Invoking:
  getsize cbf1_hg19/cbf1.hg19.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.110583
Invoking:
  fasta-most -min 50 < cbf1_hg19/cbf1.hg19.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.141221
Invoking:
  fasta-center -dna -len 100 < cbf1_hg19/cbf1.hg19.fa 1> cbf1_hg19/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.22861
Invoking:
  fasta-shuffle-letters cbf1_hg19/seqs-centered cbf1_hg19/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.0798
Invoking:
  fasta-subsample cbf1_hg19/seqs-centered 600 -rest cbf1_hg19/seqs-discarded -seed 1 1> cbf1_hg19/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.206858
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 cbf1_hg19/cbf1.hg19.fa cbf1_hg19/background
Finished invoke:
  name: bg  status: 0  time: 0.093238
Invoking:
  meme cbf1_hg19/seqs-sampled -oc cbf1_hg19/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile cbf1_hg19/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 711.622567
Invoking:
  dreme -v 1 -oc cbf1_hg19/dreme_out -png -dna -p cbf1_hg19/seqs-centered -n cbf1_hg19/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 714.240397
Invoking:
  centrimo -seqlen 130 -verbosity 1 -oc cbf1_hg19/centrimo_out -bfile cbf1_hg19/background cbf1_hg19/cbf1.hg19.fa cbf1_hg19/meme_out/meme.xml cbf1_hg19/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.373315
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 cbf1_hg19/combined.meme cbf1_hg19/combined.meme 1> cbf1_hg19/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.546373
Invoking:
  spamo -verbosity 1 -oc cbf1_hg19/spamo_out_1 -bgfile cbf1_hg19/background -primary TGACTMA cbf1_hg19/cbf1.hg19.fa cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/meme_out/meme.xml cbf1_hg19/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 2.912042
Invoking:
  spamo -verbosity 1 -oc cbf1_hg19/spamo_out_2 -bgfile cbf1_hg19/background -primary SCCSCCSCCSCCSSCSCCBSCSCCGCCSC cbf1_hg19/cbf1.hg19.fa cbf1_hg19/meme_out/meme.xml cbf1_hg19/meme_out/meme.xml cbf1_hg19/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 6.520734
Invoking:
  spamo -verbosity 1 -oc cbf1_hg19/spamo_out_3 -bgfile cbf1_hg19/background -primary CHGGRA cbf1_hg19/cbf1.hg19.fa cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/meme_out/meme.xml cbf1_hg19/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 12.351137
Invoking:
  spamo -verbosity 1 -oc cbf1_hg19/spamo_out_4 -bgfile cbf1_hg19/background -primary WTTWYWTWBWKWTTWHHTWHM cbf1_hg19/cbf1.hg19.fa cbf1_hg19/meme_out/meme.xml cbf1_hg19/meme_out/meme.xml cbf1_hg19/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 4.424799
Invoking:
  spamo -verbosity 1 -oc cbf1_hg19/spamo_out_5 -bgfile cbf1_hg19/background -primary RTGGGAA cbf1_hg19/cbf1.hg19.fa cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/meme_out/meme.xml cbf1_hg19/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 3.146912
Invoking:
  spamo -verbosity 1 -oc cbf1_hg19/spamo_out_6 -bgfile cbf1_hg19/background -primary AGDAA cbf1_hg19/cbf1.hg19.fa cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/meme_out/meme.xml cbf1_hg19/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 10.311088
Invoking:
  spamo -verbosity 1 -oc cbf1_hg19/spamo_out_7 -bgfile cbf1_hg19/background -primary ACGTSAB cbf1_hg19/cbf1.hg19.fa cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/meme_out/meme.xml cbf1_hg19/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 3.082529
Invoking:
  spamo -verbosity 1 -oc cbf1_hg19/spamo_out_8 -bgfile cbf1_hg19/background -primary RRCCACA cbf1_hg19/cbf1.hg19.fa cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/meme_out/meme.xml cbf1_hg19/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 4.292885
Invoking:
  spamo -verbosity 1 -oc cbf1_hg19/spamo_out_9 -bgfile cbf1_hg19/background -primary CCGCWGCY cbf1_hg19/cbf1.hg19.fa cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/meme_out/meme.xml cbf1_hg19/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 4.964214
Invoking:
  spamo -verbosity 1 -oc cbf1_hg19/spamo_out_10 -bgfile cbf1_hg19/background -primary RTAAAYA cbf1_hg19/cbf1.hg19.fa cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/meme_out/meme.xml cbf1_hg19/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 1.493215
Invoking:
  spamo -verbosity 1 -oc cbf1_hg19/spamo_out_11 -bgfile cbf1_hg19/background -primary ATTGGCYG cbf1_hg19/cbf1.hg19.fa cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/meme_out/meme.xml cbf1_hg19/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 1.389847
Invoking:
  spamo -verbosity 1 -oc cbf1_hg19/spamo_out_12 -bgfile cbf1_hg19/background -primary CTCCKCC cbf1_hg19/cbf1.hg19.fa cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/meme_out/meme.xml cbf1_hg19/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 7.426447
Invoking:
  spamo -verbosity 1 -oc cbf1_hg19/spamo_out_13 -bgfile cbf1_hg19/background -primary ADTTTCC cbf1_hg19/cbf1.hg19.fa cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/meme_out/meme.xml cbf1_hg19/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 2.348929
Invoking:
  spamo -verbosity 1 -oc cbf1_hg19/spamo_out_14 -bgfile cbf1_hg19/background -primary GTBAC cbf1_hg19/cbf1.hg19.fa cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/meme_out/meme.xml cbf1_hg19/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 8.584082
Invoking:
  spamo -verbosity 1 -oc cbf1_hg19/spamo_out_15 -bgfile cbf1_hg19/background -primary ATGGCGRC cbf1_hg19/cbf1.hg19.fa cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/meme_out/meme.xml cbf1_hg19/dreme_out/dreme.xml
Finished invoke:
  name: spamo15  status: 0  time: 1.454762
Invoking:
  spamo -verbosity 1 -oc cbf1_hg19/spamo_out_16 -bgfile cbf1_hg19/background -primary GCGCABGC cbf1_hg19/cbf1.hg19.fa cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/meme_out/meme.xml cbf1_hg19/dreme_out/dreme.xml
Finished invoke:
  name: spamo16  status: 0  time: 3.190828
Invoking:
  spamo -verbosity 1 -oc cbf1_hg19/spamo_out_17 -bgfile cbf1_hg19/background -primary ACTTCCS cbf1_hg19/cbf1.hg19.fa cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/meme_out/meme.xml cbf1_hg19/dreme_out/dreme.xml
Finished invoke:
  name: spamo17  status: 0  time: 2.785341
Invoking:
  spamo -verbosity 1 -oc cbf1_hg19/spamo_out_18 -bgfile cbf1_hg19/background -primary CCACGYCC cbf1_hg19/cbf1.hg19.fa cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/meme_out/meme.xml cbf1_hg19/dreme_out/dreme.xml
Finished invoke:
  name: spamo18  status: 0  time: 2.095107
Invoking:
  spamo -verbosity 1 -oc cbf1_hg19/spamo_out_19 -bgfile cbf1_hg19/background -primary GGAATGY cbf1_hg19/cbf1.hg19.fa cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/meme_out/meme.xml cbf1_hg19/dreme_out/dreme.xml
Finished invoke:
  name: spamo19  status: 0  time: 2.092885
Invoking:
  spamo -verbosity 1 -oc cbf1_hg19/spamo_out_20 -bgfile cbf1_hg19/background -primary ACTACAAY cbf1_hg19/cbf1.hg19.fa cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/meme_out/meme.xml cbf1_hg19/dreme_out/dreme.xml
Finished invoke:
  name: spamo20  status: 0  time: 0.787196
Invoking:
  spamo -verbosity 1 -oc cbf1_hg19/spamo_out_21 -bgfile cbf1_hg19/background -primary ACAMACAC cbf1_hg19/cbf1.hg19.fa cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/meme_out/meme.xml cbf1_hg19/dreme_out/dreme.xml
Finished invoke:
  name: spamo21  status: 0  time: 1.021307
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc cbf1_hg19/fimo_out_1 --bgfile cbf1_hg19/background --motif TGACTMA cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/cbf1.hg19.fa
Finished invoke:
  name: fimo1  status: 0  time: 1.140369
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc cbf1_hg19/fimo_out_2 --bgfile cbf1_hg19/background --motif SCCSCCSCCSCCSSCSCCBSCSCCGCCSC cbf1_hg19/meme_out/meme.xml cbf1_hg19/cbf1.hg19.fa
Finished invoke:
  name: fimo2  status: 0  time: 1.64104
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc cbf1_hg19/fimo_out_3 --bgfile cbf1_hg19/background --motif CHGGRA cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/cbf1.hg19.fa
Finished invoke:
  name: fimo3  status: 0  time: 1.032885
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc cbf1_hg19/fimo_out_4 --bgfile cbf1_hg19/background --motif WTTWYWTWBWKWTTWHHTWHM cbf1_hg19/meme_out/meme.xml cbf1_hg19/cbf1.hg19.fa
Finished invoke:
  name: fimo4  status: 0  time: 1.465113
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc cbf1_hg19/fimo_out_5 --bgfile cbf1_hg19/background --motif RTGGGAA cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/cbf1.hg19.fa
Finished invoke:
  name: fimo5  status: 0  time: 1.175912
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc cbf1_hg19/fimo_out_6 --bgfile cbf1_hg19/background --motif AGDAA cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/cbf1.hg19.fa
Finished invoke:
  name: fimo6  status: 0  time: 1.044956
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc cbf1_hg19/fimo_out_7 --bgfile cbf1_hg19/background --motif ACGTSAB cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/cbf1.hg19.fa
Finished invoke:
  name: fimo7  status: 0  time: 1.072233
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc cbf1_hg19/fimo_out_8 --bgfile cbf1_hg19/background --motif RRCCACA cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/cbf1.hg19.fa
Finished invoke:
  name: fimo8  status: 0  time: 1.111217
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc cbf1_hg19/fimo_out_9 --bgfile cbf1_hg19/background --motif CCGCWGCY cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/cbf1.hg19.fa
Finished invoke:
  name: fimo9  status: 0  time: 1.136925
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc cbf1_hg19/fimo_out_10 --bgfile cbf1_hg19/background --motif RTAAAYA cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/cbf1.hg19.fa
Finished invoke:
  name: fimo10  status: 0  time: 1.088584
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc cbf1_hg19/fimo_out_11 --bgfile cbf1_hg19/background --motif ATTGGCYG cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/cbf1.hg19.fa
Finished invoke:
  name: fimo11  status: 0  time: 1.081078
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc cbf1_hg19/fimo_out_12 --bgfile cbf1_hg19/background --motif CTCCKCC cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/cbf1.hg19.fa
Finished invoke:
  name: fimo12  status: 0  time: 1.083547
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc cbf1_hg19/fimo_out_13 --bgfile cbf1_hg19/background --motif ADTTTCC cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/cbf1.hg19.fa
Finished invoke:
  name: fimo13  status: 0  time: 1.092722
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc cbf1_hg19/fimo_out_14 --bgfile cbf1_hg19/background --motif GTBAC cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/cbf1.hg19.fa
Finished invoke:
  name: fimo14  status: 0  time: 1.061362
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc cbf1_hg19/fimo_out_15 --bgfile cbf1_hg19/background --motif ATGGCGRC cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/cbf1.hg19.fa
Finished invoke:
  name: fimo15  status: 0  time: 1.093415
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc cbf1_hg19/fimo_out_16 --bgfile cbf1_hg19/background --motif GCGCABGC cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/cbf1.hg19.fa
Finished invoke:
  name: fimo16  status: 0  time: 1.106538
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc cbf1_hg19/fimo_out_17 --bgfile cbf1_hg19/background --motif ACTTCCS cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/cbf1.hg19.fa
Finished invoke:
  name: fimo17  status: 0  time: 1.066745
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc cbf1_hg19/fimo_out_18 --bgfile cbf1_hg19/background --motif CCACGYCC cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/cbf1.hg19.fa
Finished invoke:
  name: fimo18  status: 0  time: 1.083584
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc cbf1_hg19/fimo_out_19 --bgfile cbf1_hg19/background --motif GGAATGY cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/cbf1.hg19.fa
Finished invoke:
  name: fimo19  status: 0  time: 1.080578
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc cbf1_hg19/fimo_out_20 --bgfile cbf1_hg19/background --motif ACTACAAY cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/cbf1.hg19.fa
Finished invoke:
  name: fimo20  status: 0  time: 1.095212
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc cbf1_hg19/fimo_out_21 --bgfile cbf1_hg19/background --motif ACAMACAC cbf1_hg19/dreme_out/dreme.xml cbf1_hg19/cbf1.hg19.fa
Finished invoke:
  name: fimo21  status: 0  time: 1.122
Writing output
Invoking:
  meme-chip_html_to_tsv cbf1_hg19/meme-chip.html cbf1_hg19/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.40311
Done