# DREME 4.12.0
#     command: dreme -v 1 -oc intersect_memeout/dreme_out -png -dna -p intersect_memeout/seqs-centered -n intersect_memeout/seqs-shuffled
#   positives: 519 from intersect_memeout/seqs-centered (Sat Nov 23 19:07:14 PST 2019)
#   negatives: 519 from intersect_memeout/seqs-shuffled (Sat Nov 23 19:07:14 PST 2019)
#        host: kali.stanford.edu
#        when: Sat Nov 23 19:28:55 PST 2019

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.315 C 0.194 G 0.188 T 0.303


MOTIF GGWTCGA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     GGWTCGA    TCGAWCC         67          5   4.5e-016   1.3e-011
#          GGTTCGA    TCGAACC         56          3   1.5e-014   4.3e-010
#          GGATCGA    TCGATCC         15          2   1.1e-003   3.2e+001

letter-probability matrix: alength= 4 w= 7 nsites= 67 E= 1.3e-011
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.208955 0.000000 0.000000 0.791045
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGTGGTW DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     AGTGGTW    WACCACT         67          9   3.9e-013   1.1e-008
#          AGTGGTA    TACCACT         39          1   1.8e-011   5.5e-007
#          AGTGGTT    AACCACT         36          8   8.6e-006   2.6e-001

letter-probability matrix: alength= 4 w= 7 nsites= 79 E= 1.1e-008
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.518987 0.000000 0.000000 0.481013


MOTIF AAAARGAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAARGAA   TTCYTTTT         53         12   5.9e-008   1.7e-003
#         AAAAAGAA   TTCTTTTT         36          9   2.3e-005   6.8e-001
#         AAAAGGAA   TTCCTTTT         17          3   1.2e-003   3.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 1.7e-003
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.685185 0.000000 0.314815 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AACCRACT DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACCRACT   AGTYGGTT         29          2   1.6e-007   4.8e-003
#         AACCAACT   AGTTGGTT         21          2   2.8e-005   8.2e-001
#         AACCGACT   AGTCGGTT          8          0   3.8e-003   1.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 4.8e-003
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.724138 0.000000 0.275862 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 19.32 seconds