Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.033326
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.055763
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.073856
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.031339
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/background
Finished invoke:
  name: bg  status: 0  time: 0.018853
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 449.025319
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 54.829515
Invoking:
  centrimo -seqlen 336 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.260979
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.360345
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/background -primary BYNBDTGGCBYAGTKGKTARR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.356895
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/background -primary CGAACCSVKGAYCYYMBGRTT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.312909
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/background -primary TWWACAYCCRTACATYW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.296124
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/background -primary CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.217316
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.209265
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.207352
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/background -primary CCASAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.229394
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/background -primary CACCGTGS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.207151
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/background -primary CAMGGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.44444
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/background -primary AAGATWT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.198821
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/background -primary GACTSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.215205
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/background -primary ATAGTKTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.205962
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/background -primary CTTSTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.211539
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/background -primary AACACSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.186542
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/background --motif BYNBDTGGCBYAGTKGKTARR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.411961
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/background --motif CGAACCSVKGAYCYYMBGRTT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.171798
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/background --motif TWWACAYCCRTACATYW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.252723
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/background --motif CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.106178
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.097584
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.115342
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/background --motif CCASAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.116762
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/background --motif CACCGTGS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.126948
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/background --motif CAMGGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.093064
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/background --motif AAGATWT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.099772
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/background --motif GACTSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.106639
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/background --motif ATAGTKTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.109366
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/background --motif CTTSTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.08699
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/background --motif AACACSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/AWRI1631--HAA1.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.101156
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--HAA1/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.16625
Done