******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= gm_memeout/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:7-1377 1.0000 100 chrI:81890-82271 1.0000 100 chrI:138854-139395 1.0000 100 chrI:141721-143705 1.0000 100 chrI:166006-166809 1.0000 100 chrI:180903-181517 1.0000 100 chrI:182327-182810 1.0000 100 chrI:229231-230193 1.0000 100 chrII:6044-7131 1.0000 100 chrII:9296-9934 1.0000 100 chrII:36134-36569 1.0000 100 chrII:44961-45350 1.0000 100 chrII:60086-61340 1.0000 100 chrII:87964-88555 1.0000 100 chrII:88971-89998 1.0000 100 chrII:164649-164897 1.0000 100 chrII:165058-165692 1.0000 100 chrII:167650-169698 1.0000 100 chrII:181315-181677 1.0000 100 chrII:197136-197868 1.0000 100 chrII:226824-227683 1.0000 100 chrII:254777-255790 1.0000 100 chrII:266132-266707 1.0000 100 chrII:301164-301584 1.0000 100 chrII:326581-327610 1.0000 100 chrII:332215-333446 1.0000 100 chrII:347372-348139 1.0000 100 chrII:350465-351151 1.0000 100 chrII:405585-406309 1.0000 100 chrII:415477-415941 1.0000 100 chrII:476828-477786 1.0000 100 chrII:478964-479461 1.0000 100 chrII:479649-479892 1.0000 100 chrII:556081-558470 1.0000 100 chrII:592351-593457 1.0000 100 chrII:604090-607612 1.0000 100 chrII:642861-643262 1.0000 100 chrII:644955-645492 1.0000 100 chrII:680934-682212 1.0000 100 chrIII:2-1645 1.0000 100 chrIII:11069-11549 1.0000 100 chrIII:13981-16629 1.0000 100 chrIII:28867-31938 1.0000 100 chrIII:58726-58988 1.0000 100 chrIII:81980-82788 1.0000 100 chrIII:123303-123833 1.0000 100 chrIII:127507-127924 1.0000 100 chrIII:142173-143114 1.0000 100 chrIII:147728-148201 1.0000 100 chrIII:161727-163908 1.0000 100 chrIII:168067-168632 1.0000 100 chrIII:177032-179277 1.0000 100 chrIII:227622-228215 1.0000 100 chrIII:292287-293093 1.0000 100 chrIII:293644-294419 1.0000 100 chrIII:294590-295934 1.0000 100 chrIII:296167-296375 1.0000 100 chrIII:316218-316618 1.0000 100 chrIV:28-325 1.0000 100 chrIV:83230-83805 1.0000 100 chrIV:116862-118232 1.0000 100 chrIV:129455-131003 1.0000 100 chrIV:217027-218081 1.0000 100 chrIV:221038-222374 1.0000 100 chrIV:229449-230688 1.0000 100 chrIV:307973-309778 1.0000 100 chrIV:321687-323602 1.0000 100 chrIV:340181-341628 1.0000 100 chrIV:355120-356933 1.0000 100 chrIV:358108-358466 1.0000 100 chrIV:359312-359898 1.0000 100 chrIV:410108-410715 1.0000 100 chrIV:411240-411652 1.0000 100 chrIV:433979-435095 1.0000 100 chrIV:437480-438107 1.0000 100 chrIV:488415-489138 1.0000 100 chrIV:490444-491898 1.0000 100 chrIV:519495-520297 1.0000 100 chrIV:520458-521300 1.0000 100 chrIV:525062-525377 1.0000 100 chrIV:539011-539209 1.0000 100 chrIV:540954-542089 1.0000 100 chrIV:555378-555874 1.0000 100 chrIV:568536-569220 1.0000 100 chrIV:579010-581059 1.0000 100 chrIV:619636-620302 1.0000 100 chrIV:644989-645393 1.0000 100 chrIV:667770-668285 1.0000 100 chrIV:802120-803048 1.0000 100 chrIV:835786-836307 1.0000 100 chrIV:884092-884669 1.0000 100 chrIV:915367-915560 1.0000 100 chrIV:915821-916271 1.0000 100 chrIV:946138-946617 1.0000 100 chrIV:980749-981315 1.0000 100 chrIV:992549-993090 1.0000 100 chrIV:1013063-1013930 1.0000 100 chrIV:1016886-1017523 1.0000 100 chrIV:1062719-1063147 1.0000 100 chrIV:1075227-1075836 1.0000 100 chrIV:1094931-1095781 1.0000 100 chrIV:1150216-1151582 1.0000 100 chrIV:1175518-1176179 1.0000 100 chrIV:1201314-1202137 1.0000 100 chrIV:1236814-1238479 1.0000 100 chrIV:1256867-1257331 1.0000 100 chrIV:1300272-1301346 1.0000 100 chrIV:1304948-1306341 1.0000 100 chrIV:1352317-1352772 1.0000 100 chrIV:1352989-1353167 1.0000 100 chrIV:1355691-1356065 1.0000 100 chrIV:1359216-1360522 1.0000 100 chrIV:1401222-1401921 1.0000 100 chrIV:1402411-1403478 1.0000 100 chrIV:1449791-1451331 1.0000 100 chrIV:1461478-1462177 1.0000 100 chrIV:1488907-1489946 1.0000 100 chrIV:1524033-1525649 1.0000 100 chrIX:2-205 1.0000 100 chrIX:67479-69909 1.0000 100 chrIX:99640-100081 1.0000 100 chrIX:131763-132077 1.0000 100 chrIX:174807-175320 1.0000 100 chrIX:182509-183734 1.0000 100 chrIX:197300-198088 1.0000 100 chrIX:210497-211288 1.0000 100 chrIX:232736-233021 1.0000 100 chrIX:248640-249363 1.0000 100 chrIX:254235-254536 1.0000 100 chrIX:255021-258071 1.0000 100 chrIX:299998-301210 1.0000 100 chrIX:316112-317421 1.0000 100 chrIX:324007-324623 1.0000 100 chrIX:324876-325032 1.0000 100 chrIX:325492-326288 1.0000 100 chrIX:336130-336810 1.0000 100 chrIX:370102-370717 1.0000 100 chrIX:438531-439886 1.0000 100 chrM:58218-58901 1.0000 100 chrM:60479-60946 1.0000 100 chrM:61105-61504 1.0000 100 chrV:6137-6995 1.0000 100 chrV:51933-52881 1.0000 100 chrV:53473-54282 1.0000 100 chrV:61009-62222 1.0000 100 chrV:78111-78821 1.0000 100 chrV:85146-85690 1.0000 100 chrV:85943-86947 1.0000 100 chrV:99653-100375 1.0000 100 chrV:110067-111375 1.0000 100 chrV:117558-118465 1.0000 100 chrV:130775-131425 1.0000 100 chrV:135141-135722 1.0000 100 chrV:138286-140884 1.0000 100 chrV:176808-177400 1.0000 100 chrV:207021-207730 1.0000 100 chrV:250089-250795 1.0000 100 chrV:269089-270782 1.0000 100 chrV:288037-288754 1.0000 100 chrV:301566-302459 1.0000 100 chrV:304688-306716 1.0000 100 chrV:311864-312458 1.0000 100 chrV:321766-323260 1.0000 100 chrV:354649-355680 1.0000 100 chrV:361869-362541 1.0000 100 chrV:396158-397314 1.0000 100 chrV:406068-409209 1.0000 100 chrV:423104-424049 1.0000 100 chrV:430996-431625 1.0000 100 chrV:433689-434786 1.0000 100 chrV:434945-436045 1.0000 100 chrV:438151-438984 1.0000 100 chrV:441570-442724 1.0000 100 chrV:443034-443544 1.0000 100 chrV:469237-469772 1.0000 100 chrV:487075-487634 1.0000 100 chrV:492117-492591 1.0000 100 chrV:550992-551743 1.0000 100 chrVI:4473-5117 1.0000 100 chrVI:63941-65433 1.0000 100 chrVI:82406-84528 1.0000 100 chrVI:95484-95825 1.0000 100 chrVI:100871-101633 1.0000 100 chrVI:137094-137908 1.0000 100 chrVI:157676-158305 1.0000 100 chrVI:161727-162480 1.0000 100 chrVI:167253-167960 1.0000 100 chrVI:180611-181228 1.0000 100 chrVI:191310-191880 1.0000 100 chrVI:204752-205563 1.0000 100 chrVI:210409-210900 1.0000 100 chrVI:221506-222086 1.0000 100 chrVI:223763-224160 1.0000 100 chrVI:226524-226961 1.0000 100 chrVI:268370-270159 1.0000 100 chrVII:13-1869 1.0000 100 chrVII:10165-10664 1.0000 100 chrVII:73648-74420 1.0000 100 chrVII:84288-84694 1.0000 100 chrVII:110380-110971 1.0000 100 chrVII:115212-116056 1.0000 100 chrVII:122056-122737 1.0000 100 chrVII:147397-149544 1.0000 100 chrVII:185391-186070 1.0000 100 chrVII:205287-205809 1.0000 100 chrVII:228493-228809 1.0000 100 chrVII:253918-254732 1.0000 100 chrVII:277011-277398 1.0000 100 chrVII:286912-288132 1.0000 100 chrVII:310400-312693 1.0000 100 chrVII:319565-320296 1.0000 100 chrVII:327827-329036 1.0000 100 chrVII:345856-346572 1.0000 100 chrVII:364892-366741 1.0000 100 chrVII:371264-371460 1.0000 100 chrVII:400977-401798 1.0000 100 chrVII:405280-405779 1.0000 100 chrVII:412106-412624 1.0000 100 chrVII:422911-423513 1.0000 100 chrVII:438562-439884 1.0000 100 chrVII:440293-442049 1.0000 100 chrVII:479132-482989 1.0000 100 chrVII:531451-532614 1.0000 100 chrVII:533564-535239 1.0000 100 chrVII:541553-542202 1.0000 100 chrVII:544301-546175 1.0000 100 chrVII:555187-557569 1.0000 100 chrVII:561322-561984 1.0000 100 chrVII:648835-649493 1.0000 100 chrVII:661328-661963 1.0000 100 chrVII:700108-701308 1.0000 100 chrVII:706894-707351 1.0000 100 chrVII:725977-727453 1.0000 100 chrVII:730916-731440 1.0000 100 chrVII:736177-736698 1.0000 100 chrVII:738747-739340 1.0000 100 chrVII:773970-775030 1.0000 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chrX:390844-391308 1.0000 100 chrX:396550-397094 1.0000 100 chrX:414721-415382 1.0000 100 chrX:415726-416720 1.0000 100 chrX:422648-423458 1.0000 100 chrX:424330-424744 1.0000 100 chrX:517609-518177 1.0000 100 chrX:523744-524313 1.0000 100 chrX:531454-532220 1.0000 100 chrX:538316-539141 1.0000 100 chrX:540446-541772 1.0000 100 chrX:542743-543739 1.0000 100 chrX:607815-609089 1.0000 100 chrX:617742-618182 1.0000 100 chrX:651188-651668 1.0000 100 chrX:651936-652925 1.0000 100 chrX:663636-664204 1.0000 100 chrX:690532-690787 1.0000 100 chrX:702731-703649 1.0000 100 chrX:745260-745743 1.0000 100 chrXI:1-276 1.0000 100 chrXI:25478-26570 1.0000 100 chrXI:46546-47192 1.0000 100 chrXI:67744-68045 1.0000 100 chrXI:74440-74955 1.0000 100 chrXI:83951-84455 1.0000 100 chrXI:108507-109108 1.0000 100 chrXI:109567-110472 1.0000 100 chrXI:140730-142495 1.0000 100 chrXI:158193-159627 1.0000 100 chrXI:162003-162785 1.0000 100 chrXI:202815-203326 1.0000 100 chrXI:219412-220129 1.0000 100 chrXI:301939-302356 1.0000 100 chrXI:302529-303703 1.0000 100 chrXI:308016-308427 1.0000 100 chrXI:313136-314018 1.0000 100 chrXI:322464-322651 1.0000 100 chrXI:326058-327166 1.0000 100 chrXI:379482-380060 1.0000 100 chrXI:382195-382420 1.0000 100 chrXI:430791-431697 1.0000 100 chrXI:458323-459116 1.0000 100 chrXI:490216-491340 1.0000 100 chrXI:513196-513932 1.0000 100 chrXI:517157-517515 1.0000 100 chrXI:517740-518164 1.0000 100 chrXI:551239-551768 1.0000 100 chrXI:578758-579316 1.0000 100 chrXI:617676-619232 1.0000 100 chrXI:665355-666797 1.0000 100 chrXII:6-230 1.0000 100 chrXII:5471-5921 1.0000 100 chrXII:11017-12036 1.0000 100 chrXII:48599-49112 1.0000 100 chrXII:84167-84647 1.0000 100 chrXII:91494-92871 1.0000 100 chrXII:167712-168542 1.0000 100 chrXII:199089-199699 1.0000 100 chrXII:202489-203048 1.0000 100 chrXII:209926-210558 1.0000 100 chrXII:214646-215224 1.0000 100 chrXII:232089-234251 1.0000 100 chrXII:241529-242786 1.0000 100 chrXII:262712-263936 1.0000 100 chrXII:282162-283063 1.0000 100 chrXII:348194-348885 1.0000 100 chrXII:365863-366598 1.0000 100 chrXII:369202-370234 1.0000 100 chrXII:370558-370942 1.0000 100 chrXII:374187-374687 1.0000 100 chrXII:403966-404650 1.0000 100 chrXII:424196-424450 1.0000 100 chrXII:426906-427506 1.0000 100 chrXII:448480-449117 1.0000 100 chrXII:459629-460711 1.0000 100 chrXII:489288-489554 1.0000 100 chrXII:498428-499900 1.0000 100 chrXII:522130-522999 1.0000 100 chrXII:592352-593227 1.0000 100 chrXII:605131-605687 1.0000 100 chrXII:628126-629109 1.0000 100 chrXII:637164-640318 1.0000 100 chrXII:650368-651273 1.0000 100 chrXII:656679-657984 1.0000 100 chrXII:673287-674521 1.0000 100 chrXII:687613-688224 1.0000 100 chrXII:712247-713597 1.0000 100 chrXII:729972-730659 1.0000 100 chrXII:731825-732266 1.0000 100 chrXII:734699-735245 1.0000 100 chrXII:780671-781903 1.0000 100 chrXII:784126-784803 1.0000 100 chrXII:793718-797429 1.0000 100 chrXII:805349-806199 1.0000 100 chrXII:806420-807317 1.0000 100 chrXII:817715-820540 1.0000 100 chrXII:837656-839025 1.0000 100 chrXII:855668-857980 1.0000 100 chrXII:875249-875694 1.0000 100 chrXII:897629-899609 1.0000 100 chrXII:921645-922629 1.0000 100 chrXII:932064-932525 1.0000 100 chrXII:962805-963751 1.0000 100 chrXII:975730-976309 1.0000 100 chrXII:1018867-1019399 1.0000 100 chrXII:1028125-1028595 1.0000 100 chrXII:1051594-1052916 1.0000 100 chrXII:1063975-1065357 1.0000 100 chrXIII:22-191 1.0000 100 chrXIII:5313-5736 1.0000 100 chrXIII:23717-25995 1.0000 100 chrXIII:91606-92098 1.0000 100 chrXIII:122853-124720 1.0000 100 chrXIII:131133-132225 1.0000 100 chrXIII:145804-146525 1.0000 100 chrXIII:162699-164317 1.0000 100 chrXIII:168529-169119 1.0000 100 chrXIII:183702-184200 1.0000 100 chrXIII:195914-196443 1.0000 100 chrXIII:222582-224430 1.0000 100 chrXIII:225324-226967 1.0000 100 chrXIII:259005-259569 1.0000 100 chrXIII:267775-268822 1.0000 100 chrXIII:289480-291378 1.0000 100 chrXIII:296710-299566 1.0000 100 chrXIII:302876-303129 1.0000 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1.0000 100 chrXIV:102408-103079 1.0000 100 chrXIV:104593-105148 1.0000 100 chrXIV:173857-174661 1.0000 100 chrXIV:229438-230911 1.0000 100 chrXIV:241352-241748 1.0000 100 chrXIV:302342-302691 1.0000 100 chrXIV:302994-303704 1.0000 100 chrXIV:330506-332557 1.0000 100 chrXIV:374626-375197 1.0000 100 chrXIV:375617-375786 1.0000 100 chrXIV:442818-444172 1.0000 100 chrXIV:444429-444856 1.0000 100 chrXIV:493686-495612 1.0000 100 chrXIV:499009-499780 1.0000 100 chrXIV:499972-502062 1.0000 100 chrXIV:546936-547374 1.0000 100 chrXIV:560173-561191 1.0000 100 chrXIV:567837-568683 1.0000 100 chrXIV:569607-570157 1.0000 100 chrXIV:575049-575859 1.0000 100 chrXIV:585370-586535 1.0000 100 chrXIV:602115-602577 1.0000 100 chrXIV:613219-613730 1.0000 100 chrXIV:631721-632150 1.0000 100 chrXIV:632359-632896 1.0000 100 chrXIV:715516-716669 1.0000 100 chrXIV:725754-726439 1.0000 100 chrXIV:783348-784325 1.0000 100 chrXV:6-1042 1.0000 100 chrXV:33131-33785 1.0000 100 chrXV:79093-80121 1.0000 100 chrXV:92075-94888 1.0000 100 chrXV:109571-111279 1.0000 100 chrXV:113361-114121 1.0000 100 chrXV:159321-160737 1.0000 100 chrXV:161083-161661 1.0000 100 chrXV:167730-168473 1.0000 100 chrXV:216252-216681 1.0000 100 chrXV:226406-226945 1.0000 100 chrXV:227962-228612 1.0000 100 chrXV:253489-254340 1.0000 100 chrXV:274489-275018 1.0000 100 chrXV:281530-282591 1.0000 100 chrXV:287944-288437 1.0000 100 chrXV:300820-301480 1.0000 100 chrXV:339764-340677 1.0000 100 chrXV:353803-354891 1.0000 100 chrXV:438370-439070 1.0000 100 chrXV:444909-446145 1.0000 100 chrXV:464186-464687 1.0000 100 chrXV:487175-487730 1.0000 100 chrXV:505072-505515 1.0000 100 chrXV:571378-572259 1.0000 100 chrXV:594119-594914 1.0000 100 chrXV:619632-624684 1.0000 100 chrXV:663453-664356 1.0000 100 chrXV:677956-679221 1.0000 100 chrXV:709952-710534 1.0000 100 chrXV:728961-730197 1.0000 100 chrXV:779687-780898 1.0000 100 chrXV:796966-797882 1.0000 100 chrXV:832299-832849 1.0000 100 chrXV:842428-843284 1.0000 100 chrXV:853989-854439 1.0000 100 chrXV:866566-868427 1.0000 100 chrXV:900033-901690 1.0000 100 chrXV:925196-925402 1.0000 100 chrXV:968129-968410 1.0000 100 chrXV:976142-977328 1.0000 100 chrXV:978832-979130 1.0000 100 chrXV:979813-981042 1.0000 100 chrXV:1003791-1005325 1.0000 100 chrXV:1025726-1026627 1.0000 100 chrXV:1027290-1029670 1.0000 100 chrXVI:55783-56555 1.0000 100 chrXVI:76167-76724 1.0000 100 chrXVI:122925-124297 1.0000 100 chrXVI:135447-135877 1.0000 100 chrXVI:172741-174126 1.0000 100 chrXVI:188615-189019 1.0000 100 chrXVI:209577-209741 1.0000 100 chrXVI:209905-210528 1.0000 100 chrXVI:210715-211033 1.0000 100 chrXVI:280636-282778 1.0000 100 chrXVI:302590-303254 1.0000 100 chrXVI:338705-339162 1.0000 100 chrXVI:378674-379038 1.0000 100 chrXVI:404548-405781 1.0000 100 chrXVI:406204-407859 1.0000 100 chrXVI:433444-434397 1.0000 100 chrXVI:435636-436583 1.0000 100 chrXVI:515149-517033 1.0000 100 chrXVI:520155-520820 1.0000 100 chrXVI:559990-560983 1.0000 100 chrXVI:571561-573072 1.0000 100 chrXVI:581654-582469 1.0000 100 chrXVI:622125-622855 1.0000 100 chrXVI:653754-655033 1.0000 100 chrXVI:689083-690438 1.0000 100 chrXVI:699915-700677 1.0000 100 chrXVI:718451-719459 1.0000 100 chrXVI:731690-732337 1.0000 100 chrXVI:743729-744700 1.0000 100 chrXVI:768498-769513 1.0000 100 chrXVI:775656-776216 1.0000 100 chrXVI:794383-796081 1.0000 100 chrXVI:810390-810945 1.0000 100 chrXVI:818768-819958 1.0000 100 chrXVI:856461-857177 1.0000 100 chrXVI:860037-860594 1.0000 100 chrXVI:866445-866763 1.0000 100 chrXVI:880067-880570 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme gm_memeout/seqs-centered -oc gm_memeout/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile gm_memeout/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 570 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 57000 N= 570 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.308 C 0.192 G 0.192 T 0.308 Background letter frequencies (from gm_memeout/background): A 0.319 C 0.181 G 0.181 T 0.319 ******************************************************************************** ******************************************************************************** MOTIF AAYCDKRAGRTCMBSGGTTCGABYCCSVK MEME-1 width = 29 sites = 68 llr = 1424 E-value = 7.1e-301 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAYCDKRAGRTCMBSGGTTCGABYCCSVK MEME-1 Description -------------------------------------------------------------------------------- Simplified A 78::3257252:4:12::::3a2:::13: pos.-specific C 1:3811::1:17533::::a::35a7541 probability G 1112454275::2358a:::7:2:::335 matrix T :15:231:1:73:41::aa:::45:31:4 bits 2.5 * * * 2.2 * * * 2.0 * * * 1.7 * * ** * * Relative 1.5 * * ****** * Entropy 1.2 * * ******* ** (30.2 bits) 1.0 * ** * ******* **** 0.7 * * *** * ******** ***** 0.5 **** **************** ****** 0.2 ********************** ****** 0.0 ----------------------------- Multilevel AATCGGAAGGTCCTGGGTTCGATTCCCCG consensus C ATGG AATAGCA A CC TGAT sequence A C G G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAYCDKRAGRTCMBSGGTTCGABYCCSVK MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrIII:123303-123833 - 68 1.77e-13 TAGG GTGCGGGAGGTCCCGGGTTCGAGTCCCGG CTCGCCCCAC chrXIII:480403-480925 - 16 6.71e-13 TATGACTCTT AATCATAAGGTTAGGGGTTCGAGCCCCCT ACAGGGCTTC chrXI:202815-203326 + 15 6.71e-13 TATGACTCTT AATCATAAGGTTAGGGGTTCGAGCCCCCT ACAGGGCTTT chrX:414721-415382 + 1 6.71e-13 . AATCATAAGGTTAGGGGTTCGAGCCCCCT ACAGGGCTAA chrVII:876095-876728 + 69 6.71e-13 TATGACTCTT AATCATAAGGTTAGGGGTTCGAGCCCCCT ACA chrVII:185391-186070 - 42 6.71e-13 TATGACTCTT AATCATAAGGTTAGGGGTTCGAGCCCCCT ACAGGGCTAT chrVI:226524-226961 - 4 6.71e-13 TATGACTCTT AATCATAAGGTTAGGGGTTCGAGCCCCCT ACA chrV:135141-135722 - 52 6.71e-13 TATGACTCTT AATCATAAGGTTAGGGGTTCGAGCCCCCT ACAGGGCTTT chrXVI:209905-210528 - 34 1.25e-12 ATCACGCTTT CACCGTGGAGACCGGGGTTCGACTCCCCG TATCGGAGTT chrX:374196-374835 - 49 1.25e-12 TCTGACTTCT AATCAGAAGATTATGGGTTCGACCCCCAT CGTGAGTGCT chrX:355086-355735 + 49 1.25e-12 TCTGACTTCT AATCAGAAGATTATGGGTTCGACCCCCAT CGTGAGTGCT chrVII:828434-829048 - 41 1.25e-12 TCTGACTTCT AATCAGAAGATTATGGGTTCGACCCCCAT CGTGAGTGCT chrVII:541553-542202 + 58 1.25e-12 ATCACGCTTT CACCGTGGAGACCGGGGTTCGACTCCCCG TATCGGAGTG chrVII:405280-405779 + 26 1.25e-12 TCTGACTTCT AATCAGAAGATTATGGGTTCGACCCCCAT CGTGAGTGCT chrV:487075-487634 - 35 1.25e-12 ATCACGCTTT CACCGTGGAGACCGGGGTTCGACTCCCCG TATCGGAGTA chrIV:1016886-1017523 - 61 1.25e-12 ATCACGTTCT CACCGTGGAGACCGGGGTTCGACTCCCCG CTTCGGAGTT chrII:644955-645492 + 29 1.25e-12 ATCACGCTTT CACCGTGGAGACCGGGGTTCGACTCCCCG TATCGGAGTT chrII:405585-406309 + 17 1.25e-12 TCTGACTTCT AATCAGAAGATTATGGGTTCGACCCCCAT CGTGAGTGCT chrXVI:880067-880570 - 36 1.68e-12 CCGTGCTAAT AACGCGGGGATCAGCGGTTCGATCCCGCT AGAGACCATT chrXIV:602115-602577 + 54 1.68e-12 CCGTGCTAAT AACGCGGGGATCAGCGGTTCGATCCCGCT AGAGACCATT chrXIV:569607-570157 - 44 1.68e-12 CCGTGCTAAT AACGCGGGGATCAGCGGTTCGATCCCGCT AGAGACCATT chrIV:667770-668285 - 38 1.68e-12 CCGTGCTAAT AACGCGGGGATCAGCGGTTCGATCCCGCT AGAGACCATT chrXVI:571561-573072 + 37 1.31e-11 CCAACGTTGC CATCGTTGGGCCCCCGGTTCGATTCCGGG CTTGCGCAAT chrXIII:183702-184200 - 6 1.31e-11 CCAACGTTGC CATCGTTGGGCCCCCGGTTCGATTCCGGG CTTGC chrXV:853989-854439 - 32 1.69e-11 CTTCCCTTGC AAGGAAGAGGTCATCGGTTCGATTCCGGT TGCGTCCAAT chrXII:214646-215224 - 7 1.69e-11 CTTCCCTTGC AAGGAAGAGGTCATCGGTTCGATTCCGGT TGCGTC chrIV:644989-645393 - 21 2.44e-11 TTTCGGTTTT GATCCGGACAACCCCGGTTCGAATCCGGG TAGGACCTTT chrIII:168067-168632 - 10 2.44e-11 TTTCGGTTTT GATCCGGACAACCCCGGTTCGAATCCGGG TAGGACCTT chrV:130775-131425 - 41 3.92e-11 TTTCGGTTTT GATCCGAACAACCCCGGTTCGAATCCGGG TAAGACCTAT chrXV:438370-439070 + 33 4.93e-11 TAAGCAAGGA TACCGAAATGTCAGGGGTTCGAGCCCCCT ATGAGGAGTT chrXII:875249-875694 + 14 4.93e-11 TAAGCAAGGA TACCGAAATGTCAGGGGTTCGAGCCCCCT ATGAGGAGTT chrXI:578758-579316 + 38 4.93e-11 TAAGCAAGGA TACCGAAATGTCAGGGGTTCGAGCCCCCT ATGAGGAGTT chrXV:300820-301480 + 63 5.53e-11 GGGACAAAGC ATGCGAGAGGCCCTGGGTTCAATTCCCAG CTCGCCCCC chrXIV:546936-547374 + 56 5.53e-11 AAGACAAAGC ATGCGAGAGGCCCTGGGTTCAATTCCCAG CTCGCCCCGT chrVIII:388615-389263 - 13 5.53e-11 AAGACAAAGC ATGCGAGAGGCCCTGGGTTCAATTCCCAG CTCGCCCCAT chrXIV:560173-561191 - 70 1.32e-10 GT AATGTGGAGATCATCGGTTCAAATCCGAT TGGAAGCATA chrXIV:104593-105148 + 21 1.32e-10 CCACACTAGT AATGTGGAGATCATCGGTTCAAATCCGAT TGGAAGCATA chrIX:174807-175320 + 54 1.32e-10 CCACACTAGT AATGTGGAGATCATCGGTTCAAATCCGAT TGGAAGCAAT chrII:266132-266707 + 45 1.32e-10 CCACACTAGT AATGTGGAGATCATCGGTTCAAATCCGAT TGGAAGCATT chrXIII:807908-808609 - 46 2.45e-10 TTTCGGTTCT GATCCGAACAACCCCAGTTCGAATCCGGG TGGGACCTTC chrXIV:632359-632896 + 59 2.98e-10 TGCGACTGTT AATCGCAAGATCGTGAGTTCAACCCTCAC TGGGGTCGTT chrXIV:102408-103079 + 60 2.98e-10 TGCGACTGTT AATCGCAAGATCGTGAGTTCAACCCTCAC TGGGGTCGTT chrXIII:372163-372773 - 36 2.98e-10 TCTGCTTAAC ACGCAGAACGTCCCCAGTTCGATCCTGGG CGAAATCATT chrXII:975730-976309 - 22 2.98e-10 TGCGACTGTT AATCGCAAGATCGTGAGTTCAACCCTCAC TGGGGTCGTT chrXI:74440-74955 + 14 2.98e-10 TGCGACTGTT AATCGCAAGATCGTGAGTTCAACCCTCAC TGGGGTCGCT chrVIII:85022-85641 - 25 2.98e-10 TCTGCTTAAC ACGCAGAACGTCCCCAGTTCGATCCTGGG CGAAATCAAT chrVII:730916-731440 + 47 2.98e-10 TGCGACTGTT AATCGCAAGATCGTGAGTTCAACCCTCAC TGGGGTCGTT chrVI:137094-137908 - 44 2.98e-10 TGCGACTGTT AATCGCAAGATCGTGAGTTCAACCCTCAC TGGGGTCGTT chrV:469237-469772 + 40 2.98e-10 TCTGCTTAAC ACGCAGAACGTCCCCAGTTCGATCCTGGG CGAAATCATT chrX:390844-391308 - 26 3.99e-10 TCAGTCTCAT AATCTGAAGGTCGAGAGTTCGAACCTCCC CTGGAGCATA chrIV:1175518-1176179 + 67 3.99e-10 TCAGTCTCAT AATCTGAAGGTCGAGAGTTCGAACCTCCC CTGGA chrXII:374187-374687 + 5 4.39e-10 TACG AACCAGAAGATTCCAGGTTCAAGTCCTGG CGGGGAAGAT chrV:492117-492591 - 57 4.39e-10 TCTGGCTACG AACCAGAAGATTCCAGGTTCAAGTCCTGG CGGGGAAGGA chrIV:619636-620302 - 59 4.39e-10 TCTGGCTACG AACCAGAAGATTCCAGGTTCAAGTCCTGG CGGGGAAGAT chrVI:210409-210900 - 23 8.36e-10 ACCACTACGA AATCTTGAGATCGGGCGTTCGACTCGCCC CCGGGAGATA chrIV:946138-946617 + 37 8.36e-10 ATCACTACGA AATCTTGAGATCGGGCGTTCGACTCGCCC CCGGGAGATT chrXIV:374626-375197 + 62 9.14e-10 TCGGTCAAGT CATCTGGAGGTCCTGTGTTCGATCCACAG AGTTCGCAAT chrXVI:55783-56555 - 59 2.72e-09 ATAAGATTGC AATCGAAGGGTTGCAGGTTCAATTCCTGT CCGTTTCAAT chrVII:706894-707351 - 44 2.72e-09 GCAGATTGCA AATCTGTTGGTCCTTAGTTCGATCCTGAG TGCGAGCTTT chrII:642861-643262 - 4 2.72e-09 GCAGATTGCA AATCTGTTGGTCCTTAGTTCGATCCTGAG TGC chrIV:410108-410715 + 54 1.18e-08 CTCCCTTAGC ATGGGAGAGGTCTCCGGTTCGATTCCGGA CTCGTCCAAA chrXV:709952-710534 + 44 1.75e-08 CAGGGCTCAT AACCCTGATGTCCTCGGATCGAAACCGAG CGGCGCTAAT chrXII:426906-427506 + 12 2.70e-08 GGGCGCTTGT CGCGTGCCAGATCGGGGTTCAATTCCCCG TCGCGGAGAA chrIX:324007-324623 - 47 2.70e-08 GGGCGCTTGT CGCGTGCCAGATCGGGGTTCAATTCCCCG TCGCGGAGAT chrXIII:362842-363348 + 55 4.09e-08 ACATCGTTGT GGCCGATGAAACCCTGGTTCGATTCTAGG AGATGGCATT chrVIII:62461-63080 + 70 4.09e-08 ACATCGTTGT GGCCGATGAAACCCTGGTTCGATTCTAGG AG chrVII:110380-110971 - 8 4.09e-08 ACATCGTTGT GGCCGATGAAACCCTGGTTCGATTCTAGG AGATGGC chrV:207021-207730 + 67 4.09e-08 ACATCGTTGT GGCCGATGAAACCCTGGTTCGATTCTAGG AGATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAYCDKRAGRTCMBSGGTTCGABYCCSVK MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123303-123833 1.8e-13 67_[-1]_4 chrXIII:480403-480925 6.7e-13 15_[-1]_56 chrXI:202815-203326 6.7e-13 14_[+1]_57 chrX:414721-415382 6.7e-13 [+1]_71 chrVII:876095-876728 6.7e-13 68_[+1]_3 chrVII:185391-186070 6.7e-13 41_[-1]_30 chrVI:226524-226961 6.7e-13 3_[-1]_68 chrV:135141-135722 6.7e-13 51_[-1]_20 chrXVI:209905-210528 1.2e-12 33_[-1]_38 chrX:374196-374835 1.2e-12 48_[-1]_23 chrX:355086-355735 1.2e-12 48_[+1]_23 chrVII:828434-829048 1.2e-12 40_[-1]_31 chrVII:541553-542202 1.2e-12 57_[+1]_14 chrVII:405280-405779 1.2e-12 25_[+1]_46 chrV:487075-487634 1.2e-12 34_[-1]_37 chrIV:1016886-1017523 1.2e-12 60_[-1]_11 chrII:644955-645492 1.2e-12 28_[+1]_43 chrII:405585-406309 1.2e-12 16_[+1]_55 chrXVI:880067-880570 1.7e-12 35_[-1]_36 chrXIV:602115-602577 1.7e-12 53_[+1]_18 chrXIV:569607-570157 1.7e-12 43_[-1]_28 chrIV:667770-668285 1.7e-12 37_[-1]_34 chrXVI:571561-573072 1.3e-11 36_[+1]_35 chrXIII:183702-184200 1.3e-11 5_[-1]_66 chrXV:853989-854439 1.7e-11 31_[-1]_40 chrXII:214646-215224 1.7e-11 6_[-1]_65 chrIV:644989-645393 2.4e-11 20_[-1]_51 chrIII:168067-168632 2.4e-11 9_[-1]_62 chrV:130775-131425 3.9e-11 40_[-1]_31 chrXV:438370-439070 4.9e-11 32_[+1]_39 chrXII:875249-875694 4.9e-11 13_[+1]_58 chrXI:578758-579316 4.9e-11 37_[+1]_34 chrXV:300820-301480 5.5e-11 62_[+1]_9 chrXIV:546936-547374 5.5e-11 55_[+1]_16 chrVIII:388615-389263 5.5e-11 12_[-1]_59 chrXIV:560173-561191 1.3e-10 69_[-1]_2 chrXIV:104593-105148 1.3e-10 20_[+1]_51 chrIX:174807-175320 1.3e-10 53_[+1]_18 chrII:266132-266707 1.3e-10 44_[+1]_27 chrXIII:807908-808609 2.4e-10 45_[-1]_26 chrXIV:632359-632896 3e-10 58_[+1]_13 chrXIV:102408-103079 3e-10 59_[+1]_12 chrXIII:372163-372773 3e-10 35_[-1]_36 chrXII:975730-976309 3e-10 21_[-1]_50 chrXI:74440-74955 3e-10 13_[+1]_58 chrVIII:85022-85641 3e-10 24_[-1]_47 chrVII:730916-731440 3e-10 46_[+1]_25 chrVI:137094-137908 3e-10 43_[-1]_28 chrV:469237-469772 3e-10 39_[+1]_32 chrX:390844-391308 4e-10 25_[-1]_46 chrIV:1175518-1176179 4e-10 66_[+1]_5 chrXII:374187-374687 4.4e-10 4_[+1]_67 chrV:492117-492591 4.4e-10 56_[-1]_15 chrIV:619636-620302 4.4e-10 58_[-1]_13 chrVI:210409-210900 8.4e-10 22_[-1]_49 chrIV:946138-946617 8.4e-10 36_[+1]_35 chrXIV:374626-375197 9.1e-10 61_[+1]_10 chrXVI:55783-56555 2.7e-09 58_[-1]_13 chrVII:706894-707351 2.7e-09 43_[-1]_28 chrII:642861-643262 2.7e-09 3_[-1]_68 chrIV:410108-410715 1.2e-08 53_[+1]_18 chrXV:709952-710534 1.7e-08 43_[+1]_28 chrXII:426906-427506 2.7e-08 11_[+1]_60 chrIX:324007-324623 2.7e-08 46_[-1]_25 chrXIII:362842-363348 4.1e-08 54_[+1]_17 chrVIII:62461-63080 4.1e-08 69_[+1]_2 chrVII:110380-110971 4.1e-08 7_[-1]_64 chrV:207021-207730 4.1e-08 66_[+1]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAYCDKRAGRTCMBSGGTTCGABYCCSVK MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAYCDKRAGRTCMBSGGTTCGABYCCSVK width=29 seqs=68 chrIII:123303-123833 ( 68) GTGCGGGAGGTCCCGGGTTCGAGTCCCGG 1 chrXIII:480403-480925 ( 16) AATCATAAGGTTAGGGGTTCGAGCCCCCT 1 chrXI:202815-203326 ( 15) AATCATAAGGTTAGGGGTTCGAGCCCCCT 1 chrX:414721-415382 ( 1) AATCATAAGGTTAGGGGTTCGAGCCCCCT 1 chrVII:876095-876728 ( 69) AATCATAAGGTTAGGGGTTCGAGCCCCCT 1 chrVII:185391-186070 ( 42) AATCATAAGGTTAGGGGTTCGAGCCCCCT 1 chrVI:226524-226961 ( 4) AATCATAAGGTTAGGGGTTCGAGCCCCCT 1 chrV:135141-135722 ( 52) AATCATAAGGTTAGGGGTTCGAGCCCCCT 1 chrXVI:209905-210528 ( 34) CACCGTGGAGACCGGGGTTCGACTCCCCG 1 chrX:374196-374835 ( 49) AATCAGAAGATTATGGGTTCGACCCCCAT 1 chrX:355086-355735 ( 49) AATCAGAAGATTATGGGTTCGACCCCCAT 1 chrVII:828434-829048 ( 41) AATCAGAAGATTATGGGTTCGACCCCCAT 1 chrVII:541553-542202 ( 58) CACCGTGGAGACCGGGGTTCGACTCCCCG 1 chrVII:405280-405779 ( 26) AATCAGAAGATTATGGGTTCGACCCCCAT 1 chrV:487075-487634 ( 35) CACCGTGGAGACCGGGGTTCGACTCCCCG 1 chrIV:1016886-1017523 ( 61) CACCGTGGAGACCGGGGTTCGACTCCCCG 1 chrII:644955-645492 ( 29) CACCGTGGAGACCGGGGTTCGACTCCCCG 1 chrII:405585-406309 ( 17) AATCAGAAGATTATGGGTTCGACCCCCAT 1 chrXVI:880067-880570 ( 36) AACGCGGGGATCAGCGGTTCGATCCCGCT 1 chrXIV:602115-602577 ( 54) AACGCGGGGATCAGCGGTTCGATCCCGCT 1 chrXIV:569607-570157 ( 44) AACGCGGGGATCAGCGGTTCGATCCCGCT 1 chrIV:667770-668285 ( 38) AACGCGGGGATCAGCGGTTCGATCCCGCT 1 chrXVI:571561-573072 ( 37) CATCGTTGGGCCCCCGGTTCGATTCCGGG 1 chrXIII:183702-184200 ( 6) CATCGTTGGGCCCCCGGTTCGATTCCGGG 1 chrXV:853989-854439 ( 32) AAGGAAGAGGTCATCGGTTCGATTCCGGT 1 chrXII:214646-215224 ( 7) AAGGAAGAGGTCATCGGTTCGATTCCGGT 1 chrIV:644989-645393 ( 21) GATCCGGACAACCCCGGTTCGAATCCGGG 1 chrIII:168067-168632 ( 10) GATCCGGACAACCCCGGTTCGAATCCGGG 1 chrV:130775-131425 ( 41) GATCCGAACAACCCCGGTTCGAATCCGGG 1 chrXV:438370-439070 ( 33) TACCGAAATGTCAGGGGTTCGAGCCCCCT 1 chrXII:875249-875694 ( 14) TACCGAAATGTCAGGGGTTCGAGCCCCCT 1 chrXI:578758-579316 ( 38) TACCGAAATGTCAGGGGTTCGAGCCCCCT 1 chrXV:300820-301480 ( 63) ATGCGAGAGGCCCTGGGTTCAATTCCCAG 1 chrXIV:546936-547374 ( 56) ATGCGAGAGGCCCTGGGTTCAATTCCCAG 1 chrVIII:388615-389263 ( 13) ATGCGAGAGGCCCTGGGTTCAATTCCCAG 1 chrXIV:560173-561191 ( 70) AATGTGGAGATCATCGGTTCAAATCCGAT 1 chrXIV:104593-105148 ( 21) AATGTGGAGATCATCGGTTCAAATCCGAT 1 chrIX:174807-175320 ( 54) AATGTGGAGATCATCGGTTCAAATCCGAT 1 chrII:266132-266707 ( 45) AATGTGGAGATCATCGGTTCAAATCCGAT 1 chrXIII:807908-808609 ( 46) GATCCGAACAACCCCAGTTCGAATCCGGG 1 chrXIV:632359-632896 ( 59) AATCGCAAGATCGTGAGTTCAACCCTCAC 1 chrXIV:102408-103079 ( 60) AATCGCAAGATCGTGAGTTCAACCCTCAC 1 chrXIII:372163-372773 ( 36) ACGCAGAACGTCCCCAGTTCGATCCTGGG 1 chrXII:975730-976309 ( 22) AATCGCAAGATCGTGAGTTCAACCCTCAC 1 chrXI:74440-74955 ( 14) AATCGCAAGATCGTGAGTTCAACCCTCAC 1 chrVIII:85022-85641 ( 25) ACGCAGAACGTCCCCAGTTCGATCCTGGG 1 chrVII:730916-731440 ( 47) AATCGCAAGATCGTGAGTTCAACCCTCAC 1 chrVI:137094-137908 ( 44) AATCGCAAGATCGTGAGTTCAACCCTCAC 1 chrV:469237-469772 ( 40) ACGCAGAACGTCCCCAGTTCGATCCTGGG 1 chrX:390844-391308 ( 26) AATCTGAAGGTCGAGAGTTCGAACCTCCC 1 chrIV:1175518-1176179 ( 67) AATCTGAAGGTCGAGAGTTCGAACCTCCC 1 chrXII:374187-374687 ( 5) AACCAGAAGATTCCAGGTTCAAGTCCTGG 1 chrV:492117-492591 ( 57) AACCAGAAGATTCCAGGTTCAAGTCCTGG 1 chrIV:619636-620302 ( 59) AACCAGAAGATTCCAGGTTCAAGTCCTGG 1 chrVI:210409-210900 ( 23) AATCTTGAGATCGGGCGTTCGACTCGCCC 1 chrIV:946138-946617 ( 37) AATCTTGAGATCGGGCGTTCGACTCGCCC 1 chrXIV:374626-375197 ( 62) CATCTGGAGGTCCTGTGTTCGATCCACAG 1 chrXVI:55783-56555 ( 59) AATCGAAGGGTTGCAGGTTCAATTCCTGT 1 chrVII:706894-707351 ( 44) AATCTGTTGGTCCTTAGTTCGATCCTGAG 1 chrII:642861-643262 ( 4) AATCTGTTGGTCCTTAGTTCGATCCTGAG 1 chrIV:410108-410715 ( 54) ATGGGAGAGGTCTCCGGTTCGATTCCGGA 1 chrXV:709952-710534 ( 44) AACCCTGATGTCCTCGGATCGAAACCGAG 1 chrXII:426906-427506 ( 12) CGCGTGCCAGATCGGGGTTCAATTCCCCG 1 chrIX:324007-324623 ( 47) CGCGTGCCAGATCGGGGTTCAATTCCCCG 1 chrXIII:362842-363348 ( 55) GGCCGATGAAACCCTGGTTCGATTCTAGG 1 chrVIII:62461-63080 ( 70) GGCCGATGAAACCCTGGTTCGATTCTAGG 1 chrVII:110380-110971 ( 8) GGCCGATGAAACCCTGGTTCGATTCTAGG 1 chrV:207021-207730 ( 67) GGCCGATGAAACCCTGGTTCGATTCTAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAYCDKRAGRTCMBSGGTTCGABYCCSVK MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 41040 bayes= 11.2538 E= 7.1e-301 108 -30 -45 -285 132 -204 -104 -212 -1273 84 -30 73 -1273 216 8 -1273 -12 -45 108 -74 -63 -104 133 -35 56 -262 108 -144 115 -262 38 -344 -98 -81 190 -244 56 -1273 155 -1273 -53 -130 -1273 115 -1273 202 -1273 -27 20 133 -16 -444 -344 63 90 15 -244 77 159 -185 -63 -262 205 -444 -1273 -1273 247 -1273 -444 -1273 -1273 163 -1273 -1273 -1273 165 -1273 247 -1273 -1273 -19 -1273 199 -1273 165 -1273 -1273 -1273 -98 55 19 20 -444 142 -1273 65 -1273 247 -1273 -1273 -444 196 -262 -35 -244 159 90 -244 2 102 77 -1273 -444 -30 133 26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAYCDKRAGRTCMBSGGTTCGABYCCSVK MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 68 E= 7.1e-301 0.676471 0.147059 0.132353 0.044118 0.794118 0.044118 0.088235 0.073529 0.000000 0.323529 0.147059 0.529412 0.000000 0.808824 0.191176 0.000000 0.294118 0.132353 0.382353 0.191176 0.205882 0.088235 0.455882 0.250000 0.470588 0.029412 0.382353 0.117647 0.705882 0.029412 0.235294 0.029412 0.161765 0.102941 0.676471 0.058824 0.470588 0.000000 0.529412 0.000000 0.220588 0.073529 0.000000 0.705882 0.000000 0.735294 0.000000 0.264706 0.367647 0.455882 0.161765 0.014706 0.029412 0.279412 0.338235 0.352941 0.058824 0.308824 0.544118 0.088235 0.205882 0.029412 0.750000 0.014706 0.000000 0.000000 1.000000 0.000000 0.014706 0.000000 0.000000 0.985294 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.279412 0.000000 0.720588 0.000000 1.000000 0.000000 0.000000 0.000000 0.161765 0.264706 0.205882 0.367647 0.014706 0.485294 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.014706 0.705882 0.029412 0.250000 0.058824 0.544118 0.338235 0.058824 0.323529 0.367647 0.308824 0.000000 0.014706 0.147059 0.455882 0.382353 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAYCDKRAGRTCMBSGGTTCGABYCCSVK MEME-1 regular expression -------------------------------------------------------------------------------- AA[TC]C[GA][GTA][AG][AG]G[GA][TA][CT][CA][TGC][GC][GA]GTTC[GA]A[TCG][TC]C[CT][CG][CAG][GT] -------------------------------------------------------------------------------- Time 353.65 secs. ******************************************************************************** ******************************************************************************** MOTIF WGSBYNYDTGGCCBAGTBGKTWRAGS MEME-2 width = 26 sites = 68 llr = 1196 E-value = 5.9e-212 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGSBYNYDTGGCCBAGTBGKTWRAGS MEME-2 Description -------------------------------------------------------------------------------- Simplified A 5:1:2212:3:::1a1::::16651: pos.-specific C ::44334::::863::12::1::2:6 probability G :a521223:8a:23:9:4a61:4184 matrix T 5::44335a::323::93:474:11: bits 2.5 * * 2.2 * * * 2.0 * * * 1.7 * * * * * Relative 1.5 * **** ** * * Entropy 1.2 * **** *** * ** (25.4 bits) 1.0 * **** *** ** ** 0.7 ** ***** *** ** * ** 0.5 **** ***** ********* ** 0.2 **** ******************** 0.0 -------------------------- Multilevel AGGCTTCTTGGCCCAGTGGGTAAAGC consensus T CTCCTG A TTT T T TG G sequence G A A G C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBYNYDTGGCCBAGTBGKTWRAGS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------------- chrV:550992-551743 - 17 1.27e-12 CACAGATTAC AGGTCTCTTGGCCCAGTTGGTTAAGG CACCGTGCTA chrII:197136-197868 + 42 1.27e-12 CCAGTAATCA AGGTCTCTTGGCCCAGTTGGTTAAGG CACCGTGCTA chrXIV:602115-602577 + 16 1.58e-12 CAGATAACAA TGGTCTCTTGGCCCAGTTGGTTAAGG CACCGTGCTA chrV:443034-443544 - 13 1.58e-12 CATTAAAATT TGGTCTCTTGGCCCAGTTGGTTAAGG CACCGTGCTA chrIV:1304948-1306341 + 35 7.88e-12 ATACAAATTA AGGCAACTTGGCCGAGTGGTTAAGGC GAAAGATTAG chrIV:980749-981315 - 50 7.88e-12 TTGTAAATTG AGGCAACTTGGCCGAGTGGTTAAGGC GAAAGATTAG chrIV:437480-438107 + 28 7.88e-12 ATCATTAGTA AGGCAACTTGGCCGAGTGGTTAAGGC GAAAGATTAG chrI:182327-182810 - 61 9.46e-12 CATACAATTT TGGCAACTTGGCCGAGTGGTTAAGGC GAAAGATTAG chrXV:853989-854439 - 72 1.91e-11 ATC AGGGCACATGGCGCAGTTGGTAGCGC GCTTCCCTTG chrXII:214646-215224 - 47 1.91e-11 TACGCGTTTT AGGGCACATGGCGCAGTTGGTAGCGC GCTTCCCTTG chrX:197124-197670 - 15 3.66e-11 CAATAATATT AGGGCGTGTGGCGTAGTCGGTAGCGC GCTCCCTTAG chrIII:227622-228215 + 73 3.66e-11 CAAATCGAAA TGGCACTATGGCCGAGTGGTTAAGGC GA chrIV:410108-410715 + 17 4.28e-11 ATACAAATAT TGGGCGTGTGGCGTAGTCGGTAGCGC GCTCCCTTAG chrX:617742-618182 + 7 5.82e-11 AAACAA TGGGAGTTTGGCCGAGTGGTTTAAGG CGTCAGATTT chrX:58735-59582 - 40 1.05e-10 ATAAAATAGA AGCTTCTATGGCCAAGTTGGTAAGGC GCCACACTAG chrIX:174807-175320 + 17 1.05e-10 AACAAGTACG AGCTTCTATGGCCAAGTTGGTAAGGC GCCACACTAG chrII:266132-266707 + 8 1.21e-10 CAAAAAC TGCTTCTATGGCCAAGTTGGTAAGGC GCCACACTAG chrXV:487175-487730 + 36 2.09e-10 CAACAAAGTT AGACTCCATGGCCAAGTTGGTTAAGG CGTGCGACTG chrXIV:102408-103079 + 22 2.09e-10 ATATATTATA AGACTCCATGGCCAAGTTGGTTAAGG CGTGCGACTG chrXII:975730-976309 - 63 2.09e-10 CGGAAATAAA AGACTCCATGGCCAAGTTGGTTAAGG CGTGCGACTG chrXII:605131-605687 - 50 2.09e-10 CTTTCGAAAA TGCTCGTGTAGCTCAGTGGTTAGAGC TTCGTGCTTA chrVII:730916-731440 + 9 2.09e-10 AGTCAAAA AGACTCCATGGCCAAGTTGGTTAAGG CGTGCGACTG chrIV:884092-884669 + 30 2.09e-10 CTTTCGAAAA TGCTCGTGTAGCTCAGTGGTTAGAGC TTCGTGCTTA chrXIV:632359-632896 + 21 2.38e-10 GAATTTAAAG TGACTCCATGGCCAAGTTGGTTAAGG CGTGCGACTG chrIII:127507-127924 + 50 2.38e-10 CAAGATAAAA TGACTCCATGGCCAAGTTGGTTAAGG CGTGCGACTG chrXII:687613-688224 - 40 3.99e-10 CATAAATAAT AGGTTTCGTGGTCTAGTCGGTTATGG CATCTGCTTA chrXVI:581654-582469 + 50 4.52e-10 TCAACAAAAG AGCCTTGTTGGCGCAATCGGTAGCGC GTATGACTCT chrXV:663453-664356 - 7 4.52e-10 CAACAAATAG TGGTTTCGTGGTCTAGTCGGTTATGG CATCTG chrXIII:480403-480925 - 56 4.52e-10 AACAATAAGT AGCCTTGTTGGCGCAATCGGTAGCGC GTATGACTCT chrXI:308016-308427 - 22 4.52e-10 AACAATTAAG TGGTTTCGTGGTCTAGTCGGTTATGG CATCTGCTTA chrVIII:85022-85641 - 66 4.52e-10 ATAAGAATT TGGTTTCGTGGTCTAGTCGGTTATGG CATCTGCTTA chrVII:876095-876728 + 32 4.52e-10 ATAATAGAAT AGCCTTGTTGGCGCAATCGGTAGCGC GTATGACTCT chrVII:823237-823707 + 60 4.52e-10 CCAATAAGAG TGGTTTCGTGGTCTAGTCGGTTATGG CATCTGCTTA chrVII:412106-412624 - 29 4.52e-10 ATCAAAAAAC TGGTTTCGTGGTCTAGTCGGTTATGG CATCTGCTTA chrIV:1352317-1352772 - 20 4.52e-10 CCAACGAAAT AGCCTTGTTGGCGCAATCGGTAGCGC GTATGACTCT chrIV:1201314-1202137 + 74 4.52e-10 ACAAATAAAT AGCCTTGTTGGCGCAATCGGTAGCGC G chrVI:226524-226961 - 44 5.12e-10 GAGATTAAAA TGCCTTGTTGGCGCAATCGGTAGCGC GTATGACTCT chrIV:1150216-1151582 - 69 9.31e-10 TGTTTC AGTCCCAGTGGCCGAGTGGTTAAGGC GATGCCTGCT chrXIV:374626-375197 + 7 1.04e-09 AAAATA AGCGGACTTAGCTCAGTTGGGAGAGC GCCAGACTGA chrVI:191310-191880 - 45 1.04e-09 CAAGAGATTC TGTCCCAGTGGCCGAGTGGTTAAGGC GATGCCCTGC chrVII:857239-857650 - 73 1.64e-09 AG TGGTTGTTTGGCCGAGCGGTCTAAGG CGCCTGATTC chrVII:205287-205809 + 23 1.64e-09 TACAAATAAG TGGTTGTTTGGCCGAGCGGTCTAAGG CGCCTGATTC chrIV:1461478-1462177 - 28 1.64e-09 AACAAATAAG TGGTTGTTTGGCCGAGCGGTCTAAGG CGCCTGATTC chrXVI:810390-810945 + 58 1.83e-09 TCATTATTTG CGACTCCATGGCCAAGTTGGTTAAGG CGTGCGACTG chrXIII:352064-352472 + 62 2.53e-09 TATGAATATA AGCGGATTTAGCTCAGTTGGGAGAGC GCCAGACTGA chrVIII:358239-358908 - 22 2.53e-09 ACAAATAGTA AGCGGATTTAGCTCAGTTGGGAGAGC GCCAGACTGA chrVIII:237670-238213 - 24 2.53e-09 ACAAATAGTA AGCGGATTTAGCTCAGTTGGGAGAGC GCCAGACTGA chrVI:157676-158305 - 43 2.53e-09 CATAAATAGA AGCGGATTTAGCTCAGTTGGGAGAGC GCCAGACTGA chrXI:83951-84455 + 55 2.81e-09 AAAATTTGTA TGGAGGGTTGGCCGAGTGGTCTAAGG CGGCAGACTT chrX:424330-424744 - 5 2.81e-09 TTAAATAAGA TGGAGGGTTGGCCGAGTGGTCTAAGG CGGC chrII:9296-9934 + 18 2.81e-09 AGAAAATTCG TGGAGGGTTGGCCGAGTGGTCTAAGG CGGCAGACTT chrVII:700108-701308 + 17 5.73e-09 ACAGATGAAT TGGTACTCTGGCCGAGTGGTCTAAGG CGTCAGGTCG chrIV:359312-359898 + 22 8.45e-09 CGAAGAACTC ATCCTTGTTAGCTCAGTTGGTAGAGC GTTCGGCTTT chrIV:1175518-1176179 + 30 2.50e-08 TACAAAACAA AGCTTCAGTAGCTCAGTAGGAAGAGC GTCAGTCTCA chrX:390844-391308 - 66 2.72e-08 AAGAAATAG TGCTTCAGTAGCTCAGTAGGAAGAGC GTCAGTCTCA chrXV:226406-226945 - 32 1.14e-07 CAAGAAATTC AGCGCAAGTGGTTTAGTGGTAAAATC CAACGTTGCC chrX:531454-532220 + 41 1.14e-07 ACAATTAGTG AGCGCAAGTGGTTTAGTGGTAAAATC CAACGTTGCC chrXV:464186-464687 + 63 1.52e-07 CAAGTTAACA AGGGCGTGTGGTCTAGTGGTATGATT CTCGCTTTGG chrIV:1256867-1257331 - 7 2.33e-07 AGATCTTCTT AGCGAAAGTGGTTCAGTGGTTAGAAT TCATGC chrXIII:362842-363348 + 19 2.49e-07 AATCCAAGTT TGCCATCTTAGTATAGTGGTTAGTAC ACATCGTTGT chrVIII:62461-63080 + 34 2.49e-07 TAAAATCATA TGCCATCTTAGTATAGTGGTTAGTAC ACATCGTTGT chrVII:110380-110971 - 47 2.49e-07 AATAATTACC TGCCATCTTAGTATAGTGGTTAGTAC ACATCGTTGT chrIII:168067-168632 - 49 3.49e-07 CAAGAAGTCC TGGTCCTATAGTGTAGTGGTTATCAC TTTCGGTTTT chrXIII:183702-184200 - 44 3.97e-07 CAATAAAGAT CGCGCAAGTGGTTTAGTGGTAAAATC CAACGTTGCC chrII:350465-351151 + 69 2.09e-06 ATCAATAAAA GGGTTTTATAGTGTAGTGGTTATCAC TTTCGG chrXIV:631721-632150 - 8 3.36e-06 CAACTTCTAC CGGGCGTGTGGTCTAGAGGTATGATT CTCGCTT chrV:130775-131425 + 3 6.37e-05 AA ATACAAGTTAGCTGAGCGGGGGAAAA AAATAGGTCT chrV:487075-487634 + 70 6.95e-04 GGTGAAAGCG TGATGTGATAGCCGTTACACTATATC GGATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBYNYDTGGCCBAGTBGKTWRAGS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:550992-551743 1.3e-12 16_[-2]_58 chrII:197136-197868 1.3e-12 41_[+2]_33 chrXIV:602115-602577 1.6e-12 15_[+2]_59 chrV:443034-443544 1.6e-12 12_[-2]_62 chrIV:1304948-1306341 7.9e-12 34_[+2]_40 chrIV:980749-981315 7.9e-12 49_[-2]_25 chrIV:437480-438107 7.9e-12 27_[+2]_47 chrI:182327-182810 9.5e-12 60_[-2]_14 chrXV:853989-854439 1.9e-11 71_[-2]_3 chrXII:214646-215224 1.9e-11 46_[-2]_28 chrX:197124-197670 3.7e-11 14_[-2]_60 chrIII:227622-228215 3.7e-11 72_[+2]_2 chrIV:410108-410715 4.3e-11 16_[+2]_58 chrX:617742-618182 5.8e-11 6_[+2]_68 chrX:58735-59582 1e-10 39_[-2]_35 chrIX:174807-175320 1e-10 16_[+2]_58 chrII:266132-266707 1.2e-10 7_[+2]_67 chrXV:487175-487730 2.1e-10 35_[+2]_39 chrXIV:102408-103079 2.1e-10 21_[+2]_53 chrXII:975730-976309 2.1e-10 62_[-2]_12 chrXII:605131-605687 2.1e-10 49_[-2]_25 chrVII:730916-731440 2.1e-10 8_[+2]_66 chrIV:884092-884669 2.1e-10 29_[+2]_45 chrXIV:632359-632896 2.4e-10 20_[+2]_54 chrIII:127507-127924 2.4e-10 49_[+2]_25 chrXII:687613-688224 4e-10 39_[-2]_35 chrXVI:581654-582469 4.5e-10 49_[+2]_25 chrXV:663453-664356 4.5e-10 6_[-2]_68 chrXIII:480403-480925 4.5e-10 55_[-2]_19 chrXI:308016-308427 4.5e-10 21_[-2]_53 chrVIII:85022-85641 4.5e-10 65_[-2]_9 chrVII:876095-876728 4.5e-10 31_[+2]_43 chrVII:823237-823707 4.5e-10 59_[+2]_15 chrVII:412106-412624 4.5e-10 28_[-2]_46 chrIV:1352317-1352772 4.5e-10 19_[-2]_55 chrIV:1201314-1202137 4.5e-10 73_[+2]_1 chrVI:226524-226961 5.1e-10 43_[-2]_31 chrIV:1150216-1151582 9.3e-10 68_[-2]_6 chrXIV:374626-375197 1e-09 6_[+2]_68 chrVI:191310-191880 1e-09 44_[-2]_30 chrVII:857239-857650 1.6e-09 72_[-2]_2 chrVII:205287-205809 1.6e-09 22_[+2]_52 chrIV:1461478-1462177 1.6e-09 27_[-2]_47 chrXVI:810390-810945 1.8e-09 57_[+2]_17 chrXIII:352064-352472 2.5e-09 61_[+2]_13 chrVIII:358239-358908 2.5e-09 21_[-2]_53 chrVIII:237670-238213 2.5e-09 23_[-2]_51 chrVI:157676-158305 2.5e-09 42_[-2]_32 chrXI:83951-84455 2.8e-09 54_[+2]_20 chrX:424330-424744 2.8e-09 4_[-2]_70 chrII:9296-9934 2.8e-09 17_[+2]_57 chrVII:700108-701308 5.7e-09 16_[+2]_58 chrIV:359312-359898 8.4e-09 21_[+2]_53 chrIV:1175518-1176179 2.5e-08 29_[+2]_45 chrX:390844-391308 2.7e-08 65_[-2]_9 chrXV:226406-226945 1.1e-07 31_[-2]_43 chrX:531454-532220 1.1e-07 40_[+2]_34 chrXV:464186-464687 1.5e-07 62_[+2]_12 chrIV:1256867-1257331 2.3e-07 6_[-2]_68 chrXIII:362842-363348 2.5e-07 18_[+2]_56 chrVIII:62461-63080 2.5e-07 33_[+2]_41 chrVII:110380-110971 2.5e-07 46_[-2]_28 chrIII:168067-168632 3.5e-07 48_[-2]_26 chrXIII:183702-184200 4e-07 43_[-2]_31 chrII:350465-351151 2.1e-06 68_[+2]_6 chrXIV:631721-632150 3.4e-06 7_[-2]_67 chrV:130775-131425 6.4e-05 2_[+2]_72 chrV:487075-487634 0.0007 69_[+2]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBYNYDTGGCCBAGTBGKTWRAGS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGSBYNYDTGGCCBAGTBGKTWRAGS width=26 seqs=68 chrV:550992-551743 ( 17) AGGTCTCTTGGCCCAGTTGGTTAAGG 1 chrII:197136-197868 ( 42) AGGTCTCTTGGCCCAGTTGGTTAAGG 1 chrXIV:602115-602577 ( 16) TGGTCTCTTGGCCCAGTTGGTTAAGG 1 chrV:443034-443544 ( 13) TGGTCTCTTGGCCCAGTTGGTTAAGG 1 chrIV:1304948-1306341 ( 35) AGGCAACTTGGCCGAGTGGTTAAGGC 1 chrIV:980749-981315 ( 50) AGGCAACTTGGCCGAGTGGTTAAGGC 1 chrIV:437480-438107 ( 28) AGGCAACTTGGCCGAGTGGTTAAGGC 1 chrI:182327-182810 ( 61) TGGCAACTTGGCCGAGTGGTTAAGGC 1 chrXV:853989-854439 ( 72) AGGGCACATGGCGCAGTTGGTAGCGC 1 chrXII:214646-215224 ( 47) AGGGCACATGGCGCAGTTGGTAGCGC 1 chrX:197124-197670 ( 15) AGGGCGTGTGGCGTAGTCGGTAGCGC 1 chrIII:227622-228215 ( 73) TGGCACTATGGCCGAGTGGTTAAGGC 1 chrIV:410108-410715 ( 17) TGGGCGTGTGGCGTAGTCGGTAGCGC 1 chrX:617742-618182 ( 7) TGGGAGTTTGGCCGAGTGGTTTAAGG 1 chrX:58735-59582 ( 40) AGCTTCTATGGCCAAGTTGGTAAGGC 1 chrIX:174807-175320 ( 17) AGCTTCTATGGCCAAGTTGGTAAGGC 1 chrII:266132-266707 ( 8) TGCTTCTATGGCCAAGTTGGTAAGGC 1 chrXV:487175-487730 ( 36) AGACTCCATGGCCAAGTTGGTTAAGG 1 chrXIV:102408-103079 ( 22) AGACTCCATGGCCAAGTTGGTTAAGG 1 chrXII:975730-976309 ( 63) AGACTCCATGGCCAAGTTGGTTAAGG 1 chrXII:605131-605687 ( 50) TGCTCGTGTAGCTCAGTGGTTAGAGC 1 chrVII:730916-731440 ( 9) AGACTCCATGGCCAAGTTGGTTAAGG 1 chrIV:884092-884669 ( 30) TGCTCGTGTAGCTCAGTGGTTAGAGC 1 chrXIV:632359-632896 ( 21) TGACTCCATGGCCAAGTTGGTTAAGG 1 chrIII:127507-127924 ( 50) TGACTCCATGGCCAAGTTGGTTAAGG 1 chrXII:687613-688224 ( 40) AGGTTTCGTGGTCTAGTCGGTTATGG 1 chrXVI:581654-582469 ( 50) AGCCTTGTTGGCGCAATCGGTAGCGC 1 chrXV:663453-664356 ( 7) TGGTTTCGTGGTCTAGTCGGTTATGG 1 chrXIII:480403-480925 ( 56) AGCCTTGTTGGCGCAATCGGTAGCGC 1 chrXI:308016-308427 ( 22) TGGTTTCGTGGTCTAGTCGGTTATGG 1 chrVIII:85022-85641 ( 66) TGGTTTCGTGGTCTAGTCGGTTATGG 1 chrVII:876095-876728 ( 32) AGCCTTGTTGGCGCAATCGGTAGCGC 1 chrVII:823237-823707 ( 60) TGGTTTCGTGGTCTAGTCGGTTATGG 1 chrVII:412106-412624 ( 29) TGGTTTCGTGGTCTAGTCGGTTATGG 1 chrIV:1352317-1352772 ( 20) AGCCTTGTTGGCGCAATCGGTAGCGC 1 chrIV:1201314-1202137 ( 74) AGCCTTGTTGGCGCAATCGGTAGCGC 1 chrVI:226524-226961 ( 44) TGCCTTGTTGGCGCAATCGGTAGCGC 1 chrIV:1150216-1151582 ( 69) AGTCCCAGTGGCCGAGTGGTTAAGGC 1 chrXIV:374626-375197 ( 7) AGCGGACTTAGCTCAGTTGGGAGAGC 1 chrVI:191310-191880 ( 45) TGTCCCAGTGGCCGAGTGGTTAAGGC 1 chrVII:857239-857650 ( 73) TGGTTGTTTGGCCGAGCGGTCTAAGG 1 chrVII:205287-205809 ( 23) TGGTTGTTTGGCCGAGCGGTCTAAGG 1 chrIV:1461478-1462177 ( 28) TGGTTGTTTGGCCGAGCGGTCTAAGG 1 chrXVI:810390-810945 ( 58) CGACTCCATGGCCAAGTTGGTTAAGG 1 chrXIII:352064-352472 ( 62) AGCGGATTTAGCTCAGTTGGGAGAGC 1 chrVIII:358239-358908 ( 22) AGCGGATTTAGCTCAGTTGGGAGAGC 1 chrVIII:237670-238213 ( 24) AGCGGATTTAGCTCAGTTGGGAGAGC 1 chrVI:157676-158305 ( 43) AGCGGATTTAGCTCAGTTGGGAGAGC 1 chrXI:83951-84455 ( 55) TGGAGGGTTGGCCGAGTGGTCTAAGG 1 chrX:424330-424744 ( 5) TGGAGGGTTGGCCGAGTGGTCTAAGG 1 chrII:9296-9934 ( 18) TGGAGGGTTGGCCGAGTGGTCTAAGG 1 chrVII:700108-701308 ( 17) TGGTACTCTGGCCGAGTGGTCTAAGG 1 chrIV:359312-359898 ( 22) ATCCTTGTTAGCTCAGTTGGTAGAGC 1 chrIV:1175518-1176179 ( 30) AGCTTCAGTAGCTCAGTAGGAAGAGC 1 chrX:390844-391308 ( 66) TGCTTCAGTAGCTCAGTAGGAAGAGC 1 chrXV:226406-226945 ( 32) AGCGCAAGTGGTTTAGTGGTAAAATC 1 chrX:531454-532220 ( 41) AGCGCAAGTGGTTTAGTGGTAAAATC 1 chrXV:464186-464687 ( 63) AGGGCGTGTGGTCTAGTGGTATGATT 1 chrIV:1256867-1257331 ( 7) AGCGAAAGTGGTTCAGTGGTTAGAAT 1 chrXIII:362842-363348 ( 19) TGCCATCTTAGTATAGTGGTTAGTAC 1 chrVIII:62461-63080 ( 34) TGCCATCTTAGTATAGTGGTTAGTAC 1 chrVII:110380-110971 ( 47) TGCCATCTTAGTATAGTGGTTAGTAC 1 chrIII:168067-168632 ( 49) TGGTCCTATAGTGTAGTGGTTATCAC 1 chrXIII:183702-184200 ( 44) CGCGCAAGTGGTTTAGTGGTAAAATC 1 chrII:350465-351151 ( 69) GGGTTTTATAGTGTAGTGGTTATCAC 1 chrXIV:631721-632150 ( 8) CGGGCGTGTGGTCTAGAGGTATGATT 1 chrV:130775-131425 ( 3) ATACAAGTTAGCTGAGCGGGGGAAAA 1 chrV:487075-487634 ( 70) TGATGTGATAGCCGTTACACTATATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBYNYDTGGCCBAGTBGKTWRAGS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 26 n= 42750 bayes= 6.49241 E= 5.9e-212 60 -204 -362 51 -1273 -1273 242 -344 -127 108 133 -344 -285 102 38 15 -85 55 -45 42 -44 47 8 2 -144 113 -4 -5 -44 -362 70 51 -1273 -1273 -1273 165 -35 -1273 205 -1273 -1273 -1273 247 -1273 -1273 205 -1273 -35 -285 163 -4 -53 -112 90 47 -27 163 -1273 -1273 -444 -185 -1273 231 -444 -344 -162 -1273 151 -344 29 124 2 -444 -1273 245 -1273 -1273 -362 166 37 -163 -81 -104 115 88 -1273 -362 32 85 -1273 108 -285 77 -4 -30 -127 -163 -1273 216 -185 -444 166 102 -285 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBYNYDTGGCCBAGTBGKTWRAGS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 26 nsites= 68 E= 5.9e-212 0.485294 0.044118 0.014706 0.455882 0.000000 0.000000 0.970588 0.029412 0.132353 0.382353 0.455882 0.029412 0.044118 0.367647 0.235294 0.352941 0.176471 0.264706 0.132353 0.426471 0.235294 0.250000 0.191176 0.323529 0.117647 0.397059 0.176471 0.308824 0.235294 0.014706 0.294118 0.455882 0.000000 0.000000 0.000000 1.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.044118 0.558824 0.176471 0.220588 0.147059 0.338235 0.250000 0.264706 0.985294 0.000000 0.000000 0.014706 0.088235 0.000000 0.897059 0.014706 0.029412 0.058824 0.000000 0.911765 0.029412 0.220588 0.426471 0.323529 0.014706 0.000000 0.985294 0.000000 0.000000 0.014706 0.573529 0.411765 0.102941 0.102941 0.088235 0.705882 0.588235 0.000000 0.014706 0.397059 0.573529 0.000000 0.382353 0.044118 0.544118 0.176471 0.147059 0.132353 0.102941 0.000000 0.808824 0.088235 0.014706 0.573529 0.367647 0.044118 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBYNYDTGGCCBAGTBGKTWRAGS MEME-2 regular expression -------------------------------------------------------------------------------- [AT]G[GC][CTG][TC][TCA][CT][TGA]T[GA]G[CT][CT][CTG]AGT[GTC]G[GT]T[AT][AG]AG[CG] -------------------------------------------------------------------------------- Time 1205.58 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGRTGTRTGGGTG MEME-3 width = 15 sites = 51 llr = 644 E-value = 1.6e-055 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGRTGTRTGGGTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 11124:::5:::2:: pos.-specific C 122::::313:::1: probability G 262661a:3:9a8:9 matrix T 7:51:9:7171::91 bits 2.5 * 2.2 * * 2.0 * ** 1.7 * ** * Relative 1.5 * *** * Entropy 1.2 *** ***** (18.2 bits) 1.0 * **** ****** 0.7 * ***** ****** 0.5 ** ***** ****** 0.2 *************** 0.0 --------------- Multilevel TGTGGTGTATGGGTG consensus CGAA CGC A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGRTGTRTGGGTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chrXIII:5313-5736 - 70 2.20e-10 TGGGTGTGGG TGTGGTGTGTGGGTG TGGGTGTATA chrXII:5471-5921 - 22 2.20e-10 GTGGTGTGGG TGTGGTGTGTGGGTG TGGTGTATAT chrVIII:562279-562580 + 84 2.20e-10 AAAGTGTGGG TGTGGTGTGTGGGTG TG chrVI:4473-5117 - 55 2.20e-10 AGGGTGTGGG TGTGGTGTGTGGGTG TGGGTGTGGT chrIX:2-205 - 1 2.20e-10 TTGGTGTGGG TGTGGTGTGTGGGTG chrIV:28-325 - 12 2.20e-10 AGGGGTAGTG TGTGGTGTGTGGGTG TGGGTGTGGT chrVI:95484-95825 + 29 7.46e-09 CTATACGCAG TCCGGTGTGTGGGTG CATGACTGAT chrIV:1062719-1063147 + 72 7.46e-09 CCTGCCATCA TGCGATGTGTGGGTG CTATTTATTT chrVII:371264-371460 - 45 1.50e-08 TGCGGCGGTG TGAGGTGCATGGGTG CCGGTATTTT chrIV:525062-525377 + 31 2.06e-08 ATATTTTTGG TGTAGTGTATGGGTG TTGTGAAAAT chrV:110067-111375 - 9 2.88e-08 TGTTGTCTAT TGAGGTGTCTGGGTG TGTTTGTC chrXV:968129-968410 + 47 4.53e-08 CTCAAAAGCG TGGGGTGCGTGGGCG TGCGCTGCTC chrVII:856763-856951 + 55 5.12e-08 GTTCCATTGG TGCGGTGTATGGGCG GGTACCCTCA chrIV:539011-539209 - 47 6.68e-08 AAGGATTGAA TGAGGGGTGTGGGTG TGATAATTCA chrII:181315-181677 - 51 7.81e-08 ATGTATTCAA TGTAATGTATGGGTG CTTTGTAAAG chrXIII:302876-303129 + 10 1.69e-07 ATCCAGGGG TGTGGGGTGTGGGCG CCCATATGCG chrX:160007-160317 - 64 2.38e-07 CGTGCAACAT TATGGGGTATGGGTG TGTCACACAT chrXIV:499009-499780 + 86 2.68e-07 TGTAAACTCA TGTGGTGCACTGGTG chrXI:382195-382420 - 49 3.01e-07 TTGTGTTGGG TGTGATGTCCGGATG CAACAGCAGC chrVIII:175077-175358 - 76 3.77e-07 GAAGACTGGG TGTGATGCGGGGGTG GGGGTGTGCA chrXVI:866445-866763 + 32 4.18e-07 TTCACAGAGG TTTGGTGTATGGGTG TATTTCCGTT chrXII:370558-370942 + 84 4.18e-07 GGACTAACCG TGTGGTTCATGGGTG GG chrVII:773970-775030 + 61 4.63e-07 CGGACCCTGG TGCAAGGTGTGGGTG CTGAGACAAA chrIV:411240-411652 - 41 4.63e-07 ACTTTGGGTG CCCGGGGTGTGGGTG TTTGATTTGT chrVIII:296890-297281 - 23 5.67e-07 GAGAGCATGC TGTGATGTACTGGTG GACGAAATTG chrI:81890-82271 + 77 6.92e-07 CTCATCTAGC GGAGGTGCACGGATG TACCAACAG chrXV:216252-216681 - 60 7.68e-07 GTTACCTGGG GGCGGTGCCTGGGTT GAGGAAGGCG chrIX:254235-254536 + 20 7.68e-07 GCGCGGCAAT TAGAATGTGTGGGTG CGGAAGCTCG chrXVI:699915-700677 - 16 1.13e-06 AAATTTAGTA TGCTGTGCTTGGGTG TTTTGAAGTG chrVII:1000377-1000587 - 28 1.24e-06 GTCCAAATAT GCAGGTGTTTGGGTG CTATCCTAGT chrXI:67744-68045 - 70 1.35e-06 GAAAATTTGA TGCGGTGCACGGATT TCAGCACGGG chrIV:358108-358466 + 10 1.77e-06 TCCTTGTCA GATAATGTATGGGTG GTGTGTACAC chrXIII:433524-433789 - 82 1.93e-06 TTTA GCAAATGCGTGGGTG CGTTTCAAAG chrX:90052-90453 - 60 1.93e-06 AAAAAAACAA GGCCATGTATGGGTG AGAATGTCCA chrXVI:378674-379038 + 32 2.29e-06 CAATGAGAAC TCGAATGTACGGATG TTTTCTCTGA chrVII:277011-277398 - 74 2.29e-06 ATCCCATAGA GCGGGTGTATGGGTC TAGCTTAAAT chrXV:253489-254340 - 84 2.48e-06 AA TGTTATGTCTGGGCG TATAGTCCCG chrXII:932064-932525 + 20 3.41e-06 GTACAGATGT ACGGATGTACGGATG TACGGATGTA chrVII:700108-701308 + 67 3.69e-06 CCTGATCTCT TCGGAGGCGCGGGTT CAAACCCCGC chrVII:345856-346572 + 23 4.00e-06 GGGTTTACCT TCGTGTGCCCGGATG AGGACCGTTG chrIII:58726-58988 - 66 4.00e-06 ATTTTTCAGA AATGGTGCACGGATG TACCCACGCA chrII:415477-415941 + 6 4.00e-06 AAATG CGTAATGTCTGGATG ACAAAATGCA chrXVI:135447-135877 + 12 4.67e-06 GCATACTTTA CGGGGTGCACGGATT TTAGCAGTCT chrII:44961-45350 - 66 5.40e-06 CAAACATACA TAGAATGTACGGATG CATGATTGTC chrXVI:188615-189019 - 25 5.79e-06 AACCATAGTA ACCGATGCATGGGTT TTAAAAGTCA chrXIII:145804-146525 - 1 5.79e-06 TTCATAAAAA TATAGTGTACTGGTG chrIV:1355691-1356065 + 33 5.79e-06 GTAATTTTAA CCGAATGTATGGATG TTACAGGGAG chrVII:648835-649493 + 18 6.68e-06 TATTAAAAAA AGTAATGTATGGGTT CTCGTTGTAC chrIX:316112-317421 - 24 7.18e-06 TCAATAACTT TGTGGTTTCTTGGTG AGTTTATGAC chrXV:505072-505515 - 77 8.26e-06 AATACCATA TCATATGTTTGGGTG TGATAAGGTT chrVII:788298-788800 + 28 1.87e-05 ATTGGGTTTA GAGTATGCACGGATG TTGTAAGGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGRTGTRTGGGTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:5313-5736 2.2e-10 69_[-3]_16 chrXII:5471-5921 2.2e-10 21_[-3]_64 chrVIII:562279-562580 2.2e-10 83_[+3]_2 chrVI:4473-5117 2.2e-10 54_[-3]_31 chrIX:2-205 2.2e-10 [-3]_85 chrIV:28-325 2.2e-10 11_[-3]_74 chrVI:95484-95825 7.5e-09 28_[+3]_57 chrIV:1062719-1063147 7.5e-09 71_[+3]_14 chrVII:371264-371460 1.5e-08 44_[-3]_41 chrIV:525062-525377 2.1e-08 30_[+3]_55 chrV:110067-111375 2.9e-08 8_[-3]_77 chrXV:968129-968410 4.5e-08 46_[+3]_39 chrVII:856763-856951 5.1e-08 54_[+3]_31 chrIV:539011-539209 6.7e-08 46_[-3]_39 chrII:181315-181677 7.8e-08 50_[-3]_35 chrXIII:302876-303129 1.7e-07 9_[+3]_76 chrX:160007-160317 2.4e-07 63_[-3]_22 chrXIV:499009-499780 2.7e-07 85_[+3] chrXI:382195-382420 3e-07 48_[-3]_37 chrVIII:175077-175358 3.8e-07 75_[-3]_10 chrXVI:866445-866763 4.2e-07 31_[+3]_54 chrXII:370558-370942 4.2e-07 83_[+3]_2 chrVII:773970-775030 4.6e-07 60_[+3]_25 chrIV:411240-411652 4.6e-07 40_[-3]_45 chrVIII:296890-297281 5.7e-07 22_[-3]_63 chrI:81890-82271 6.9e-07 76_[+3]_9 chrXV:216252-216681 7.7e-07 59_[-3]_26 chrIX:254235-254536 7.7e-07 19_[+3]_66 chrXVI:699915-700677 1.1e-06 15_[-3]_70 chrVII:1000377-1000587 1.2e-06 27_[-3]_58 chrXI:67744-68045 1.4e-06 69_[-3]_16 chrIV:358108-358466 1.8e-06 9_[+3]_76 chrXIII:433524-433789 1.9e-06 81_[-3]_4 chrX:90052-90453 1.9e-06 59_[-3]_26 chrXVI:378674-379038 2.3e-06 31_[+3]_54 chrVII:277011-277398 2.3e-06 73_[-3]_12 chrXV:253489-254340 2.5e-06 83_[-3]_2 chrXII:932064-932525 3.4e-06 19_[+3]_66 chrVII:700108-701308 3.7e-06 66_[+3]_19 chrVII:345856-346572 4e-06 22_[+3]_63 chrIII:58726-58988 4e-06 65_[-3]_20 chrII:415477-415941 4e-06 5_[+3]_80 chrXVI:135447-135877 4.7e-06 11_[+3]_74 chrII:44961-45350 5.4e-06 65_[-3]_20 chrXVI:188615-189019 5.8e-06 24_[-3]_61 chrXIII:145804-146525 5.8e-06 [-3]_85 chrIV:1355691-1356065 5.8e-06 32_[+3]_53 chrVII:648835-649493 6.7e-06 17_[+3]_68 chrIX:316112-317421 7.2e-06 23_[-3]_62 chrXV:505072-505515 8.3e-06 76_[-3]_9 chrVII:788298-788800 1.9e-05 27_[+3]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGRTGTRTGGGTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGRTGTRTGGGTG width=15 seqs=51 chrXIII:5313-5736 ( 70) TGTGGTGTGTGGGTG 1 chrXII:5471-5921 ( 22) TGTGGTGTGTGGGTG 1 chrVIII:562279-562580 ( 84) TGTGGTGTGTGGGTG 1 chrVI:4473-5117 ( 55) TGTGGTGTGTGGGTG 1 chrIX:2-205 ( 1) TGTGGTGTGTGGGTG 1 chrIV:28-325 ( 12) TGTGGTGTGTGGGTG 1 chrVI:95484-95825 ( 29) TCCGGTGTGTGGGTG 1 chrIV:1062719-1063147 ( 72) TGCGATGTGTGGGTG 1 chrVII:371264-371460 ( 45) TGAGGTGCATGGGTG 1 chrIV:525062-525377 ( 31) TGTAGTGTATGGGTG 1 chrV:110067-111375 ( 9) TGAGGTGTCTGGGTG 1 chrXV:968129-968410 ( 47) TGGGGTGCGTGGGCG 1 chrVII:856763-856951 ( 55) TGCGGTGTATGGGCG 1 chrIV:539011-539209 ( 47) TGAGGGGTGTGGGTG 1 chrII:181315-181677 ( 51) TGTAATGTATGGGTG 1 chrXIII:302876-303129 ( 10) TGTGGGGTGTGGGCG 1 chrX:160007-160317 ( 64) TATGGGGTATGGGTG 1 chrXIV:499009-499780 ( 86) TGTGGTGCACTGGTG 1 chrXI:382195-382420 ( 49) TGTGATGTCCGGATG 1 chrVIII:175077-175358 ( 76) TGTGATGCGGGGGTG 1 chrXVI:866445-866763 ( 32) TTTGGTGTATGGGTG 1 chrXII:370558-370942 ( 84) TGTGGTTCATGGGTG 1 chrVII:773970-775030 ( 61) TGCAAGGTGTGGGTG 1 chrIV:411240-411652 ( 41) CCCGGGGTGTGGGTG 1 chrVIII:296890-297281 ( 23) TGTGATGTACTGGTG 1 chrI:81890-82271 ( 77) GGAGGTGCACGGATG 1 chrXV:216252-216681 ( 60) GGCGGTGCCTGGGTT 1 chrIX:254235-254536 ( 20) TAGAATGTGTGGGTG 1 chrXVI:699915-700677 ( 16) TGCTGTGCTTGGGTG 1 chrVII:1000377-1000587 ( 28) GCAGGTGTTTGGGTG 1 chrXI:67744-68045 ( 70) TGCGGTGCACGGATT 1 chrIV:358108-358466 ( 10) GATAATGTATGGGTG 1 chrXIII:433524-433789 ( 82) GCAAATGCGTGGGTG 1 chrX:90052-90453 ( 60) GGCCATGTATGGGTG 1 chrXVI:378674-379038 ( 32) TCGAATGTACGGATG 1 chrVII:277011-277398 ( 74) GCGGGTGTATGGGTC 1 chrXV:253489-254340 ( 84) TGTTATGTCTGGGCG 1 chrXII:932064-932525 ( 20) ACGGATGTACGGATG 1 chrVII:700108-701308 ( 67) TCGGAGGCGCGGGTT 1 chrVII:345856-346572 ( 23) TCGTGTGCCCGGATG 1 chrIII:58726-58988 ( 66) AATGGTGCACGGATG 1 chrII:415477-415941 ( 6) CGTAATGTCTGGATG 1 chrXVI:135447-135877 ( 12) CGGGGTGCACGGATT 1 chrII:44961-45350 ( 66) TAGAATGTACGGATG 1 chrXVI:188615-189019 ( 25) ACCGATGCATGGGTT 1 chrXIII:145804-146525 ( 1) TATAGTGTACTGGTG 1 chrIV:1355691-1356065 ( 33) CCGAATGTATGGATG 1 chrVII:648835-649493 ( 18) AGTAATGTATGGGTT 1 chrIX:316112-317421 ( 24) TGTGGTTTCTTGGTG 1 chrXV:505072-505515 ( 77) TCATATGTTTGGGTG 1 chrVII:788298-788800 ( 28) GAGTATGCACGGATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGRTGTRTGGGTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 49020 bayes= 11.0568 E= 1.6e-055 -202 -121 -21 110 -122 38 175 -402 -122 12 25 50 -44 -320 184 -170 37 -1232 170 -1232 -1232 -1232 -62 147 -1232 -1232 241 -302 -1232 79 -1232 110 56 -40 88 -244 -1232 60 -320 115 -1232 -1232 235 -202 -1232 -1232 247 -1232 -44 -1232 208 -1232 -1232 -121 -1232 153 -1232 -320 225 -144 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGRTGTRTGGGTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 51 E= 1.6e-055 0.078431 0.078431 0.156863 0.686275 0.137255 0.235294 0.607843 0.019608 0.137255 0.196078 0.215686 0.450980 0.235294 0.019608 0.647059 0.098039 0.411765 0.000000 0.588235 0.000000 0.000000 0.000000 0.117647 0.882353 0.000000 0.000000 0.960784 0.039216 0.000000 0.313725 0.000000 0.686275 0.470588 0.137255 0.333333 0.058824 0.000000 0.274510 0.019608 0.705882 0.000000 0.000000 0.921569 0.078431 0.000000 0.000000 1.000000 0.000000 0.235294 0.000000 0.764706 0.000000 0.000000 0.078431 0.000000 0.921569 0.000000 0.019608 0.862745 0.117647 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGRTGTRTGGGTG MEME-3 regular expression -------------------------------------------------------------------------------- T[GC][TG][GA][GA]TG[TC][AG][TC]GG[GA]TG -------------------------------------------------------------------------------- Time 2059.24 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:7-1377 9.37e-01 100 chrI:81890-82271 2.32e-03 55_[-3(1.22e-05)]_6_[+3(6.92e-07)]_\ 9 chrI:138854-139395 3.92e-01 100 chrI:141721-143705 1.60e-01 100 chrI:166006-166809 8.40e-01 100 chrI:180903-181517 4.28e-01 100 chrI:182327-182810 1.65e-08 60_[-2(9.46e-12)]_14 chrI:229231-230193 2.23e-01 100 chrII:6044-7131 4.23e-01 100 chrII:9296-9934 2.31e-07 17_[+2(2.81e-09)]_22_[+1(6.18e-05)]_\ 6 chrII:36134-36569 5.32e-01 100 chrII:44961-45350 1.14e-02 65_[-3(5.40e-06)]_20 chrII:60086-61340 9.53e-01 100 chrII:87964-88555 9.22e-01 100 chrII:88971-89998 7.47e-01 100 chrII:164649-164897 6.74e-01 100 chrII:165058-165692 5.52e-01 100 chrII:167650-169698 7.48e-01 100 chrII:181315-181677 7.92e-04 50_[-3(7.81e-08)]_35 chrII:197136-197868 1.36e-08 41_[+2(1.27e-12)]_33 chrII:226824-227683 7.76e-01 100 chrII:254777-255790 8.20e-01 100 chrII:266132-266707 8.95e-14 7_[+2(1.21e-10)]_11_[+1(1.32e-10)]_\ 27 chrII:301164-301584 2.93e-01 100 chrII:326581-327610 3.23e-01 100 chrII:332215-333446 1.56e-01 100 chrII:347372-348139 2.36e-01 100 chrII:350465-351151 2.26e-04 68_[+2(2.09e-06)]_6 chrII:405585-406309 7.56e-11 16_[+1(1.25e-12)]_17_[+2(2.77e-05)]_\ 12 chrII:415477-415941 9.82e-03 5_[+3(4.00e-06)]_1_[+3(8.84e-06)]_\ 64 chrII:476828-477786 8.21e-01 100 chrII:478964-479461 9.75e-01 100 chrII:479649-479892 4.22e-01 100 chrII:556081-558470 2.29e-01 100 chrII:592351-593457 8.12e-02 100 chrII:604090-607612 5.38e-01 100 chrII:642861-643262 1.77e-06 3_[-1(2.72e-09)]_68 chrII:644955-645492 1.27e-08 28_[+1(1.25e-12)]_43 chrII:680934-682212 6.66e-01 100 chrIII:2-1645 1.47e-02 26_[-2(6.14e-05)]_48 chrIII:11069-11549 8.66e-01 100 chrIII:13981-16629 9.97e-01 100 chrIII:28867-31938 8.00e-01 100 chrIII:58726-58988 8.42e-03 65_[-3(4.00e-06)]_20 chrIII:81980-82788 8.60e-01 100 chrIII:123303-123833 1.60e-11 67_[-1(1.77e-13)]_4 chrIII:127507-127924 4.80e-06 49_[+2(2.38e-10)]_25 chrIII:142173-143114 9.08e-01 100 chrIII:147728-148201 3.37e-02 100 chrIII:161727-163908 6.69e-01 100 chrIII:168067-168632 1.67e-12 9_[-1(2.44e-11)]_10_[-2(3.49e-07)]_\ 26 chrIII:177032-179277 9.83e-01 100 chrIII:227622-228215 1.57e-08 72_[+2(3.66e-11)]_2 chrIII:292287-293093 5.11e-01 100 chrIII:293644-294419 9.76e-01 100 chrIII:294590-295934 5.98e-01 100 chrIII:296167-296375 7.60e-01 100 chrIII:316218-316618 1.68e-01 100 chrIV:28-325 4.28e-07 11_[-3(2.20e-10)]_74 chrIV:83230-83805 1.84e-02 100 chrIV:116862-118232 2.19e-01 100 chrIV:129455-131003 5.44e-01 100 chrIV:217027-218081 2.66e-02 43_[+2(4.57e-05)]_31 chrIV:221038-222374 9.68e-01 100 chrIV:229449-230688 9.31e-01 100 chrIV:307973-309778 1.51e-01 100 chrIV:321687-323602 8.36e-01 100 chrIV:340181-341628 9.58e-01 100 chrIV:355120-356933 1.56e-02 100 chrIV:358108-358466 8.62e-03 9_[+3(1.77e-06)]_76 chrIV:359312-359898 3.94e-05 21_[+2(8.45e-09)]_3_[+2(6.14e-05)]_\ 24 chrIV:410108-410715 3.37e-12 16_[+2(4.28e-11)]_11_[+1(1.18e-08)]_\ 18 chrIV:411240-411652 1.54e-05 40_[-3(4.63e-07)]_9_[-2(3.64e-05)]_\ 10 chrIV:433979-435095 5.80e-01 100 chrIV:437480-438107 9.64e-08 27_[+2(7.88e-12)]_47 chrIV:488415-489138 1.04e-01 67_[+1(8.13e-05)]_4 chrIV:490444-491898 2.70e-01 100 chrIV:519495-520297 1.00e+00 100 chrIV:520458-521300 8.64e-01 100 chrIV:525062-525377 1.25e-04 30_[+3(2.06e-08)]_55 chrIV:539011-539209 4.13e-05 46_[-3(6.68e-08)]_39 chrIV:540954-542089 6.04e-01 100 chrIV:555378-555874 8.54e-01 100 chrIV:568536-569220 2.52e-01 100 chrIV:579010-581059 8.37e-01 100 chrIV:619636-620302 1.27e-06 58_[-1(4.39e-10)]_13 chrIV:644989-645393 4.53e-12 20_[-1(2.44e-11)]_10_[-2(1.01e-06)]_\ 15 chrIV:667770-668285 2.00e-08 37_[-1(1.68e-12)]_34 chrIV:802120-803048 1.96e-01 100 chrIV:835786-836307 3.70e-01 100 chrIV:884092-884669 1.28e-07 29_[+2(2.09e-10)]_45 chrIV:915367-915560 7.03e-01 100 chrIV:915821-916271 8.87e-01 100 chrIV:946138-946617 7.61e-06 36_[+1(8.36e-10)]_35 chrIV:980749-981315 1.40e-08 49_[-2(7.88e-12)]_25 chrIV:992549-993090 7.69e-05 61_[+2(1.14e-07)]_13 chrIV:1013063-1013930 8.00e-01 100 chrIV:1016886-1017523 2.14e-08 60_[-1(1.25e-12)]_11 chrIV:1062719-1063147 1.12e-04 71_[+3(7.46e-09)]_14 chrIV:1075227-1075836 8.70e-03 38_[-2(2.99e-05)]_36 chrIV:1094931-1095781 1.29e-01 100 chrIV:1150216-1151582 1.28e-06 68_[-2(9.31e-10)]_6 chrIV:1175518-1176179 3.33e-11 29_[+2(2.50e-08)]_11_[+1(3.99e-10)]_\ 5 chrIV:1201314-1202137 3.08e-06 73_[+2(4.52e-10)]_1 chrIV:1236814-1238479 8.68e-01 100 chrIV:1256867-1257331 8.55e-05 6_[-2(2.33e-07)]_68 chrIV:1300272-1301346 4.56e-01 100 chrIV:1304948-1306341 2.64e-08 34_[+2(7.88e-12)]_40 chrIV:1352317-1352772 3.56e-06 19_[-2(4.52e-10)]_55 chrIV:1352989-1353167 5.16e-01 100 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******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************