# DREME 4.12.0 # command: dreme -v 1 -oc a549_max_memeout/dreme_out -png -dna -p a549_max_memeout/seqs-centered -n a549_max_memeout/seqs-shuffled # positives: 28950 from a549_max_memeout/seqs-centered (Tue Sep 29 09:48:03 PDT 2020) # negatives: 28950 from a549_max_memeout/seqs-shuffled (Tue Sep 29 09:48:03 PDT 2020) # host: surya.stanford.edu # when: Tue Sep 29 10:00:06 PDT 2020 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.205 C 0.296 G 0.296 T 0.204 MOTIF RTGASTMA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST RTGASTMA TKASTCAY 2864 392 8.3e-487 3.8e-482 # GTGACTCA TGAGTCAC 893 81 1.4e-176 6.5e-172 # ATGACTCA TGAGTCAT 888 80 5.2e-176 2.4e-171 # ATGAGTCA TGACTCAT 813 72 4.4e-162 2.0e-157 # GTGAGTCA TGACTCAC 787 84 4.1e-146 1.9e-141 # ATGACTAA TTAGTCAT 227 28 2.4e-040 1.1e-035 # ATGAGTAA TTACTCAT 170 38 1.7e-021 7.8e-017 # GTGACTAA TTAGTCAC 165 36 2.7e-021 1.2e-016 # GTGAGTAA TTACTCAC 100 37 3.4e-008 1.5e-003 letter-probability matrix: alength= 4 w= 8 nsites= 3086 E= 3.8e-482 0.529812 0.000000 0.470188 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.559300 0.440700 0.000000 0.000000 0.000000 0.000000 1.000000 0.215489 0.784511 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CNGGRA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CNGGRA TYCCNG 15729 11794 4.2e-236 1.9e-231 # CAGGAA TTCCTG 3199 1906 4.7e-081 2.2e-076 # CTGGGA TCCCAG 3803 2489 1.5e-069 6.7e-065 # CCGGGA TCCCGG 2917 1811 6.1e-064 2.8e-059 # CGGGAA TTCCCG 1897 1186 4.5e-040 2.1e-035 # CGGGGA TCCCCG 2958 2126 1.1e-034 5.1e-030 # CCGGAA TTCCGG 1675 1081 1.7e-031 7.7e-027 # CTGGAA TTCCAG 2590 1881 1.2e-028 5.4e-024 # CAGGGA TCCCTG 3266 2612 1.2e-019 5.5e-015 letter-probability matrix: alength= 4 w= 6 nsites= 22691 E= 1.9e-231 0.000000 1.000000 0.000000 0.000000 0.298621 0.194923 0.212375 0.294081 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.413071 0.000000 0.586929 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CACRTGB DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CACRTGB VCAYGTG 3507 1358 9.6e-235 4.3e-230 # CACGTGG CCACGTG 1147 213 1.5e-158 6.6e-154 # CACGTGC GCACGTG 807 203 1.9e-087 8.7e-083 # CACGTGT ACACGTG 532 92 3.2e-077 1.4e-072 # CACATGG CCATGTG 891 354 3.4e-055 1.5e-050 # CACATGC GCATGTG 690 414 2.2e-017 1.0e-012 # CACATGT ACATGTG 425 267 8.2e-010 3.7e-005 letter-probability matrix: alength= 4 w= 7 nsites= 3765 E= 4.3e-230 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.544223 0.000000 0.455777 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.325100 0.471713 0.203187 MOTIF GGGHGGGR DREME-4 # Word RC Word Pos Neg P-value E-value # BEST GGGHGGGR YCCCDCCC 3895 2155 3.0e-125 1.3e-120 # GGGCGGGG CCCCGCCC 1422 665 2.0e-065 9.2e-061 # GGGTGGGG CCCCACCC 856 420 8.4e-036 3.8e-031 # GGGCGGGA TCCCGCCC 539 250 8.0e-026 3.6e-021 # GGGAGGGG CCCCTCCC 816 512 1.5e-017 6.7e-013 # GGGAGGGA TCCCTCCC 478 289 3.3e-012 1.5e-007 # GGGTGGGA TCCCACCC 322 201 6.0e-008 2.7e-003 letter-probability matrix: alength= 4 w= 8 nsites= 4514 E= 1.3e-120 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.281790 0.464112 0.000000 0.254098 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.287550 0.000000 0.712450 0.000000 MOTIF RNAAAYA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST RNAAAYA TRTTTNY 5388 3118 3.1e-158 1.4e-153 # GTAAACA TGTTTAC 534 163 1.0e-047 4.6e-043 # GTAAATA TATTTAC 371 81 5.1e-046 2.3e-041 # ATAAATA TATTTAT 347 111 7.5e-030 3.4e-025 # ATAAACA TGTTTAT 411 185 3.4e-021 1.5e-016 # ACAAATA TATTTGT 391 179 1.3e-019 5.8e-015 # AAAAATA TATTTTT 481 244 2.8e-019 1.3e-014 # ACAAACA TGTTTGT 600 338 2.6e-018 1.2e-013 # GCAAATA TATTTGC 337 151 8.4e-018 3.8e-013 # AGAAACA TGTTTCT 521 312 1.5e-013 6.6e-009 # AGAAATA TATTTCT 321 163 2.4e-013 1.1e-008 # GCAAACA TGTTTGC 573 363 2.3e-012 1.0e-007 # GGAAATA TATTTCC 227 107 2.0e-011 9.2e-007 # GAAAACA TGTTTTC 452 282 1.4e-010 6.5e-006 # GAAAATA TATTTTC 286 160 1.1e-009 5.0e-005 # AAAAACA TGTTTTT 546 433 1.5e-004 6.8e+000 # GGAAACA TGTTTCC 313 244 1.9e-003 8.4e+001 letter-probability matrix: alength= 4 w= 7 nsites= 6565 E= 1.4e-153 0.531759 0.000000 0.468241 0.000000 0.266108 0.279970 0.208378 0.245545 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.593907 0.000000 0.406093 1.000000 0.000000 0.000000 0.000000 MOTIF CCDCCKCC DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CCDCCKCC GGMGGHGG 3310 1899 1.5e-094 6.6e-090 # CCGCCGCC GGCGGCGG 1213 554 1.6e-058 7.2e-054 # CCGCCTCC GGAGGCGG 668 306 1.9e-032 8.4e-028 # CCTCCTCC GGAGGAGG 761 377 2.7e-031 1.2e-026 # CCACCTCC GGAGGTGG 428 236 3.0e-014 1.3e-009 # CCACCGCC GGCGGTGG 360 224 8.5e-009 3.8e-004 # CCTCCGCC GGCGGAGG 555 401 2.9e-007 1.3e-002 letter-probability matrix: alength= 4 w= 8 nsites= 3897 E= 6.6e-090 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.187837 0.000000 0.492430 0.319733 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.550937 0.449063 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AGRAA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST AGRAA TTYCT 9401 7268 9.6e-086 4.2e-081 # AGGAA TTCCT 5253 3714 1.9e-070 8.5e-066 # AGAAA TTTCT 5401 4323 2.2e-033 9.5e-029 letter-probability matrix: alength= 4 w= 5 nsites= 12038 E= 4.2e-081 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.516282 0.000000 0.483718 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TGARTMA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST TGARTMA TKAYTCA 1418 645 5.7e-069 2.5e-064 # TGAATCA TGATTCA 732 276 2.5e-049 1.1e-044 # TGAGTCA TGACTCA 284 122 2.2e-016 9.5e-012 # TGAGTAA TTACTCA 198 97 1.9e-009 8.2e-005 # TGAATAA TTATTCA 251 158 2.3e-006 9.9e-002 letter-probability matrix: alength= 4 w= 7 nsites= 1510 E= 2.5e-064 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.673510 0.000000 0.326490 0.000000 0.000000 0.000000 0.000000 1.000000 0.303974 0.696026 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGRDGGCG DREME-9 # Word RC Word Pos Neg P-value E-value # BEST AGRDGGCG CGCCHYCT 1541 827 1.2e-051 5.3e-047 # AGATGGCG CGCCATCT 191 61 3.8e-017 1.6e-012 # AGGGGGCG CGCCCCCT 529 299 3.6e-016 1.6e-011 # AGAGGGCG CGCCCTCT 338 186 1.3e-011 5.5e-007 # AGGTGGCG CGCCACCT 200 100 3.7e-009 1.6e-004 # AGGAGGCG CGCCTCCT 178 90 3.9e-008 1.7e-003 # AGAAGGCG CGCCTTCT 140 102 8.5e-003 3.7e+002 letter-probability matrix: alength= 4 w= 8 nsites= 1590 E= 5.3e-047 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.423270 0.000000 0.576730 0.000000 0.200000 0.000000 0.551572 0.248428 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF TGACSTCR DREME-10 # Word RC Word Pos Neg P-value E-value # BEST TGACSTCR YGASGTCA 496 192 1.5e-032 6.7e-028 # TGACGTCA TGACGTCA 141 16 1.6e-026 6.9e-022 # TGACCTCA TGAGGTCA 200 91 6.7e-011 2.9e-006 # TGACGTCG CGACGTCA 53 22 2.2e-004 9.7e+000 # TGACCTCG CGAGGTCA 108 63 3.5e-004 1.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 505 E= 6.7e-028 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.611881 0.388119 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.679208 0.000000 0.320792 0.000000 MOTIF GCNGCYGC DREME-11 # Word RC Word Pos Neg P-value E-value # BEST GCNGCYGC GCRGCNGC 2658 1895 2.2e-032 9.5e-028 # GCTGCTGC GCAGCAGC 598 371 9.6e-014 4.2e-009 # GCAGCCGC GCGGCTGC 527 342 1.4e-010 6.0e-006 # GCCGCTGC GCAGCGGC 510 335 7.2e-010 3.1e-005 # GCCGCCGC GCGGCGGC 496 334 8.2e-009 3.6e-004 # GCGGCCGC GCGGCCGC 398 260 3.5e-008 1.5e-003 # GCAGCTGC GCAGCTGC 280 174 3.4e-007 1.5e-002 # GCTGCCGC GCGGCAGC 447 339 5.9e-005 2.6e+000 letter-probability matrix: alength= 4 w= 8 nsites= 2940 E= 9.5e-028 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.173129 0.302381 0.206803 0.317687 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.490816 0.000000 0.509184 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CACRCVCA DREME-12 # Word RC Word Pos Neg P-value E-value # BEST CACRCVCA TGBGYGTG 1082 603 6.2e-033 2.7e-028 # CACACACA TGTGTGTG 387 169 3.7e-021 1.6e-016 # CACGCGCA TGCGCGTG 162 72 1.8e-009 7.8e-005 # CACACCCA TGGGTGTG 233 146 4.3e-006 1.8e-001 # CACGCCCA TGGGCGTG 178 110 3.5e-005 1.5e+000 # CACGCACA TGTGCGTG 129 78 2.4e-004 1.0e+001 # CACACGCA TGCGTGTG 129 80 4.2e-004 1.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 1403 E= 2.7e-028 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.673557 0.000000 0.326443 0.000000 0.000000 1.000000 0.000000 0.000000 0.508909 0.294369 0.196721 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF DAAATR DREME-13 # Word RC Word Pos Neg P-value E-value # BEST DAAATR YATTTH 3556 2706 2.7e-030 1.2e-025 # AAAATA TATTTT 493 322 8.8e-010 3.8e-005 # AAAATG CATTTT 1223 960 5.2e-009 2.3e-004 # TAAATA TATTTA 396 253 9.2e-009 3.9e-004 # GAAATG CATTTC 753 572 2.7e-007 1.2e-002 # TAAATG CATTTA 789 636 2.2e-005 9.7e-001 # GAAATA TATTTC 304 231 8.7e-004 3.7e+001 letter-probability matrix: alength= 4 w= 6 nsites= 4025 E= 1.2e-025 0.440497 0.000000 0.264099 0.295404 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.293665 0.000000 0.706335 0.000000 MOTIF CAGCSTGG DREME-14 # Word RC Word Pos Neg P-value E-value # BEST CAGCSTGG CCASGCTG 709 372 1.2e-025 5.3e-021 # CAGCCTGG CCAGGCTG 536 280 6.3e-020 2.7e-015 # CAGCGTGG CCACGCTG 173 95 1.0e-006 4.4e-002 letter-probability matrix: alength= 4 w= 8 nsites= 718 E= 5.3e-021 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.759053 0.240947 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CRGCCTC DREME-15 # Word RC Word Pos Neg P-value E-value # BEST CRGCCTC GAGGCYG 2203 1622 1.2e-022 5.2e-018 # CAGCCTC GAGGCTG 1220 870 3.3e-015 1.4e-010 # CGGCCTC GAGGCCG 1024 777 1.8e-009 7.9e-005 letter-probability matrix: alength= 4 w= 7 nsites= 2297 E= 5.2e-018 0.000000 1.000000 0.000000 0.000000 0.544623 0.000000 0.455377 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CGCABGCG DREME-16 # Word RC Word Pos Neg P-value E-value # BEST CGCABGCG CGCVTGCG 708 393 3.3e-022 1.4e-017 # CGCATGCG CGCATGCG 125 31 6.5e-015 2.8e-010 # CGCAGGCG CGCCTGCG 399 237 5.5e-011 2.3e-006 # CGCACGCG CGCGTGCG 209 131 1.3e-005 5.6e-001 letter-probability matrix: alength= 4 w= 8 nsites= 750 E= 1.4e-017 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.280000 0.550667 0.169333 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GCCTKTAA DREME-17 # Word RC Word Pos Neg P-value E-value # BEST GCCTKTAA TTAMAGGC 263 91 6.6e-021 2.8e-016 # GCCTGTAA TTACAGGC 192 53 4.7e-020 2.0e-015 # GCCTTTAA TTAAAGGC 73 38 5.7e-004 2.4e+001 letter-probability matrix: alength= 4 w= 8 nsites= 269 E= 2.8e-016 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.724907 0.275093 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTCCWGS DREME-18 # Word RC Word Pos Neg P-value E-value # BEST CTCCWGS SCWGGAG 3903 3174 1.2e-020 5.1e-016 # CTCCTGG CCAGGAG 1069 818 2.3e-009 9.9e-005 # CTCCAGG CCTGGAG 999 757 2.5e-009 1.1e-004 # CTCCAGC GCTGGAG 1075 894 1.8e-005 7.7e-001 # CTCCTGC GCAGGAG 1108 948 1.8e-004 7.5e+000 letter-probability matrix: alength= 4 w= 7 nsites= 4229 E= 5.1e-016 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.489950 0.000000 0.000000 0.510050 0.000000 0.000000 1.000000 0.000000 0.000000 0.526602 0.473398 0.000000 MOTIF CACGTD DREME-19 # Word RC Word Pos Neg P-value E-value # BEST CACGTD HACGTG 993 642 6.1e-019 2.6e-014 # CACGTG CACGTG 86 16 4.4e-013 1.9e-008 # CACGTT AACGTG 609 413 3.4e-010 1.4e-005 # CACGTA TACGTG 314 217 1.4e-005 5.8e-001 letter-probability matrix: alength= 4 w= 6 nsites= 1028 E= 2.6e-014 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.310311 0.000000 0.087549 0.602140 MOTIF ATTGGCYG DREME-20 # Word RC Word Pos Neg P-value E-value # BEST ATTGGCYG CRGCCAAT 284 112 9.5e-019 4.0e-014 # ATTGGCTG CAGCCAAT 199 78 1.0e-013 4.3e-009 # ATTGGCCG CGGCCAAT 87 34 7.7e-007 3.2e-002 letter-probability matrix: alength= 4 w= 8 nsites= 292 E= 4.0e-014 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.301370 0.000000 0.698630 0.000000 0.000000 1.000000 0.000000 MOTIF GGAAD DREME-21 # Word RC Word Pos Neg P-value E-value # BEST GGAAD HTTCC 7732 6827 2.3e-018 9.8e-014 # GGAAA TTTCC 2626 2107 1.9e-015 7.8e-011 # GGAAT ATTCC 1803 1591 9.4e-005 4.0e+000 # GGAAG CTTCC 4030 3742 2.3e-004 9.9e+000 letter-probability matrix: alength= 4 w= 5 nsites= 9045 E= 9.8e-014 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.304588 0.000000 0.487562 0.207850 MOTIF TTWAWA DREME-22 # Word RC Word Pos Neg P-value E-value # BEST TTWAWA TWTWAA 1859 1382 3.3e-018 1.4e-013 # TTTAAA TTTAAA 531 344 1.0e-010 4.2e-006 # TTAAAA TTTTAA 884 665 9.4e-009 3.9e-004 # TTTATA TATAAA 408 274 1.4e-007 5.8e-003 # TTAATA TATTAA 481 397 2.4e-003 9.9e+001 letter-probability matrix: alength= 4 w= 6 nsites= 2008 E= 1.4e-013 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.624502 0.000000 0.000000 0.375498 1.000000 0.000000 0.000000 0.000000 0.555777 0.000000 0.000000 0.444223 1.000000 0.000000 0.000000 0.000000 MOTIF CASMGCC DREME-23 # Word RC Word Pos Neg P-value E-value # BEST CASMGCC GGCKSTG 3195 2600 9.2e-017 3.8e-012 # CACAGCC GGCTGTG 815 626 2.6e-007 1.1e-002 # CACCGCC GGCGGTG 490 347 3.6e-007 1.5e-002 # CAGAGCC GGCTCTG 1047 866 1.4e-005 5.8e-001 # CAGCGCC GGCGCTG 990 851 5.4e-004 2.2e+001 letter-probability matrix: alength= 4 w= 7 nsites= 3432 E= 3.8e-012 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.386364 0.613636 0.000000 0.554487 0.445513 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AAAMAAAA DREME-24 # Word RC Word Pos Neg P-value E-value # BEST AAAMAAAA TTTTKTTT 295 136 5.5e-015 2.3e-010 # AAAAAAAA TTTTTTTT 219 94 5.3e-013 2.2e-008 # AAACAAAA TTTTGTTT 79 43 7.1e-004 2.9e+001 letter-probability matrix: alength= 4 w= 8 nsites= 354 E= 2.3e-010 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.768362 0.231638 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCACRCCC DREME-25 # Word RC Word Pos Neg P-value E-value # BEST CCACRCCC GGGYGTGG 492 283 1.9e-014 7.9e-010 # CCACGCCC GGGCGTGG 282 159 2.2e-009 9.1e-005 # CCACACCC GGGTGTGG 213 124 6.7e-007 2.8e-002 letter-probability matrix: alength= 4 w= 8 nsites= 508 E= 7.9e-010 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.431102 0.000000 0.568898 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CTCCDCCC DREME-26 # Word RC Word Pos Neg P-value E-value # BEST CTCCDCCC GGGHGGAG 948 659 1.4e-013 5.7e-009 # CTCCTCCC GGGAGGAG 287 177 1.7e-007 6.9e-003 # CTCCGCCC GGGCGGAG 367 251 1.6e-006 6.4e-002 # CTCCACCC GGGTGGAG 310 237 9.8e-004 4.0e+001 letter-probability matrix: alength= 4 w= 8 nsites= 981 E= 5.7e-009 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.320082 0.000000 0.383282 0.296636 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AAATAH DREME-27 # Word RC Word Pos Neg P-value E-value # BEST AAATAH DTATTT 428 246 8.6e-013 3.6e-008 # AAATAT ATATTT 133 73 1.7e-005 7.0e-001 # AAATAC GTATTT 126 69 2.6e-005 1.1e+000 # AAATAA TTATTT 171 105 4.1e-005 1.7e+000 letter-probability matrix: alength= 4 w= 6 nsites= 435 E= 3.6e-008 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.395402 0.289655 0.000000 0.314943 MOTIF CCRCGY DREME-28 # Word RC Word Pos Neg P-value E-value # BEST CCRCGY RCGYGG 5379 4778 2.7e-011 1.1e-006 # CCGCGC GCGCGG 3339 3009 6.0e-006 2.5e-001 # CCGCGT ACGCGG 1149 974 5.9e-005 2.4e+000 # CCACGT ACGTGG 318 240 5.2e-004 2.1e+001 # CCACGC GCGTGG 1349 1229 8.2e-003 3.4e+002 letter-probability matrix: alength= 4 w= 6 nsites= 6625 E= 1.1e-006 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.244528 0.000000 0.755472 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.787774 0.000000 0.212226 MOTIF CCCAGCCY DREME-29 # Word RC Word Pos Neg P-value E-value # BEST CCCAGCCY RGGCTGGG 711 491 7.7e-011 3.2e-006 # CCCAGCCC GGGCTGGG 556 381 4.5e-009 1.9e-004 # CCCAGCCT AGGCTGGG 158 112 3.0e-003 1.2e+002 letter-probability matrix: alength= 4 w= 8 nsites= 717 E= 3.2e-006 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.779637 0.000000 0.220363 MOTIF ATTCATTC DREME-30 # Word RC Word Pos Neg P-value E-value # BEST ATTCATTC GAATGAAT 88 27 4.8e-009 2.0e-004 # ATTCATTC GAATGAAT 88 27 4.8e-009 2.0e-004 letter-probability matrix: alength= 4 w= 8 nsites= 93 E= 2.0e-004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CCAGGA DREME-31 # Word RC Word Pos Neg P-value E-value # BEST CCAGGA TCCTGG 1042 802 7.4e-009 3.0e-004 # CCAGGA TCCTGG 1042 802 7.4e-009 3.0e-004 letter-probability matrix: alength= 4 w= 6 nsites= 1072 E= 3.0e-004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CWGCAGCC DREME-32 # Word RC Word Pos Neg P-value E-value # BEST CWGCAGCC GGCTGCWG 578 409 3.2e-008 1.3e-003 # CTGCAGCC GGCTGCAG 358 249 5.0e-006 2.0e-001 # CAGCAGCC GGCTGCTG 223 164 1.5e-003 6.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 588 E= 1.3e-003 0.000000 1.000000 0.000000 0.000000 0.384354 0.000000 0.000000 0.615646 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CATGGCGR DREME-33 # Word RC Word Pos Neg P-value E-value # BEST CATGGCGR YCGCCATG 192 102 7.9e-008 3.2e-003 # CATGGCGG CCGCCATG 118 58 3.5e-006 1.4e-001 # CATGGCGA TCGCCATG 76 44 2.2e-003 9.0e+001 letter-probability matrix: alength= 4 w= 8 nsites= 193 E= 3.2e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.383420 0.000000 0.616580 0.000000 MOTIF CASACAC DREME-34 # Word RC Word Pos Neg P-value E-value # BEST CASACAC GTGTSTG 793 601 1.1e-007 4.4e-003 # CAGACAC GTGTCTG 492 352 6.8e-007 2.8e-002 # CACACAC GTGTGTG 314 255 7.2e-003 3.0e+002 letter-probability matrix: alength= 4 w= 7 nsites= 825 E= 4.4e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.397576 0.602424 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CACTTTGG DREME-35 # Word RC Word Pos Neg P-value E-value # BEST CACTTTGG CCAAAGTG 182 97 1.9e-007 7.8e-003 # CACTTTGG CCAAAGTG 182 97 1.9e-007 7.8e-003 letter-probability matrix: alength= 4 w= 8 nsites= 182 E= 7.8e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AGGACRC DREME-36 # Word RC Word Pos Neg P-value E-value # BEST AGGACRC GYGTCCT 632 465 2.0e-007 8.2e-003 # AGGACAC GTGTCCT 344 250 6.1e-005 2.5e+000 # AGGACGC GCGTCCT 293 215 2.9e-004 1.2e+001 letter-probability matrix: alength= 4 w= 7 nsites= 639 E= 8.2e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.541471 0.000000 0.458529 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AGRTGGCA DREME-37 # Word RC Word Pos Neg P-value E-value # BEST AGRTGGCA TGCCAYCT 336 217 2.1e-007 8.6e-003 # AGGTGGCA TGCCACCT 213 132 7.2e-006 2.9e-001 # AGATGGCA TGCCATCT 125 85 3.4e-003 1.4e+002 letter-probability matrix: alength= 4 w= 8 nsites= 339 E= 8.6e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.371681 0.000000 0.628319 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CGTCTCYA DREME-38 # Word RC Word Pos Neg P-value E-value # BEST CGTCTCYA TRGAGACG 119 53 2.5e-007 1.0e-002 # CGTCTCTA TAGAGACG 56 17 2.6e-006 1.1e-001 # CGTCTCCA TGGAGACG 63 36 4.3e-003 1.8e+002 letter-probability matrix: alength= 4 w= 8 nsites= 120 E= 1.0e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.525000 0.000000 0.475000 1.000000 0.000000 0.000000 0.000000 MOTIF ACGTCAY DREME-39 # Word RC Word Pos Neg P-value E-value # BEST ACGTCAY RTGACGT 209 119 3.6e-007 1.5e-002 # ACGTCAT ATGACGT 101 49 1.3e-005 5.2e-001 # ACGTCAC GTGACGT 109 70 2.2e-003 8.8e+001 letter-probability matrix: alength= 4 w= 7 nsites= 212 E= 1.5e-002 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.518868 0.000000 0.481132 MOTIF CGGAGCYG DREME-40 # Word RC Word Pos Neg P-value E-value # BEST CGGAGCYG CRGCTCCG 454 322 1.0e-006 4.3e-002 # CGGAGCTG CAGCTCCG 219 142 2.8e-005 1.2e+000 # CGGAGCCG CGGCTCCG 247 182 9.5e-004 3.9e+001 letter-probability matrix: alength= 4 w= 8 nsites= 465 E= 4.3e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.531183 0.000000 0.468817 0.000000 0.000000 1.000000 0.000000 MOTIF GAGTCATM DREME-41 # Word RC Word Pos Neg P-value E-value # BEST GAGTCATM KATGACTC 103 45 1.0e-006 4.2e-002 # GAGTCATC GATGACTC 67 29 6.5e-005 2.7e+000 # GAGTCATA TATGACTC 37 16 2.7e-003 1.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 104 E= 4.2e-002 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.355769 0.644231 0.000000 0.000000 MOTIF TGATGTMA DREME-42 # Word RC Word Pos Neg P-value E-value # BEST TGATGTMA TKACATCA 190 108 1.1e-006 4.5e-002 # TGATGTCA TGACATCA 140 80 3.1e-005 1.3e+000 # TGATGTAA TTACATCA 50 28 8.4e-003 3.4e+002 letter-probability matrix: alength= 4 w= 8 nsites= 193 E= 4.5e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.269430 0.730570 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 4566.00 seconds