Invoking:
  getsize aa_memeout/aa_peaks.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.015042
Invoking:
  fasta-most -min 50 < aa_memeout/aa_peaks.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.064771
Invoking:
  fasta-center -dna -len 100 < aa_memeout/aa_peaks.fa 1> aa_memeout/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.080244
Invoking:
  fasta-shuffle-letters aa_memeout/seqs-centered aa_memeout/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.012632
Invoking:
  fasta-subsample aa_memeout/seqs-centered 600 -rest aa_memeout/seqs-discarded -seed 1 1> aa_memeout/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.068028
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 aa_memeout/aa_peaks.fa aa_memeout/background
Finished invoke:
  name: bg  status: 0  time: 0.008204
Invoking:
  meme aa_memeout/seqs-sampled -oc aa_memeout/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile aa_memeout/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 1086.257139
Invoking:
  dreme -v 1 -oc aa_memeout/dreme_out -png -dna -p aa_memeout/seqs-centered -n aa_memeout/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 120.75773
Invoking:
  centrimo -seqlen 344 -verbosity 1 -oc aa_memeout/centrimo_out -bfile aa_memeout/background aa_memeout/aa_peaks.fa aa_memeout/meme_out/meme.xml aa_memeout/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.216754
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 aa_memeout/combined.meme aa_memeout/combined.meme 1> aa_memeout/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.474509
Invoking:
  spamo -verbosity 1 -oc aa_memeout/spamo_out_1 -bgfile aa_memeout/background -primary MCCACTRSRCCAMRNRVSCW aa_memeout/aa_peaks.fa aa_memeout/meme_out/meme.xml aa_memeout/meme_out/meme.xml aa_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.826638
Invoking:
  spamo -verbosity 1 -oc aa_memeout/spamo_out_2 -bgfile aa_memeout/background -primary GGRRTCGAACCSVKGAYCTYHYGRTTAMWA aa_memeout/aa_peaks.fa aa_memeout/meme_out/meme.xml aa_memeout/meme_out/meme.xml aa_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.668234
Invoking:
  spamo -verbosity 1 -oc aa_memeout/spamo_out_3 -bgfile aa_memeout/background -primary WACAYCCRTACAYY aa_memeout/aa_peaks.fa aa_memeout/meme_out/meme.xml aa_memeout/meme_out/meme.xml aa_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.543582
Invoking:
  spamo -verbosity 1 -oc aa_memeout/spamo_out_4 -bgfile aa_memeout/background -primary CAACTKGG aa_memeout/aa_peaks.fa aa_memeout/dreme_out/dreme.xml aa_memeout/meme_out/meme.xml aa_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.381625
Invoking:
  spamo -verbosity 1 -oc aa_memeout/spamo_out_5 -bgfile aa_memeout/background -primary GCKCTACC aa_memeout/aa_peaks.fa aa_memeout/dreme_out/dreme.xml aa_memeout/meme_out/meme.xml aa_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.333891
Invoking:
  spamo -verbosity 1 -oc aa_memeout/spamo_out_6 -bgfile aa_memeout/background -primary AAGGCGM aa_memeout/aa_peaks.fa aa_memeout/dreme_out/dreme.xml aa_memeout/meme_out/meme.xml aa_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.411472
Invoking:
  spamo -verbosity 1 -oc aa_memeout/spamo_out_7 -bgfile aa_memeout/background -primary AGRAAA aa_memeout/aa_peaks.fa aa_memeout/dreme_out/dreme.xml aa_memeout/meme_out/meme.xml aa_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.64866
Invoking:
  spamo -verbosity 1 -oc aa_memeout/spamo_out_8 -bgfile aa_memeout/background -primary GCCWTAAC aa_memeout/aa_peaks.fa aa_memeout/dreme_out/dreme.xml aa_memeout/meme_out/meme.xml aa_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.30733
Invoking:
  spamo -verbosity 1 -oc aa_memeout/spamo_out_9 -bgfile aa_memeout/background -primary GTGATAGY aa_memeout/aa_peaks.fa aa_memeout/dreme_out/dreme.xml aa_memeout/meme_out/meme.xml aa_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.27565
Invoking:
  spamo -verbosity 1 -oc aa_memeout/spamo_out_10 -bgfile aa_memeout/background -primary TCTCCACR aa_memeout/aa_peaks.fa aa_memeout/dreme_out/dreme.xml aa_memeout/meme_out/meme.xml aa_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.301594
Invoking:
  spamo -verbosity 1 -oc aa_memeout/spamo_out_11 -bgfile aa_memeout/background -primary CTWGACC aa_memeout/aa_peaks.fa aa_memeout/dreme_out/dreme.xml aa_memeout/meme_out/meme.xml aa_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.341719
Invoking:
  spamo -verbosity 1 -oc aa_memeout/spamo_out_12 -bgfile aa_memeout/background -primary CATATATW aa_memeout/aa_peaks.fa aa_memeout/dreme_out/dreme.xml aa_memeout/meme_out/meme.xml aa_memeout/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.345752
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc aa_memeout/fimo_out_1 --bgfile aa_memeout/background --motif MCCACTRSRCCAMRNRVSCW aa_memeout/meme_out/meme.xml aa_memeout/aa_peaks.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.294069
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc aa_memeout/fimo_out_2 --bgfile aa_memeout/background --motif GGRRTCGAACCSVKGAYCTYHYGRTTAMWA aa_memeout/meme_out/meme.xml aa_memeout/aa_peaks.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.298489
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc aa_memeout/fimo_out_3 --bgfile aa_memeout/background --motif WACAYCCRTACAYY aa_memeout/meme_out/meme.xml aa_memeout/aa_peaks.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.279599
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc aa_memeout/fimo_out_4 --bgfile aa_memeout/background --motif CAACTKGG aa_memeout/dreme_out/dreme.xml aa_memeout/aa_peaks.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.172934
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc aa_memeout/fimo_out_5 --bgfile aa_memeout/background --motif GCKCTACC aa_memeout/dreme_out/dreme.xml aa_memeout/aa_peaks.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.173088
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc aa_memeout/fimo_out_6 --bgfile aa_memeout/background --motif AAGGCGM aa_memeout/dreme_out/dreme.xml aa_memeout/aa_peaks.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.176264
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc aa_memeout/fimo_out_7 --bgfile aa_memeout/background --motif AGRAAA aa_memeout/dreme_out/dreme.xml aa_memeout/aa_peaks.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.15892
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc aa_memeout/fimo_out_8 --bgfile aa_memeout/background --motif GCCWTAAC aa_memeout/dreme_out/dreme.xml aa_memeout/aa_peaks.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.178166
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc aa_memeout/fimo_out_9 --bgfile aa_memeout/background --motif GTGATAGY aa_memeout/dreme_out/dreme.xml aa_memeout/aa_peaks.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.192125
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc aa_memeout/fimo_out_10 --bgfile aa_memeout/background --motif TCTCCACR aa_memeout/dreme_out/dreme.xml aa_memeout/aa_peaks.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.183154
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc aa_memeout/fimo_out_11 --bgfile aa_memeout/background --motif CTWGACC aa_memeout/dreme_out/dreme.xml aa_memeout/aa_peaks.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.176457
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc aa_memeout/fimo_out_12 --bgfile aa_memeout/background --motif CATATATW aa_memeout/dreme_out/dreme.xml aa_memeout/aa_peaks.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.183786
Writing output
Invoking:
  meme-chip_html_to_tsv aa_memeout/meme-chip.html aa_memeout/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.174565
Done