# DREME 4.12.0
#     command: dreme -v 1 -oc intersect_memeout/dreme_out -png -dna -p intersect_memeout/seqs-centered -n intersect_memeout/seqs-shuffled
#   positives: 439 from intersect_memeout/seqs-centered (Sat Nov 23 19:05:50 PST 2019)
#   negatives: 439 from intersect_memeout/seqs-shuffled (Sat Nov 23 19:05:50 PST 2019)
#        host: kali.stanford.edu
#        when: Sat Nov 23 19:22:07 PST 2019

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.300 C 0.199 G 0.199 T 0.302


MOTIF RGTTCRA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     RGTTCRA    TYGAACY        131         20   3.7e-025   1.0e-020
#          GGTTCGA    TCGAACC         67          3   4.0e-018   1.1e-013
#          AGTTCGA    TCGAACT         27          4   1.3e-005   3.5e-001
#          GGTTCAA    TTGAACC         30          8   1.8e-004   5.0e+000
#          AGTTCAA    TTGAACT         17          5   7.8e-003   2.2e+002

letter-probability matrix: alength= 4 w= 7 nsites= 133 E= 1.0e-020
0.293233 0.000000 0.706767 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.360902 0.000000 0.639098 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGTGGTW DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     AGTGGTW    WACCACT         53          2   9.1e-015   2.5e-010
#          AGTGGTT    AACCACT         30          1   9.2e-009   2.6e-004
#          AGTGGTA    TACCACT         28          1   3.7e-008   1.0e-003

letter-probability matrix: alength= 4 w= 7 nsites= 59 E= 2.5e-010
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.474576 0.000000 0.000000 0.525424


MOTIF AAAAWAAW DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAWAAW   WTTWTTTT        115         40   1.4e-011   3.8e-007
#         AAAAAAAT   ATTTTTTT         68         21   7.4e-008   2.1e-003
#         AAAAAAAA   TTTTTTTT         46         18   1.9e-004   5.3e+000
#         AAAATAAT   ATTATTTT         17          2   3.2e-004   8.9e+000
#         AAAATAAA   TTTATTTT         28         11   4.0e-003   1.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 127 E= 3.8e-007
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.700787 0.000000 0.000000 0.299213
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.472441 0.000000 0.000000 0.527559


MOTIF CCAACW DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CCAACW     WGTTGG         75         29   9.4e-007   2.6e-002
#           CCAACT     AGTTGG         36         11   1.2e-004   3.3e+000
#           CCAACA     TGTTGG         41         18   1.4e-003   3.8e+001

letter-probability matrix: alength= 4 w= 6 nsites= 79 E= 2.6e-002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.518987 0.000000 0.000000 0.481013


# Stopping reason: E-value threshold exceeded
#    Running time: 18.18 seconds