 0.000000 0.325397 0.000000 0.674603 0.000000 0.007937 0.992063 0.000000 0.000000 0.015873 0.674603 0.000000 0.309524 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DDSSCYYWWMCMACTRVGCCA MEME-1 regular expression -------------------------------------------------------------------------------- [GA][AGT][CG][GC]C[TC][TC][TA][AT][AC]C[CA]A[CT]T[AG][GAC][GA]C[CT]A -------------------------------------------------------------------------------- Time 321.31 secs. ******************************************************************************** ******************************************************************************** MOTIF SGGRRTCGAACCSVKGAYCTY MEME-2 width = 21 sites = 65 llr = 1174 E-value = 4.0e-224 ******************************************************************************** -------------------------------------------------------------------------------- Motif SGGRRTCGAACCSVKGAYCTY MEME-2 Description -------------------------------------------------------------------------------- Simplified A :2:64:::aa::13126:1:2 pos.-specific C 4:::2:8:::a8631::6735 probability G 67a43::a::::44482:1:: matrix T ::::1a2::::2::4:24174 bits 2.4 * * * 2.1 * * * 1.9 * * * 1.7 * * **** Relative 1.4 * ******* * Entropy 1.2 *** ******** * * (26.1 bits) 1.0 **** ******** * *** 0.7 **** ******** * *** 0.5 **** ********* ****** 0.2 ********************* 0.0 --------------------- Multilevel GGGAATCGAACCCGGGACCTC consensus CA GG T GATATT CT sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRRTCGAACCSVKGAYCTY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIV:631701-632055 + 28 9.58e-13 GGGGCGAGCC GGGACTCGAACCCGGGACCTC CCGCACCCTA chrXII:214785-215096 + 3 1.19e-11 AC CGGAATCGAACCGATGACCTC TTCCTTGCAA chrXVI:880130-880524 + 29 6.08e-11 TGGTCTCTAG CGGGATCGAACCGCTGATCCC CGCGTTATTA chrXVI:819331-819755 - 79 6.08e-11 G CGGGATCGAACCGCTGATCCC CGCGTTATTA chrVII:738972-739309 - 75 6.08e-11 TCTAG CGGGATCGAACCGCTGATCCC CGCGTTATTA chrVII:774180-774656 - 23 7.15e-11 TGGACGAGTC CGGAATCGAACCGGAGACCTC TCCCATGCTA chrXIII:768261-768442 + 78 7.15e-11 TGGACGAGTC CGGAATCGAACCGGAGACCTC TC chrVIII:146082-146463 + 30 7.15e-11 TGGACGAGTC CGGAATCGAACCGGAGACCTC TCCCATGCTA chrIV:410237-410564 - 71 7.15e-11 GGACGAGTC CGGAATCGAACCGGAGACCTC TCCCATGCTA chrX:197218-197318 + 32 7.15e-11 TGGACGAGTC CGGAATCGAACCGGAGACCTC TCCCATGCTA chrXIII:195952-196288 + 8 1.76e-10 GCGAGCT GGGAATTGAACCCAGGGCCTC TCGCATGCTT chrXIII:183846-183989 + 41 1.76e-10 TGCGCAAGCC CGGAATCGAACCGGGGGCCCA ACGATGGCAA chrXIV:568012-568302 - 80 1.76e-10 . GGGAATTGAACCCAGGGCCTC TCGCATGCTT chrXVI:860218-860592 - 64 1.76e-10 TGCGCAAGCC CGGAATCGAACCGGGGGCCCA ACGATGGCAA chrVII:845461-845881 - 68 1.76e-10 TGCGCAAGCC CGGAATCGAACCGGGGGCCCA ACGATGGCAA chrVIII:388812-389005 + 45 1.76e-10 GGGGCGAGCT GGGAATTGAACCCAGGGCCTC TCGCATGCTT chrVII:845461-845889 - 64 1.76e-10 TGCGCAAGCC CGGAATCGAACCGGGGGCCCA ACGATGGCAA chrX:531671-531771 - 14 1.76e-10 TGCGCAAGCC CGGAATCGAACCGGGGGCCCA ACGATGGCAA chrXV:980554-980904 - 78 1.76e-10 CT GGGAATTGAACCCAGGGCCTC TCGCATGCTT chrV:354768-355161 - 61 3.07e-10 CTCCGATACG GGGAGTCGAACCCCGGTCTCC ACGGTGAAAG chrVII:779479-779798 - 69 3.07e-10 TGAGCGGTAC GAGAATCGAACCCGTGTCCCC ACCTTGGAAG chrVII:401456-401591 + 64 3.07e-10 CTCCGATACG GGGAGTCGAACCCCGGTCTCC ACGGTGAAAG chrVII:541683-542055 - 72 3.07e-10 CCGATACG GGGAGTCGAACCCCGGTCTCC ACGGTGAAAG chrII:645014-645342 - 80 3.07e-10 . GGGAGTCGAACCCCGGTCTCC ACGGTGAAAG chrXI:140874-141208 + 37 3.07e-10 CTCCGATACG GGGAGTCGAACCCCGGTCTCC ACGGTGAAAG chrV:176948-177286 - 73 3.07e-10 CGATACG GGGAGTCGAACCCCGGTCTCC ACGGTGAAAG chrXIV:96078-96512 + 6 3.07e-10 GGTAC GAGAATCGAACCCGTGTCCCC ACCTTGGAAG chrIV:1352371-1352645 + 18 4.00e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrXVI:581934-582246 - 64 4.00e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrVII:185570-185925 + 27 4.00e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrVII:876217-876608 - 74 4.00e-10 CTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrV:135297-135626 + 24 4.00e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrX:374264-374364 + 73 9.50e-10 CACTCACGAT GGGGGTCGAACCCATAATCTT CTGATTA chrIV:568733-569117 - 48 9.50e-10 CACTCACGAT GGGGGTCGAACCCATAATCTT CTGATTAGAA chrVII:405423-405688 - 6 9.50e-10 CACTCACGAT GGGGGTCGAACCCATAATCTT CTGAT chrV:138507-138994 - 7 9.50e-10 CACTCACGAT GGGGGTCGAACCCATAATCTT CTGATT chrXI:162360-162719 + 8 9.50e-10 TCACGAT GGGGGTCGAACCCATAATCTT CTGATTAGAA chrX:355221-355321 - 12 9.50e-10 CACTCACGAT GGGGGTCGAACCCATAATCTT CTGATTAGAA chrIV:359433-359822 - 65 1.34e-09 CTCCTCATAG GGGGCTCGAACCCCTGACATT TCGGTATCCT chrXI:578809-579192 - 80 1.34e-09 . GGGGCTCGAACCCCTGACATT TCGGTATCCT chrIV:434153-434443 + 26 3.48e-09 TGCTTCCAAT CGGATTTGAACCGATGATCTC CACATTACTA chrIX:174924-175174 - 74 3.48e-09 TCCAAT CGGATTTGAACCGATGATCTC CACATTACTA chrXV:113665-113986 - 69 3.48e-09 TGCTTCCAAT CGGATTTGAACCGATGATCTC CACATTACTA chrVIII:115987-116346 + 1 3.48e-09 . CGGATTTGAACCGATGATCTC CACATTACTA chrVIII:134185-134501 - 69 4.24e-09 AGGTCCTACC CGGATTCGAACCGGGGTTGTC CGGATCAAAA chrIV:520821-521145 - 80 4.24e-09 . CGGATTCGAACCGGGGTTGTC CGGATCAAAA chrX:538447-538547 - 61 5.13e-09 CGTTCCGTAC GGGACTCGAACCCGCAGTCTT CTCCTTAGGA chrXIII:420463-420813 + 10 8.87e-09 GATTTCGCC CAGGATCGAACTGGGGACGTT CTGCGTGTTA chrVII:823338-823692 - 60 8.87e-09 TGATTTCGCC CAGGATCGAACTGGGGACGTT CTGCGTGTTA chrXIII:372372-372614 + 12 8.87e-09 TGATTTCGCC CAGGATCGAACTGGGGACGTT CTGCGTGTTA chrXV:663699-664020 + 13 8.87e-09 TGATTTCGCC CAGGATCGAACTGGGGACGTT CTGCGTGTTA chrXV:594246-594566 + 8 1.06e-08 GCAAGCC GGGAATCGAACCCGGGCCTCA TGCTTGGGAA chrXII:818473-818793 - 67 2.75e-08 AGCTCCTCCC GGGACTCGAACCCGGATCACA GCCACCGGAA chrIV:946115-946570 - 78 3.42e-08 GG GCGAGTCGAACGCCCGATCTC AAGATTTCGT chrVI:167302-167641 - 74 3.42e-08 CCGGGG GCGAGTCGAACGCCCGATCTC AAGATTTCGT chrIII:127570-127890 - 79 3.93e-08 T GAGGGTTGAACTCACGATCTT GCGATTAACA chrVI:137322-137686 + 42 3.93e-08 CGACCCCAGT GAGGGTTGAACTCACGATCTT GCGATTAACA chrXIV:102572-102964 - 41 3.93e-08 CGACCCCAGT GAGGGTTGAACTCACGATCTT GCGATTAACA chrXV:487419-487619 - 13 3.93e-08 CGACCCCAGT GAGGGTTGAACTCACGATCTT GCGATTAACA chrIV:1175657-1176062 - 62 1.03e-07 TGCTCCAGGG GAGGTTCGAACTCTCGACCTT CAGATTATGA chrVII:1004102-1004396 - 58 1.22e-07 TGCCACCTGT CAGAATTGAACTAACGACCTT TGCATTACAA chrXVI:435769-436120 + 9 2.68e-07 CTCGCACT CAGGATCGAACTAAGGACCAA CAGATTTGCA chrX:517718-517818 + 8 3.71e-07 CGCCGCT CGGTTTCGATCCGAGGACATC AGGGTTATGA chrVIII:62594-62939 - 80 4.82e-07 . TAGAATCGAACCAGGGTTTCA TCGGCCACAA chrXIII:362915-363235 - 80 4.82e-07 . TAGAATCGAACCAGGGTTTCA TCGGCCACAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRRTCGAACCSVKGAYCTY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:631701-632055 9.6e-13 27_[+2]_52 chrXII:214785-215096 1.2e-11 2_[+2]_77 chrXVI:880130-880524 6.1e-11 28_[+2]_51 chrXVI:819331-819755 6.1e-11 78_[-2]_1 chrVII:738972-739309 6.1e-11 74_[-2]_5 chrVII:774180-774656 7.2e-11 22_[-2]_57 chrXIII:768261-768442 7.2e-11 77_[+2]_2 chrVIII:146082-146463 7.2e-11 29_[+2]_50 chrIV:410237-410564 7.2e-11 70_[-2]_9 chrX:197218-197318 7.2e-11 31_[+2]_48 chrXIII:195952-196288 1.8e-10 7_[+2]_72 chrXIII:183846-183989 1.8e-10 40_[+2]_39 chrXIV:568012-568302 1.8e-10 79_[-2] chrXVI:860218-860592 1.8e-10 63_[-2]_16 chrVII:845461-845881 1.8e-10 67_[-2]_12 chrVIII:388812-389005 1.8e-10 44_[+2]_35 chrVII:845461-845889 1.8e-10 63_[-2]_16 chrX:531671-531771 1.8e-10 13_[-2]_66 chrXV:980554-980904 1.8e-10 77_[-2]_2 chrV:354768-355161 3.1e-10 60_[-2]_19 chrVII:779479-779798 3.1e-10 68_[-2]_11 chrVII:401456-401591 3.1e-10 63_[+2]_16 chrVII:541683-542055 3.1e-10 71_[-2]_8 chrII:645014-645342 3.1e-10 79_[-2] chrXI:140874-141208 3.1e-10 36_[+2]_43 chrV:176948-177286 3.1e-10 72_[-2]_7 chrXIV:96078-96512 3.1e-10 5_[+2]_74 chrIV:1352371-1352645 4e-10 17_[+2]_62 chrXVI:581934-582246 4e-10 63_[-2]_16 chrVII:185570-185925 4e-10 26_[+2]_53 chrVII:876217-876608 4e-10 73_[-2]_6 chrV:135297-135626 4e-10 23_[+2]_56 chrX:374264-374364 9.5e-10 72_[+2]_7 chrIV:568733-569117 9.5e-10 47_[-2]_32 chrVII:405423-405688 9.5e-10 5_[-2]_74 chrV:138507-138994 9.5e-10 6_[-2]_73 chrXI:162360-162719 9.5e-10 7_[+2]_72 chrX:355221-355321 9.5e-10 11_[-2]_68 chrIV:359433-359822 1.3e-09 64_[-2]_15 chrXI:578809-579192 1.3e-09 79_[-2] chrIV:434153-434443 3.5e-09 25_[+2]_54 chrIX:174924-175174 3.5e-09 73_[-2]_6 chrXV:113665-113986 3.5e-09 68_[-2]_11 chrVIII:115987-116346 3.5e-09 [+2]_79 chrVIII:134185-134501 4.2e-09 68_[-2]_11 chrIV:520821-521145 4.2e-09 79_[-2] chrX:538447-538547 5.1e-09 60_[-2]_19 chrXIII:420463-420813 8.9e-09 9_[+2]_70 chrVII:823338-823692 8.9e-09 59_[-2]_20 chrXIII:372372-372614 8.9e-09 11_[+2]_68 chrXV:663699-664020 8.9e-09 12_[+2]_67 chrXV:594246-594566 1.1e-08 7_[+2]_72 chrXII:818473-818793 2.7e-08 66_[-2]_13 chrIV:946115-946570 3.4e-08 77_[-2]_2 chrVI:167302-167641 3.4e-08 73_[-2]_6 chrIII:127570-127890 3.9e-08 78_[-2]_1 chrVI:137322-137686 3.9e-08 41_[+2]_38 chrXIV:102572-102964 3.9e-08 40_[-2]_39 chrXV:487419-487619 3.9e-08 12_[-2]_67 chrIV:1175657-1176062 1e-07 61_[-2]_18 chrVII:1004102-1004396 1.2e-07 57_[-2]_22 chrXVI:435769-436120 2.7e-07 8_[+2]_71 chrX:517718-517818 3.7e-07 7_[+2]_72 chrVIII:62594-62939 4.8e-07 79_[-2] chrXIII:362915-363235 4.8e-07 79_[-2] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRRTCGAACCSVKGAYCTY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SGGRRTCGAACCSVKGAYCTY width=21 seqs=65 chrXIV:631701-632055 ( 28) GGGACTCGAACCCGGGACCTC 1 chrXII:214785-215096 ( 3) CGGAATCGAACCGATGACCTC 1 chrXVI:880130-880524 ( 29) CGGGATCGAACCGCTGATCCC 1 chrXVI:819331-819755 ( 79) CGGGATCGAACCGCTGATCCC 1 chrVII:738972-739309 ( 75) CGGGATCGAACCGCTGATCCC 1 chrVII:774180-774656 ( 23) CGGAATCGAACCGGAGACCTC 1 chrXIII:768261-768442 ( 78) CGGAATCGAACCGGAGACCTC 1 chrVIII:146082-146463 ( 30) CGGAATCGAACCGGAGACCTC 1 chrIV:410237-410564 ( 71) CGGAATCGAACCGGAGACCTC 1 chrX:197218-197318 ( 32) CGGAATCGAACCGGAGACCTC 1 chrXIII:195952-196288 ( 8) GGGAATTGAACCCAGGGCCTC 1 chrXIII:183846-183989 ( 41) CGGAATCGAACCGGGGGCCCA 1 chrXIV:568012-568302 ( 80) GGGAATTGAACCCAGGGCCTC 1 chrXVI:860218-860592 ( 64) CGGAATCGAACCGGGGGCCCA 1 chrVII:845461-845881 ( 68) CGGAATCGAACCGGGGGCCCA 1 chrVIII:388812-389005 ( 45) GGGAATTGAACCCAGGGCCTC 1 chrVII:845461-845889 ( 64) CGGAATCGAACCGGGGGCCCA 1 chrX:531671-531771 ( 14) CGGAATCGAACCGGGGGCCCA 1 chrXV:980554-980904 ( 78) GGGAATTGAACCCAGGGCCTC 1 chrV:354768-355161 ( 61) GGGAGTCGAACCCCGGTCTCC 1 chrVII:779479-779798 ( 69) GAGAATCGAACCCGTGTCCCC 1 chrVII:401456-401591 ( 64) GGGAGTCGAACCCCGGTCTCC 1 chrVII:541683-542055 ( 72) GGGAGTCGAACCCCGGTCTCC 1 chrII:645014-645342 ( 80) GGGAGTCGAACCCCGGTCTCC 1 chrXI:140874-141208 ( 37) GGGAGTCGAACCCCGGTCTCC 1 chrV:176948-177286 ( 73) GGGAGTCGAACCCCGGTCTCC 1 chrXIV:96078-96512 ( 6) GAGAATCGAACCCGTGTCCCC 1 chrIV:1352371-1352645 ( 18) GGGGCTCGAACCCCTAACCTT 1 chrXVI:581934-582246 ( 64) GGGGCTCGAACCCCTAACCTT 1 chrVII:185570-185925 ( 27) GGGGCTCGAACCCCTAACCTT 1 chrVII:876217-876608 ( 74) GGGGCTCGAACCCCTAACCTT 1 chrV:135297-135626 ( 24) GGGGCTCGAACCCCTAACCTT 1 chrX:374264-374364 ( 73) GGGGGTCGAACCCATAATCTT 1 chrIV:568733-569117 ( 48) GGGGGTCGAACCCATAATCTT 1 chrVII:405423-405688 ( 6) GGGGGTCGAACCCATAATCTT 1 chrV:138507-138994 ( 7) GGGGGTCGAACCCATAATCTT 1 chrXI:162360-162719 ( 8) GGGGGTCGAACCCATAATCTT 1 chrX:355221-355321 ( 12) GGGGGTCGAACCCATAATCTT 1 chrIV:359433-359822 ( 65) GGGGCTCGAACCCCTGACATT 1 chrXI:578809-579192 ( 80) GGGGCTCGAACCCCTGACATT 1 chrIV:434153-434443 ( 26) CGGATTTGAACCGATGATCTC 1 chrIX:174924-175174 ( 74) CGGATTTGAACCGATGATCTC 1 chrXV:113665-113986 ( 69) CGGATTTGAACCGATGATCTC 1 chrVIII:115987-116346 ( 1) CGGATTTGAACCGATGATCTC 1 chrVIII:134185-134501 ( 69) CGGATTCGAACCGGGGTTGTC 1 chrIV:520821-521145 ( 80) CGGATTCGAACCGGGGTTGTC 1 chrX:538447-538547 ( 61) GGGACTCGAACCCGCAGTCTT 1 chrXIII:420463-420813 ( 10) CAGGATCGAACTGGGGACGTT 1 chrVII:823338-823692 ( 60) CAGGATCGAACTGGGGACGTT 1 chrXIII:372372-372614 ( 12) CAGGATCGAACTGGGGACGTT 1 chrXV:663699-664020 ( 13) CAGGATCGAACTGGGGACGTT 1 chrXV:594246-594566 ( 8) GGGAATCGAACCCGGGCCTCA 1 chrXII:818473-818793 ( 67) GGGACTCGAACCCGGATCACA 1 chrIV:946115-946570 ( 78) GCGAGTCGAACGCCCGATCTC 1 chrVI:167302-167641 ( 74) GCGAGTCGAACGCCCGATCTC 1 chrIII:127570-127890 ( 79) GAGGGTTGAACTCACGATCTT 1 chrVI:137322-137686 ( 42) GAGGGTTGAACTCACGATCTT 1 chrXIV:102572-102964 ( 41) GAGGGTTGAACTCACGATCTT 1 chrXV:487419-487619 ( 13) GAGGGTTGAACTCACGATCTT 1 chrIV:1175657-1176062 ( 62) GAGGTTCGAACTCTCGACCTT 1 chrVII:1004102-1004396 ( 58) CAGAATTGAACTAACGACCTT 1 chrXVI:435769-436120 ( 9) CAGGATCGAACTAAGGACCAA 1 chrX:517718-517818 ( 8) CGGTTTCGATCCGAGGACATC 1 chrVIII:62594-62939 ( 80) TAGAATCGAACCAGGGTTTCA 1 chrXIII:362915-363235 ( 80) TAGAATCGAACCAGGGTTTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRRTCGAACCSVKGAYCTY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 45840 bayes= 9.4778 E= 4.0e-224 -1267 111 153 -332 -42 -264 194 -1267 -1267 -1267 238 -1267 92 -1267 106 -432 53 -32 53 -132 -1267 -1267 -1267 170 -1267 206 -1267 -62 -1267 -1267 238 -1267 170 -1267 -1267 -1267 168 -1267 -1267 -432 -1267 238 -1267 -1267 -1267 206 -264 -86 -232 153 100 -1267 14 53 94 -432 -200 -47 117 20 -62 -1267 206 -1267 103 -364 -32 -62 -1267 172 -1267 26 -232 188 -106 -115 -432 68 -1267 114 -100 131 -1267 26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRRTCGAACCSVKGAYCTY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 65 E= 4.0e-224 0.000000 0.415385 0.553846 0.030769 0.230769 0.030769 0.738462 0.000000 0.000000 0.000000 1.000000 0.000000 0.584615 0.000000 0.400000 0.015385 0.446154 0.153846 0.276923 0.123077 0.000000 0.000000 0.000000 1.000000 0.000000 0.800000 0.000000 0.200000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.984615 0.000000 0.000000 0.015385 0.000000 1.000000 0.000000 0.000000 0.000000 0.800000 0.030769 0.169231 0.061538 0.553846 0.384615 0.000000 0.338462 0.276923 0.369231 0.015385 0.076923 0.138462 0.430769 0.353846 0.200000 0.000000 0.800000 0.000000 0.630769 0.015385 0.153846 0.200000 0.000000 0.630769 0.000000 0.369231 0.061538 0.707692 0.092308 0.138462 0.015385 0.307692 0.000000 0.676923 0.153846 0.476923 0.000000 0.369231 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRRTCGAACCSVKGAYCTY MEME-2 regular expression -------------------------------------------------------------------------------- [GC][GA]G[AG][AG]T[CT]GAACC[CG][GAC][GT][GA][AT][CT]C[TC][CT] -------------------------------------------------------------------------------- Time 605.20 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTAACGGCTATCACATCACGCTTTCACCG MEME-3 width = 30 sites = 12 llr = 420 E-value = 5.5e-076 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTAACGGCTATCACATCACGCTTTCACCG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :3:a8:::::a::a:a:38:::::::8::: pos.-specific C :::::8::8:::8:a:38:a:8:::8:aa: probability G :8::3:aa:::3::::::::a::3:33::a matrix T a:a::3::3a:83:::8:3::3a8a::::: bits 2.4 ** * ** *** 2.1 ** * ** *** 1.9 ** * ** *** 1.7 * ** ** ** *** ** * ** *** Relative 1.4 **** ****** **** * **** ** *** Entropy 1.2 **** ****** **** * **** ** *** (50.5 bits) 1.0 ****************************** 0.7 ****************************** 0.5 ****************************** 0.2 ****************************** 0.0 ------------------------------ Multilevel TGTAACGGCTATCACATCACGCTTTCACCG consensus A GT T GT CAT T G GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAACGGCTATCACATCACGCTTTCACCG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrV:354768-355161 + 30 3.78e-19 TCCGATATAG TGTAACGGCTATCACATCACGCTTTCACCG TGGAGACCGG chrXVI:210104-210423 - 11 3.78e-19 TCCGATATAG TGTAACGGCTATCACATCACGCTTTCACCG TGGAGACCGG chrVII:541683-542055 + 41 3.78e-19 TCCGATATAG TGTAACGGCTATCACATCACGCTTTCACCG TGGAGACCGG chrII:645014-645342 + 49 3.78e-19 TCCGATATAG TGTAACGGCTATCACATCACGCTTTCACCG TGGAGACCGG chrX:115827-115927 - 15 3.78e-19 TCCGATATAG TGTAACGGCTATCACATCACGCTTTCACCG TGGAGACCGG chrXI:140874-141208 - 59 3.78e-19 TCCGATATAG TGTAACGGCTATCACATCACGCTTTCACCG TGGAGACCGG chrXII:797002-797352 + 61 3.78e-19 TCCGATATAG TGTAACGGCTATCACATCACGCTTTCACCG TGGAGACCGG chrV:176948-177286 + 42 3.78e-19 TCCGATATAG TGTAACGGCTATCACATCACGCTTTCACCG TGGAGACCGG chrIX:370233-370580 + 71 3.78e-19 TCCGATATAG TGTAACGGCTATCACATCACGCTTTCACCG chrV:434456-434784 - 3 8.22e-14 GCCATCTTAG TATAGTGGTTAGTACACATCGTTGTGGCCG AT chrVIII:62594-62939 + 49 8.22e-14 GCCATCTTAG TATAGTGGTTAGTACACATCGTTGTGGCCG ATGAAACCCT chrXIII:362915-363235 + 49 8.22e-14 GCCATCTTAG TATAGTGGTTAGTACACATCGTTGTGGCCG ATGAAACCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAACGGCTATCACATCACGCTTTCACCG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:354768-355161 3.8e-19 29_[+3]_41 chrXVI:210104-210423 3.8e-19 10_[-3]_60 chrVII:541683-542055 3.8e-19 40_[+3]_30 chrII:645014-645342 3.8e-19 48_[+3]_22 chrX:115827-115927 3.8e-19 14_[-3]_56 chrXI:140874-141208 3.8e-19 58_[-3]_12 chrXII:797002-797352 3.8e-19 60_[+3]_10 chrV:176948-177286 3.8e-19 41_[+3]_29 chrIX:370233-370580 3.8e-19 70_[+3] chrV:434456-434784 8.2e-14 2_[-3]_68 chrVIII:62594-62939 8.2e-14 48_[+3]_22 chrXIII:362915-363235 8.2e-14 48_[+3]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAACGGCTATCACATCACGCTTTCACCG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTAACGGCTATCACATCACGCTTTCACCG width=30 seqs=12 chrV:354768-355161 ( 30) TGTAACGGCTATCACATCACGCTTTCACCG 1 chrXVI:210104-210423 ( 11) TGTAACGGCTATCACATCACGCTTTCACCG 1 chrVII:541683-542055 ( 41) TGTAACGGCTATCACATCACGCTTTCACCG 1 chrII:645014-645342 ( 49) TGTAACGGCTATCACATCACGCTTTCACCG 1 chrX:115827-115927 ( 15) TGTAACGGCTATCACATCACGCTTTCACCG 1 chrXI:140874-141208 ( 59) TGTAACGGCTATCACATCACGCTTTCACCG 1 chrXII:797002-797352 ( 61) TGTAACGGCTATCACATCACGCTTTCACCG 1 chrV:176948-177286 ( 42) TGTAACGGCTATCACATCACGCTTTCACCG 1 chrIX:370233-370580 ( 71) TGTAACGGCTATCACATCACGCTTTCACCG 1 chrV:434456-434784 ( 3) TATAGTGGTTAGTACACATCGTTGTGGCCG 1 chrVIII:62594-62939 ( 49) TATAGTGGTTAGTACACATCGTTGTGGCCG 1 chrXIII:362915-363235 ( 49) TATAGTGGTTAGTACACATCGTTGTGGCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAACGGCTATCACATCACGCTTTCACCG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 40683 bayes= 10.5038 E= 5.5e-076 -1023 -1023 -1023 170 -30 -1023 196 -1023 -1023 -1023 -1023 170 170 -1023 -1023 -1023 128 -1023 38 -1023 -1023 196 -1023 -30 -1023 -1023 238 -1023 -1023 -1023 238 -1023 -1023 196 -1023 -30 -1023 -1023 -1023 170 170 -1023 -1023 -1023 -1023 -1023 38 128 -1023 196 -1023 -30 170 -1023 -1023 -1023 -1023 238 -1023 -1023 170 -1023 -1023 -1023 -1023 38 -1023 128 -30 196 -1023 -1023 128 -1023 -1023 -30 -1023 238 -1023 -1023 -1023 -1023 238 -1023 -1023 196 -1023 -30 -1023 -1023 -1023 170 -1023 -1023 38 128 -1023 -1023 -1023 170 -1023 196 38 -1023 128 -1023 38 -1023 -1023 238 -1023 -1023 -1023 238 -1023 -1023 -1023 -1023 238 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAACGGCTATCACATCACGCTTTCACCG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 12 E= 5.5e-076 0.000000 0.000000 0.000000 1.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.750000 0.000000 0.250000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.250000 0.750000 0.000000 0.000000 0.750000 0.000000 0.000000 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 0.750000 0.250000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAACGGCTATCACATCACGCTTTCACCG MEME-3 regular expression -------------------------------------------------------------------------------- T[GA]TA[AG][CT]GG[CT]TA[TG][CT]ACA[TC][CA][AT]CG[CT]T[TG]T[CG][AG]CCG -------------------------------------------------------------------------------- Time 884.69 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:96078-96512 1.90e-13 5_[+2(3.07e-10)]_1_[-3(9.70e-08)]_\ 20_[-1(7.26e-05)]_2 chrV:424850-425067 4.64e-01 100 chrXII:638485-639067 5.82e-01 100 chrII:9458-9758 3.45e-06 31_[-1(4.52e-08)]_25_[-2(2.59e-05)]_\ 2 chrXII:837797-839087 6.82e-04 58_[+1(8.91e-05)]_21 chrXI:518827-519353 4.99e-01 100 chrVII:738972-739309 5.05e-13 38_[-1(1.36e-09)]_15_[-2(6.08e-11)]_\ 5 chrXV:1028352-1028808 5.52e-01 100 chrIV:428109-428565 2.29e-01 100 chrXI:46362-46653 8.18e-01 100 chrXIII:253357-253609 7.58e-01 100 chrXIV:442867-443370 2.65e-02 20_[-2(2.92e-05)]_59 chrXVI:819331-819755 5.05e-13 42_[-1(1.36e-09)]_15_[-2(6.08e-11)]_\ 1 chrIV:1175657-1176062 3.94e-08 26_[-1(1.40e-07)]_14_[-2(1.03e-07)]_\ 18 chrXVI:746003-746459 8.37e-01 100 chrXII:426976-427294 1.77e-02 53_[-1(8.41e-06)]_26 chrXI:567107-567563 2.41e-01 100 chrIX:370233-370580 5.32e-15 70_[+3(3.78e-19)] chrXV:900074-900530 8.41e-01 100 chrX:233764-233864 3.00e-04 60_[-1(3.32e-08)]_19 chrXIV:63656-63909 2.73e-01 100 chrXII:818473-818793 9.49e-09 32_[-1(3.30e-06)]_13_[-2(2.75e-08)]_\ 13 chrVII:454476-454904 9.10e-01 100 chrIII:137936-138114 5.34e-02 100 chrIV:1466978-1467434 2.79e-01 100 chrVII:702811-703251 5.24e-01 100 chrXVI:74254-74710 2.59e-01 100 chrXVI:377919-378375 9.68e-01 100 chrXVI:40323-40566 1.59e-02 100 chrII:413761-414217 3.50e-02 100 chrXI:612294-612750 9.93e-01 100 chrV:176948-177286 9.50e-22 41_[+3(3.78e-19)]_1_[-2(3.07e-10)]_\ 7 chrXVI:746220-746676 4.25e-01 100 chrV:77578-77972 5.91e-01 100 chrXVI:56069-56427 1.73e-03 48_[+1(3.85e-06)]_31 chrIV:1268976-1269432 4.39e-01 100 chrVII:700484-701222 9.50e-01 100 chrXII:819998-820454 7.30e-01 100 chrXI:84057-84360 2.02e-04 56_[-1(5.79e-07)]_23 chrVIII:114908-115364 4.32e-01 100 chrX:74059-74159 9.49e-01 100 chrXV:444845-445857 2.46e-01 100 chrXV:216343-216601 9.55e-01 100 chrXV:487419-487619 9.30e-05 12_[-2(3.93e-08)]_67 chrXIII:732824-733280 5.88e-01 100 chrXV:868561-869017 6.30e-01 100 chrVIII:555104-555560 2.68e-02 100 chrVII:481793-482619 3.72e-01 100 chrIV:1233754-1234028 9.39e-01 100 chrIV:1237241-1237399 6.12e-01 100 chrXVI:700292-700748 8.90e-01 100 chrXIII:267974-268266 7.09e-01 100 chrIV:927392-927848 5.63e-02 100 chrXIII:123251-123707 6.86e-01 100 chrV:117756-118246 3.30e-01 100 chrXIV:87319-87769 2.86e-01 100 chrXV:80929-81096 8.55e-01 100 chrXV:980554-980904 4.69e-10 10_[-1(5.20e-07)]_46_[-2(1.76e-10)]_\ 2 chrXIII:667883-668339 9.66e-01 100 chrVIII:382992-383264 8.89e-01 100 chrVII:148341-148549 1.51e-01 100 chrVII:311067-312119 4.41e-01 100 chrX:531671-531771 1.47e-06 13_[-2(1.76e-10)]_66 chrVIII:451400-452993 6.62e-01 100 chrXII:797002-797352 5.32e-15 60_[+3(3.78e-19)]_10 chrI:181007-181382 8.53e-05 3_[-1(1.06e-06)]_55_[-2(2.92e-05)] chrXI:140874-141208 9.50e-22 36_[+2(3.07e-10)]_1_[-3(3.78e-19)]_\ 12 chrII:168544-169000 2.86e-01 100 chrVII:426947-427403 9.23e-01 100 chrIII:138077-138303 9.34e-03 6_[-1(1.23e-05)]_73 chrX:703344-703444 7.82e-01 100 chrI:71953-72704 3.18e-01 100 chrXI:558757-559213 6.71e-01 100 chrXV:620516-620819 1.77e-01 100 chrXVI:622450-622818 2.79e-04 19_[+1(2.04e-08)]_60 chrXVI:338766-339077 6.57e-03 20_[+1(8.98e-06)]_59 chrXI:163831-164287 1.90e-01 100 chrXV:228173-228499 1.99e-04 51_[-1(2.41e-08)]_28 chrV:306466-306922 6.20e-01 100 chrXII:875211-875594 1.84e-05 30_[-1(4.79e-09)]_49 chrXI:430976-431432 8.01e-01 100 chrVII:667799-668079 4.85e-02 17_[+3(8.03e-05)]_53 chrIV:1492135-1492591 8.34e-01 100 chrX:355221-355321 2.33e-08 11_[-2(9.50e-10)]_27_[-1(8.41e-06)]_\ 20 chrIV:1251628-1252084 1.58e-01 100 chrII:228652-229108 9.98e-01 100 chrIV:916627-917083 4.88e-01 100 chrVII:57354-57810 9.98e-01 100 chrXV:779777-780937 7.54e-01 100 chrIX:248680-249053 9.48e-06 40_[-1(5.32e-10)]_39 chrVII:365555-365783 2.24e-01 100 chrII:301164-301428 9.34e-01 100 chrVII:437218-437674 6.08e-01 100 chrIV:519644-519875 2.19e-05 40_[-1(4.52e-08)]_39 chrIV:308249-308705 5.52e-01 100 chrVIII:115987-116346 6.40e-12 [+2(3.48e-09)]_14_[+1(4.15e-10)]_44 chrVII:422914-423349 5.53e-03 17_[-1(1.06e-06)]_62 chrVII:277956-278421 1.10e-01 37_[-1(9.65e-05)]_42 chrX:139225-139325 8.41e-01 100 chrXVI:406281-406435 4.78e-01 100 chrI:72602-72876 7.32e-01 100 chrXVI:869208-869664 6.71e-01 100 chrV:269138-269594 8.71e-01 100 chrIV:230418-230874 1.97e-01 100 chrVII:706960-707207 6.78e-01 100 chrVI:95656-96112 1.28e-01 100 chrXIV:577247-577373 1.02e-01 100 chrIV:1360538-1360994 5.23e-01 100 chrI:143268-143474 6.49e-01 100 chrXII:784189-784580 1.90e-07 26_[-1(1.70e-09)]_53 chrXV:663699-664020 1.70e-08 12_[+2(8.87e-09)]_15_[+1(9.64e-07)]_\ 31 chrII:642926-643221 1.22e-02 27_[+1(3.85e-06)]_52 chrX:115827-115927 5.32e-15 14_[-3(3.78e-19)]_56 chrIV:914519-914975 8.49e-01 100 chrXII:260107-260563 5.26e-01 100 chrV:511706-512162 6.58e-01 100 chrXI:517807-518151 4.69e-06 65_[-1(2.11e-09)]_14 chrV:51699-52155 9.78e-01 100 chrVII:120957-121209 8.27e-01 100 chrXII:65363-65819 3.65e-01 100 chrVI:95433-95889 2.09e-02 100 chrII:645014-645342 9.50e-22 48_[+3(3.78e-19)]_1_[-2(3.07e-10)] chrXV:159331-160175 3.33e-01 100 chrV:305878-306106 9.02e-01 100 chrII:604631-605087 3.05e-01 100 chrXIII:557542-557998 1.55e-01 16_[+1(8.91e-05)]_63 chrXI:589802-590258 9.93e-01 100 chrVI:83940-84250 8.69e-01 100 chrVII:534894-535138 8.58e-01 100 chrXV:1028275-1028479 1.94e-01 100 chrXV:254503-254959 5.30e-01 100 chrXIII:880534-880884 6.36e-01 100 chrXIII:162437-162627 5.80e-01 100 chrXIII:671527-671983 5.96e-02 100 chrII:197341-197636 2.14e-05 62_[-1(1.36e-09)]_17 chrII:332413-332660 9.19e-01 100 chrIV:1489122-1489716 8.29e-01 100 chrXVI:407077-407533 1.56e-01 100 chrXIV:102572-102964 7.24e-09 4_[-1(2.41e-08)]_15_[-2(3.93e-08)]_\ 39 chrI:142523-143140 7.95e-01 100 chrV:379925-380381 2.14e-01 100 chrIV:914162-914502 8.51e-01 100 chrXII:637136-637868 7.60e-02 77_[-1(3.34e-05)]_2 chrXIII:372372-372614 1.70e-08 11_[+2(8.87e-09)]_15_[+1(9.64e-07)]_\ 32 chrIV:437606-437957 3.81e-05 47_[-1(3.92e-09)]_32 chrXVI:75694-76150 1.61e-01 100 chrX:197218-197318 6.62e-13 31_[+2(7.15e-11)]_14_[+1(2.11e-09)]_\ 13 chrVII:398963-399193 7.79e-01 100 chrV:85158-85433 3.67e-01 100 chrIV:218292-218748 7.22e-01 100 chrII:235355-235811 9.16e-01 100 chrV:140559-140780 9.49e-01 100 chrV:135297-135626 1.90e-10 23_[+2(4.00e-10)]_14_[+1(6.09e-08)]_\ 21 chrII:165141-165423 7.39e-01 100 chrXII:781569-781767 8.89e-01 100 chrXIII:259049-259387 3.92e-05 43_[+1(3.92e-09)]_36 chrXIII:297005-298833 9.99e-01 100 chrV:322425-322715 9.90e-01 100 chrXV:925034-925490 2.59e-01 100 chrXIV:726059-726368 2.19e-05 26_[+1(4.52e-08)]_53 chrXV:113665-113986 1.04e-11 33_[-1(4.15e-10)]_14_[-2(3.48e-09)]_\ 11 chrVII:227630-227803 9.95e-01 100 chrXV:680504-680960 7.64e-02 100 chrV:85697-87003 9.76e-01 100 chrV:362794-363250 9.58e-01 100 chrXVI:823886-824342 7.15e-01 100 chrXII:499358-499641 9.55e-01 100 chrII:305239-305695 5.99e-01 100 chrII:477098-477394 8.19e-01 100 chrXV:624024-624480 7.60e-01 100 chrIX:174924-175174 1.04e-11 38_[-1(4.15e-10)]_14_[-2(3.48e-09)]_\ 6 chrXII:954185-954641 5.81e-01 100 chrIV:914936-915177 5.57e-01 100 chrXII:514037-514493 8.68e-01 100 chrXIV:516782-517002 8.05e-01 100 chrX:517718-517818 4.13e-06 7_[+2(3.71e-07)]_13_[+1(8.98e-06)]_\ 38 chrIV:768360-768816 4.64e-03 61_[+1(2.81e-06)]_18 chrVIII:96445-96901 3.74e-01 100 chrXI:162360-162719 1.43e-08 7_[+2(9.50e-10)]_13_[+1(8.98e-06)]_\ 38 chrX:349013-349113 9.93e-01 100 chrVII:845461-845889 4.13e-10 30_[-1(8.73e-07)]_12_[-2(1.76e-10)]_\ 16 chrXV:110553-110772 8.86e-01 100 chrIV:117292-117492 7.32e-01 100 chrII:159673-160129 2.08e-01 100 chrXII:922247-922444 8.09e-01 100 chrIV:356288-356480 8.61e-01 100 chrV:396339-396470 7.33e-01 100 chrX:126418-126518 2.44e-01 100 chrXII:793725-794236 5.76e-02 28_[-2(3.58e-05)]_51 chrXV:605417-605873 8.47e-01 100 chrXII:1012160-1012364 3.61e-01 100 chrVII:559347-559803 1.97e-01 100 chrIV:915890-916096 2.54e-01 100 chrXII:214785-215096 8.91e-15 2_[+2(1.19e-11)]_14_[+1(4.15e-10)]_\ 42 chrXIII:728853-729309 9.05e-01 100 chrXIV:529481-529879 2.62e-01 100 chrIV:520821-521145 5.47e-12 48_[+3(1.67e-07)]_1_[-2(4.24e-09)] chrV:396874-397330 6.80e-01 100 chrXV:832272-832687 2.87e-01 100 chrXII:198817-199701 7.21e-02 100 chrXII:499059-499358 5.43e-01 100 chrIV:434153-434443 1.04e-11 25_[+2(3.48e-09)]_14_[+1(4.15e-10)]_\ 19 chrIV:1236493-1236949 8.36e-01 100 chrX:122364-122464 3.62e-01 100 chrXII:721834-722290 7.07e-01 100 chrVI:167302-167641 1.68e-07 22_[-1(1.17e-06)]_30_[-2(3.42e-08)]_\ 6 chrX:123371-123471 7.92e-01 100 chrVII:641212-641668 9.46e-01 100 chrVIII:147771-148227 9.95e-02 100 chrVIII:132777-133233 9.96e-01 100 chrXIII:223400-223856 3.63e-01 100 chrXII:232048-234046 5.78e-02 100 chrXII:897923-898379 7.05e-01 100 chrXII:712324-712780 7.38e-02 45_[-2(9.17e-05)]_34 chrIV:1245592-1246048 7.40e-01 100 chrVII:541683-542055 9.50e-22 40_[+3(3.78e-19)]_1_[-2(3.07e-10)]_\ 8 chrXV:903820-904277 4.39e-01 100 chrXIV:495272-495459 8.96e-02 7_[-3(5.78e-05)]_63 chrV:443116-443425 7.14e-06 27_[+1(1.36e-09)]_52 chrXIV:253369-253825 6.98e-01 100 chrXIV:569787-570094 5.22e-06 22_[+1(1.36e-09)]_57 chrXI:431980-432436 1.00e-01 100 chrXV:978810-979088 7.64e-01 100 chrXIV:352614-353070 7.72e-03 100 chrXV:274499-274861 1.32e-05 49_[-1(1.70e-09)]_30 chrIX:255355-255705 8.87e-01 100 chrXV:93243-93433 9.99e-01 100 chrXII:283083-283842 1.68e-02 25_[+1(6.87e-06)]_54 chrIV:1489954-1490440 1.79e-01 100 chrIV:980861-981170 2.35e-05 62_[+1(3.92e-09)]_17 chrXIII:279864-280320 6.71e-01 100 chrXII:440670-441126 4.11e-01 100 chrIV:1493840-1494296 2.08e-01 100 chrX:422791-422891 5.29e-04 53_[-1(1.40e-07)]_26 chrXV:908524-908980 8.97e-01 100 chrX:204568-204668 1.82e-02 55_[-1(8.41e-06)]_24 chrIV:340556-341012 9.44e-01 100 chrVI:82215-82547 8.13e-01 100 chrXVI:67176-67632 2.99e-01 100 chrXIV:585703-586335 9.06e-01 100 chrXIII:754382-754838 4.44e-01 100 chrVIII:388812-389005 3.24e-06 44_[+2(1.76e-10)]_35 chrIII:138672-138971 6.51e-01 100 chrXVI:303496-303736 5.22e-01 100 chrIV:410237-410564 6.62e-13 35_[-1(2.11e-09)]_14_[-2(7.15e-11)]_\ 9 chrV:138507-138994 1.75e-05 6_[-2(9.50e-10)]_73 chrXII:720597-721053 1.22e-01 100 chrII:680407-680730 5.31e-01 100 chrXIII:760448-760904 7.48e-02 100 chrXII:263604-263745 5.43e-01 100 chrXIII:220122-220578 6.46e-01 100 chrIV:117730-118186 3.65e-01 100 chrII:326694-327024 1.38e-03 28_[+1(4.82e-06)]_51 chrIV:489845-490301 8.41e-01 100 chrII:373619-374075 7.48e-02 100 chrXIV:675749-676135 3.61e-01 100 chrXII:975910-976199 1.18e-04 24_[+1(2.41e-08)]_55 chrIV:946115-946570 2.00e-07 26_[-1(1.17e-06)]_30_[-2(3.42e-08)]_\ 2 chrXI:334503-334959 2.82e-01 100 chrV:236344-236800 3.08e-01 100 chrXIV:301200-301656 2.17e-01 100 chrIV:45494-45709 7.25e-01 100 chrVII:823338-823692 1.70e-08 23_[-1(9.64e-07)]_15_[-2(8.87e-09)]_\ 20 chrXIV:138926-139382 3.05e-01 100 chrV:386130-386509 6.89e-01 100 chrV:363004-363460 1.96e-01 100 chrXVI:821793-822019 9.89e-01 100 chrIII:30526-30796 5.79e-01 100 chrXIV:575329-575704 3.36e-01 100 chrVI:90587-91002 7.22e-01 100 chrV:423209-423403 3.54e-01 100 chrVII:557050-557506 1.59e-01 100 chrXII:243141-243597 8.09e-02 8_[-3(5.78e-05)]_62 chrVI:157825-158170 1.99e-04 32_[+1(2.04e-08)]_47 chrIII:228788-229021 5.12e-01 100 chrXV:594246-594566 3.21e-08 7_[+2(1.06e-08)]_13_[+1(8.73e-07)]_\ 38 chrX:227825-227925 9.80e-01 100 chrXIII:552965-553174 2.47e-02 19_[-1(8.22e-05)]_60 chrVII:883753-883867 6.31e-01 100 chrX:538447-538547 4.30e-08 26_[-1(2.01e-06)]_13_[-2(5.13e-09)]_\ 19 chrXIV:229956-230150 9.68e-01 100 chrVIII:411196-411667 6.68e-01 100 chrXIII:879174-879630 9.76e-01 100 chrXVI:435769-436120 3.26e-06 8_[+2(2.68e-07)]_13_[+1(3.85e-06)]_\ 37 chrXVI:280773-281446 8.29e-01 100 chrXVI:795192-795648 2.16e-01 100 chrX:156472-156572 7.55e-01 100 chrV:431050-431523 4.41e-02 100 chrXII:637826-638347 7.07e-01 100 chrIV:1236854-1237021 4.17e-01 100 chrXIV:335533-335989 2.69e-01 100 chrII:605827-606063 1.21e-01 19_[+1(8.91e-05)]_60 chrII:350655-350984 1.12e-06 67_[+3(1.67e-07)]_3 chrXV:300935-301314 5.61e-04 29_[-1(5.20e-07)]_50 chrXIV:68418-68745 8.15e-01 100 chrVII:661580-661913 3.81e-03 59_[-1(2.59e-06)]_20 chrXI:326169-327345 1.89e-02 100 chrXI:430759-431215 2.40e-01 100 chrXVI:700055-700288 8.10e-01 100 chrV:151965-152131 9.91e-01 100 chrII:625334-625752 9.60e-01 100 chrVIII:146082-146463 6.62e-13 29_[+2(7.15e-11)]_14_[+1(2.11e-09)]_\ 15 chrIII:168214-168558 5.07e-03 8_[+1(3.85e-06)]_71 chrVI:64621-65077 9.67e-01 100 chrXII:515369-515825 3.09e-01 100 chrXI:379663-380119 9.90e-01 100 chrXIII:420463-420813 1.70e-08 9_[+2(8.87e-09)]_15_[+1(9.64e-07)]_\ 34 chrIX:317636-318092 1.49e-02 100 chrVIII:127217-127673 4.54e-01 100 chrIX:69119-69575 6.36e-01 100 chrXIII:747795-748119 1.55e-02 28_[+1(8.98e-06)]_51 chrVII:544467-544830 1.82e-02 22_[+1(8.41e-06)]_57 chrV:465524-465980 5.66e-01 100 chrXIV:663733-664048 3.17e-01 100 chrX:74761-74861 1.06e-01 100 chrXIV:172599-173055 4.60e-01 100 chrXII:855903-856359 7.39e-01 100 chrI:66960-67416 4.23e-01 100 chrXIII:550622-551078 8.72e-01 100 chrXI:618788-619244 1.21e-02 15_[+1(1.39e-05)]_64 chrV:68925-69483 9.92e-02 100 chrVII:845461-845881 4.13e-10 34_[-1(8.73e-07)]_12_[-2(1.76e-10)]_\ 12 chrXII:780838-781063 5.25e-01 100 chrIX:231855-232311 6.81e-01 100 chrIX:232619-233028 9.85e-01 100 chrX:291066-291166 8.80e-01 100 chrXIII:510942-511262 5.67e-01 100 chrV:492256-492577 1.03e-04 30_[+1(3.32e-08)]_49 chrVI:137322-137686 7.24e-09 41_[+2(3.93e-08)]_15_[+1(2.41e-08)]_\ 2 chrVII:401456-401591 2.02e-06 63_[+2(3.07e-10)]_16 chrIV:802619-802969 1.54e-07 18_[-3(1.67e-07)]_52 chrXV:91980-92189 2.79e-01 100 chrXV:323315-323771 6.84e-01 100 chrX:212928-213028 6.52e-01 100 chrVII:1050275-1050466 7.27e-02 100 chrXI:163740-164016 4.99e-03 26_[+1(4.15e-06)]_53 chrII:45046-45355 9.99e-01 100 chrXII:796495-796775 9.20e-01 100 chrIII:142607-142935 1.42e-03 22_[+1(8.73e-07)]_57 chrIX:45817-46263 4.64e-01 100 chrX:415859-415959 1.73e-03 28_[+1(3.85e-06)]_51 chrX:140993-141093 2.04e-01 100 chrXIV:417767-418223 7.93e-01 100 chrVII:364803-365259 5.21e-01 100 chrX:119893-119993 8.48e-01 100 chrVIII:554360-554592 9.78e-01 100 chrXV:900290-900746 8.73e-01 100 chrXIV:745660-746248 8.00e-01 100 chrXV:571800-572124 6.30e-03 52_[-1(8.41e-06)]_27 chrII:226930-227297 2.35e-05 18_[-1(3.92e-09)]_61 chrXV:866673-866871 3.13e-01 100 chrIV:721876-722102 1.52e-01 100 chrVII:664781-665237 6.40e-01 100 chrIX:97227-97683 6.56e-01 100 chrXVI:860218-860592 4.13e-10 30_[-1(8.73e-07)]_12_[-2(1.76e-10)]_\ 16 chrVII:748927-749383 9.75e-02 75_[-1(8.56e-05)]_4 chrVIII:282307-282763 7.14e-01 100 chrII:36255-36587 1.59e-04 33_[-1(2.04e-08)]_46 chrXVI:880130-880524 5.05e-13 28_[+2(6.08e-11)]_15_[+1(1.36e-09)]_\ 15 chrXIV:628717-628951 1.00e+00 100 chrXII:722819-723275 3.91e-01 100 chrXVI:718567-719075 8.66e-01 100 chrXVI:67047-67366 3.93e-01 100 chrIV:491584-492040 9.39e-02 100 chrXI:93776-94033 9.44e-01 100 chrIV:599733-600094 8.75e-01 100 chrXV:988941-989397 4.99e-03 41_[-3(1.73e-05)]_29 chrXI:302773-303093 1.73e-03 41_[-1(3.85e-06)]_38 chrXVI:173061-173235 2.08e-01 100 chrXV:882248-882402 5.62e-01 100 chrII:311490-311894 1.06e-01 100 chrXI:109858-110314 8.41e-02 100 chrVII:916283-916739 7.80e-01 100 chrVII:876217-876608 1.90e-10 38_[-1(6.09e-08)]_14_[-2(4.00e-10)]_\ 6 chrX:73729-73829 5.91e-01 100 chrXIII:768261-768442 9.81e-07 77_[+2(7.15e-11)]_2 chrXV:448887-449240 6.77e-01 100 chrXI:578809-579192 6.71e-11 21_[-1(4.79e-09)]_37_[-2(1.34e-09)] chrXIV:568231-568382 9.74e-01 100 chrII:88947-89403 1.00e+00 100 chrIV:129998-130266 9.54e-01 100 chrV:131018-131317 3.99e-03 8_[+1(3.85e-06)]_71 chrI:141674-141874 8.72e-01 100 chrVII:405423-405688 8.28e-06 5_[-2(9.50e-10)]_74 chrXV:281990-282338 1.42e-03 56_[-1(8.73e-07)]_23 chrVII:365093-365549 4.76e-01 100 chrVII:599494-599950 7.63e-01 100 chrXIV:62099-62555 7.28e-01 100 chrXVI:718967-719194 9.49e-01 100 chrVII:289282-289706 1.61e-01 100 chrXIII:362915-363235 2.40e-13 48_[+3(8.22e-14)]_1_[-2(4.82e-07)] chrXV:976248-976596 4.45e-04 55_[-1(1.40e-07)]_24 chrV:425032-425207 5.30e-01 100 chrII:228414-228870 7.84e-01 100 chrVII:185570-185925 1.90e-10 26_[+2(4.00e-10)]_14_[+1(6.09e-08)]_\ 18 chrXVI:810568-810806 3.00e-05 45_[-1(2.41e-08)]_34 chrXIII:774283-774739 5.89e-01 100 chrXII:789804-790046 7.77e-01 100 chrXI:334385-334545 6.43e-01 100 chrVI:89782-90238 1.61e-01 100 chrV:424010-424187 1.67e-01 100 chrXV:759225-759681 8.02e-01 100 chrIV:1362338-1362624 4.94e-02 100 chrII:606351-606807 9.25e-01 100 chrVII:787120-787315 9.99e-01 100 chrX:121379-121479 6.02e-02 12_[-3(8.26e-05)]_58 chrV:424045-424501 7.45e-01 100 chrXII:1002357-1002813 1.24e-01 20_[-2(9.96e-05)]_59 chrXII:167866-168171 1.81e-05 29_[+1(3.92e-09)]_50 chrX:59003-59103 4.20e-06 29_[+1(4.15e-10)]_50 chrVII:878550-878981 1.62e-04 4_[+2(2.75e-05)]_47_[+1(3.85e-06)]_\ 7 chrXV:759122-759338 2.28e-01 100 chrIV:555667-556074 7.67e-01 100 chrXV:409291-409747 5.66e-01 100 chrVI:210525-210857 4.71e-03 38_[+1(1.17e-06)]_41 chrXV:493831-494287 1.40e-01 100 chrX:390925-391025 4.41e-04 22_[+1(1.40e-07)]_57 chrXV:160404-160584 6.90e-01 100 chrI:171614-172041 9.36e-01 100 chrII:299968-300424 9.01e-01 100 chrII:592191-592647 6.34e-01 100 chrXII:819593-820049 6.66e-01 100 chrXV:87406-87862 9.96e-01 100 chrVII:736158-736530 2.18e-02 52_[-1(8.98e-06)]_27 chrXII:348176-348632 3.42e-01 100 chrXIII:762487-762943 3.49e-01 100 chrXIII:163395-163851 5.50e-01 100 chrIV:308488-308944 1.76e-01 100 chrXII:1028998-1029454 8.44e-01 100 chrIII:78765-79094 8.05e-01 100 chrVII:611497-611888 9.28e-01 100 chrVIII:466820-467131 1.22e-02 71_[-1(2.59e-06)]_8 chrXI:336460-336916 3.77e-01 100 chrXVI:452175-452631 9.67e-01 100 chrIV:230393-230609 7.11e-01 100 chrX:378201-378301 4.81e-04 56_[-1(9.64e-07)]_23 chrVII:556215-556671 4.69e-01 100 chrXIV:568012-568302 5.15e-10 14_[-1(5.20e-07)]_44_[-2(1.76e-10)] chrXII:837797-839150 6.82e-04 27_[+1(8.91e-05)]_52 chrVIII:62594-62939 2.40e-13 48_[+3(8.22e-14)]_1_[-2(4.82e-07)] chrVII:1057349-1057805 9.97e-01 100 chrX:453727-453827 6.43e-01 100 chrXVI:210104-210423 5.32e-15 10_[-3(3.78e-19)]_60 chrVII:961247-961703 7.70e-01 100 chrXII:759132-759410 7.58e-01 100 chrXIV:174254-174393 8.13e-01 100 chrIII:127570-127890 7.42e-09 42_[-1(2.41e-08)]_15_[-2(3.93e-08)]_\ 1 chrXIV:331898-332354 6.88e-01 100 chrV:207377-207833 3.32e-01 100 chrXI:38919-39375 9.30e-01 100 chrXI:259502-259765 9.86e-01 100 chrXI:74446-74810 9.33e-05 52_[-1(2.41e-08)]_27 chrXIII:379251-379561 1.06e-03 24_[+1(3.85e-06)]_55 chrV:267718-268174 4.46e-01 100 chrXIII:183846-183989 4.13e-10 40_[+2(1.76e-10)]_12_[+1(8.73e-07)]_\ 6 chrXII:459489-460176 8.93e-01 100 chrII:301295-301751 4.22e-01 100 chrXVI:95113-95439 8.21e-01 100 chrII:88133-88592 6.38e-01 100 chrVII:774180-774656 1.91e-06 22_[-2(7.15e-11)]_57 chrVII:798668-799124 1.78e-01 100 chrXII:691192-691608 8.27e-01 100 chrXV:778379-778835 5.82e-01 100 chrVII:440588-440983 1.99e-04 44_[+1(2.04e-08)]_35 chrXIV:631701-632055 6.95e-11 27_[+2(9.58e-13)]_13_[+1(1.09e-05)]_\ 18 chrXII:673927-674133 1.04e-01 100 chrX:68963-69063 4.19e-01 100 chrXIV:415600-416056 2.91e-01 100 chrVIII:35440-35927 8.18e-01 100 chrII:478900-479219 8.82e-01 100 chrXV:288020-288377 3.62e-03 50_[-1(1.17e-06)]_29 chrXIV:493523-493979 8.97e-01 100 chrXII:369210-370084 9.25e-01 100 chrVII:648046-648502 7.30e-01 100 chrX:75452-75552 6.71e-01 100 chrXII:794149-795042 4.91e-01 100 chrX:354093-354193 2.87e-03 34_[-1(1.17e-06)]_45 chrXVI:109058-109514 9.45e-01 100 chrXIII:301670-302126 9.35e-01 100 chrVII:779479-779798 1.90e-13 37_[+3(9.70e-08)]_1_[-2(3.07e-10)]_\ 11 chrIV:1270325-1270464 1.74e-01 100 chrV:221524-221762 2.49e-01 100 chrX:663829-663929 2.81e-01 100 chrVII:1004102-1004396 3.40e-07 23_[-1(2.59e-06)]_13_[-2(1.22e-07)]_\ 22 chrIV:626498-626954 9.09e-01 100 chrXII:406944-407387 6.24e-01 100 chrIV:382673-383129 1.11e-01 58_[+1(9.27e-05)]_21 chrXVI:830031-830487 3.81e-01 100 chrXIV:230173-230420 4.86e-01 100 chrV:302883-303339 7.54e-01 100 chrVII:115350-115694 3.28e-05 22_[-1(4.79e-09)]_57 chrXIV:576701-577157 7.49e-01 100 chrXIV:88960-89689 2.51e-01 100 chrVII:561511-561760 9.50e-01 100 chrXI:520205-520321 3.80e-01 100 chrVIII:237765-238086 1.99e-04 36_[+1(2.04e-08)]_43 chrXIII:426300-426756 6.87e-02 31_[-2(5.02e-05)]_48 chrII:393188-393644 8.44e-01 100 chrXII:899122-899578 8.14e-01 100 chrXIII:220934-221142 6.83e-01 100 chrVIII:134185-134501 5.47e-12 37_[+3(1.67e-07)]_1_[-2(4.24e-09)]_\ 11 chrXIII:551979-552435 4.37e-01 100 chrVIII:34866-35391 7.72e-01 100 chrXVI:581934-582246 1.90e-10 28_[-1(6.09e-08)]_14_[-2(4.00e-10)]_\ 16 chrXVI:732025-732178 3.52e-01 100 chrIV:130647-130861 6.83e-01 100 chrV:469301-469595 1.72e-03 65_[-1(9.64e-07)]_14 chrIV:118357-118813 9.73e-02 51_[+3(6.19e-05)]_19 chrIV:1256904-1257258 3.65e-04 20_[+1(6.43e-07)]_59 chrXII:806521-806834 4.20e-01 100 chrV:78429-78965 4.66e-03 73_[-1(5.57e-06)]_6 chrXIII:169989-170434 2.85e-01 100 chrXI:46655-46970 5.21e-03 16_[+1(1.84e-06)]_63 chrVII:439552-439828 9.83e-01 100 chrXIII:887233-887689 3.51e-02 72_[+1(2.87e-05)]_7 chrV:434456-434784 1.06e-09 2_[-3(8.22e-14)]_68 chrXI:630490-630712 4.74e-01 100 chrXIII:195952-196288 5.15e-10 7_[+2(1.76e-10)]_44_[+1(5.20e-07)]_\ 7 chrXIV:500362-500801 5.08e-01 100 chrIV:1359507-1359722 6.92e-01 100 chrXVI:829107-829403 2.34e-01 100 chrIX:129881-130280 3.37e-01 100 chrV:354768-355161 9.50e-22 29_[+3(3.78e-19)]_1_[-2(3.07e-10)]_\ 19 chrXIII:753418-753874 6.91e-01 100 chrXIII:288101-288557 2.21e-01 100 chrVIII:382268-382724 3.18e-01 100 chrVI:64518-64685 7.19e-01 100 chrVIII:104928-105384 7.99e-01 100 chrXI:106372-106828 5.83e-01 100 chrVIII:358370-358745 1.99e-04 34_[+1(2.04e-08)]_45 chrXIV:339890-340346 3.77e-02 8_[+1(9.27e-05)]_71 chrVII:545513-545969 3.03e-01 100 chrXV:725371-725827 9.74e-01 100 chrXV:304866-305104 2.69e-01 100 chrIV:1095260-1095614 2.25e-04 46_[+1(2.04e-08)]_33 chrXIII:774594-775050 1.44e-01 100 chrVII:882434-883416 6.86e-01 100 chrV:288251-288676 3.58e-01 100 chrX:383219-383319 8.20e-01 100 chrIX:166048-166504 1.74e-01 100 chrIV:1352371-1352645 1.90e-10 17_[+2(4.00e-10)]_14_[+1(6.09e-08)]_\ 27 chrXII:88055-88511 9.82e-01 100 chrXVI:282387-282511 5.05e-01 100 chrIV:1465967-1466120 4.23e-01 100 chrXIII:761814-761998 9.84e-01 100 chrXV:967975-968343 1.48e-01 100 chrXV:60488-60944 5.93e-01 100 chrIV:1237366-1237822 7.99e-01 100 chrI:72864-73182 6.14e-01 100 chrXII:460380-460876 2.58e-01 100 chrII:60850-61306 5.56e-01 100 chrXV:723341-723563 2.24e-01 100 chrIV:359433-359822 6.71e-11 6_[-1(4.79e-09)]_37_[-2(1.34e-09)]_\ 15 chrXV:438457-438873 3.66e-05 34_[-1(4.79e-09)]_45 chrVIII:80833-81289 4.85e-01 100 chrXV:436369-436851 9.78e-01 100 chrXIV:721012-721468 9.91e-01 100 chrVII:366153-366481 8.41e-01 100 chrXII:348375-348831 8.35e-01 100 chrVI:226582-226925 2.25e-04 29_[+1(6.09e-08)]_50 chrXII:644970-645282 7.93e-01 100 chrXIII:504896-505139 4.51e-02 10_[-2(2.92e-05)]_69 chrIV:568733-569117 3.17e-08 13_[-1(8.98e-06)]_13_[-2(9.50e-10)]_\ 32 chrVII:148426-148882 9.38e-01 100 chrXIV:716187-716456 7.36e-01 100 chrXII:92379-92769 5.61e-04 30_[-1(5.20e-07)]_49 chrX:374264-374364 2.33e-08 24_[+1(8.41e-06)]_27_[+2(9.50e-10)]_\ 7 chrVIII:54390-54642 5.86e-01 100 chrVIII:375378-375721 9.54e-01 100 chrVII:480452-481224 5.52e-01 100 chrXII:201730-202320 2.25e-01 100 chrV:122266-122722 8.35e-01 100 chrVIII:126535-126991 8.00e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************