Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.021148
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.066464
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.074625
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.012672
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background
Finished invoke:
  name: bg  status: 0  time: 0.010168
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 535.637936
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 51.575813
Invoking:
  centrimo -seqlen 344 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.158439
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.473012
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background -primary DMCSMYTWMMCCACTSGGCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.277565
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background -primary WWACAYCCRTACATY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.278904
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background -primary CTTAAYCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.167259
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background -primary CACTAVAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.172871
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background -primary AGMGCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.183757
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.171782
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background -primary GCGCCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.180591
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background -primary AARAAAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.18182
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background -primary TGGCGYA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.166411
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background -primary ACTGAGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.16906
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background -primary CTATCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.148283
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background -primary TCAGAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.177557
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background -primary AATMCAAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.148995
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background -primary CAGWCGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.16901
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background -primary ATAGTGTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo15  status: 0  time: 0.173117
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background --motif DMCSMYTWMMCCACTSGGCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.155374
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background --motif WWACAYCCRTACATY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.153416
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background --motif CTTAAYCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.075444
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background --motif CACTAVAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.075208
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background --motif AGMGCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.073382
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.076531
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background --motif GCGCCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.0734669999999999
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background --motif AARAAAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.082045
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background --motif TGGCGYA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.078086
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background --motif ACTGAGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.073558
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background --motif CTATCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.075842
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background --motif TCAGAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.060415
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background --motif AATMCAAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.076197
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background --motif CAGWCGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.07696
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/background --motif ATAGTGTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/AWRI1631--CIN5.fa
Finished invoke:
  name: fimo15  status: 0  time: 0.075677
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/AWRI1631--CIN5/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.157897
Done