Invoking:
  getsize gm_memeout/gm_peaks.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.020386
Invoking:
  fasta-most -min 50 < gm_memeout/gm_peaks.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.073048
Invoking:
  fasta-center -dna -len 100 < gm_memeout/gm_peaks.fa 1> gm_memeout/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.087277
Invoking:
  fasta-shuffle-letters gm_memeout/seqs-centered gm_memeout/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.010184
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 gm_memeout/gm_peaks.fa gm_memeout/background
Finished invoke:
  name: bg  status: 0  time: 0.011913
Invoking:
  meme gm_memeout/seqs-centered -oc gm_memeout/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile gm_memeout/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 2088.804552
Invoking:
  dreme -v 1 -oc gm_memeout/dreme_out -png -dna -p gm_memeout/seqs-centered -n gm_memeout/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 31.699762
Invoking:
  centrimo -seqlen 902 -verbosity 1 -oc gm_memeout/centrimo_out -bfile gm_memeout/background gm_memeout/gm_peaks.fa gm_memeout/meme_out/meme.xml gm_memeout/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.151157
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 gm_memeout/combined.meme gm_memeout/combined.meme 1> gm_memeout/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.335557
Invoking:
  spamo -verbosity 1 -oc gm_memeout/spamo_out_1 -bgfile gm_memeout/background -primary AAYCDKRAGRTCMBSGGTTCGABYCCSVK gm_memeout/gm_peaks.fa gm_memeout/meme_out/meme.xml gm_memeout/meme_out/meme.xml gm_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 1.147867
Invoking:
  spamo -verbosity 1 -oc gm_memeout/spamo_out_2 -bgfile gm_memeout/background -primary WGSBYNYDTGGCCBAGTBGKTWRAGS gm_memeout/gm_peaks.fa gm_memeout/meme_out/meme.xml gm_memeout/meme_out/meme.xml gm_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 1.143565
Invoking:
  spamo -verbosity 1 -oc gm_memeout/spamo_out_3 -bgfile gm_memeout/background -primary TGTGRTGTRTGGGTG gm_memeout/gm_peaks.fa gm_memeout/meme_out/meme.xml gm_memeout/meme_out/meme.xml gm_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.841447
Invoking:
  spamo -verbosity 1 -oc gm_memeout/spamo_out_4 -bgfile gm_memeout/background -primary ARAAAAR gm_memeout/gm_peaks.fa gm_memeout/dreme_out/dreme.xml gm_memeout/meme_out/meme.xml gm_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.921134
Invoking:
  spamo -verbosity 1 -oc gm_memeout/spamo_out_5 -bgfile gm_memeout/background -primary CCWTAACC gm_memeout/gm_peaks.fa gm_memeout/dreme_out/dreme.xml gm_memeout/meme_out/meme.xml gm_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.498507
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc gm_memeout/fimo_out_1 --bgfile gm_memeout/background --motif AAYCDKRAGRTCMBSGGTTCGABYCCSVK gm_memeout/meme_out/meme.xml gm_memeout/gm_peaks.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.413857
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc gm_memeout/fimo_out_2 --bgfile gm_memeout/background --motif WGSBYNYDTGGCCBAGTBGKTWRAGS gm_memeout/meme_out/meme.xml gm_memeout/gm_peaks.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.410217
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc gm_memeout/fimo_out_3 --bgfile gm_memeout/background --motif TGTGRTGTRTGGGTG gm_memeout/meme_out/meme.xml gm_memeout/gm_peaks.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.403414
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc gm_memeout/fimo_out_4 --bgfile gm_memeout/background --motif ARAAAAR gm_memeout/dreme_out/dreme.xml gm_memeout/gm_peaks.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.287871
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc gm_memeout/fimo_out_5 --bgfile gm_memeout/background --motif CCWTAACC gm_memeout/dreme_out/dreme.xml gm_memeout/gm_peaks.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.379884
Writing output
Invoking:
  meme-chip_html_to_tsv gm_memeout/meme-chip.html gm_memeout/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.147683
Done