Invoking:
  getsize aa_memeout/aa_peaks.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.042475
Invoking:
  fasta-most -min 50 < aa_memeout/aa_peaks.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.069381
Invoking:
  fasta-center -dna -len 100 < aa_memeout/aa_peaks.fa 1> aa_memeout/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.085431
Invoking:
  fasta-shuffle-letters aa_memeout/seqs-centered aa_memeout/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.04384
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 aa_memeout/aa_peaks.fa aa_memeout/background
Finished invoke:
  name: bg  status: 0  time: 0.025653
Invoking:
  meme aa_memeout/seqs-centered -oc aa_memeout/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile aa_memeout/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 592.714967
Invoking:
  dreme -v 1 -oc aa_memeout/dreme_out -png -dna -p aa_memeout/seqs-centered -n aa_memeout/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 64.114303
Invoking:
  centrimo -seqlen 410 -verbosity 1 -oc aa_memeout/centrimo_out -bfile aa_memeout/background aa_memeout/aa_peaks.fa aa_memeout/meme_out/meme.xml aa_memeout/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.300163
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 aa_memeout/combined.meme aa_memeout/combined.meme 1> aa_memeout/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.436473
Invoking:
  spamo -verbosity 1 -oc aa_memeout/spamo_out_1 -bgfile aa_memeout/background -primary RTCMBSGGTTCGATYCCSVKH aa_memeout/aa_peaks.fa aa_memeout/meme_out/meme.xml aa_memeout/meme_out/meme.xml aa_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 1.228056
Invoking:
  spamo -verbosity 1 -oc aa_memeout/spamo_out_2 -bgfile aa_memeout/background -primary DTGGYYYAGTKGKTWRAGSS aa_memeout/aa_peaks.fa aa_memeout/meme_out/meme.xml aa_memeout/meme_out/meme.xml aa_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 1.331147
Invoking:
  spamo -verbosity 1 -oc aa_memeout/spamo_out_3 -bgfile aa_memeout/background -primary DRATGTAYGGRTGTW aa_memeout/aa_peaks.fa aa_memeout/meme_out/meme.xml aa_memeout/meme_out/meme.xml aa_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.974177
Invoking:
  spamo -verbosity 1 -oc aa_memeout/spamo_out_4 -bgfile aa_memeout/background -primary AARAAAWA aa_memeout/aa_peaks.fa aa_memeout/dreme_out/dreme.xml aa_memeout/meme_out/meme.xml aa_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.8014
Invoking:
  spamo -verbosity 1 -oc aa_memeout/spamo_out_5 -bgfile aa_memeout/background -primary CCYTAACC aa_memeout/aa_peaks.fa aa_memeout/dreme_out/dreme.xml aa_memeout/meme_out/meme.xml aa_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.652111
Invoking:
  spamo -verbosity 1 -oc aa_memeout/spamo_out_6 -bgfile aa_memeout/background -primary BGCGC aa_memeout/aa_peaks.fa aa_memeout/dreme_out/dreme.xml aa_memeout/meme_out/meme.xml aa_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.95029
Invoking:
  spamo -verbosity 1 -oc aa_memeout/spamo_out_7 -bgfile aa_memeout/background -primary AGAYCGGG aa_memeout/aa_peaks.fa aa_memeout/dreme_out/dreme.xml aa_memeout/meme_out/meme.xml aa_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.442582
Invoking:
  spamo -verbosity 1 -oc aa_memeout/spamo_out_8 -bgfile aa_memeout/background -primary GTGATAGY aa_memeout/aa_peaks.fa aa_memeout/dreme_out/dreme.xml aa_memeout/meme_out/meme.xml aa_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.413083
Invoking:
  spamo -verbosity 1 -oc aa_memeout/spamo_out_9 -bgfile aa_memeout/background -primary ATGGCAWC aa_memeout/aa_peaks.fa aa_memeout/dreme_out/dreme.xml aa_memeout/meme_out/meme.xml aa_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.635568
Invoking:
  spamo -verbosity 1 -oc aa_memeout/spamo_out_10 -bgfile aa_memeout/background -primary ACCGTGS aa_memeout/aa_peaks.fa aa_memeout/dreme_out/dreme.xml aa_memeout/meme_out/meme.xml aa_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.46981
Invoking:
  spamo -verbosity 1 -oc aa_memeout/spamo_out_11 -bgfile aa_memeout/background -primary GATYAGAA aa_memeout/aa_peaks.fa aa_memeout/dreme_out/dreme.xml aa_memeout/meme_out/meme.xml aa_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.417827
Invoking:
  spamo -verbosity 1 -oc aa_memeout/spamo_out_12 -bgfile aa_memeout/background -primary ACTSACG aa_memeout/aa_peaks.fa aa_memeout/dreme_out/dreme.xml aa_memeout/meme_out/meme.xml aa_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.460032
Invoking:
  spamo -verbosity 1 -oc aa_memeout/spamo_out_13 -bgfile aa_memeout/background -primary CASACGC aa_memeout/aa_peaks.fa aa_memeout/dreme_out/dreme.xml aa_memeout/meme_out/meme.xml aa_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.46064
Invoking:
  spamo -verbosity 1 -oc aa_memeout/spamo_out_14 -bgfile aa_memeout/background -primary KTAGCTCA aa_memeout/aa_peaks.fa aa_memeout/dreme_out/dreme.xml aa_memeout/meme_out/meme.xml aa_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.362718
Invoking:
  spamo -verbosity 1 -oc aa_memeout/spamo_out_15 -bgfile aa_memeout/background -primary ACACSCA aa_memeout/aa_peaks.fa aa_memeout/dreme_out/dreme.xml aa_memeout/meme_out/meme.xml aa_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo15  status: 0  time: 0.495233
Invoking:
  spamo -verbosity 1 -oc aa_memeout/spamo_out_16 -bgfile aa_memeout/background -primary TCKCCCA aa_memeout/aa_peaks.fa aa_memeout/dreme_out/dreme.xml aa_memeout/meme_out/meme.xml aa_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo16  status: 0  time: 0.411838
Invoking:
  spamo -verbosity 1 -oc aa_memeout/spamo_out_17 -bgfile aa_memeout/background -primary ATCYCCGC aa_memeout/aa_peaks.fa aa_memeout/dreme_out/dreme.xml aa_memeout/meme_out/meme.xml aa_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo17  status: 0  time: 0.514474
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc aa_memeout/fimo_out_1 --bgfile aa_memeout/background --motif RTCMBSGGTTCGATYCCSVKH aa_memeout/meme_out/meme.xml aa_memeout/aa_peaks.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.299159
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc aa_memeout/fimo_out_2 --bgfile aa_memeout/background --motif DTGGYYYAGTKGKTWRAGSS aa_memeout/meme_out/meme.xml aa_memeout/aa_peaks.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.42478
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc aa_memeout/fimo_out_3 --bgfile aa_memeout/background --motif DRATGTAYGGRTGTW aa_memeout/meme_out/meme.xml aa_memeout/aa_peaks.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.275842
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc aa_memeout/fimo_out_4 --bgfile aa_memeout/background --motif AARAAAWA aa_memeout/dreme_out/dreme.xml aa_memeout/aa_peaks.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.166266
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc aa_memeout/fimo_out_5 --bgfile aa_memeout/background --motif CCYTAACC aa_memeout/dreme_out/dreme.xml aa_memeout/aa_peaks.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.191868
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc aa_memeout/fimo_out_6 --bgfile aa_memeout/background --motif BGCGC aa_memeout/dreme_out/dreme.xml aa_memeout/aa_peaks.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.206243
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc aa_memeout/fimo_out_7 --bgfile aa_memeout/background --motif AGAYCGGG aa_memeout/dreme_out/dreme.xml aa_memeout/aa_peaks.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.13821
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc aa_memeout/fimo_out_8 --bgfile aa_memeout/background --motif GTGATAGY aa_memeout/dreme_out/dreme.xml aa_memeout/aa_peaks.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.146419
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc aa_memeout/fimo_out_9 --bgfile aa_memeout/background --motif ATGGCAWC aa_memeout/dreme_out/dreme.xml aa_memeout/aa_peaks.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.184509
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc aa_memeout/fimo_out_10 --bgfile aa_memeout/background --motif ACCGTGS aa_memeout/dreme_out/dreme.xml aa_memeout/aa_peaks.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.223887
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc aa_memeout/fimo_out_11 --bgfile aa_memeout/background --motif GATYAGAA aa_memeout/dreme_out/dreme.xml aa_memeout/aa_peaks.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.190289
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc aa_memeout/fimo_out_12 --bgfile aa_memeout/background --motif ACTSACG aa_memeout/dreme_out/dreme.xml aa_memeout/aa_peaks.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.12813
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc aa_memeout/fimo_out_13 --bgfile aa_memeout/background --motif CASACGC aa_memeout/dreme_out/dreme.xml aa_memeout/aa_peaks.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.16122
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc aa_memeout/fimo_out_14 --bgfile aa_memeout/background --motif KTAGCTCA aa_memeout/dreme_out/dreme.xml aa_memeout/aa_peaks.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.128754
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc aa_memeout/fimo_out_15 --bgfile aa_memeout/background --motif ACACSCA aa_memeout/dreme_out/dreme.xml aa_memeout/aa_peaks.fa
Finished invoke:
  name: fimo15  status: 0  time: 0.214211
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc aa_memeout/fimo_out_16 --bgfile aa_memeout/background --motif TCKCCCA aa_memeout/dreme_out/dreme.xml aa_memeout/aa_peaks.fa
Finished invoke:
  name: fimo16  status: 0  time: 0.136513
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc aa_memeout/fimo_out_17 --bgfile aa_memeout/background --motif ATCYCCGC aa_memeout/dreme_out/dreme.xml aa_memeout/aa_peaks.fa
Finished invoke:
  name: fimo17  status: 0  time: 0.151207
Writing output
Invoking:
  meme-chip_html_to_tsv aa_memeout/meme-chip.html aa_memeout/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.376019
Done