******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= intersect_memeout/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:81905-82334 1.0000 100 chrI:138966-139373 1.0000 100 chrI:142153-143715 1.0000 100 chrI:166170-166611 1.0000 100 chrI:181123-181504 1.0000 100 chrI:182232-183193 1.0000 100 chrII:9445-9986 1.0000 100 chrII:36232-36808 1.0000 100 chrII:44642-45390 1.0000 100 chrII:59833-61798 1.0000 100 chrII:87894-88575 1.0000 100 chrII:88938-90398 1.0000 100 chrII:165060-165446 1.0000 100 chrII:167753-169654 1.0000 100 chrII:181321-181689 1.0000 100 chrII:197248-197859 1.0000 100 chrII:226973-227365 1.0000 100 chrII:266180-266708 1.0000 100 chrII:326450-327111 1.0000 100 chrII:332297-333092 1.0000 100 chrII:347393-347964 1.0000 100 chrII:350594-351142 1.0000 100 chrII:405667-406361 1.0000 100 chrII:415493-416064 1.0000 100 chrII:476809-477775 1.0000 100 chrII:478952-479467 1.0000 100 chrII:592272-593403 1.0000 100 chrII:604052-607136 1.0000 100 chrII:642836-643262 1.0000 100 chrII:644936-645443 1.0000 100 chrII:680357-682451 1.0000 100 chrIII:73-623 1.0000 100 chrIII:30540-30906 1.0000 100 chrIII:82370-82667 1.0000 100 chrIII:90848-91140 1.0000 100 chrIII:123326-123827 1.0000 100 chrIII:127475-127916 1.0000 100 chrIII:141995-142976 1.0000 100 chrIII:149717-150208 1.0000 100 chrIII:162065-163901 1.0000 100 chrIII:168096-168571 1.0000 100 chrIII:177075-178805 1.0000 100 chrIII:227759-228543 1.0000 100 chrIII:295292-295913 1.0000 100 chrIII:308675-309497 1.0000 100 chrIII:315595-316047 1.0000 100 chrIV:83342-83975 1.0000 100 chrIV:117137-118226 1.0000 100 chrIV:129695-131017 1.0000 100 chrIV:216539-218074 1.0000 100 chrIV:221317-222366 1.0000 100 chrIV:229445-230749 1.0000 100 chrIV:305475-310221 1.0000 100 chrIV:321618-321975 1.0000 100 chrIV:340146-341833 1.0000 100 chrIV:358027-358493 1.0000 100 chrIV:359164-359835 1.0000 100 chrIV:410148-410778 1.0000 100 chrIV:411229-411665 1.0000 100 chrIV:433960-434916 1.0000 100 chrIV:437547-438050 1.0000 100 chrIV:465278-465615 1.0000 100 chrIV:488442-489155 1.0000 100 chrIV:490940-492704 1.0000 100 chrIV:519651-519967 1.0000 100 chrIV:520721-521189 1.0000 100 chrIV:568653-569337 1.0000 100 chrIV:579022-580713 1.0000 100 chrIV:619697-620200 1.0000 100 chrIV:644777-645387 1.0000 100 chrIV:667725-668280 1.0000 100 chrIV:802557-803033 1.0000 100 chrIV:835745-836304 1.0000 100 chrIV:884246-884653 1.0000 100 chrIV:946121-946675 1.0000 100 chrIV:980724-981163 1.0000 100 chrIV:992721-993246 1.0000 100 chrIV:1016951-1017526 1.0000 100 chrIV:1075263-1075760 1.0000 100 chrIV:1095123-1095660 1.0000 100 chrIV:1150719-1151168 1.0000 100 chrIV:1175742-1176116 1.0000 100 chrIV:1201515-1202073 1.0000 100 chrIV:1236390-1238528 1.0000 100 chrIV:1256799-1257306 1.0000 100 chrIV:1300605-1301345 1.0000 100 chrIV:1305370-1305873 1.0000 100 chrIV:1352052-1353080 1.0000 100 chrIV:1354602-1356088 1.0000 100 chrIV:1359417-1361120 1.0000 100 chrIV:1401182-1403337 1.0000 100 chrIV:1449809-1451364 1.0000 100 chrIX:68170-69579 1.0000 100 chrIX:98190-100050 1.0000 100 chrIX:174567-175525 1.0000 100 chrIX:183289-183779 1.0000 100 chrIX:197365-197897 1.0000 100 chrIX:210656-211079 1.0000 100 chrIX:248621-249000 1.0000 100 chrIX:254202-254580 1.0000 100 chrIX:257365-257945 1.0000 100 chrIX:299984-300491 1.0000 100 chrIX:315804-318478 1.0000 100 chrIX:322580-324393 1.0000 100 chrIX:325734-326313 1.0000 100 chrIX:370216-370767 1.0000 100 chrV:53484-54036 1.0000 100 chrV:61030-62166 1.0000 100 chrV:67132-69311 1.0000 100 chrV:85093-86993 1.0000 100 chrV:99902-100344 1.0000 100 chrV:117408-118320 1.0000 100 chrV:130836-131369 1.0000 100 chrV:135171-136039 1.0000 100 chrV:138440-140002 1.0000 100 chrV:140161-140905 1.0000 100 chrV:176899-177468 1.0000 100 chrV:207350-208194 1.0000 100 chrV:249777-250760 1.0000 100 chrV:270073-270664 1.0000 100 chrV:288138-288747 1.0000 100 chrV:305767-307409 1.0000 100 chrV:311709-312303 1.0000 100 chrV:354692-355378 1.0000 100 chrV:362148-363299 1.0000 100 chrV:396132-398191 1.0000 100 chrV:423076-425523 1.0000 100 chrV:431017-431940 1.0000 100 chrV:434377-435149 1.0000 100 chrV:435551-436031 1.0000 100 chrV:438527-438985 1.0000 100 chrV:441782-442754 1.0000 100 chrV:442975-443363 1.0000 100 chrV:469237-470190 1.0000 100 chrV:487086-487627 1.0000 100 chrV:492193-492574 1.0000 100 chrV:551015-551569 1.0000 100 chrVI:63968-65403 1.0000 100 chrVI:95469-95906 1.0000 100 chrVI:101009-101696 1.0000 100 chrVI:136816-137709 1.0000 100 chrVI:157843-158249 1.0000 100 chrVI:162008-162403 1.0000 100 chrVI:167193-167710 1.0000 100 chrVI:180673-181278 1.0000 100 chrVI:191003-191784 1.0000 100 chrVI:210423-211110 1.0000 100 chrVI:220064-222104 1.0000 100 chrVI:222719-225140 1.0000 100 chrVI:226487-226919 1.0000 100 chrVII:20242-20973 1.0000 100 chrVII:110361-110789 1.0000 100 chrVII:115314-115729 1.0000 100 chrVII:122051-123008 1.0000 100 chrVII:148048-149567 1.0000 100 chrVII:185407-185920 1.0000 100 chrVII:205300-205815 1.0000 100 chrVII:254119-254746 1.0000 100 chrVII:255192-255593 1.0000 100 chrVII:276999-278725 1.0000 100 chrVII:287159-287730 1.0000 100 chrVII:310381-312248 1.0000 100 chrVII:319247-320163 1.0000 100 chrVII:328369-329013 1.0000 100 chrVII:364903-366751 1.0000 100 chrVII:371199-371581 1.0000 100 chrVII:401401-401622 1.0000 100 chrVII:405458-405931 1.0000 100 chrVII:411970-412592 1.0000 100 chrVII:422873-423553 1.0000 100 chrVII:437249-439905 1.0000 100 chrVII:440236-442846 1.0000 100 chrVII:531270-531988 1.0000 100 chrVII:533829-535203 1.0000 100 chrVII:541707-542262 1.0000 100 chrVII:544090-544892 1.0000 100 chrVII:555085-555866 1.0000 100 chrVII:560742-561742 1.0000 100 chrVII:609301-610025 1.0000 100 chrVII:648009-648486 1.0000 100 chrVII:648772-649372 1.0000 100 chrVII:661524-661995 1.0000 100 chrVII:700407-701265 1.0000 100 chrVII:706717-707188 1.0000 100 chrVII:726372-728162 1.0000 100 chrVII:730949-731460 1.0000 100 chrVII:735978-736645 1.0000 100 chrVII:738892-739587 1.0000 100 chrVII:774092-774748 1.0000 100 chrVII:779384-779932 1.0000 100 chrVII:787063-788765 1.0000 100 chrVII:794063-794594 1.0000 100 chrVII:823338-823731 1.0000 100 chrVII:828396-829000 1.0000 100 chrVII:845377-846028 1.0000 100 chrVII:856732-856945 1.0000 100 chrVII:857207-857670 1.0000 100 chrVII:876170-878157 1.0000 100 chrVII:878555-879055 1.0000 100 chrVII:882425-883931 1.0000 100 chrVII:919995-920208 1.0000 100 chrVII:930712-931638 1.0000 100 chrVII:1004014-1004436 1.0000 100 chrVIII:34435-36320 1.0000 100 chrVIII:62548-62933 1.0000 100 chrVIII:74892-76293 1.0000 100 chrVIII:85069-85369 1.0000 100 chrVIII:103768-105401 1.0000 100 chrVIII:115838-116403 1.0000 100 chrVIII:125897-126326 1.0000 100 chrVIII:132799-133109 1.0000 100 chrVIII:134086-134676 1.0000 100 chrVIII:145849-146574 1.0000 100 chrVIII:147588-149436 1.0000 100 chrVIII:173679-175949 1.0000 100 chrVIII:237672-238146 1.0000 100 chrVIII:296759-297237 1.0000 100 chrVIII:358258-358797 1.0000 100 chrVIII:382686-383367 1.0000 100 chrVIII:388642-389007 1.0000 100 chrVIII:466807-467282 1.0000 100 chrVIII:475357-475917 1.0000 100 chrVIII:504838-506228 1.0000 100 chrVIII:555791-556611 1.0000 100 chrX:58959-59448 1.0000 100 chrX:73369-76862 1.0000 100 chrX:89853-90460 1.0000 100 chrX:115662-116246 1.0000 100 chrX:138918-140423 1.0000 100 chrX:156214-157898 1.0000 100 chrX:196793-197451 1.0000 100 chrX:204538-205042 1.0000 100 chrX:227739-228659 1.0000 100 chrX:233688-234209 1.0000 100 chrX:332271-334066 1.0000 100 chrX:354013-354482 1.0000 100 chrX:355178-355744 1.0000 100 chrX:374172-374833 1.0000 100 chrX:378216-378608 1.0000 100 chrX:390805-391339 1.0000 100 chrX:391825-392145 1.0000 100 chrX:396585-397020 1.0000 100 chrX:414788-415277 1.0000 100 chrX:415716-416247 1.0000 100 chrX:422691-423264 1.0000 100 chrX:424229-424722 1.0000 100 chrX:517640-518098 1.0000 100 chrX:523536-524440 1.0000 100 chrX:531527-532278 1.0000 100 chrX:538000-538883 1.0000 100 chrX:540702-542358 1.0000 100 chrX:542772-543360 1.0000 100 chrX:607889-609108 1.0000 100 chrX:617690-618163 1.0000 100 chrX:651081-651633 1.0000 100 chrX:651910-652981 1.0000 100 chrX:663641-664376 1.0000 100 chrX:702975-703661 1.0000 100 chrX:745061-745748 1.0000 100 chrXI:779-1083 1.0000 100 chrXI:46710-47010 1.0000 100 chrXI:67799-68041 1.0000 100 chrXI:74329-74879 1.0000 100 chrXI:83970-84462 1.0000 100 chrXI:107406-110155 1.0000 100 chrXI:118344-119033 1.0000 100 chrXI:140767-141492 1.0000 100 chrXI:157912-159648 1.0000 100 chrXI:162251-162763 1.0000 100 chrXI:219701-220140 1.0000 100 chrXI:302692-303224 1.0000 100 chrXI:307901-308467 1.0000 100 chrXI:313203-314017 1.0000 100 chrXI:333996-334901 1.0000 100 chrXI:382184-382464 1.0000 100 chrXI:430674-432464 1.0000 100 chrXI:457989-458959 1.0000 100 chrXI:490741-491460 1.0000 100 chrXI:513057-513605 1.0000 100 chrXI:517397-518172 1.0000 100 chrXI:578748-579381 1.0000 100 chrXI:617671-619280 1.0000 100 chrXII:47570-49239 1.0000 100 chrXII:92259-92877 1.0000 100 chrXII:167744-168264 1.0000 100 chrXII:198315-199722 1.0000 100 chrXII:201664-203020 1.0000 100 chrXII:214635-215070 1.0000 100 chrXII:231961-234262 1.0000 100 chrXII:241626-243447 1.0000 100 chrXII:261185-264277 1.0000 100 chrXII:282579-283951 1.0000 100 chrXII:348092-348780 1.0000 100 chrXII:366034-366575 1.0000 100 chrXII:369637-370308 1.0000 100 chrXII:370571-370928 1.0000 100 chrXII:374199-374695 1.0000 100 chrXII:400692-405588 1.0000 100 chrXII:424133-424492 1.0000 100 chrXII:426891-427466 1.0000 100 chrXII:448499-449051 1.0000 100 chrXII:459600-460737 1.0000 100 chrXII:498344-500130 1.0000 100 chrXII:522121-523314 1.0000 100 chrXII:592342-592820 1.0000 100 chrXII:605132-605617 1.0000 100 chrXII:628132-628786 1.0000 100 chrXII:656819-657214 1.0000 100 chrXII:673495-674540 1.0000 100 chrXII:713137-713620 1.0000 100 chrXII:731474-732387 1.0000 100 chrXII:734592-735018 1.0000 100 chrXII:780484-781883 1.0000 100 chrXII:783923-784521 1.0000 100 chrXII:793769-797616 1.0000 100 chrXII:818502-819694 1.0000 100 chrXII:875057-877325 1.0000 100 chrXII:897655-899711 1.0000 100 chrXII:920998-923751 1.0000 100 chrXII:932070-932534 1.0000 100 chrXII:962811-963303 1.0000 100 chrXII:975744-976213 1.0000 100 chrXII:1012139-1012798 1.0000 100 chrXII:1017687-1019409 1.0000 100 chrXII:1028181-1028625 1.0000 100 chrXII:1051825-1052227 1.0000 100 chrXIII:91437-92110 1.0000 100 chrXIII:131597-132111 1.0000 100 chrXIII:145885-147226 1.0000 100 chrXIII:168229-169052 1.0000 100 chrXIII:195921-196315 1.0000 100 chrXIII:225142-226647 1.0000 100 chrXIII:258945-259446 1.0000 100 chrXIII:290564-291386 1.0000 100 chrXIII:296730-298922 1.0000 100 chrXIII:320918-321327 1.0000 100 chrXIII:352064-353202 1.0000 100 chrXIII:362932-363439 1.0000 100 chrXIII:372179-372668 1.0000 100 chrXIII:379007-379656 1.0000 100 chrXIII:420320-420874 1.0000 100 chrXIII:463330-463904 1.0000 100 chrXIII:480378-480837 1.0000 100 chrXIII:504904-505239 1.0000 100 chrXIII:549881-553312 1.0000 100 chrXIII:572581-573166 1.0000 100 chrXIII:586354-586912 1.0000 100 chrXIII:731980-733573 1.0000 100 chrXIII:747668-748168 1.0000 100 chrXIII:753002-755143 1.0000 100 chrXIII:808026-808559 1.0000 100 chrXIII:837728-838273 1.0000 100 chrXIII:861182-861414 1.0000 100 chrXIV:61512-64460 1.0000 100 chrXIV:88921-89741 1.0000 100 chrXIV:96000-96477 1.0000 100 chrXIV:102570-103218 1.0000 100 chrXIV:104583-105663 1.0000 100 chrXIV:169385-169978 1.0000 100 chrXIV:229619-231019 1.0000 100 chrXIV:241385-241763 1.0000 100 chrXIV:330774-331663 1.0000 100 chrXIV:374667-375142 1.0000 100 chrXIV:442788-444809 1.0000 100 chrXIV:493700-495701 1.0000 100 chrXIV:499304-500756 1.0000 100 chrXIV:518738-519144 1.0000 100 chrXIV:546536-547676 1.0000 100 chrXIV:560543-560923 1.0000 100 chrXIV:568053-568564 1.0000 100 chrXIV:569624-570088 1.0000 100 chrXIV:631699-632145 1.0000 100 chrXIV:632406-632930 1.0000 100 chrXIV:715960-716629 1.0000 100 chrXIV:725926-726595 1.0000 100 chrXV:28422-30887 1.0000 100 chrXV:79712-80161 1.0000 100 chrXV:92720-94807 1.0000 100 chrXV:110850-111281 1.0000 100 chrXV:113501-114961 1.0000 100 chrXV:159209-160145 1.0000 100 chrXV:161097-161810 1.0000 100 chrXV:216279-216711 1.0000 100 chrXV:226405-226909 1.0000 100 chrXV:228084-228648 1.0000 100 chrXV:252839-254695 1.0000 100 chrXV:274452-275009 1.0000 100 chrXV:281955-282623 1.0000 100 chrXV:287300-288438 1.0000 100 chrXV:300885-301725 1.0000 100 chrXV:340113-340744 1.0000 100 chrXV:353895-354318 1.0000 100 chrXV:407604-408233 1.0000 100 chrXV:438440-439030 1.0000 100 chrXV:464275-464719 1.0000 100 chrXV:487430-487767 1.0000 100 chrXV:504982-505504 1.0000 100 chrXV:571708-572160 1.0000 100 chrXV:594309-594679 1.0000 100 chrXV:663438-664247 1.0000 100 chrXV:678041-679171 1.0000 100 chrXV:710118-710489 1.0000 100 chrXV:779659-780996 1.0000 100 chrXV:832230-832847 1.0000 100 chrXV:866525-868109 1.0000 100 chrXV:901445-901673 1.0000 100 chrXV:968129-968423 1.0000 100 chrXV:976376-976706 1.0000 100 chrXV:978802-979160 1.0000 100 chrXV:979739-981305 1.0000 100 chrXV:1027826-1029548 1.0000 100 chrXVI:55848-56434 1.0000 100 chrXVI:75150-76864 1.0000 100 chrXVI:188596-188933 1.0000 100 chrXVI:209699-210498 1.0000 100 chrXVI:280536-283275 1.0000 100 chrXVI:302633-304350 1.0000 100 chrXVI:338604-339161 1.0000 100 chrXVI:378635-379011 1.0000 100 chrXVI:404535-407782 1.0000 100 chrXVI:435666-436198 1.0000 100 chrXVI:519282-520545 1.0000 100 chrXVI:559906-560516 1.0000 100 chrXVI:572174-572609 1.0000 100 chrXVI:581817-582361 1.0000 100 chrXVI:622279-622866 1.0000 100 chrXVI:689356-689875 1.0000 100 chrXVI:699845-700681 1.0000 100 chrXVI:731636-732310 1.0000 100 chrXVI:744073-744623 1.0000 100 chrXVI:768407-769503 1.0000 100 chrXVI:775631-776045 1.0000 100 chrXVI:794459-796095 1.0000 100 chrXVI:810573-811839 1.0000 100 chrXVI:819311-820274 1.0000 100 chrXVI:821644-822199 1.0000 100 chrXVI:856714-857163 1.0000 100 chrXVI:860155-860717 1.0000 100 chrXVI:879749-880576 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme intersect_memeout/seqs-centered -oc intersect_memeout/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile intersect_memeout/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 439 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 43900 N= 439 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.301 C 0.199 G 0.199 T 0.301 Background letter frequencies (from intersect_memeout/background): A 0.312 C 0.188 G 0.188 T 0.312 ******************************************************************************** ******************************************************************************** MOTIF AGGTCCBSGGTTCGATYCCSVG MEME-1 width = 22 sites = 93 llr = 1647 E-value = 3.7e-348 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGGTCCBSGGTTCGATYCCSVG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 6232:2::2::::3a2::1:3: pos.-specific C 12:18644::::a::25a7641 probability G 267::2367a:::7:1:::446 matrix T :1:72:3:1:aa:::55:3::3 bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 * ** * * Relative 1.4 * * ****** * Entropy 1.2 * * ****** * * (25.5 bits) 1.0 * * ******** **** 0.7 ** ** ******** ****** 0.5 *************** ****** 0.2 ********************** 0.0 ---------------------- Multilevel AGGTCCCGGGTTCGATTCCCCG consensus G AATAGCA A C TGGT sequence T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGTCCBSGGTTCGATYCCSVG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chrIII:123326-123827 - 59 5.14e-13 AGGGTGCGGG AGGTCCCGGGTTCGAGTCCCGG CTCGCCCCAC chrIV:1075263-1075760 - 19 1.05e-11 CACACGGCAA AGGTCCCGAGTTCGATCCTCGG TTGGAACATT chrXVI:860155-860717 + 35 3.05e-11 TGCCATCGTT GGGCCCCCGGTTCGATTCCGGG CTTGCGCAGA chrXV:226405-226909 - 13 3.05e-11 TGCCATCGTT GGGCCCCCGGTTCGATTCCGGG CTTGCGCAAA chrX:531527-532278 + 17 3.05e-11 TGCCATCGTT GGGCCCCCGGTTCGATTCCGGG CTTGCGCAGT chrVII:845377-846028 + 38 3.05e-11 TGCCATCGTT GGGCCCCCGGTTCGATTCCGGG CTTGCGCAAT chrVI:180673-181278 - 57 3.05e-11 TGCCATCGTT GGGCCCCCGGTTCGATTCCGGG CTTGCGCAGT chrX:115662-116246 - 44 6.88e-11 TTTCACCGTG GAGACCGGGGTTCGACTCCCCG TATCGGAGTA chrV:487086-487627 - 33 6.88e-11 TTTCACCGTG GAGACCGGGGTTCGACTCCCCG TATCGGAGTA chrV:176899-177468 + 8 6.88e-11 CACCGTG GAGACCGGGGTTCGACTCCCCG TATCGGAGTA chrIX:370216-370767 + 18 6.88e-11 TTTCACCGTG GAGACCGGGGTTCGACTCCCCG TATCGGAGTA chrIX:197365-197897 + 54 6.88e-11 TCTCACCGTG GAGACCGGGGTTCGACTCCCCG CTTCGGAGTT chrIV:1016951-1017526 - 27 6.88e-11 TCTCACCGTG GAGACCGGGGTTCGACTCCCCG CTTCGGAGTT chrIII:82370-82667 - 2 6.88e-11 TTTCACCGTG GAGACCGGGGTTCGACTCCCCG T chrII:644936-645443 + 70 6.88e-11 TTTCACCGTG GAGACCGGGGTTCGACTCCCCG TATCGGAGT chrIV:1256799-1257306 - 14 1.27e-10 TCCCAAGCAT GGGGCCCGGGTTCGATTCCCGG CTTCCGCATT chrXV:464275-464719 + 76 2.27e-10 AGCATGCGAG AGGCCCTGGGTTCAATTCCCAG CTC chrXIII:195921-196315 - 9 2.27e-10 AGCATGCGAG AGGCCCTGGGTTCAATTCCCAG CTCGCCCC chrXVI:581817-582361 + 67 2.99e-10 CTTAATCATA AGGTTAGGGGTTCGAGCCCCCT ACAGGGCTTT chrXIII:480378-480837 - 72 2.99e-10 AATCATA AGGTTAGGGGTTCGAGCCCCCT ACAGGGCTTC chrX:414788-415277 + 27 2.99e-10 CTTAATCATA AGGTTAGGGGTTCGAGCCCCCT ACAGGGCTAA chrVI:226487-226919 - 44 2.99e-10 CTTAATCATA AGGTTAGGGGTTCGAGCCCCCT ACAGGGCTTA chrV:435551-436031 - 20 2.99e-10 CTTAATCATA AGGTTAGGGGTTCGAGCCCCCT ACAGGGCTTT chrIX:299984-300491 - 49 2.99e-10 CTTAATCATA AGGTTAGGGGTTCGAGCCCCCT ACAGGGCTAT chrIV:1201515-1202073 + 50 2.99e-10 CTTAATCATA AGGTTAGGGGTTCGAGCCCCCT ACAGGGCTAA chrIV:488442-489155 - 57 3.44e-10 TACACGGCGA AGATCCCGAGTTCGAACCTCGG TTGGATCAGA chrII:326450-327111 - 70 3.44e-10 ACACGGCGA AGATCCCGAGTTCGAACCTCGG TTGGATCAAA chrXV:663438-664247 - 28 3.94e-10 AACACGCAGA ACGTCCCCAGTTCGATCCTGGG CGAAATCATT chrXIV:569624-570088 - 70 3.94e-10 ATAACGCGG GGATCAGCGGTTCGATCCCGCT AGAGACCATT chrXIII:586354-586912 - 62 3.94e-10 AACACGCAGA ACGTCCCCAGTTCGATCCTGGG CGAAATCATT chrXIII:420320-420874 - 50 3.94e-10 AACACGCAGA ACGTCCCCAGTTCGATCCTGGG CGAAATCATT chrXI:307901-308467 - 19 3.94e-10 AACACGCAGA ACGTCCCCAGTTCGATCCTGGG CGAAATCAAT chrX:378216-378608 + 43 3.94e-10 AACACGCAGA ACGTCCCCAGTTCGATCCTGGG CGAAATCAAT chrVII:823338-823731 + 42 3.94e-10 AACACGCAGA ACGTCCCCAGTTCGATCCTGGG CGAAATCATT chrVII:411970-412592 - 72 3.94e-10 ACGCAGA ACGTCCCCAGTTCGATCCTGGG CGAAATCAAG chrV:551015-551569 - 52 3.94e-10 AATAACGCGG GGATCAGCGGTTCGATCCCGCT AGAGACCATT chrV:438527-438985 + 39 3.94e-10 AACACGCAGA ACGTCCCCAGTTCGATCCTGGG CGAAATCAAT chrIV:667725-668280 - 63 3.94e-10 AATAACGCGG GGATCAGCGGTTCGATCCCGCT AGAGACCATT chrII:197248-197859 + 35 3.94e-10 AATAACGCGG GGATCAGCGGTTCGATCCCGCT AGAGACCATT chrXIV:96000-96477 - 61 8.50e-10 TTCCAAGGTG GGGACACGGGTTCGATTCTCGT ACCGCTCAAA chrVII:779384-779932 + 51 8.50e-10 TTCCAAGGTG GGGACACGGGTTCGATTCTCGT ACCGCTCAAG chrVIII:134086-134676 + 33 1.23e-09 TTTGATCCGG ACAACCCCGGTTCGAATCCGGG TAGGACCTTT chrV:130836-131369 - 38 1.23e-09 TTTGATCCGA ACAACCCCGGTTCGAATCCGGG TAAGACCTAT chrIII:168096-168571 - 26 1.23e-09 TTTGATCCGG ACAACCCCGGTTCGAATCCGGG TAGGACCTTT chrII:350594-351142 + 52 1.23e-09 TTTGATCCGG ACAACCCCGGTTCGAATCCGGG TAAGACCTTA chrXV:438440-439030 + 25 1.55e-09 GGATACCGAA ATGTCAGGGGTTCGAGCCCCCT ATGAGGAGTT chrXI:578748-579381 + 17 1.55e-09 GGATACCGAA ATGTCAGGGGTTCGAGCCCCCT ATGAGGAGTT chrXVI:622279-622866 - 26 3.41e-09 AGTTATCTGG AGGTCCTGTGTTCGATCCACAG AATTCGCATT chrXVI:559906-560516 - 46 3.41e-09 AGTTATCTGG AGGTCCTGTGTTCGATCCACAG AATTCGCATT chrXIV:374667-375142 + 76 3.41e-09 AGTCATCTGG AGGTCCTGTGTTCGATCCACAG AGT chrVIII:358258-358797 - 9 3.41e-09 AGTTATCTGG AGGTCCTGTGTTCGATCCACAG AATTCGCA chrIV:1095123-1095660 - 37 3.41e-09 AGATATCTGG AGGTCCTGTGTTCGATCCACAG AGTTCGCATT chrXIII:747668-748168 - 33 3.80e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCAT CGTGAGTGTT chrXIII:131597-132111 - 30 3.80e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCAT CGTGAGTGCT chrXI:162251-162763 - 39 3.80e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCAT CGTGAGTGTT chrX:374172-374833 - 62 3.80e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCAT CGTGAGTGCT chrXVI:856714-857163 + 57 4.68e-09 AGCATGGGAG AGGTCTCCGGTTCGATTCCGGA CTCGTCCATT chrXI:219701-220140 + 68 4.68e-09 AGCATGGGAG AGGTCTCCGGTTCGATTCCGGA CTCGTCCAAT chrVII:774092-774748 + 23 4.68e-09 AGCATGGGAG AGGTCTCCGGTTCGATTCCGGA CTCGTCCAAA chrIV:410148-410778 + 10 4.68e-09 GCATGGGAG AGGTCTCCGGTTCGATTCCGGA CTCGTCCAAA chrXIII:463330-463904 + 30 5.20e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCG TCGCGGAGAT chrXII:426891-427466 + 46 5.20e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCG TCGCGGAGAA chrXI:513057-513605 - 60 5.20e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCG TCGCGGAGAT chrX:540702-542358 + 71 5.20e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCG TCGCGGAG chrX:204538-205042 + 38 5.20e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCG TCGCGGAGAT chrVII:531270-531988 + 74 5.20e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCG TCGCG chrIV:568653-569337 + 62 5.20e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCG TCGCGGAGAA chrII:405667-406361 + 39 5.20e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCG TCGCGGAGAT chrXIII:808026-808559 - 12 5.76e-09 TCTGATCCGA ACAACCCCAGTTCGAATCCGGG TGGGACCTTC chrXIV:560543-560923 - 19 1.99e-08 AGTAATGTGG AGATCATCGGTTCAAATCCGAT TGGAAGCATA chrVIII:115838-116403 - 45 1.99e-08 AGTAATGTGG AGATCATCGGTTCAAATCCGAT TGGAAGCATT chrIX:174567-175525 + 79 1.99e-08 AGTAATGTGG AGATCATCGGTTCAAATCCGAT chrII:266180-266708 + 28 1.99e-08 AGTAATGTGG AGATCATCGGTTCAAATCCGAT TGGAAGCATT chrXIII:572581-573166 - 68 2.37e-08 CATAATCTGA AGGTCGAGAGTTCGAACCTCCC CTGGAGCACA chrX:422691-423264 + 53 2.37e-08 CATAATCTGA AGGTCGAGAGTTCGAACCTCCC CTGGAGCACA chrX:390805-391339 - 30 2.37e-08 CATAATCTGA AGGTCGAGAGTTCGAACCTCCC CTGGAGCATA chrIV:884246-884653 + 65 2.58e-08 AGCAACGCGA CCGTCGTGGGTTCAAACCCCAC CTCGAGCACT chrXV:228084-228648 + 60 5.00e-08 GTTAATCGCA AGATCGTGAGTTCAACCCTCAC TGGGGTCGTT chrXIV:632406-632930 + 26 5.00e-08 GTTAATCGCA AGATCGTGAGTTCAACCCTCAC TGGGGTCGTT chrXII:975744-976213 - 63 5.00e-08 GTTAATCGCA AGATCGTGAGTTCAACCCTCAC TGGGGTCGTT chrVII:730949-731460 + 27 5.00e-08 GTTAATCGCA AGATCGTGAGTTCAACCCTCAC TGGGGTCGTT chrXVI:435666-436198 - 20 7.92e-08 GCAAATCTGT TGGTCCTTAGTTCGATCCTGAG TGCGAGCTTT chrII:642836-643262 - 17 7.92e-08 GCAAATCTGT TGGTCCTTAGTTCGATCCTGAG TGCGAGCTTC chrVIII:466807-467282 + 38 9.18e-08 TGTAATGCAA AGGTCGCTAGTTCAATTCTGGC AGGTGGCATT chrXIII:837728-838273 + 37 1.40e-07 CGAAATCTTG AGATCGGGCGTTCGACTCGCCC CCGGGAGATA chrIV:946121-946675 + 24 1.40e-07 CGAAATCTTG AGATCGGGCGTTCGACTCGCCC CCGGGAGATT chrXVI:744073-744623 + 29 2.09e-07 TGTAATGCAA AGGTCGTTAGTTCAATTCTGAC AGGTGGCAAA chrV:492193-492574 - 27 2.09e-07 ACGAACCAGA AGATTCCAGGTTCAAGTCCTGG CGGGGAAGGA chrXVI:338604-339161 - 24 2.23e-07 CATAACCCTG ATGTCCTCGGATCGAAACCGAG CGGCGCTAAA chrX:517640-518098 - 3 2.23e-07 CATAACCCTG ATGTCCTCGGATCGAAACCGAG CG chrIII:149717-150208 + 50 2.23e-07 CATAACCCTG ATGTCCTCGGATCGAAACCGAG CGGCGCTATT chrXIII:379007-379656 - 30 3.23e-07 TGCAATCGAA GGGTTGCAGGTTCAATTCCTGT CCGTTTCAAT chrX:415716-416247 - 8 3.23e-07 TGCAATCGAA GGGTTGCAGGTTCAATTCCTGT CCGTTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGTCCBSGGTTCGATYCCSVG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123326-123827 5.1e-13 58_[-1]_20 chrIV:1075263-1075760 1.1e-11 18_[-1]_60 chrXVI:860155-860717 3.1e-11 34_[+1]_44 chrXV:226405-226909 3.1e-11 12_[-1]_66 chrX:531527-532278 3.1e-11 16_[+1]_62 chrVII:845377-846028 3.1e-11 37_[+1]_41 chrVI:180673-181278 3.1e-11 56_[-1]_22 chrX:115662-116246 6.9e-11 43_[-1]_35 chrV:487086-487627 6.9e-11 32_[-1]_46 chrV:176899-177468 6.9e-11 7_[+1]_71 chrIX:370216-370767 6.9e-11 17_[+1]_61 chrIX:197365-197897 6.9e-11 53_[+1]_25 chrIV:1016951-1017526 6.9e-11 26_[-1]_52 chrIII:82370-82667 6.9e-11 1_[-1]_77 chrII:644936-645443 6.9e-11 69_[+1]_9 chrIV:1256799-1257306 1.3e-10 13_[-1]_65 chrXV:464275-464719 2.3e-10 75_[+1]_3 chrXIII:195921-196315 2.3e-10 8_[-1]_70 chrXVI:581817-582361 3e-10 66_[+1]_12 chrXIII:480378-480837 3e-10 71_[-1]_7 chrX:414788-415277 3e-10 26_[+1]_52 chrVI:226487-226919 3e-10 43_[-1]_35 chrV:435551-436031 3e-10 19_[-1]_59 chrIX:299984-300491 3e-10 48_[-1]_30 chrIV:1201515-1202073 3e-10 49_[+1]_29 chrIV:488442-489155 3.4e-10 56_[-1]_22 chrII:326450-327111 3.4e-10 69_[-1]_9 chrXV:663438-664247 3.9e-10 27_[-1]_51 chrXIV:569624-570088 3.9e-10 69_[-1]_9 chrXIII:586354-586912 3.9e-10 61_[-1]_17 chrXIII:420320-420874 3.9e-10 49_[-1]_29 chrXI:307901-308467 3.9e-10 18_[-1]_60 chrX:378216-378608 3.9e-10 42_[+1]_36 chrVII:823338-823731 3.9e-10 41_[+1]_37 chrVII:411970-412592 3.9e-10 71_[-1]_7 chrV:551015-551569 3.9e-10 51_[-1]_27 chrV:438527-438985 3.9e-10 38_[+1]_40 chrIV:667725-668280 3.9e-10 62_[-1]_16 chrII:197248-197859 3.9e-10 34_[+1]_44 chrXIV:96000-96477 8.5e-10 60_[-1]_18 chrVII:779384-779932 8.5e-10 50_[+1]_28 chrVIII:134086-134676 1.2e-09 32_[+1]_46 chrV:130836-131369 1.2e-09 37_[-1]_41 chrIII:168096-168571 1.2e-09 25_[-1]_53 chrII:350594-351142 1.2e-09 51_[+1]_27 chrXV:438440-439030 1.6e-09 24_[+1]_54 chrXI:578748-579381 1.6e-09 16_[+1]_62 chrXVI:622279-622866 3.4e-09 25_[-1]_53 chrXVI:559906-560516 3.4e-09 45_[-1]_33 chrXIV:374667-375142 3.4e-09 75_[+1]_3 chrVIII:358258-358797 3.4e-09 8_[-1]_70 chrIV:1095123-1095660 3.4e-09 36_[-1]_42 chrXIII:747668-748168 3.8e-09 32_[-1]_46 chrXIII:131597-132111 3.8e-09 29_[-1]_49 chrXI:162251-162763 3.8e-09 38_[-1]_40 chrX:374172-374833 3.8e-09 61_[-1]_17 chrXVI:856714-857163 4.7e-09 56_[+1]_22 chrXI:219701-220140 4.7e-09 67_[+1]_11 chrVII:774092-774748 4.7e-09 22_[+1]_56 chrIV:410148-410778 4.7e-09 9_[+1]_69 chrXIII:463330-463904 5.2e-09 29_[+1]_49 chrXII:426891-427466 5.2e-09 45_[+1]_33 chrXI:513057-513605 5.2e-09 59_[-1]_19 chrX:540702-542358 5.2e-09 70_[+1]_8 chrX:204538-205042 5.2e-09 37_[+1]_41 chrVII:531270-531988 5.2e-09 73_[+1]_5 chrIV:568653-569337 5.2e-09 61_[+1]_17 chrII:405667-406361 5.2e-09 38_[+1]_40 chrXIII:808026-808559 5.8e-09 11_[-1]_67 chrXIV:560543-560923 2e-08 18_[-1]_60 chrVIII:115838-116403 2e-08 44_[-1]_34 chrIX:174567-175525 2e-08 78_[+1] chrII:266180-266708 2e-08 27_[+1]_51 chrXIII:572581-573166 2.4e-08 67_[-1]_11 chrX:422691-423264 2.4e-08 52_[+1]_26 chrX:390805-391339 2.4e-08 29_[-1]_49 chrIV:884246-884653 2.6e-08 64_[+1]_14 chrXV:228084-228648 5e-08 59_[+1]_19 chrXIV:632406-632930 5e-08 25_[+1]_53 chrXII:975744-976213 5e-08 62_[-1]_16 chrVII:730949-731460 5e-08 26_[+1]_52 chrXVI:435666-436198 7.9e-08 19_[-1]_59 chrII:642836-643262 7.9e-08 16_[-1]_62 chrVIII:466807-467282 9.2e-08 37_[+1]_41 chrXIII:837728-838273 1.4e-07 36_[+1]_42 chrIV:946121-946675 1.4e-07 23_[+1]_55 chrXVI:744073-744623 2.1e-07 28_[+1]_50 chrV:492193-492574 2.1e-07 26_[-1]_52 chrXVI:338604-339161 2.2e-07 23_[-1]_55 chrX:517640-518098 2.2e-07 2_[-1]_76 chrIII:149717-150208 2.2e-07 49_[+1]_29 chrXIII:379007-379656 3.2e-07 29_[-1]_49 chrX:415716-416247 3.2e-07 7_[-1]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGTCCBSGGTTCGATYCCSVG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGGTCCBSGGTTCGATYCCSVG width=22 seqs=93 chrIII:123326-123827 ( 59) AGGTCCCGGGTTCGAGTCCCGG 1 chrIV:1075263-1075760 ( 19) AGGTCCCGAGTTCGATCCTCGG 1 chrXVI:860155-860717 ( 35) GGGCCCCCGGTTCGATTCCGGG 1 chrXV:226405-226909 ( 13) GGGCCCCCGGTTCGATTCCGGG 1 chrX:531527-532278 ( 17) GGGCCCCCGGTTCGATTCCGGG 1 chrVII:845377-846028 ( 38) GGGCCCCCGGTTCGATTCCGGG 1 chrVI:180673-181278 ( 57) GGGCCCCCGGTTCGATTCCGGG 1 chrX:115662-116246 ( 44) GAGACCGGGGTTCGACTCCCCG 1 chrV:487086-487627 ( 33) GAGACCGGGGTTCGACTCCCCG 1 chrV:176899-177468 ( 8) GAGACCGGGGTTCGACTCCCCG 1 chrIX:370216-370767 ( 18) GAGACCGGGGTTCGACTCCCCG 1 chrIX:197365-197897 ( 54) GAGACCGGGGTTCGACTCCCCG 1 chrIV:1016951-1017526 ( 27) GAGACCGGGGTTCGACTCCCCG 1 chrIII:82370-82667 ( 2) GAGACCGGGGTTCGACTCCCCG 1 chrII:644936-645443 ( 70) GAGACCGGGGTTCGACTCCCCG 1 chrIV:1256799-1257306 ( 14) GGGGCCCGGGTTCGATTCCCGG 1 chrXV:464275-464719 ( 76) AGGCCCTGGGTTCAATTCCCAG 1 chrXIII:195921-196315 ( 9) AGGCCCTGGGTTCAATTCCCAG 1 chrXVI:581817-582361 ( 67) AGGTTAGGGGTTCGAGCCCCCT 1 chrXIII:480378-480837 ( 72) AGGTTAGGGGTTCGAGCCCCCT 1 chrX:414788-415277 ( 27) AGGTTAGGGGTTCGAGCCCCCT 1 chrVI:226487-226919 ( 44) AGGTTAGGGGTTCGAGCCCCCT 1 chrV:435551-436031 ( 20) AGGTTAGGGGTTCGAGCCCCCT 1 chrIX:299984-300491 ( 49) AGGTTAGGGGTTCGAGCCCCCT 1 chrIV:1201515-1202073 ( 50) AGGTTAGGGGTTCGAGCCCCCT 1 chrIV:488442-489155 ( 57) AGATCCCGAGTTCGAACCTCGG 1 chrII:326450-327111 ( 70) AGATCCCGAGTTCGAACCTCGG 1 chrXV:663438-664247 ( 28) ACGTCCCCAGTTCGATCCTGGG 1 chrXIV:569624-570088 ( 70) GGATCAGCGGTTCGATCCCGCT 1 chrXIII:586354-586912 ( 62) ACGTCCCCAGTTCGATCCTGGG 1 chrXIII:420320-420874 ( 50) ACGTCCCCAGTTCGATCCTGGG 1 chrXI:307901-308467 ( 19) ACGTCCCCAGTTCGATCCTGGG 1 chrX:378216-378608 ( 43) ACGTCCCCAGTTCGATCCTGGG 1 chrVII:823338-823731 ( 42) ACGTCCCCAGTTCGATCCTGGG 1 chrVII:411970-412592 ( 72) ACGTCCCCAGTTCGATCCTGGG 1 chrV:551015-551569 ( 52) GGATCAGCGGTTCGATCCCGCT 1 chrV:438527-438985 ( 39) ACGTCCCCAGTTCGATCCTGGG 1 chrIV:667725-668280 ( 63) GGATCAGCGGTTCGATCCCGCT 1 chrII:197248-197859 ( 35) GGATCAGCGGTTCGATCCCGCT 1 chrXIV:96000-96477 ( 61) GGGACACGGGTTCGATTCTCGT 1 chrVII:779384-779932 ( 51) GGGACACGGGTTCGATTCTCGT 1 chrVIII:134086-134676 ( 33) ACAACCCCGGTTCGAATCCGGG 1 chrV:130836-131369 ( 38) ACAACCCCGGTTCGAATCCGGG 1 chrIII:168096-168571 ( 26) ACAACCCCGGTTCGAATCCGGG 1 chrII:350594-351142 ( 52) ACAACCCCGGTTCGAATCCGGG 1 chrXV:438440-439030 ( 25) ATGTCAGGGGTTCGAGCCCCCT 1 chrXI:578748-579381 ( 17) ATGTCAGGGGTTCGAGCCCCCT 1 chrXVI:622279-622866 ( 26) AGGTCCTGTGTTCGATCCACAG 1 chrXVI:559906-560516 ( 46) AGGTCCTGTGTTCGATCCACAG 1 chrXIV:374667-375142 ( 76) AGGTCCTGTGTTCGATCCACAG 1 chrVIII:358258-358797 ( 9) AGGTCCTGTGTTCGATCCACAG 1 chrIV:1095123-1095660 ( 37) AGGTCCTGTGTTCGATCCACAG 1 chrXIII:747668-748168 ( 33) AGATTATGGGTTCGACCCCCAT 1 chrXIII:131597-132111 ( 30) AGATTATGGGTTCGACCCCCAT 1 chrXI:162251-162763 ( 39) AGATTATGGGTTCGACCCCCAT 1 chrX:374172-374833 ( 62) AGATTATGGGTTCGACCCCCAT 1 chrXVI:856714-857163 ( 57) AGGTCTCCGGTTCGATTCCGGA 1 chrXI:219701-220140 ( 68) AGGTCTCCGGTTCGATTCCGGA 1 chrVII:774092-774748 ( 23) AGGTCTCCGGTTCGATTCCGGA 1 chrIV:410148-410778 ( 10) AGGTCTCCGGTTCGATTCCGGA 1 chrXIII:463330-463904 ( 30) CAGATCGGGGTTCAATTCCCCG 1 chrXII:426891-427466 ( 46) CAGATCGGGGTTCAATTCCCCG 1 chrXI:513057-513605 ( 60) CAGATCGGGGTTCAATTCCCCG 1 chrX:540702-542358 ( 71) CAGATCGGGGTTCAATTCCCCG 1 chrX:204538-205042 ( 38) CAGATCGGGGTTCAATTCCCCG 1 chrVII:531270-531988 ( 74) CAGATCGGGGTTCAATTCCCCG 1 chrIV:568653-569337 ( 62) CAGATCGGGGTTCAATTCCCCG 1 chrII:405667-406361 ( 39) CAGATCGGGGTTCAATTCCCCG 1 chrXIII:808026-808559 ( 12) ACAACCCCAGTTCGAATCCGGG 1 chrXIV:560543-560923 ( 19) AGATCATCGGTTCAAATCCGAT 1 chrVIII:115838-116403 ( 45) AGATCATCGGTTCAAATCCGAT 1 chrIX:174567-175525 ( 79) AGATCATCGGTTCAAATCCGAT 1 chrII:266180-266708 ( 28) AGATCATCGGTTCAAATCCGAT 1 chrXIII:572581-573166 ( 68) AGGTCGAGAGTTCGAACCTCCC 1 chrX:422691-423264 ( 53) AGGTCGAGAGTTCGAACCTCCC 1 chrX:390805-391339 ( 30) AGGTCGAGAGTTCGAACCTCCC 1 chrIV:884246-884653 ( 65) CCGTCGTGGGTTCAAACCCCAC 1 chrXV:228084-228648 ( 60) AGATCGTGAGTTCAACCCTCAC 1 chrXIV:632406-632930 ( 26) AGATCGTGAGTTCAACCCTCAC 1 chrXII:975744-976213 ( 63) AGATCGTGAGTTCAACCCTCAC 1 chrVII:730949-731460 ( 27) AGATCGTGAGTTCAACCCTCAC 1 chrXVI:435666-436198 ( 20) TGGTCCTTAGTTCGATCCTGAG 1 chrII:642836-643262 ( 17) TGGTCCTTAGTTCGATCCTGAG 1 chrVIII:466807-467282 ( 38) AGGTCGCTAGTTCAATTCTGGC 1 chrXIII:837728-838273 ( 37) AGATCGGGCGTTCGACTCGCCC 1 chrIV:946121-946675 ( 24) AGATCGGGCGTTCGACTCGCCC 1 chrXVI:744073-744623 ( 29) AGGTCGTTAGTTCAATTCTGAC 1 chrV:492193-492574 ( 27) AGATTCCAGGTTCAAGTCCTGG 1 chrXVI:338604-339161 ( 24) ATGTCCTCGGATCGAAACCGAG 1 chrX:517640-518098 ( 3) ATGTCCTCGGATCGAAACCGAG 1 chrIII:149717-150208 ( 50) ATGTCCTCGGATCGAAACCGAG 1 chrXIII:379007-379656 ( 30) GGGTTGCAGGTTCAATTCCTGT 1 chrX:415716-416247 ( 8) GGGTTGCAGGTTCAATTCCTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGTCCBSGGTTCGATYCCSVG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 34681 bayes= 10.1079 E= 3.7e-348 105 -96 33 -386 -86 -32 173 -254 -16 -1318 194 -1318 -33 -132 -413 110 -1318 202 -1318 -40 -33 157 -32 -286 -327 91 82 -16 -327 91 160 -286 -33 -313 185 -254 -1318 -1318 241 -1318 -327 -1318 -1318 163 -1318 -1318 -1318 168 -1318 241 -1318 -1318 -27 -1318 198 -1318 168 -1318 -1318 -1318 -69 4 -67 67 -327 130 -1318 70 -1318 241 -1318 -1318 -254 182 -313 -27 -1318 160 108 -327 -16 96 91 -1318 -286 -54 157 -21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGTCCBSGGTTCGATYCCSVG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 93 E= 3.7e-348 0.645161 0.096774 0.236559 0.021505 0.172043 0.150538 0.623656 0.053763 0.279570 0.000000 0.720430 0.000000 0.247312 0.075269 0.010753 0.666667 0.000000 0.763441 0.000000 0.236559 0.247312 0.559140 0.150538 0.043011 0.032258 0.354839 0.333333 0.279570 0.032258 0.354839 0.569892 0.043011 0.247312 0.021505 0.677419 0.053763 0.000000 0.000000 1.000000 0.000000 0.032258 0.000000 0.000000 0.967742 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.258065 0.000000 0.741935 0.000000 1.000000 0.000000 0.000000 0.000000 0.193548 0.193548 0.118280 0.494624 0.032258 0.462366 0.000000 0.505376 0.000000 1.000000 0.000000 0.000000 0.053763 0.666667 0.021505 0.258065 0.000000 0.569892 0.397849 0.032258 0.279570 0.365591 0.354839 0.000000 0.043011 0.129032 0.559140 0.268817 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGTCCBSGGTTCGATYCCSVG MEME-1 regular expression -------------------------------------------------------------------------------- [AG]G[GA][TA][CT][CA][CGT][GC][GA]GTTC[GA]AT[TC]C[CT][CG][CGA][GT] -------------------------------------------------------------------------------- Time 420.26 secs. ******************************************************************************** ******************************************************************************** MOTIF SBVNSSYBHTWMCCACTRVRCYAHVNVVSC MEME-2 width = 30 sites = 77 llr = 1193 E-value = 1.0e-183 ******************************************************************************** -------------------------------------------------------------------------------- Motif SBVNSSYBHTWMCCACTRVRCYAHVNVVSC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :134221:2255:29::534::a3422312 pos.-specific C 5322435332:3a7:7:14:a6:4233248 probability G 344235221:21:11::346::::33444: matrix T 22221:344631:::3a1:::4:3121111 bits 2.4 * * 2.2 * * 1.9 * * 1.7 * * * * Relative 1.4 * ** * * Entropy 1.2 * *** **** * (22.4 bits) 1.0 ***** **** * 0.7 ***** ***** ** 0.5 * ** * * ****** ****** ** 0.2 *** **** ********************* 0.0 ------------------------------ Multilevel CGGACGCTTTAACCACTAGGCCACAGGGCC consensus GCAGGCTCCATC T GCA T TGCCAG sequence TTC A G A ACAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SBVNSSYBHTWMCCACTRVRCYAHVNVVSC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXVI:856714-857163 - 14 5.31e-12 CCATGCTAAG GGAGCGCGCTACCGACTACGCCACACGCCC GAATCTTGTT chrXII:656819-657214 + 11 5.31e-12 CCATGCTAAG GGAGCGCGCTACCGACTACGCCACACGCCC AATTTTCTTG chrXI:219701-220140 - 25 5.31e-12 CCATGCTAAG GGAGCGCGCTACCGACTACGCCACACGCCC TATTTACTGT chrIV:1150719-1151168 + 19 3.59e-10 GAAATAGCAG GCATCGCCTTAACCACTCGGCCACTGGGAC TGAAACACTT chrXIII:258945-259446 + 65 4.89e-10 GATTTCTAAT CTTTCGCCTTAACCACTCGGCCAAGTTGCC ATACTA chrXII:167744-168264 + 43 4.89e-10 GATTTCTAAT CTTTCGCCTTAACCACTCGGCCAAGTTGCC ATATGACTAT chrIV:1305370-1305873 - 59 4.89e-10 GATTTCTAAT CTTTCGCCTTAACCACTCGGCCAAGTTGCC TTAATTTGTA chrIV:437547-438050 - 24 4.89e-10 GATTTCTAAT CTTTCGCCTTAACCACTCGGCCAAGTTGCC TTACTAATGA chrXII:734592-735018 - 48 5.69e-10 GTTATTAGCA CGGTGCCTTAACCAACTGGGCCAAGAGACC AAACTTTGTT chrIX:183289-183779 + 1 5.69e-10 . CGGTGCCTTAACCAACTGGGCCAAGAGACC AGGAATTTGT chrXV:353895-354318 + 28 1.37e-09 CATTACTAGT GTGGCGCCTTACCAACTTGGCCATAGAAGC AGTAAACCGT chrXIV:560543-560923 + 54 1.37e-09 CATTACTAGT GTGGCGCCTTACCAACTTGGCCATAGAAGC CCGTTATTAC chrIX:174567-175525 - 36 1.37e-09 CATTACTAGT GTGGCGCCTTACCAACTTGGCCATAGAAGC TCGTACTTGT chrXV:464275-464719 - 4 2.07e-09 GTCGCCCAAA GCGAGAATCATACCACTAGACCACACGCCC TTG chrXIV:546536-547676 - 39 2.07e-09 GTCGCCCAAA GCGAGAATCATACCACTAGACCACACGCCC GATTATTTCG chrXII:92259-92877 - 31 2.07e-09 GTCGCCCAAA GCGAGAATCATACCACTAGACCACACGCCC TTATTAACTT chrI:138966-139373 - 33 2.07e-09 GTCGCCCAAA GCGAGAATCATACCACTAGACCACACGCCC GTACTAATTG chrXIII:808026-808559 + 46 2.37e-09 GGATCAGAAC CGAAAGTGATAACCACTACACTATAGGACC TTTTTCTTCT chrV:249777-250760 - 68 2.37e-09 AAC CGAAAGTGATAACCACTACACTATAGGACC AGTACAACTG chrIV:802557-803033 + 29 2.37e-09 GGATCAAAAC CGAAAGTGATAACCACTACACTATAGGACC GACAATTCAT chrIV:520721-521189 - 68 2.37e-09 AAC CGAAAGTGATAACCACTACACTATAGGACC CTAAAATGGA chrIII:168096-168571 + 60 2.37e-09 GGATCAAAAC CGAAAGTGATAACCACTACACTATAGGACC AGGACTTCTT chrXII:592342-592820 + 60 3.54e-09 CACCTAAATC TGACGCCTTAAACCACTCGGCCAAACTCCC ATTGTATGTT chrX:617690-618163 - 43 3.54e-09 CACCTAAATC TGACGCCTTAAACCACTCGGCCAAACTCCC ATTGTTTGTT chrXII:962811-963303 + 20 5.20e-09 ATCTTAAGTC TGCCGCCTTAGACCACTCGGCCAACCCTCC GTCGATAATA chrXI:83970-84462 - 43 5.20e-09 ATCTTAAGTC TGCCGCCTTAGACCACTCGGCCAACCCTCC ATACAAATTT chrX:424229-424722 + 61 5.20e-09 ATCTTAAGTC TGCCGCCTTAGACCACTCGGCCAACCCTCC ATCTTATTTA chrVII:115314-115729 - 17 7.54e-09 GCTTAAAAGC CGAACGCTCTACCAACTGAGCTAACAAGGA TGAGTTCTTC chrXIV:374667-375142 - 15 9.61e-09 TTTCTTCAGT CTGGCGCTCTCCCAACTGAGCTAAGTCCGC TTATTTTTCT chrVII:779384-779932 - 9 9.61e-09 CCTTGGAAGG GTGGGATGATAACCACTACACTAACCGCCC GGGGTTAA chrXVI:581817-582361 - 24 1.08e-08 GATTAAGAGT CATACGCGCTACCGATTGCGCCAACAAGGC TCTTTTGTTG chrV:435551-436031 + 55 1.08e-08 GATTAAGAGT CATACGCGCTACCGATTGCGCCAACAAGGC TCTTATTGTT chrIV:1201515-1202073 - 7 1.08e-08 GATTAAGAGT CATACGCGCTACCGATTGCGCCAACAAGGC TATTTA chrVIII:358258-358797 + 63 1.22e-08 TTTCTTCAGT CTGGCGCTCTCCCAACTGAGCTAAATCCGC TTACTATT chrVIII:237672-238146 + 52 1.22e-08 TTTCTTCAGT CTGGCGCTCTCCCAACTGAGCTAAATCCGC TTACTATTTG chrX:233688-234209 - 41 1.37e-08 GGTTCGTAGC CAGACGCCGTGACCATTGGGCCACGAGGAA CAAGAATATA chrVII:1004014-1004436 - 42 1.37e-08 GCATTACAAG TGCAACGCTCTACCACTAAGCTAAGGAGGC AAACCCTTGA chrVII:661524-661995 - 40 1.37e-08 GCATTACAAG TGCAACGCTCTACCACTAAGCTAAGGAGGC AAATTTTTAC chrV:492193-492574 + 62 1.37e-08 GGTTCGTAGC CAGACGCCGTGACCATTGGGCCACGAGGAA TAGGATGTT chrII:350594-351142 - 10 1.72e-08 GGATCAAAAC CGAAAGTGATAACCACTACACTATAAAACC CTTTTATTG chrXV:226405-226909 + 46 2.15e-08 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TGAATTTCTT chrX:396585-397020 + 15 2.15e-08 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TTACTTTTGA chrXIII:747668-748168 + 67 2.41e-08 TGATTAGAAG TCAGACGCGTTGCCATTACGCCACGCGAGC TAGT chrXIII:131597-132111 + 64 2.41e-08 TGATTAGAAG TCAGACGCGTTGCCATTACGCCACGCGAGC TAAATTT chrXVI:775631-776045 + 20 3.33e-08 AGATTTGCAA TCTGCTGCGCTACCACTGCGCCATACGAGC TTTTGAATTA chrXVI:435666-436198 + 54 3.33e-08 AGATTTGCAA TCTGCTGCGCTACCACTGCGCCATACGAGC TTTTGTTGTA chrX:422691-423264 - 10 3.33e-08 GATTATGAGA CTGACGCTCTTCCTACTGAGCTACTGAAGC ATACAAAGG chrX:390805-391339 + 65 3.33e-08 GATTATGAGA CTGACGCTCTTCCTACTGAGCTACTGAAGC ACTATT chrII:642836-643262 + 51 3.33e-08 AGATTTGCAA TCTGCTGCGCTACCACTGCGCCATACGAGC TTTCTATTAC chrXVI:338604-339161 + 58 4.12e-08 GGGTTATGAG CCCTGCGCGCTTCCACTGCGCCACGGCGCT GCTAAATCAT chrX:517640-518098 + 37 4.12e-08 GGGTTATGAG CCCTGCGCGCTTCCACTGCGCCACGGCGCT TAACTTTTAT chrV:99902-100344 - 61 4.12e-08 GGGTTATGAG CCCTGCGCGCTTCCACTGCGCCACGGCGCT TAGCCAACTT chrIII:149717-150208 - 8 4.12e-08 GGGTTATGAG CCCTGCGCGCTTCCACTGCGCCACGGCGCT CAACATT chrXV:228084-228648 - 16 5.06e-08 ATTAACAGTC GCACGCCTTAACCAACTTGGCCATGGAGTC TAATATTTTA chrXI:74329-74879 - 71 5.06e-08 . GCACGCCTTAACCAACTTGGCCATGGAGTC TAATTGCTAT chrIII:127475-127916 - 71 5.06e-08 . GCACGCCTTAACCAACTTGGCCATGGAGTC ATTTTATCTT chrVII:205300-205815 - 14 6.20e-08 TTCTTGAATC AGGCGCCTTAGACCGCTCGGCCAAACAACC ACTTATTTGT chrXII:426891-427466 - 4 1.11e-07 ACGCGACAAG CGCCCATTCTGACCATTAAACTATCACGGA TAA chrX:540702-542358 - 29 1.11e-07 ACGCGACAAG CGCCCATTCTGACCATTAAACTATCACGGA TTTTCTTTCT chrX:374172-374833 + 14 1.11e-07 ACGCGACAAG CGCCCATTCTGACCATTAAACTATCACGGA AGAAACAAAG chrX:355178-355744 - 46 1.11e-07 ACGCGACAAG CGCCCATTCTGACCATTAAACTATCACGGA AGAAACAAAG chrVII:531270-531988 - 32 1.11e-07 ACGCGACAAG CGCCCATTCTGACCATTAAACTATCACGGA AGTAACTCGA chrIV:568653-569337 - 20 1.11e-07 ACGCGACAAG CGCCCATTCTGACCATTAAACTATCACGGA AGAAACAAAG chrXIV:631699-632145 + 17 1.76e-07 CGCACCCTAA GCGAGAATCATACCTCTAGACCACACGCCC GGTAGAAGTT chrXI:302692-303224 - 11 5.27e-07 TTAATTGGAG TCGAAAGCTCTACCATTGAGCCACCGCTTC ATCTTGGAAT chrVII:878555-879055 + 32 5.27e-07 TTAATTGGAG TCGAAAGCTCTACCATTGAGCCACCGCTTC ATCTTGAAAT chrVII:287159-287730 + 32 5.27e-07 TTAATTGGAG TCGAAAGCTCTACCATTGAGCCACCGCTTC ATCTTGAAAT chrIV:1256799-1257306 + 48 5.70e-07 GCTTGGGAAG CATGAATTCTAACCACTGAACCACTTTCGC TAAGAAGATC chrIV:1075263-1075760 + 54 8.35e-07 CCGTGTGAAG GCAACGTGATAGCCGCTACACTATTGGAAC AATATTACGG chrXV:663438-664247 + 64 1.12e-06 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC ACTATTT chrXI:307901-308467 + 55 1.12e-06 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC ACTTAATTGT chrIX:197365-197897 - 12 2.06e-06 CGGTGAGAAC GTGATGTGATAGCCGTTACACTACATCGGA TTTGATTAGC chrIV:1016951-1017526 + 61 2.06e-06 CGGTGAGAAC GTGATGTGATAGCCGTTACACTACATCGGA TTGTACCTTG chrV:487086-487627 + 67 3.01e-06 CGGTGAAAGC GTGATGTGATAGCCGTTACACTATATCGGA TTAA chrIII:82370-82667 + 36 3.01e-06 CGGTGAAAGC GTGATGTGATAGCCGTTACACTATATCGGA TAACAAATTA chrII:644936-645443 - 28 3.01e-06 CGGTGAAAGC GTGATGTGATAGCCGTTACACTATATCGGA TAATAACTCA chrX:354013-354482 - 47 5.36e-06 ATTACAGTCT TGCGCCTTAAACCAACTTGGCTACCGAGAG TGATAAATGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SBVNSSYBHTWMCCACTRVRCYAHVNVVSC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:856714-857163 5.3e-12 13_[-2]_57 chrXII:656819-657214 5.3e-12 10_[+2]_60 chrXI:219701-220140 5.3e-12 24_[-2]_46 chrIV:1150719-1151168 3.6e-10 18_[+2]_52 chrXIII:258945-259446 4.9e-10 64_[+2]_6 chrXII:167744-168264 4.9e-10 42_[+2]_28 chrIV:1305370-1305873 4.9e-10 58_[-2]_12 chrIV:437547-438050 4.9e-10 23_[-2]_47 chrXII:734592-735018 5.7e-10 47_[-2]_23 chrIX:183289-183779 5.7e-10 [+2]_70 chrXV:353895-354318 1.4e-09 27_[+2]_43 chrXIV:560543-560923 1.4e-09 53_[+2]_17 chrIX:174567-175525 1.4e-09 35_[-2]_35 chrXV:464275-464719 2.1e-09 3_[-2]_67 chrXIV:546536-547676 2.1e-09 38_[-2]_32 chrXII:92259-92877 2.1e-09 30_[-2]_40 chrI:138966-139373 2.1e-09 32_[-2]_38 chrXIII:808026-808559 2.4e-09 45_[+2]_25 chrV:249777-250760 2.4e-09 67_[-2]_3 chrIV:802557-803033 2.4e-09 28_[+2]_42 chrIV:520721-521189 2.4e-09 67_[-2]_3 chrIII:168096-168571 2.4e-09 59_[+2]_11 chrXII:592342-592820 3.5e-09 59_[+2]_11 chrX:617690-618163 3.5e-09 42_[-2]_28 chrXII:962811-963303 5.2e-09 19_[+2]_51 chrXI:83970-84462 5.2e-09 42_[-2]_28 chrX:424229-424722 5.2e-09 60_[+2]_10 chrVII:115314-115729 7.5e-09 16_[-2]_54 chrXIV:374667-375142 9.6e-09 14_[-2]_56 chrVII:779384-779932 9.6e-09 8_[-2]_62 chrXVI:581817-582361 1.1e-08 23_[-2]_47 chrV:435551-436031 1.1e-08 54_[+2]_16 chrIV:1201515-1202073 1.1e-08 6_[-2]_64 chrVIII:358258-358797 1.2e-08 62_[+2]_8 chrVIII:237672-238146 1.2e-08 51_[+2]_19 chrX:233688-234209 1.4e-08 40_[-2]_30 chrVII:1004014-1004436 1.4e-08 41_[-2]_29 chrVII:661524-661995 1.4e-08 39_[-2]_31 chrV:492193-492574 1.4e-08 61_[+2]_9 chrII:350594-351142 1.7e-08 9_[-2]_61 chrXV:226405-226909 2.2e-08 45_[+2]_25 chrX:396585-397020 2.2e-08 14_[+2]_56 chrXIII:747668-748168 2.4e-08 66_[+2]_4 chrXIII:131597-132111 2.4e-08 63_[+2]_7 chrXVI:775631-776045 3.3e-08 19_[+2]_51 chrXVI:435666-436198 3.3e-08 53_[+2]_17 chrX:422691-423264 3.3e-08 9_[-2]_61 chrX:390805-391339 3.3e-08 64_[+2]_6 chrII:642836-643262 3.3e-08 50_[+2]_20 chrXVI:338604-339161 4.1e-08 57_[+2]_13 chrX:517640-518098 4.1e-08 36_[+2]_34 chrV:99902-100344 4.1e-08 60_[-2]_10 chrIII:149717-150208 4.1e-08 7_[-2]_63 chrXV:228084-228648 5.1e-08 15_[-2]_55 chrXI:74329-74879 5.1e-08 70_[-2] chrIII:127475-127916 5.1e-08 70_[-2] chrVII:205300-205815 6.2e-08 13_[-2]_57 chrXII:426891-427466 1.1e-07 3_[-2]_67 chrX:540702-542358 1.1e-07 28_[-2]_42 chrX:374172-374833 1.1e-07 13_[+2]_57 chrX:355178-355744 1.1e-07 45_[-2]_25 chrVII:531270-531988 1.1e-07 31_[-2]_39 chrIV:568653-569337 1.1e-07 19_[-2]_51 chrXIV:631699-632145 1.8e-07 16_[+2]_54 chrXI:302692-303224 5.3e-07 10_[-2]_60 chrVII:878555-879055 5.3e-07 31_[+2]_39 chrVII:287159-287730 5.3e-07 31_[+2]_39 chrIV:1256799-1257306 5.7e-07 47_[+2]_23 chrIV:1075263-1075760 8.3e-07 53_[+2]_17 chrXV:663438-664247 1.1e-06 63_[+2]_7 chrXI:307901-308467 1.1e-06 54_[+2]_16 chrIX:197365-197897 2.1e-06 11_[-2]_59 chrIV:1016951-1017526 2.1e-06 60_[+2]_10 chrV:487086-487627 3e-06 66_[+2]_4 chrIII:82370-82667 3e-06 35_[+2]_35 chrII:644936-645443 3e-06 27_[-2]_43 chrX:354013-354482 5.4e-06 46_[-2]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SBVNSSYBHTWMCCACTRVRCYAHVNVVSC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SBVNSSYBHTWMCCACTRVRCYAHVNVVSC width=30 seqs=77 chrXVI:856714-857163 ( 14) GGAGCGCGCTACCGACTACGCCACACGCCC 1 chrXII:656819-657214 ( 11) GGAGCGCGCTACCGACTACGCCACACGCCC 1 chrXI:219701-220140 ( 25) GGAGCGCGCTACCGACTACGCCACACGCCC 1 chrIV:1150719-1151168 ( 19) GCATCGCCTTAACCACTCGGCCACTGGGAC 1 chrXIII:258945-259446 ( 65) CTTTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrXII:167744-168264 ( 43) CTTTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrIV:1305370-1305873 ( 59) CTTTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrIV:437547-438050 ( 24) CTTTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrXII:734592-735018 ( 48) CGGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrIX:183289-183779 ( 1) CGGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrXV:353895-354318 ( 28) GTGGCGCCTTACCAACTTGGCCATAGAAGC 1 chrXIV:560543-560923 ( 54) GTGGCGCCTTACCAACTTGGCCATAGAAGC 1 chrIX:174567-175525 ( 36) GTGGCGCCTTACCAACTTGGCCATAGAAGC 1 chrXV:464275-464719 ( 4) GCGAGAATCATACCACTAGACCACACGCCC 1 chrXIV:546536-547676 ( 39) GCGAGAATCATACCACTAGACCACACGCCC 1 chrXII:92259-92877 ( 31) GCGAGAATCATACCACTAGACCACACGCCC 1 chrI:138966-139373 ( 33) GCGAGAATCATACCACTAGACCACACGCCC 1 chrXIII:808026-808559 ( 46) CGAAAGTGATAACCACTACACTATAGGACC 1 chrV:249777-250760 ( 68) CGAAAGTGATAACCACTACACTATAGGACC 1 chrIV:802557-803033 ( 29) CGAAAGTGATAACCACTACACTATAGGACC 1 chrIV:520721-521189 ( 68) CGAAAGTGATAACCACTACACTATAGGACC 1 chrIII:168096-168571 ( 60) CGAAAGTGATAACCACTACACTATAGGACC 1 chrXII:592342-592820 ( 60) TGACGCCTTAAACCACTCGGCCAAACTCCC 1 chrX:617690-618163 ( 43) TGACGCCTTAAACCACTCGGCCAAACTCCC 1 chrXII:962811-963303 ( 20) TGCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrXI:83970-84462 ( 43) TGCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrX:424229-424722 ( 61) TGCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrVII:115314-115729 ( 17) CGAACGCTCTACCAACTGAGCTAACAAGGA 1 chrXIV:374667-375142 ( 15) CTGGCGCTCTCCCAACTGAGCTAAGTCCGC 1 chrVII:779384-779932 ( 9) GTGGGATGATAACCACTACACTAACCGCCC 1 chrXVI:581817-582361 ( 24) CATACGCGCTACCGATTGCGCCAACAAGGC 1 chrV:435551-436031 ( 55) CATACGCGCTACCGATTGCGCCAACAAGGC 1 chrIV:1201515-1202073 ( 7) CATACGCGCTACCGATTGCGCCAACAAGGC 1 chrVIII:358258-358797 ( 63) CTGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrVIII:237672-238146 ( 52) CTGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrX:233688-234209 ( 41) CAGACGCCGTGACCATTGGGCCACGAGGAA 1 chrVII:1004014-1004436 ( 42) TGCAACGCTCTACCACTAAGCTAAGGAGGC 1 chrVII:661524-661995 ( 40) TGCAACGCTCTACCACTAAGCTAAGGAGGC 1 chrV:492193-492574 ( 62) CAGACGCCGTGACCATTGGGCCACGAGGAA 1 chrII:350594-351142 ( 10) CGAAAGTGATAACCACTACACTATAAAACC 1 chrXV:226405-226909 ( 46) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrX:396585-397020 ( 15) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrXIII:747668-748168 ( 67) TCAGACGCGTTGCCATTACGCCACGCGAGC 1 chrXIII:131597-132111 ( 64) TCAGACGCGTTGCCATTACGCCACGCGAGC 1 chrXVI:775631-776045 ( 20) TCTGCTGCGCTACCACTGCGCCATACGAGC 1 chrXVI:435666-436198 ( 54) TCTGCTGCGCTACCACTGCGCCATACGAGC 1 chrX:422691-423264 ( 10) CTGACGCTCTTCCTACTGAGCTACTGAAGC 1 chrX:390805-391339 ( 65) CTGACGCTCTTCCTACTGAGCTACTGAAGC 1 chrII:642836-643262 ( 51) TCTGCTGCGCTACCACTGCGCCATACGAGC 1 chrXVI:338604-339161 ( 58) CCCTGCGCGCTTCCACTGCGCCACGGCGCT 1 chrX:517640-518098 ( 37) CCCTGCGCGCTTCCACTGCGCCACGGCGCT 1 chrV:99902-100344 ( 61) CCCTGCGCGCTTCCACTGCGCCACGGCGCT 1 chrIII:149717-150208 ( 8) CCCTGCGCGCTTCCACTGCGCCACGGCGCT 1 chrXV:228084-228648 ( 16) GCACGCCTTAACCAACTTGGCCATGGAGTC 1 chrXI:74329-74879 ( 71) GCACGCCTTAACCAACTTGGCCATGGAGTC 1 chrIII:127475-127916 ( 71) GCACGCCTTAACCAACTTGGCCATGGAGTC 1 chrVII:205300-205815 ( 14) AGGCGCCTTAGACCGCTCGGCCAAACAACC 1 chrXII:426891-427466 ( 4) CGCCCATTCTGACCATTAAACTATCACGGA 1 chrX:540702-542358 ( 29) CGCCCATTCTGACCATTAAACTATCACGGA 1 chrX:374172-374833 ( 14) CGCCCATTCTGACCATTAAACTATCACGGA 1 chrX:355178-355744 ( 46) CGCCCATTCTGACCATTAAACTATCACGGA 1 chrVII:531270-531988 ( 32) CGCCCATTCTGACCATTAAACTATCACGGA 1 chrIV:568653-569337 ( 20) CGCCCATTCTGACCATTAAACTATCACGGA 1 chrXIV:631699-632145 ( 17) GCGAGAATCATACCTCTAGACCACACGCCC 1 chrXI:302692-303224 ( 11) TCGAAAGCTCTACCATTGAGCCACCGCTTC 1 chrVII:878555-879055 ( 32) TCGAAAGCTCTACCATTGAGCCACCGCTTC 1 chrVII:287159-287730 ( 32) TCGAAAGCTCTACCATTGAGCCACCGCTTC 1 chrIV:1256799-1257306 ( 48) CATGAATTCTAACCACTGAACCACTTTCGC 1 chrIV:1075263-1075760 ( 54) GCAACGTGATAGCCGCTACACTATTGGAAC 1 chrXV:663438-664247 ( 64) AGATGCCATAACCGACTAGACCACGAAACC 1 chrXI:307901-308467 ( 55) AGATGCCATAACCGACTAGACCACGAAACC 1 chrIX:197365-197897 ( 12) GTGATGTGATAGCCGTTACACTACATCGGA 1 chrIV:1016951-1017526 ( 61) GTGATGTGATAGCCGTTACACTACATCGGA 1 chrV:487086-487627 ( 67) GTGATGTGATAGCCGTTACACTATATCGGA 1 chrIII:82370-82667 ( 36) GTGATGTGATAGCCGTTACACTATATCGGA 1 chrII:644936-645443 ( 28) GTGATGTGATAGCCGTTACACTATATCGGA 1 chrX:354013-354482 ( 47) TGCGCCTTAAACCAACTTGGCTACCGAGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SBVNSSYBHTWMCCACTRVRCYAHVNVVSC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 31169 bayes= 8.04217 E= 1.0e-183 -300 131 60 -59 -200 60 110 -42 -19 14 90 -88 32 5 23 -68 -78 119 79 -226 -59 60 131 -300 -178 127 -5 -19 -358 73 39 41 -78 73 -40 22 -34 -27 -1291 94 70 -227 -27 -6 81 67 -86 -258 -1291 241 -1291 -1291 -88 190 -86 -358 152 -1291 -105 -458 -1291 195 -1291 -19 -1291 -1291 -1291 168 54 -40 73 -178 -26 95 100 -1291 27 -1291 173 -1291 -1291 241 -1291 -1291 -1291 176 -1291 22 168 -1291 -1291 -1291 -13 105 -1291 6 32 31 60 -178 -50 46 79 -68 -34 73 90 -178 -13 23 114 -200 -226 119 119 -200 -78 200 -385 -258 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SBVNSSYBHTWMCCACTRVRCYAHVNVVSC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 77 E= 1.0e-183 0.038961 0.467532 0.285714 0.207792 0.077922 0.285714 0.402597 0.233766 0.272727 0.207792 0.350649 0.168831 0.389610 0.194805 0.220779 0.194805 0.181818 0.428571 0.324675 0.064935 0.207792 0.285714 0.467532 0.038961 0.090909 0.454545 0.181818 0.272727 0.025974 0.311688 0.246753 0.415584 0.181818 0.311688 0.142857 0.363636 0.246753 0.155844 0.000000 0.597403 0.506494 0.038961 0.155844 0.298701 0.545455 0.298701 0.103896 0.051948 0.000000 1.000000 0.000000 0.000000 0.168831 0.701299 0.103896 0.025974 0.896104 0.000000 0.090909 0.012987 0.000000 0.727273 0.000000 0.272727 0.000000 0.000000 0.000000 1.000000 0.454545 0.142857 0.311688 0.090909 0.259740 0.363636 0.376623 0.000000 0.376623 0.000000 0.623377 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.636364 0.000000 0.363636 1.000000 0.000000 0.000000 0.000000 0.285714 0.389610 0.000000 0.324675 0.389610 0.233766 0.285714 0.090909 0.220779 0.259740 0.324675 0.194805 0.246753 0.311688 0.350649 0.090909 0.285714 0.220779 0.415584 0.077922 0.064935 0.428571 0.428571 0.077922 0.181818 0.753247 0.012987 0.051948 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SBVNSSYBHTWMCCACTRVRCYAHVNVVSC MEME-2 regular expression -------------------------------------------------------------------------------- [CGT][GCT][GAC][AG][CG][GCA][CT][TCG][TC][TA][AT][AC]CCA[CT]T[AG][GCA][GA]C[CT]A[CTA][AGC][GCA][GCA][GAC][CG]C -------------------------------------------------------------------------------- Time 748.58 secs. ******************************************************************************** ******************************************************************************** MOTIF GRSSKTTGYCCGCGCDRGTTCGARYCYYGC MEME-3 width = 30 sites = 9 llr = 317 E-value = 8.2e-047 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRSSKTTGYCCGCGCDRGTTCGARYCYYGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :3:::::1:::::::43::::2a7:::::: pos.-specific C ::36:2::7a9:a:a:::::a:::3a73:9 probability G a7733::9:::a:a:37a:::8:3::::a: matrix T :::178a:3:1::::2::aa::::7:37:1 bits 2.4 * * **** * * * * 2.2 * * **** * * * * 1.9 * * ****** * * * ** 1.7 * ** ****** **** * * ** Relative 1.4 * * ** ****** ****** * ** Entropy 1.2 *** ********* ******* ** ** (50.7 bits) 1.0 *************** ************** 0.7 *************** ************** 0.5 ****************************** 0.2 ****************************** 0.0 ------------------------------ Multilevel GGGCTTTGCCCGCGCAGGTTCGAATCCTGC consensus ACGGC T GA A GC TC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRSSKTTGYCCGCGCDRGTTCGARYCYYGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXIII:258945-259446 - 21 1.80e-19 GAAATCTTTT GGGCTTTGCCCGCGCAGGTTCGAGTCCTGC AGTTGTCGTT chrIV:437547-438050 + 68 1.80e-19 GAAATCTTTT GGGCTTTGCCCGCGCAGGTTCGAGTCCTGC AGT chrII:226973-227365 + 1 1.80e-19 . GGGCTTTGCCCGCGCAGGTTCGAGTCCTGC AGTTGTCGTT chrXVI:689356-689875 + 44 4.29e-17 GAAATCTGTT GGGCTCTGCCCGCGCTGGTTCAAATCCTGC TGGTGTCGTA chrV:288138-288747 - 59 4.29e-17 GAAATCTGTT GGGCTCTGCCCGCGCTGGTTCAAATCCTGC TGGTGTCGTT chrX:424229-424722 - 15 6.40e-16 AGATCTGTTG GACGGTTGTCCGCGCGAGTTCGAACCTCGC ATCCTTCAGT chrIV:519651-519967 + 31 6.40e-16 AGATCTGTTG GACGGTTGTCCGCGCGAGTTCGAACCTCGC ATCCTTCAAT chrII:347393-347964 + 21 6.40e-16 AGATCTGTTG GACGGTTGTCCGCGCGAGTTCGAACCTCGC ATCCTTCAGT chrXV:274452-275009 + 56 5.07e-15 ATTAGGCATT GGGTTTTACCTGCGCAGGTTCGAATCCTGT CTGTGACGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRSSKTTGYCCGCGCDRGTTCGARYCYYGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:258945-259446 1.8e-19 20_[-3]_50 chrIV:437547-438050 1.8e-19 67_[+3]_3 chrII:226973-227365 1.8e-19 [+3]_70 chrXVI:689356-689875 4.3e-17 43_[+3]_27 chrV:288138-288747 4.3e-17 58_[-3]_12 chrX:424229-424722 6.4e-16 14_[-3]_56 chrIV:519651-519967 6.4e-16 30_[+3]_40 chrII:347393-347964 6.4e-16 20_[+3]_50 chrXV:274452-275009 5.1e-15 55_[+3]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRSSKTTGYCCGCGCDRGTTCGARYCYYGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRSSKTTGYCCGCGCDRGTTCGARYCYYGC width=30 seqs=9 chrXIII:258945-259446 ( 21) GGGCTTTGCCCGCGCAGGTTCGAGTCCTGC 1 chrIV:437547-438050 ( 68) GGGCTTTGCCCGCGCAGGTTCGAGTCCTGC 1 chrII:226973-227365 ( 1) GGGCTTTGCCCGCGCAGGTTCGAGTCCTGC 1 chrXVI:689356-689875 ( 44) GGGCTCTGCCCGCGCTGGTTCAAATCCTGC 1 chrV:288138-288747 ( 59) GGGCTCTGCCCGCGCTGGTTCAAATCCTGC 1 chrX:424229-424722 ( 15) GACGGTTGTCCGCGCGAGTTCGAACCTCGC 1 chrIV:519651-519967 ( 31) GACGGTTGTCCGCGCGAGTTCGAACCTCGC 1 chrII:347393-347964 ( 21) GACGGTTGTCCGCGCGAGTTCGAACCTCGC 1 chrXV:274452-275009 ( 56) GGGTTTTACCTGCGCAGGTTCGAATCCTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRSSKTTGYCCGCGCDRGTTCGARYCYYGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 31169 bayes= 13.1621 E= 8.2e-047 -982 -982 241 -982 10 -982 182 -982 -982 82 182 -982 -982 156 82 -149 -982 -982 82 110 -982 24 -982 132 -982 -982 -982 168 -149 -982 224 -982 -982 182 -982 10 -982 241 -982 -982 -982 224 -982 -149 -982 -982 241 -982 -982 241 -982 -982 -982 -982 241 -982 -982 241 -982 -982 51 -982 82 -49 10 -982 182 -982 -982 -982 241 -982 -982 -982 -982 168 -982 -982 -982 168 -982 241 -982 -982 -49 -982 205 -982 168 -982 -982 -982 110 -982 82 -982 -982 82 -982 110 -982 241 -982 -982 -982 182 -982 10 -982 82 -982 110 -982 -982 241 -982 -982 224 -982 -149 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRSSKTTGYCCGCGCDRGTTCGARYCYYGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 9 E= 8.2e-047 0.000000 0.000000 1.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.555556 0.333333 0.111111 0.000000 0.000000 0.333333 0.666667 0.000000 0.222222 0.000000 0.777778 0.000000 0.000000 0.000000 1.000000 0.111111 0.000000 0.888889 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 0.888889 0.000000 0.111111 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.444444 0.000000 0.333333 0.222222 0.333333 0.000000 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.222222 0.000000 0.777778 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.888889 0.000000 0.111111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRSSKTTGYCCGCGCDRGTTCGARYCYYGC MEME-3 regular expression -------------------------------------------------------------------------------- G[GA][GC][CG][TG][TC]TG[CT]CCGCGC[AGT][GA]GTTC[GA]A[AG][TC]C[CT][TC]GC -------------------------------------------------------------------------------- Time 968.73 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:81905-82334 8.59e-02 100 chrI:138966-139373 2.23e-06 32_[-2(2.07e-09)]_38 chrI:142153-143715 5.08e-01 100 chrI:166170-166611 9.53e-01 100 chrI:181123-181504 5.79e-01 100 chrI:182232-183193 2.54e-02 100 chrII:9445-9986 8.06e-01 100 chrII:36232-36808 1.20e-01 100 chrII:44642-45390 4.75e-02 100 chrII:59833-61798 9.00e-01 100 chrII:87894-88575 2.63e-01 100 chrII:88938-90398 8.16e-02 100 chrII:165060-165446 2.70e-01 100 chrII:167753-169654 5.86e-01 100 chrII:181321-181689 9.91e-01 100 chrII:197248-197859 1.35e-06 34_[+1(3.94e-10)]_44 chrII:226973-227365 1.91e-16 [+3(1.80e-19)]_70 chrII:266180-266708 8.78e-05 27_[+1(1.99e-08)]_51 chrII:326450-327111 2.82e-08 69_[-1(3.44e-10)]_9 chrII:332297-333092 1.86e-01 100 chrII:347393-347964 2.37e-13 20_[+3(6.40e-16)]_50 chrII:350594-351142 1.66e-11 9_[-2(1.72e-08)]_12_[+1(1.23e-09)]_\ 27 chrII:405667-406361 5.36e-06 38_[+1(5.20e-09)]_40 chrII:415493-416064 7.78e-01 100 chrII:476809-477775 9.46e-01 100 chrII:478952-479467 5.55e-01 100 chrII:592272-593403 9.57e-01 100 chrII:604052-607136 6.20e-01 100 chrII:642836-643262 4.78e-09 16_[-1(7.92e-08)]_12_[+2(3.33e-08)]_\ 20 chrII:644936-645443 8.49e-10 27_[-2(3.01e-06)]_12_[+1(6.88e-11)]_\ 9 chrII:680357-682451 4.27e-01 100 chrIII:73-623 1.71e-01 100 chrIII:30540-30906 9.64e-01 100 chrIII:82370-82667 8.49e-10 1_[-1(6.88e-11)]_12_[+2(3.01e-06)]_\ 35 chrIII:90848-91140 7.96e-01 100 chrIII:123326-123827 2.05e-10 58_[-1(5.14e-13)]_20 chrIII:127475-127916 4.46e-04 70_[-2(5.06e-08)] chrIII:141995-142976 3.70e-01 100 chrIII:149717-150208 1.55e-08 7_[-2(4.12e-08)]_12_[+1(2.23e-07)]_\ 29 chrIII:162065-163901 9.73e-01 100 chrIII:168096-168571 2.58e-12 25_[-1(1.23e-09)]_12_[+2(2.37e-09)]_\ 11 chrIII:177075-178805 8.64e-01 100 chrIII:227759-228543 1.64e-01 100 chrIII:295292-295913 1.53e-01 100 chrIII:308675-309497 9.53e-01 100 chrIII:315595-316047 9.72e-01 100 chrIV:83342-83975 8.94e-01 100 chrIV:117137-118226 7.19e-01 100 chrIV:129695-131017 9.86e-01 100 chrIV:216539-218074 1.46e-01 100 chrIV:221317-222366 1.32e-01 100 chrIV:229445-230749 6.83e-01 100 chrIV:305475-310221 8.68e-01 100 chrIV:321618-321975 9.32e-01 100 chrIV:340146-341833 7.93e-01 100 chrIV:358027-358493 9.90e-01 100 chrIV:359164-359835 1.09e-01 100 chrIV:410148-410778 4.48e-06 9_[+1(4.68e-09)]_69 chrIV:411229-411665 1.14e-01 100 chrIV:433960-434916 9.49e-01 100 chrIV:437547-438050 3.40e-23 23_[-2(4.89e-10)]_14_[+3(1.80e-19)]_\ 3 chrIV:465278-465615 9.67e-01 100 chrIV:488442-489155 2.24e-08 56_[-1(3.44e-10)]_22 chrIV:490940-492704 4.42e-01 100 chrIV:519651-519967 2.37e-13 30_[+3(6.40e-16)]_40 chrIV:520721-521189 1.86e-06 67_[-2(2.37e-09)]_3 chrIV:568653-569337 3.65e-10 19_[-2(1.11e-07)]_12_[+1(5.20e-09)]_\ 17 chrIV:579022-580713 6.50e-02 100 chrIV:619697-620200 7.03e-05 78_[-1(2.09e-07)] chrIV:644777-645387 9.43e-01 100 chrIV:667725-668280 2.81e-06 62_[-1(3.94e-10)]_16 chrIV:802557-803033 5.18e-07 28_[+2(2.37e-09)]_42 chrIV:835745-836304 4.19e-01 100 chrIV:884246-884653 1.75e-07 64_[+1(2.58e-08)]_14 chrIV:946121-946675 4.16e-04 23_[+1(1.40e-07)]_55 chrIV:980724-981163 9.08e-01 100 chrIV:992721-993246 5.71e-01 100 chrIV:1016951-1017526 7.75e-11 26_[-1(6.88e-11)]_12_[+2(2.06e-06)]_\ 10 chrIV:1075263-1075760 1.62e-12 18_[-1(1.05e-11)]_13_[+2(8.35e-07)]_\ 17 chrIV:1095123-1095660 1.20e-05 36_[-1(3.41e-09)]_42 chrIV:1150719-1151168 4.24e-06 18_[+2(3.59e-10)]_52 chrIV:1175742-1176116 8.91e-01 100 chrIV:1201515-1202073 1.85e-11 6_[-2(1.08e-08)]_13_[+1(2.99e-10)]_\ 29 chrIV:1236390-1238528 7.18e-01 100 chrIV:1256799-1257306 1.59e-10 13_[-1(1.27e-10)]_12_[+2(5.70e-07)]_\ 23 chrIV:1300605-1301345 2.13e-01 100 chrIV:1305370-1305873 4.70e-06 58_[-2(4.89e-10)]_12 chrIV:1352052-1353080 4.90e-01 100 chrIV:1354602-1356088 9.04e-01 100 chrIV:1359417-1361120 5.50e-01 100 chrIV:1401182-1403337 8.33e-02 100 chrIV:1449809-1451364 4.80e-01 100 chrIX:68170-69579 9.29e-01 100 chrIX:98190-100050 9.62e-01 100 chrIX:174567-175525 1.60e-11 35_[-2(1.37e-09)]_13_[+1(1.99e-08)] chrIX:183289-183779 8.68e-06 [+2(5.69e-10)]_70 chrIX:197365-197897 8.22e-11 11_[-2(2.06e-06)]_12_[+1(6.88e-11)]_\ 25 chrIX:210656-211079 8.14e-01 100 chrIX:248621-249000 9.01e-01 100 chrIX:254202-254580 3.31e-01 100 chrIX:257365-257945 4.63e-01 100 chrIX:299984-300491 6.81e-07 48_[-1(2.99e-10)]_30 chrIX:315804-318478 8.88e-01 100 chrIX:322580-324393 3.28e-01 100 chrIX:325734-326313 8.55e-01 100 chrIX:370216-370767 1.36e-07 17_[+1(6.88e-11)]_61 chrV:53484-54036 5.05e-01 100 chrV:61030-62166 3.36e-01 100 chrV:67132-69311 3.64e-01 100 chrV:85093-86993 6.99e-01 100 chrV:99902-100344 2.51e-04 60_[-2(4.12e-08)]_10 chrV:117408-118320 3.82e-01 100 chrV:130836-131369 1.23e-07 37_[-1(1.23e-09)]_41 chrV:135171-136039 2.69e-01 100 chrV:138440-140002 7.52e-01 100 chrV:140161-140905 8.22e-01 100 chrV:176899-177468 8.75e-08 7_[+1(6.88e-11)]_71 chrV:207350-208194 9.76e-01 100 chrV:249777-250760 3.57e-05 67_[-2(2.37e-09)]_3 chrV:270073-270664 4.49e-03 47_[-2(2.98e-05)]_23 chrV:288138-288747 4.24e-14 58_[-3(4.29e-17)]_12 chrV:305767-307409 4.26e-01 100 chrV:311709-312303 1.99e-06 75_[-1(1.70e-10)]_3 chrV:354692-355378 9.10e-01 100 chrV:362148-363299 5.76e-01 100 chrV:396132-398191 1.20e-01 100 chrV:423076-425523 7.37e-01 100 chrV:431017-431940 9.90e-01 100 chrV:434377-435149 6.55e-02 100 chrV:435551-436031 1.27e-11 19_[-1(2.99e-10)]_13_[+2(1.08e-08)]_\ 16 chrV:438527-438985 1.47e-06 38_[+1(3.94e-10)]_40 chrV:441782-442754 6.18e-01 100 chrV:442975-443363 2.93e-01 100 chrV:469237-470190 1.14e-01 100 chrV:487086-487627 2.53e-10 32_[-1(6.88e-11)]_12_[+2(3.01e-06)]_\ 4 chrV:492193-492574 1.92e-09 26_[-1(2.09e-07)]_13_[+2(1.37e-08)]_\ 9 chrV:551015-551569 2.09e-06 51_[-1(3.94e-10)]_27 chrVI:63968-65403 9.25e-01 100 chrVI:95469-95906 1.79e-01 100 chrVI:101009-101696 9.75e-01 100 chrVI:136816-137709 7.52e-01 100 chrVI:157843-158249 6.86e-01 100 chrVI:162008-162403 6.65e-01 100 chrVI:167193-167710 6.68e-03 35_[-2(5.36e-06)]_35 chrVI:180673-181278 1.16e-08 56_[-1(3.05e-11)]_22 chrVI:191003-191784 8.11e-01 100 chrVI:210423-211110 8.06e-01 100 chrVI:220064-222104 1.79e-01 100 chrVI:222719-225140 3.85e-02 100 chrVI:226487-226919 1.84e-06 43_[-1(2.99e-10)]_35 chrVII:20242-20973 9.62e-01 100 chrVII:110361-110789 8.87e-01 100 chrVII:115314-115729 2.59e-05 16_[-2(7.54e-09)]_54 chrVII:122051-123008 9.99e-01 100 chrVII:148048-149567 8.84e-01 100 chrVII:185407-185920 9.72e-01 100 chrVII:205300-205815 7.29e-05 13_[-2(6.20e-08)]_57 chrVII:254119-254746 4.67e-01 100 chrVII:255192-255593 8.07e-01 100 chrVII:276999-278725 3.74e-01 100 chrVII:287159-287730 7.05e-04 31_[+2(5.27e-07)]_39 chrVII:310381-312248 9.97e-01 100 chrVII:319247-320163 9.52e-01 100 chrVII:328369-329013 2.58e-01 100 chrVII:364903-366751 5.50e-02 9_[-3(1.88e-05)]_61 chrVII:371199-371581 2.93e-01 100 chrVII:401401-401622 1.15e-07 73_[-1(6.88e-11)]_5 chrVII:405458-405931 7.60e-01 100 chrVII:411970-412592 4.41e-07 71_[-1(3.94e-10)]_7 chrVII:422873-423553 1.24e-02 5_[+3(3.63e-05)]_65 chrVII:437249-439905 7.10e-02 100 chrVII:440236-442846 2.22e-01 100 chrVII:531270-531988 3.65e-10 31_[-2(1.11e-07)]_12_[+1(5.20e-09)]_\ 5 chrVII:533829-535203 9.40e-01 100 chrVII:541707-542262 9.62e-01 100 chrVII:544090-544892 1.82e-01 100 chrVII:555085-555866 5.16e-01 100 chrVII:560742-561742 6.10e-01 100 chrVII:609301-610025 9.73e-01 100 chrVII:648009-648486 8.92e-01 100 chrVII:648772-649372 3.32e-01 100 chrVII:661524-661995 6.82e-05 39_[-2(1.37e-08)]_31 chrVII:700407-701265 9.67e-01 100 chrVII:706717-707188 7.91e-01 100 chrVII:726372-728162 9.99e-01 100 chrVII:730949-731460 1.08e-04 26_[+1(5.00e-08)]_52 chrVII:735978-736645 4.58e-01 100 chrVII:738892-739587 8.84e-01 100 chrVII:774092-774748 3.79e-06 22_[+1(4.68e-09)]_56 chrVII:779384-779932 9.24e-12 8_[-2(9.61e-09)]_12_[+1(8.50e-10)]_\ 28 chrVII:787063-788765 9.47e-01 100 chrVII:794063-794594 1.88e-01 100 chrVII:823338-823731 1.57e-06 41_[+1(3.94e-10)]_37 chrVII:828396-829000 8.89e-01 100 chrVII:845377-846028 9.09e-08 37_[+1(3.05e-11)]_41 chrVII:856732-856945 2.27e-03 45_[+3(3.29e-05)]_25 chrVII:857207-857670 8.93e-01 100 chrVII:876170-878157 6.24e-01 100 chrVII:878555-879055 7.05e-04 31_[+2(5.27e-07)]_39 chrVII:882425-883931 2.00e-01 100 chrVII:919995-920208 9.95e-01 100 chrVII:930712-931638 1.00e+00 100 chrVII:1004014-1004436 6.82e-05 41_[-2(1.37e-08)]_29 chrVIII:34435-36320 1.52e-03 44_[+2(1.78e-05)]_26 chrVIII:62548-62933 1.88e-01 64_[-2(9.61e-05)]_6 chrVIII:74892-76293 1.50e-01 100 chrVIII:85069-85369 6.89e-01 100 chrVIII:103768-105401 9.01e-01 100 chrVIII:115838-116403 1.58e-04 44_[-1(1.99e-08)]_34 chrVIII:125897-126326 2.67e-01 100 chrVIII:132799-133109 9.98e-01 100 chrVIII:134086-134676 2.23e-06 32_[+1(1.23e-09)]_46 chrVIII:145849-146574 9.20e-01 100 chrVIII:147588-149436 1.30e-01 100 chrVIII:173679-175949 7.56e-01 100 chrVIII:237672-238146 3.07e-05 51_[+2(1.22e-08)]_19 chrVIII:296759-297237 8.09e-01 100 chrVIII:358258-358797 8.73e-11 8_[-1(3.41e-09)]_32_[+2(1.22e-08)]_\ 8 chrVIII:382686-383367 8.27e-02 100 chrVIII:388642-389007 2.51e-01 100 chrVIII:466807-467282 4.62e-06 37_[+1(9.18e-08)]_41 chrVIII:475357-475917 9.53e-01 100 chrVIII:504838-506228 8.94e-01 100 chrVIII:555791-556611 7.35e-01 100 chrX:58959-59448 5.17e-01 100 chrX:73369-76862 4.21e-01 100 chrX:89853-90460 9.13e-01 100 chrX:115662-116246 6.74e-08 43_[-1(6.88e-11)]_35 chrX:138918-140423 5.40e-01 100 chrX:156214-157898 9.51e-01 100 chrX:196793-197451 6.95e-01 100 chrX:204538-205042 5.75e-06 37_[+1(5.20e-09)]_41 chrX:227739-228659 4.39e-01 100 chrX:233688-234209 3.64e-05 40_[-2(1.37e-08)]_30 chrX:332271-334066 1.64e-01 100 chrX:354013-354482 1.51e-02 46_[-2(5.36e-06)]_24 chrX:355178-355744 5.45e-10 5_[+1(3.80e-09)]_18_[-2(1.11e-07)]_\ 25 chrX:374172-374833 5.45e-10 13_[+2(1.11e-07)]_18_[-1(3.80e-09)]_\ 17 chrX:378216-378608 1.47e-06 42_[+1(3.94e-10)]_36 chrX:390805-391339 4.44e-10 29_[-1(2.37e-08)]_13_[+2(3.33e-08)]_\ 6 chrX:391825-392145 3.52e-01 100 chrX:396585-397020 1.40e-04 14_[+2(2.15e-08)]_56 chrX:414788-415277 9.05e-07 26_[+1(2.99e-10)]_52 chrX:415716-416247 4.66e-04 7_[-1(3.23e-07)]_71 chrX:422691-423264 4.44e-10 9_[-2(3.33e-08)]_13_[+1(2.37e-08)]_\ 26 chrX:424229-424722 4.51e-19 14_[-3(6.40e-16)]_16_[+2(5.20e-09)]_\ 10 chrX:517640-518098 1.55e-08 2_[-1(2.23e-07)]_12_[+2(4.12e-08)]_\ 34 chrX:523536-524440 9.59e-01 100 chrX:531527-532278 1.84e-07 16_[+1(3.05e-11)]_62 chrX:538000-538883 2.33e-01 100 chrX:540702-542358 3.65e-10 28_[-2(1.11e-07)]_12_[+1(5.20e-09)]_\ 8 chrX:542772-543360 9.95e-01 100 chrX:607889-609108 4.25e-01 100 chrX:617690-618163 2.89e-07 42_[-2(3.54e-09)]_28 chrX:651081-651633 8.30e-01 100 chrX:651910-652981 7.12e-01 100 chrX:663641-664376 4.17e-01 100 chrX:702975-703661 6.62e-01 100 chrX:745061-745748 2.32e-01 100 chrXI:779-1083 6.97e-01 100 chrXI:46710-47010 5.20e-01 100 chrXI:67799-68041 8.37e-02 100 chrXI:74329-74879 3.60e-04 70_[-2(5.06e-08)] chrXI:83970-84462 1.98e-06 42_[-2(5.20e-09)]_28 chrXI:107406-110155 3.80e-01 100 chrXI:118344-119033 7.41e-01 100 chrXI:140767-141492 9.97e-01 100 chrXI:157912-159648 8.30e-01 100 chrXI:162251-162763 2.68e-05 38_[-1(3.80e-09)]_40 chrXI:219701-220140 4.24e-14 24_[-2(5.31e-12)]_13_[+1(4.68e-09)]_\ 11 chrXI:302692-303224 6.02e-04 10_[-2(5.27e-07)]_60 chrXI:307901-308467 1.29e-09 18_[-1(3.94e-10)]_14_[+2(1.12e-06)]_\ 16 chrXI:313203-314017 9.09e-01 100 chrXI:333996-334901 9.10e-01 100 chrXI:382184-382464 3.54e-02 100 chrXI:430674-432464 5.79e-01 100 chrXI:457989-458959 8.62e-01 100 chrXI:490741-491460 7.85e-01 100 chrXI:513057-513605 5.75e-06 59_[-1(5.20e-09)]_19 chrXI:517397-518172 7.02e-01 100 chrXI:578748-579381 1.90e-06 16_[+1(1.55e-09)]_62 chrXI:617671-619280 9.76e-01 100 chrXII:47570-49239 2.80e-01 100 chrXII:92259-92877 2.23e-06 30_[-2(2.07e-09)]_40 chrXII:167744-168264 2.94e-07 42_[+2(4.89e-10)]_28 chrXII:198315-199722 4.31e-01 100 chrXII:201664-203020 4.84e-01 100 chrXII:214635-215070 7.88e-01 100 chrXII:231961-234262 3.12e-01 100 chrXII:241626-243447 9.95e-01 100 chrXII:261185-264277 7.98e-01 100 chrXII:282579-283951 5.10e-02 100 chrXII:348092-348780 9.05e-01 100 chrXII:366034-366575 5.46e-02 100 chrXII:369637-370308 3.91e-01 100 chrXII:370571-370928 6.84e-02 100 chrXII:374199-374695 1.76e-04 1_[+1(2.09e-07)]_77 chrXII:400692-405588 4.22e-01 100 chrXII:424133-424492 5.16e-01 100 chrXII:426891-427466 3.65e-10 3_[-2(1.11e-07)]_12_[+1(5.20e-09)]_\ 33 chrXII:448499-449051 8.94e-01 100 chrXII:459600-460737 3.31e-01 100 chrXII:498344-500130 1.53e-01 100 chrXII:522121-523314 1.35e-01 100 chrXII:592342-592820 2.89e-07 59_[+2(3.54e-09)]_11 chrXII:605132-605617 1.54e-01 100 chrXII:628132-628786 1.10e-02 51_[+3(3.63e-05)]_19 chrXII:656819-657214 6.21e-08 10_[+2(5.31e-12)]_60 chrXII:673495-674540 1.53e-01 100 chrXII:713137-713620 8.68e-01 100 chrXII:731474-732387 9.59e-01 100 chrXII:734592-735018 5.94e-08 47_[-2(5.69e-10)]_23 chrXII:780484-781883 9.39e-01 100 chrXII:783923-784521 4.91e-01 100 chrXII:793769-797616 3.07e-01 100 chrXII:818502-819694 9.48e-01 100 chrXII:875057-877325 1.71e-01 100 chrXII:897655-899711 7.67e-01 100 chrXII:920998-923751 4.68e-01 100 chrXII:932070-932534 6.46e-01 100 chrXII:962811-963303 1.05e-06 19_[+2(5.20e-09)]_51 chrXII:975744-976213 1.05e-04 62_[-1(5.00e-08)]_16 chrXII:1012139-1012798 5.39e-02 100 chrXII:1017687-1019409 3.82e-01 100 chrXII:1028181-1028625 8.60e-01 100 chrXII:1051825-1052227 7.36e-01 100 chrXIII:91437-92110 4.25e-03 100 chrXIII:131597-132111 1.31e-10 29_[-1(3.80e-09)]_12_[+2(2.41e-08)]_\ 7 chrXIII:145885-147226 2.54e-01 100 chrXIII:168229-169052 9.73e-01 100 chrXIII:195921-196315 5.86e-07 8_[-1(2.27e-10)]_70 chrXIII:225142-226647 6.59e-01 100 chrXIII:258945-259446 3.40e-23 20_[-3(1.80e-19)]_14_[+2(4.89e-10)]_\ 6 chrXIII:290564-291386 9.97e-01 100 chrXIII:296730-298922 1.17e-01 100 chrXIII:320918-321327 4.92e-02 78_[+1(6.11e-05)] chrXIII:352064-353202 9.38e-04 30_[+1(5.19e-05)]_48 chrXIII:362932-363439 6.70e-01 100 chrXIII:372179-372668 1.42e-01 100 chrXIII:379007-379656 5.97e-04 29_[-1(3.23e-07)]_49 chrXIII:420320-420874 9.06e-07 49_[-1(3.94e-10)]_29 chrXIII:463330-463904 5.62e-06 29_[+1(5.20e-09)]_49 chrXIII:480378-480837 1.51e-06 71_[-1(2.99e-10)]_7 chrXIII:504904-505239 4.04e-01 100 chrXIII:549881-553312 9.55e-01 100 chrXIII:572581-573166 1.38e-05 67_[-1(2.37e-08)]_11 chrXIII:586354-586912 1.57e-06 61_[-1(3.94e-10)]_17 chrXIII:731980-733573 6.02e-01 100 chrXIII:747668-748168 3.66e-10 32_[-1(3.80e-09)]_12_[+2(2.41e-08)]_\ 4 chrXIII:753002-755143 6.77e-01 100 chrXIII:808026-808559 1.90e-11 11_[-1(5.76e-09)]_12_[+2(2.37e-09)]_\ 25 chrXIII:837728-838273 2.79e-04 36_[+1(1.40e-07)]_42 chrXIII:861182-861414 1.44e-01 100 chrXIV:61512-64460 2.36e-01 100 chrXIV:88921-89741 8.31e-01 100 chrXIV:96000-96477 6.34e-07 60_[-1(8.50e-10)]_18 chrXIV:102570-103218 7.07e-01 100 chrXIV:104583-105663 9.99e-01 100 chrXIV:169385-169978 3.92e-01 100 chrXIV:229619-231019 2.00e-01 100 chrXIV:241385-241763 9.60e-02 100 chrXIV:330774-331663 4.86e-03 43_[-3(3.34e-05)]_27 chrXIV:374667-375142 7.16e-11 14_[-2(9.61e-09)]_31_[+1(3.41e-09)]_\ 3 chrXIV:442788-444809 1.65e-01 100 chrXIV:493700-495701 3.13e-01 100 chrXIV:499304-500756 2.38e-01 100 chrXIV:518738-519144 5.43e-02 100 chrXIV:546536-547676 2.23e-06 38_[-2(2.07e-09)]_32 chrXIV:560543-560923 4.11e-11 18_[-1(1.99e-08)]_13_[+2(1.37e-09)]_\ 17 chrXIV:568053-568564 9.87e-01 100 chrXIV:569624-570088 1.84e-06 69_[-1(3.94e-10)]_9 chrXIV:631699-632145 1.05e-04 16_[+2(1.76e-07)]_54 chrXIV:632406-632930 2.25e-05 25_[+1(5.00e-08)]_53 chrXIV:715960-716629 4.47e-01 100 chrXIV:725926-726595 9.95e-01 100 chrXV:28422-30887 2.11e-02 35_[-3(6.65e-05)]_35 chrXV:79712-80161 8.80e-01 100 chrXV:92720-94807 9.48e-01 100 chrXV:110850-111281 8.38e-01 100 chrXV:113501-114961 1.08e-01 100 chrXV:159209-160145 1.20e-01 100 chrXV:161097-161810 9.54e-02 100 chrXV:216279-216711 9.66e-02 100 chrXV:226405-226909 2.52e-12 12_[-1(3.05e-11)]_11_[+2(2.15e-08)]_\ 25 chrXV:228084-228648 4.17e-09 15_[-2(5.06e-08)]_14_[+1(5.00e-08)]_\ 19 chrXV:252839-254695 7.00e-01 100 chrXV:274452-275009 1.56e-13 55_[+3(5.07e-15)]_15 chrXV:281955-282623 9.77e-01 100 chrXV:287300-288438 3.55e-01 100 chrXV:300885-301725 9.13e-01 100 chrXV:340113-340744 9.84e-01 100 chrXV:353895-354318 1.27e-05 27_[+2(1.37e-09)]_43 chrXV:407604-408233 9.26e-01 100 chrXV:438440-439030 1.40e-06 24_[+1(1.55e-09)]_54 chrXV:464275-464719 8.54e-13 3_[-2(2.07e-09)]_42_[+1(2.27e-10)]_\ 3 chrXV:487430-487767 8.31e-01 100 chrXV:504982-505504 6.83e-01 100 chrXV:571708-572160 8.23e-01 100 chrXV:594309-594679 9.53e-01 100 chrXV:663438-664247 1.37e-09 27_[-1(3.94e-10)]_14_[+2(1.12e-06)]_\ 7 chrXV:678041-679171 9.90e-01 100 chrXV:710118-710489 9.68e-01 100 chrXV:779659-780996 8.33e-01 100 chrXV:832230-832847 1.34e-01 5_[+3(9.42e-05)]_65 chrXV:866525-868109 9.90e-01 100 chrXV:901445-901673 7.25e-01 100 chrXV:968129-968423 1.05e-01 100 chrXV:976376-976706 8.32e-01 100 chrXV:978802-979160 5.06e-01 100 chrXV:979739-981305 9.98e-01 100 chrXV:1027826-1029548 9.57e-02 100 chrXVI:55848-56434 2.84e-01 100 chrXVI:75150-76864 4.10e-01 100 chrXVI:188596-188933 1.50e-01 100 chrXVI:209699-210498 8.64e-01 100 chrXVI:280536-283275 1.13e-02 68_[+3(5.13e-05)]_2 chrXVI:302633-304350 7.53e-01 100 chrXVI:338604-339161 1.55e-08 23_[-1(2.23e-07)]_12_[+2(4.12e-08)]_\ 13 chrXVI:378635-379011 3.18e-01 100 chrXVI:404535-407782 9.99e-01 100 chrXVI:435666-436198 4.78e-09 19_[-1(7.92e-08)]_12_[+2(3.33e-08)]_\ 17 chrXVI:519282-520545 5.84e-01 100 chrXVI:559906-560516 2.86e-05 45_[-1(3.41e-09)]_33 chrXVI:572174-572609 7.63e-01 100 chrXVI:581817-582361 1.27e-11 23_[-2(1.08e-08)]_13_[+1(2.99e-10)]_\ 12 chrXVI:622279-622866 2.95e-05 25_[-1(3.41e-09)]_53 chrXVI:689356-689875 2.17e-15 43_[+3(4.29e-17)]_27 chrXVI:699845-700681 3.03e-01 100 chrXVI:731636-732310 2.79e-01 100 chrXVI:744073-744623 5.77e-05 28_[+1(2.09e-07)]_50 chrXVI:768407-769503 6.66e-01 100 chrXVI:775631-776045 1.08e-04 19_[+2(3.33e-08)]_51 chrXVI:794459-796095 5.09e-01 100 chrXVI:810573-811839 8.18e-01 100 chrXVI:819311-820274 8.30e-02 100 chrXVI:821644-822199 9.93e-01 100 chrXVI:856714-857163 4.24e-14 13_[-2(5.31e-12)]_13_[+1(4.68e-09)]_\ 22 chrXVI:860155-860717 4.80e-08 34_[+1(3.05e-11)]_44 chrXVI:879749-880576 3.08e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************